ID:

dme_322

 Coordinate:

chrX:10280929-10281000 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend:maturestarmismatch in alignmentmismatch in read

Predicted structure

-18.2 -18.2 -18.1

Flybase annnotation

unknown

Sense Strand Reads

AAAAATCATTTGGGAGACATTAGCGCAGGACAGAGATGGCGTGCTTAACAGCGCGATCACTGTTAGTATTATGTAAACGCTAATGAGCGTAGCGTAGATGCTGTCGCTGTTGTTGTTGTTGTTTTTATGGTTTTTGCTGTTTTTCAAGAGGAGCAATGAAAATCAATTAAAA
**************************************************..(((((.((.(((((((((((((..(((((....))))).)))).)))))))..)).)).)))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V085
CME W2 wing disc		 V135
CME W2 (wing disc line)		 V026
1182-4H cell		 V147
1182-4H cell		 V009
CMEL1		 V126
CME L1 		V028
CMEW1 Cl.8+ cell		 V033
CMEW1 Cl.8+ cell		 V091
fGS/OSS total  		 V127
G2		 V019
GM2 cell		 V031
GM2 cell		 V018
Kc167 cell		 V024
kc167 cell		 V073
mbn2 		V148
mbn2 		V075
ML-DmBG1-C1		 V129
ML-DmBG1-c1		 V076
ML-DmBG3-C2		 V130
ML-DmBG3-c2 		V034
ML-DmD16c3 cell		 V131
ML-DmD16-c3 		V021
ML-DmD21 cell		 V010
MLDmD20c5		 V036
ML-DmD20c5 cell		 V027
ML-DmD21 cell		 M005
ML-DmD32 cell		 M006
ML-DmD32 		V022
ML-DmD32 cell		 V035
ML-DmD32 cell		 V132
ML-DmD32 		V030
ML-DmD8 cell		 V134
ML-DmD8 		V029
ML-DmD9 cell		 V125
ML-DmD9		 M029
OSC cells (nuclear)		 M030
OSC cells (cytoplasmic)		 M031
OSC cells (whole cell)		 V144
OSC		 OSS2
OSS_s2		 OSS6
OSS_s6		 OSS7
OSS_s7		 OSS8
OSS_s8		 V032
S1 cell		 V146
S1 cell		 V008
S2-DRSC		 V145
S2-DRSC		 V067
S2-NP		 V020
S2R+ cell		 V025
S2R+ cell		 V074
S3		 V128
S3 		V011
Sg4		 V133
Sg4 		T004
OSC-4N		 T005
89-4N
....................................................................................................CTGTCGCTGTTGTTGTTGTTG................................................... 21 0 3 14.33 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................GCTGTCGCTGTTGTTGTTGTT.................................................... 21 0 3 7.00 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................TTTTGTGGTTTTTGCTGTAT.............................. 20 2 5 4.20 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................TTTTGTGGTTTTTGCTGTTTT............................. 21 1 2 2.50 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTTTGTGGTTTTTGCTGTATT............................. 21 2 4 2.25 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................ATGAGCGTAGCGTAGATG........................................................................ 18 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AGCGCAGGACAGAGATGGCG................................................................................................................................... 20 0 1 2.00 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTTTGTGGTTTTTGCTGTATG............................. 21 3 20 1.40 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GAGAGGGATGGCGTGCTTATC........................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................CGCAGGACAGAGATGGCGTG................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CAGAGATGCGGTGCTTGACAG......................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................AGCGTACATGATGTCGCTGGT............................................................. 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................GAGATGGAGTGCTGATCAGCGC...................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TGCTTAACAGCACGATTACCG.............................................................................................................. 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TAGCTGAGGACACAGATGGCG................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GACAGAGATGGCGTGCTTAACA.......................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................CTGTTGTTGTTGTCGTTTTTAT............................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GCTCACGACAGAGATGGCGTT................................................................................................................................. 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ATGTTAGGATTATGTAATCGCT........................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................TTAGCGGAGGACTGATATGGC.................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTTTGTGGTTTTTGCTGTTTG............................. 21 2 9 0.89 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TGTCGCTGTTGTTGTTGTTG................................................... 20 0 5 0.80 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TGCTGTCGCTGTTGTTGTTG...................................................... 20 0 5 0.80 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TGCTGTCGCTGTTGTTGTTGTT.................................................... 22 0 3 0.67 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CAGAGATGACTTGCTTGACAG......................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AAAGAGCGTGGCGTAGACGCT...................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TGAGCGCAGCGTAGTTGCTGG.................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................TTTTGTGGTTTTTGCTGTTT.............................. 20 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTTGATGGTTTTTGCTGTTTG............................. 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TTGGCGCAGGACAGGGAAGGC.................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................CATAGATGGGGTGCTTGACA.......................................................................................................................... 20 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TGCTGTCGCTGTTGTTGTTGT..................................................... 21 0 5 0.40 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CTGTCGCTGTTGTTGTTGT..................................................... 