ID:

dme_6

 Coordinate:

chrUextra:25300120-25300200 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend:maturestarmismatch in alignmentmismatch in read

Predicted structure

-13.2 -12.3 -12.2

Flybase annnotation

unknown

Sense Strand Reads

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGGAGAAGGGTTTCGTGTGACAGTGGTTGATCACGAGTTAGTCGGTCCTAAGTTCAAGGCGAAAGCCGAAAATTTTCAAGTAAAACAAAAATGCCTAACTATATAAACAAAGCGAATTATAATACACTTG
***********************************................((((...(((..(((..((((.(((......)))..))))..))).)))...))))........****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V085
CME W2 wing disc		 V135
CME W2 (wing disc line)		 V026
1182-4H cell		 V147
1182-4H cell		 V009
CMEL1		 V126
CME L1 		V028
CMEW1 Cl.8+ cell		 V033
CMEW1 Cl.8+ cell		 V091
fGS/OSS total  		 V127
G2		 V019
GM2 cell		 V031
GM2 cell		 V018
Kc167 cell		 V024
kc167 cell		 V073
mbn2 		V148
mbn2 		V075
ML-DmBG1-C1		 V129
ML-DmBG1-c1		 V076
ML-DmBG3-C2		 V130
ML-DmBG3-c2 		V034
ML-DmD16c3 cell		 V131
ML-DmD16-c3 		V021
ML-DmD21 cell		 V010
MLDmD20c5		 V036
ML-DmD20c5 cell		 V027
ML-DmD21 cell		 M005
ML-DmD32 cell		 M006
ML-DmD32 		V022
ML-DmD32 cell		 V035
ML-DmD32 cell		 V132
ML-DmD32 		V030
ML-DmD8 cell		 V134
ML-DmD8 		V029
ML-DmD9 cell		 V125
ML-DmD9		 M029
OSC cells (nuclear)		 M030
OSC cells (cytoplasmic)		 M031
OSC cells (whole cell)		 V144
OSC		 OSS2
OSS_s2		 OSS6
OSS_s6		 OSS7
OSS_s7		 OSS8
OSS_s8		 V032
S1 cell		 V146
S1 cell		 V008
S2-DRSC		 V145
S2-DRSC		 V067
S2-NP		 V020
S2R+ cell		 V025
S2R+ cell		 V074
S3		 V128
S3 		V011
Sg4		 V133
Sg4 		T004
OSC-4N		 T005
89-4N
..................................................GTGGAGAAGGGTTTCGTGTG............................................................................................................... 20 0 20 181.70 3634 3403 0 0 0 0 0 86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 0 0 136 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGTGGAGAAGGGTTTCGTGTG............................................................................................................... 21 0 20 36.95 739 0 139 0 0 0 75 0 0 407 0 0 0 0 0 0 112 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0
.................................................AGTGGAGAAGGGTTTCGT.................................................................................................................. 18 0 20 20.25 405 319 10 0 0 0 0 0 27 0 0 0 0 0 0 0 0 0 0 0 3 0 3 0 0 0 17 0 0 2 0 0 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0
..................................................GTGGAGAAGGGTTTCGTGTGAC............................................................................................................. 22 0 1 20.00 20 7 0 0 0 0 0 0 1 9 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GGTTGATCACGAGTTAGTCGGTCCT................................................................................. 25 0 20 15.45 309 0 42 0 16 0 0 0 0 0 0 0 0 0 0 24 65 0 9 0 119 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGGAGAAGGGTTTCGTGTG............................................................................................................... 19 0 20 13.50 270 0 0 0 0 0 51 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 42 0 0 2 0 0 0 0 0 0 0 0 136 0 0 0 0 0 0 0 4 0 0 1 0 0 0 0 2 0
............................................................................GTTGATCACGAGTTAGTCGGTCCT................................................................................. 24 0 20 11.70 234 0 0 0 0 0 0 0 0 202 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGAGAAGGGTTTCGTGT................................................................................................................ 19 0 20 11.40 228 0 0 0 0 0 0 0 0 156 0 0 0 0 0 0 0 0 0 9 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0 0 0 0 0 0 0 0 3 0
.....................................................GAGAAGGGTTTCGTGTGAC............................................................................................................. 19 0 1 11.00 11 1 0 0 0 0 0 0 1 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGAGAAGGGTTTCGTG................................................................................................................. 18 0 20 10.95 219 0 0 1 0 0 0 94 0 0 0 0 0 12 0 0 5 0 0 0 0 0 2 0 0 0 0 27 6 0 0 0 5 0 0 0 0 0 1 34 0 0 0 0 0 24 0 0 0 0 0 0 0 7 0 1 0
.................................................AGTGGAGAAGGGTTTCGTGT................................................................................................................ 20 0 20 10.80 216 0 0 0 0 0 0 0 67 137 0 0 0 0 0 0 0 0 0 0 0 0 0 8 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0
...................................................TGGAGAAGGGTTTCGTGT................................................................................................................ 18 0 20 7.95 159 0 0 0 0 0 0 0 0 88 0 0 0 0 2 0 4 0 0 0 6 0 0 0 1 0 0 54 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CACGAGTTAGTCGGTCCTAA............................................................................... 20 0 20 7.75 155 0 0 0 0 0 0 0 0 32 0 82 0 0 0 0 17 0 0 0 9 0 3 0 0 0 0 0 0 0 0 0 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 1 0
...................................................TGGAGAAGGGTTTCGTGTGAC............................................................................................................. 21 0 1 7.00 7 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................AGAAGGGTTTCGTGTGAC............................................................................................................. 18 0 2 7.00 14 1 0 0 0 0 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CACGAGTTAGTCGGTCCTAAG.............................................................................. 21 0 20 5.55 111 0 0 0 0 0 0 3 0 0 9 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 74 0 0 9 0 0 0 0 2 0 1 0 5 0 0 0 0 0 0 0 0
.................................................AGTGGAGAAGGGTTTCGTGTGA.............................................................................................................. 22 0 20 5.10 102 0 0 0 0 0 0 0 0 0 23 0 0 0 0 0 0 0 0 4 29 0 0 0 0 0 0 16 0 0 2 0 0 19 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 4 0 0
...................................................................................ACGAGTTAGTCGGTCCTAA............................................................................... 19 0 20 4.95 99 23 0 0 0 0 0 0 0 0 0 63 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................GTGGAGAAGGGTTTCGTGTGA.............................................................................................................. 21 0 20 4.85 97 0 0 0 0 0 0 0 0 66 0 0 0 0 3 0 0 0 0 0 0 1 0 0 0 0 0 17 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 0 0 0 0 0 0
...........................................................................GGTTGATCACGAGTTAGTCGGTCC.................................................................................. 24 0 20 4.75 95 0 0 2 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 51 0 0 0 4 0 0 0 0 0 0 0
.........................................................................GTGGTTGATCACGAGTTAGTCGGTCCT................................................................................. 27 0 20 4.75 95 0 0 0 0 0 9 0 0 0 45 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 11 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 0 7 0 7 0 0 0 0 0
............................................................GTATCGTGTTCCAGTGGTTG..................................................................................................... 20 3 6 4.50 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 18 0 0 0 0 0 2 0 0 0
...........................................................................GGTTGATCACGAGTTAGTCGGTCCTA................................................................................ 26 0 20 4.35 87 51 0 1 0 0 0 0 0 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
...................................................TGGAGAAGGGTTTCGTGTGA.............................................................................................................. 20 0 20 4.20 84 0 0 2 3 0 0 0 0 0 19 0 0 0 0 10 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 31 0 0 0 0 0 0 4 1 2 0 0
....................................................GGAGAAGGGTTTCGTGTG............................................................................................................... 18 0 20 4.20 84 0 0 0 1 5 0 0 0 0 5 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 67 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................CACGAGTTAGTCGGTCCTAAGT............................................................................. 22 0 20 4.05 81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 71 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CACGAGTTAGTCGGTCCTA................................................................................ 19 0 20 3.80 76 0 0 0 0 0 0 0 0 0 0 62 1 0 1 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
.....................................................GAGAAGGGTTTCGTGTGA.............................................................................................................. 18 0 20 3.75 75 0 0 0 0 0 0 0 29 0 0 0 0 0 0 0 0 0 0 0 2 0 0 7 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 33 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1
................................................................................ATCACGAGTTAGTCGGTCCT................................................................................. 20 0 20 3.50 70 65 0 1 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CACGAGTTAGTCGGTCCT................................................................................. 18 0 20 3.10 62 0 0 0 0 0 0 0 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0
.............................................................................................................GCGAAAGCCGAAAATTTTCAA................................................... 21 0 20 3.00 60 0 0 0 30 0 6 0 10 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0
..................................................GTGGAGAAGGGTTTCGTGTGTC............................................................................................................. 22 1 1 3.00 3 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TAAGTTCAAGGCGAAAGC................................................................ 18 0 20 3.00 60 0 0 0 0 0 0 5 0 0 0 4 0 0 0 0 0 0 0 0 0 38 0 0 0 0 0 0 0 11 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................TAGTCGGTCCTAAGTTCAAGGC...................................................................... 22 0 20 3.00 60 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 3 0 0 2 0 0 0 0 6 0 0 0 16 5 0 0 0 0 0 0 20 0 4 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................AGTGGAGAAGGGTTTCGTGTGAC............................................................................................................. 23 0 1 3.00 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................ATCACGAGTTAGTCGGTCCTAAG.............................................................................. 23 0 20 2.95 59 0 0 0 0 0 0 0 0 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GGTTGATCACGAGTTAGTCG...................................................................................... 20 0 20 2.75 55 12 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 0 0 0 0 0 0 0 11 0 0 6 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0
..................................................GTGGAGAAGGGCTTCGTGTG............................................................................................................... 20 1 20 2.55 51 50 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TTCAAGGCGAAAGCCGAAAA.......................................................... 20 0 20 2.35 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47 0
...................................................................................ACGAGTTAGTCGGTCCTAAGTTC........................................................................... 23 0 20 2.30 46 0 1 0 0 0 0 1 0 0 0 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TCACGAGTTAGTCGGTCCTAAGT............................................................................. 23 0 20 2.25 45 0 0 0 0 0 0 0 0 0 0 37 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 3 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................GTGGTTGATCACGAGTTAGTCGGTCCTA................................................................................ 28 0 20 2.20 44 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 31 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TCACGAGTTAGTCGGTCCT................................................................................. 19 0 20 2.15 43 17 0 0 0 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 2 0 0 0 14 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5