19 0 5 0.40 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTTGGTGGTTTTTGCTGTATT............................. 21 3 20 0.35 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................CTGTCGCTGTTGTTGTTGTT.................................................... 20 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GTTGTTATTTTTATGGTGTTT..................................... 21 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GTTTAGGCAGTTTTTCAAGAG...................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TGACCGGAGGACAGAGATGGC.................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TGGTTCTATGGTTTTTGCCGT................................ 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................TTTTTGTAGTTTTTATAGTTTTTGC................................... 25 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TTACCGCAGGACTGAGACGGC.................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTTGGTGGTTTTTGCTGTTT.............................. 20 2 10 0.30 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGGTGTTTTTATGGTTTTT..................................... 19 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................CATTAGCGGAAGGCAGAGATG...................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TGGTAGTATGATGTAATCGC............................................................................................ 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................AGAGATGAGGTGCTTAATAGC........................................................................................................................ 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................AGAGATGGTGTGCTTGATAGC........................................................................................................................ 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................TAAAGCGGAGCAATGAACATC........ 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTTTGTGGTTTTAGCTGTTT.............................. 20 2 8 0.25 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TGAGGGATGCGTAGATGCTG..................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GCTTTTTCAAGAGCAGCAATG.............. 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................TGCTGTCGCTGTTGTTGTT....................................................... 19 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................CTGTCGCTGTTGTTGTTG...................................................... 18 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................ACATAGATGGCGTGTTTGACA.......................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................AGCATTAGTATTATGTAAACG............................................................................................. 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...ATTCATTTGGGAGATATAAGC.................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................GCTGTCGCTGTTGTTGTTGTTT................................................... 22 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TATCGTAGGTGCTGTGGCTGT.............................................................. 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTTGGTGGTTTTTGCTGTTTT............................. 21 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................GATGCGCTCGCTGTTGTTGTTG...................................................... 22 2 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................GGTAGAGTAGATGATGTCGC................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................GTTGGTATTATGTGAACGTT........................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................GTCGCTGTTGTTGTTGTTG................................................... 19 0 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................AGAGATCGCGTCCTTAATA.......................................................................................................................... 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................GCTTTTGTGGTTTTTGCTGT................................ 20 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TGGTGTTGTTGTTTTTATGAT......................................... 21 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GCTTTGGTGGTTTTTGCTGTTTT............................. 23 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TAAGCGGAGGACAGAGAGGG..................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GCTGTTGTTGTTGTCGTTTTT.............................................. 21 1 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTTGATGGTTTTAGCTGTTTA............................. 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........AGGGAGATATTAGCGCAAG............................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
AGAATTCATTTGGCAGACATT....................................................................................................................................................... 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AGATATTAGGGCAGGACGG........................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................CGAAGATGCTGTCGCTCT.............................................................. 18 2 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TCAGCGGAGGAGAGAGATGG..................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TTAGGGTTTTTGCTGGTTGTC........................... 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................ATTATGGTTGTTGCTGGTTTTC........................... 22 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TGCTGTCGCTGTTGATGTTG...................................................... 20 1 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GTTGTTATTTTTATAGTTTT...................................... 