Anti-sense strand reads

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGGAGAAGGGTTTCGTGTGACAGTGGTTGATCACGAGTTAGTCGGTCCTAAGTTCAAGGCGAAAGCCGAAAATTTTCAAGTAAAACAAAAATGCCTAACTATATAAACAAAGCGAATTATAATACACTTG
***********************************................((((...(((..(((..((((.(((......)))..))))..))).)))...))))........****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V085
CME W2 wing disc		 V135
CME W2 (wing disc line)		 V026
1182-4H cell		 V147
1182-4H cell		 V009
CMEL1		 V126
CME L1 		V028
CMEW1 Cl.8+ cell		 V033
CMEW1 Cl.8+ cell		 V091
fGS/OSS total  		 V127
G2		 V019
GM2 cell		 V031
GM2 cell		 V018
Kc167 cell		 V024
kc167 cell		 V073
mbn2 		V148
mbn2 		V075
ML-DmBG1-C1		 V129
ML-DmBG1-c1		 V076
ML-DmBG3-C2		 V130
ML-DmBG3-c2 		V034
ML-DmD16c3 cell		 V131
ML-DmD16-c3 		V021
ML-DmD21 cell		 V010
MLDmD20c5		 V036
ML-DmD20c5 cell		 V027
ML-DmD21 cell		 M005
ML-DmD32 cell		 M006
ML-DmD32 		V022
ML-DmD32 cell		 V035
ML-DmD32 cell		 V132
ML-DmD32 		V030
ML-DmD8 cell		 V134
ML-DmD8 		V029
ML-DmD9 cell		 V125
ML-DmD9		 M029
OSC cells (nuclear)		 M030
OSC cells (cytoplasmic)		 M031
OSC cells (whole cell)		 V144
OSC		 OSS2
OSS_s2		 OSS6
OSS_s6		 OSS7
OSS_s7		 OSS8
OSS_s8		 V032
S1 cell		 V146
S1 cell		 V008
S2-DRSC		 V145
S2-DRSC		 V067
S2-NP		 V020
S2R+ cell		 V025
S2R+ cell		 V074
S3		 V128
S3 		V011
Sg4		 V133
Sg4 		T004
OSC-4N		 T005
89-4N
............................................................GTATCGTGTTCCAGTGGTTG..................................................................................................... 20 3 6 8.50 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 45 0 0 0 0 0 1 3 0 0
...........................................................GGTATCGTGTTCCAGTGGTTG..................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................TCGTGTGCCAGTGGTTGGTGA................................................................................................. 21 3 6 0.50 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0
................................................................CGTGTGCCAGTGGTTGGTGAC................................................................................................ 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................CGAAAGCCGAAAATTTTCAAG.................................................. 21 0 20 0.30 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AGCCGAAAATTTTCAAGTAAA.............................................. 21 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................AATATAAACAAAGCGAATTATA......... 22 1 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AAGCCGAAAATTTTCAAGTAA............................................... 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................GTATCGTGTTCCAGTGGTT...................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................TGTATCGTGTGCCAGTGGTTG..................................................................................................... 21 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CCGAAAATTTTCAAGCAAAA............................................. 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................CGAAAGCCGAAAATTTTCCAG.................................................. 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................CGAAAGCCGAAAATTTTCACG.................................................. 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................CAAAAATGGCTAACTATATAA........................ 21 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CCGAAAATTTTCAAGTAAAA............................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CCGAAAATTTTCGAGTAAAA............................................. 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................AGTGGGTCCTAAATTCAAGGC...................................................................... 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................CAGTGGTTGATCACGAGTTAG......................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................GGCGAAAGCCGAAAATTTTCA.................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................ATAAACAAAGCGAATTATAAT....... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CAGAAAATTTTCAAGTAAAAC............................................ 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ACAGTTTTTGATCACGAGTGA.......................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................CGAAAACTTTCAAGTAAAACAAAAA....................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TAAACAAAGCGAATTATAACA...... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................CGAAAGCCGAAAATTTTCAA................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AACAAAGCGAATTATAATACA.... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................CGAAAGCCGAAAATTTTCCAT.................................................. 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TGGTTGATCACGAGTCAGTC....................................................................................... 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GCGAAAGCCGAAAATTTTCA.................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................CAAAAATGCCCAACCATATAA........................ 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................AACGCCGAAAATTTTCAAGTA................................................ 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AAAAATGCCCAACCATATGAA....................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TAAAACAAAAATGCCTAACTA............................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate miRBase ID Alignment
dm3 chrUextra:25300070-25300250 + NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGGAGAAGGGT-TTCGTGTGA-CAGTGGTTGATCACGAGTTAGTCGGTCCTAAGTTCAAGGCGAAAGCCG-AAAATTTTCAAGTAAAACAAAAATGCC--------------------------TAAC-------TATATAA------------AC------AAA-GCGAATTATAATACACTTG
droSim3 chrU_M_4332:733-863 - -------------------------------------------------AGTGGAGAAGGGT-TTCGTGTGA-CAGTGGTTGATCACGAGTTAGTCGGTCCTAAGTTCAAGGCGAAAGCCG-AAAATTTTCAAGTAAAACAAAAATGCC--------------------------TAAC-------TATATAA------------AC------AAA-GCGAA-TATAATACACTTG
droSec2 scaffold_4075:426-557 + -------------------------------------------------AGTGGAGAAGGGT-TTCGTGTGAACAGTGGTTGATCACGAGTTAGTCGGTCCTAAGTTCAAGGCGAAAGCCG-AAAATTTTCAAGTAAAACAAAAATGCC--------------------------TAAC-------TATATAA------------AC------AAA-GCGAA-TATAATACACTTG
droYak3 v2_chrUn_225:340-471 + -------------------------------------------------AGTGGAGAAGGGT-TTCGTGTGAACAGTGGTTGATCACGAGTTAGTCGGTCCTAAGTTCAAGGCGAAAGCCG-AAAATTTTCAAGTAAAACAAAAATGCC--------------------------AAAC-------TACATAA------------A-------AAA-GCGAATTATAATACACTTG
droEre2 scaffold_4512:190197-190328 - -------------------------------------------------AGTGGAGAAGGGT-TTCGTGTGAACAGTGGTTGATCACGAATTAGTCGGTCCTAAGTTCAAGGCGAAAGCCG-AAAATTTTCAAGTAAAACAAAAATGCC--------------------------AAAT-------TATATAA------------AC------AAA-GCGAA-AATAATACACTTG