20 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GGTTTTTATGGTTTCTGCTGA................................ 21 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................TGGTACTATTATCTAAACG............................................................................................. 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GCTGTCGTTGTTGTTGTTTTT.............................................. 21 1 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......CTTTTGGGAGACATTAGGTCA................................................................................................................................................. 21 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TCTTTGTGGTTTTAGCTGTTT.............................. 21 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................GCGTTGTTGCTTTTATGGTTT....................................... 21 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TTAGGGTTTTTGCTTTTTATC........................... 21 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TGATGTCGCTGTTGTTGTTG...................................................... 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................AACCCCAATGAGCGTAACGT............................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................TCGCGGGTGTTGTTGTTGATT................................................ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATTTATCGTTTCTGCTGTTTT............................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTTTGTGGTTTTTGCTCTTTT............................. 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................GTTGTAGTTGTTTGTCTGGTT........................................ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TTGTTGTTTTTATGGTGTA...................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AAAAATCATTTGGGAGACATTAGCGCAGGACAGAGATGGCGTGCTTAACAGCGCGATCACTGTTAGTATTATGTAAACGCTAATGAGCGTAGCGTAGATGCTGTCGCTGTTGTTGTTGTTGTTTTTATGGTTTTTGCTGTTTTTCAAGAGGAGCAATGAAAATCAATTAAAA
**************************************************..(((((.((.(((((((((((((..(((((....))))).)))).)))))))..)).)).)))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V085
CME W2 wing disc		 V135
CME W2 (wing disc line)		 V026
1182-4H cell		 V147
1182-4H cell		 V009
CMEL1		 V126
CME L1 		V028
CMEW1 Cl.8+ cell		 V033
CMEW1 Cl.8+ cell		 V091
fGS/OSS total  		 V127
G2		 V019
GM2 cell		 V031
GM2 cell		 V018
Kc167 cell		 V024
kc167 cell		 V073
mbn2 		V148
mbn2 		V075
ML-DmBG1-C1		 V129
ML-DmBG1-c1		 V076
ML-DmBG3-C2		 V130
ML-DmBG3-c2 		V034
ML-DmD16c3 cell		 V131
ML-DmD16-c3 		V021
ML-DmD21 cell		 V010
MLDmD20c5		 V036
ML-DmD20c5 cell		 V027
ML-DmD21 cell		 M005
ML-DmD32 cell		 M006
ML-DmD32 		V022
ML-DmD32 cell		 V035
ML-DmD32 cell		 V132
ML-DmD32 		V030
ML-DmD8 cell		 V134
ML-DmD8 		V029
ML-DmD9 cell		 V125
ML-DmD9		 M029
OSC cells (nuclear)		 M030
OSC cells (cytoplasmic)		 M031
OSC cells (whole cell)		 V144
OSC		 OSS2
OSS_s2		 OSS6
OSS_s6		 OSS7
OSS_s7		 OSS8
OSS_s8		 V032
S1 cell		 V146
S1 cell		 V008
S2-DRSC		 V145
S2-DRSC		 V067
S2-NP		 V020
S2R+ cell		 V025
S2R+ cell		 V074
S3		 V128
S3 		V011
Sg4		 V133
Sg4 		T004
OSC-4N		 T005
89-4N
........................................................................GTAAACGCTAATGAGCGTAGCGTAGA.......................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AAAAATCATCTGGGATACCTT....................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................CGCAGGACATAGATGGCTCGCT............................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AGCGGAGGACACAGTTGGCGT.................................................................................................................................. 21 3 2 1.00 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GCGTAGATGCTGTCGCTCCTGT........................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GGCTTTTTGCTGTTTTTCAAG........................ 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................GTCGCTGTTTTGGTTGTTGTT................................................. 21 2 16 0.75 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................GCTGTCGCTGTTGTTGTTGTT.................................................... 21 0 3 0.67 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TGCTGTCGCTGTTGTTGTTGT..................................................... 21 0 5 0.60 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TAGCGGAGGACACAGCTGGCG................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TATCGTAGATTCTCTCGCTGTT............................................................. 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................CGCGATCACAGTTAGTACT...................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................AAGCCCGATCGCTGTTAGTAT....................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................AGATGGCGTGCTCAATATCGC...................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................AAGCTCGATCGCTGTTAGTAT....................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AGCGGAAGACAGAGTTGGCGT.................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................ACGACAGAGATGTCGTTCTTA............................................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................CAGCTCTATCACTGCTAGTATTA..................................................................................................... 23 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AGCTCAGGACACAGGTGGCGT.................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................GCTGTCGCTGTTGTTGTTGTTG................................................... 22 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGTAGTTTTTCTGGTTTTTGC................................... 