droEug1 scf7180000408050:587-713 - -------------------------------------------------AGTGGAGAAGGGT-TTCGTGTGAACAGTGGTTGATCACGAGTTAGTCGGTCCTAAGTTCAAGGCGAAAGCCG-AAAATTTTCAAGTAAAAA-------CT--------------------------GAAA-------TATACAA------------AT-A----AAAGCTGGA-AATAATATACTTG
droBia1 scf7180000298283:164-308 - -------------------------------------------------AGTGGAGAAGGGT-TTCGTGTGAACAGTGGTTGATCACGAGTTAGTCGGTCCTAAGTTCAAGGCGAAAGCCG-AAAATTTTCAAGTAAAATACAAATGCC--------------------------AAACAAATATATATATTA------------TATAAAATCTA-GCTAA-ATTAATATACTTG
droTak1 scf7180000411785:649-780 - -------------------------------------------------AGTGGAGAAGGGT-TTCGTGTGAACAGTGGTTGATCACGAGTTAGTCGGTCCTAAGTTCAAGGCGAAAGCCG-AAAATTTTCAAGTAAAACCAAAAACGC--------------------------AATA-------TATACAA------------AT------CAA-GCTAA-TATAATATACTTG
droEle1 scf7180000487776:706-851 - -------------------------------------------------AGTGGAGAAGGGT-TTCGTGTGAACAGTGGTTGATCACGAGTTAGTCGGTTCTAAGTTCAAGGCGAAAGCCG-AAAATTTTCAAGTAAAACAAAAA-G-CAAACTATTAAGAAACACAAATAA-------------------TA------------AT-AA---AAG-GCAAA-AATAATATACTTG
droRho1 scf7180000764684:596-735 - -------------------------------------------------AGTGGAGAAGGGT-TTCGTGTGAACAGTGGTTGATCACGAGTTAGTCGGTCCTAAGTTCAAGGCGAAAGCCGAAAAATTTTCAAGTAAAACCAAAAAGCG--------------------------AATA-----TATATATAT------------AC-AAA-TAAT-GCCAATAATAATATACTTG
droFic1 scf7180000450076:840-975 + -------------------------------------------------AGTGGAGAAGGGT-TTCGTGTGAACAGTGGTTGATCACGAGTTAGTCGGTCCTAAGTTCAAGGCGAAAGCCG-AAAATTTTCAAGTAAAAAACTAATGAC--------------------------TTAA---TAAATATATAT------------AC------AAG-CCAAA-AATAATATACTTG
droAna3 scaffold_8078:263-384 + -------------------------------------------------AGTGGAGAAGGGT-TTCGTGTGAACAGTGGTTGATCACGAGTTAGTCGGTCCTAAGTTCAAGGCGAAAGCCG-AAAATTTTCAAGTAAAAATAAAAT-----------------------------TTAC-------TATAT--------------------------GTAAA-AATTATATACTTG
droBip1 scf7180000393153:5437-5560 - -------------------------------------------------AGTGGAGAAGGGT-TTCGTGTGAACAGTGGTTGATCACGAGTTAGTCGGTCCTAAGTTCAAGGCGAAAGCCG-AAAATTTTCAAGTAAAAATAAATA-----------------------------------------TTACAA------------TT------ATT-GTGAA-AATTATATACTTG
dp5 Unknown_singleton_2130:123-257 + -------------------------------------------------AGTGGAGAAGGGT-TTCGTGTGAACAGTGGTTGATCACGAGTTAGTCGGTCCTAAGTTCAAGGCGAAAGCCG-AAAATTTTCAAGTAAAAAATCAGTGAG--------------------------TAA----------TATTGTCAAATCTTTTA-------------TGAT-TTTTAAATACTTG
droPer2 scaffold_271:20398-20532 + -------------------------------------------------AGTGGAGAAGGGT-TTCGTGTGAACAGTGGTTGATCACGAGTTAGTCGGTCCTAAGTTCAAGGCGAAAGCCG-AAAATTTTCAAGTAAAAAATCAGTGAG--------------------------TAA----------TATTGTCAAATCTTTTA-------------TGAT-TTTTAAATACTTG
droWil2 scf2_1100000003192:1711-1835 + -------------------------------------------------AGTGGAGAAGGGT-TTCGTGTGAACAGTGGTTGATCACGAGTTAGTCGGTCCTAAGTTCAAGGCGAAAGCCG-AAAATTTTCAAGTT--TCAAAAATGTC--------------------------AAAG-------GAAATAA------------T-------A------AATAATAAAACACTTG
droVir3 scaffold_5278:849-981 + -------------------------------------------------AGTGGAGAAGGGT-TTCGTGTGAACAGTGGTTGATCACGAGTTAGTCGGTCCTAAGTTCAAGGCGAAAGCCG-AAAATTTTCAAGTAAAGA-AAAAT--C--------------------------TAAA---TATATTTATCA------------TC------TAA-CCGAT-TTTTATACACTTG
droMoj3 scaffold_6499:165666-165810 - -------------------------------------------------AGTGGAGAAGGGTTTTCGTGTGAACAGTGGTTGATCACGAGTTAGTCGGTCCTAAGTTCAAGGCGAAAGCCGGAAAATTTTCAAGTAAAGA-AAAA--TCAAAATA--AATAAACAAAAATGTGCCTAAT-------TAT-----------------------------CGAT-TTTTATACACTTG

Generated: 02/13/2013 at 05:25 PM