21 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AGGAGCATTGAAAATGAATTCA.. 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGCGCGATCGCTTTTGGTATT...................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................GTATTGTCTAAACGCTAATAA...................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................GTCGCTGTTTTTGTTGTTGTT................................................. 21 1 6 0.33 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CTGTCGCTGTTGTTGTTGTTG................................................... 21 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CGCTGTTTTTGTTGTTGTTTT............................................... 21 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................CTCGATAACTGATAGTATTA..................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TGTCGCTGTTGTTGTTGTTG................................................... 20 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............GGAGAGAATAGCGGAGGACA............................................................................................................................................ 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................GCCAGCCCGATCACTGTTAG.......................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CGCTGTTGGGGTTGTTGTTTT............................................... 21 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TCAACCGGAGCAATGAAAATT........ 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................AGATGATGTCGCTCTTGTCGT........................................................ 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CTGTCGCTGTTTTTGTTGTT.................................................... 20 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................CTGTTTTTCCAGCGAAGCAAT............... 21 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CTGACGCTGTTGTTGTTGTTG................................................... 21 1 18 0.11 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0
..............................................................................................................................TTGGTTTATGCTGTTTTCCAA......................... 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TTGGTATTATGTAAAAGCAAA......................................................................................... 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................TGTTGTTTTTGTTGTTTTTACG........................................... 22 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................GGCGCGGTTGTGGTTGTTGTTT................................................ 22 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................GATGCTGTCACTGTTCTT.......................................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GCTGTTTTTGTTGTTGTTTTT.............................................. 21 1 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GCAATAACTGTTATTATTATG................................................................................................... 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................CAGCAATGAAGATCAATTAC.. 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CGCTGTTTGTGTTGTTGTTTT............................................... 21 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TGCTGTCGCTCTTGTTGT........................................................ 18 1 18 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GTTTTTCTGGCTTTTGCTGTG............................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TCGCTGTTTTTGTTGTTGTTA................................................ 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CGCTGTTGGGGTTGTTGTTTA............................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CGTTAGTGAGCGTAGCCT............................................................................. 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GCGCTCTTGGTGTTGTTGTTT................................................ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................GGCGCTGTTTTGGTTGTTGTTT................................................ 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TAGTTGCTGTTTTTATCGTTT....................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AGCTATGAGAATCAACTAA.. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TTGTGGTTGTTCTTTTTAT............................................ 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................GTCGCTGTTAGTGTTGTTGTT................................................. 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AGTCGCTGTTTTTGTTGTTGT.................................................. 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate miRBase ID Alignment
dm3 chrX:10280879-10281050 - AAAA-AT-CATTT-------GGGAGACA-----TTAGCGCAG---GACAGAGAT-GGCGTGCTTAACAGCGCGATCA--CTGTTAGTATTATGTAAA--CGCTAATGAGC-----------G--TAGC-G---------------------------TAGATGC---TG------TCGCTGTT-------------------------GTTGTTGTTGTTTTTATGGTTTTTGCTGTTTT-TCAAGAGGA----GCAATGAAAATCAATTAAAA
droSim3 X:8005295-8005464 - AAAA-AT-CATTT-------GGAAGACA-----TTAGCGCAG---GACAGAGAT-GGCGTGCTTAACAGCGCGATCA--CTGTTAGTGTTATGTAAA--CGCTAATGAGC-----------G--TAGCAG---------------------------TAGATGC---TG------TCGCTCTT-------------------------GT---TGTTGTTGTTATTGTTTTCGCTGTTTT-CCGAGAGGA----GCAATGAAAATCAATTAAAA
droSec2 scaffold_15:978436-978606 - AAAA-AT-CATTAA------AGAAGACA-----TTAGCGCAG---GACAGAGAT-GGCGTGCTTAACAGCGCGATCA--CTGTTAGTGTTATGTAAA--CGCTAATGAGC-----------G--TAGCAG---------------------------TAGATGC---TG------TCGCTCTT-------------------------GT---TGTTGTAGTTATTGTTTTCGCTGTTTT-CCGAGAGGA----GCAATGAAAATCAATTAAAA
droYak3 X:18855204-18855377 - ATAA-ATCCATTT-------GGAAGACG-----TTGGCGCAG---GACAGAGAT-GGCGTGCTTTACAGCGCGATCA--CTGTTAGCGTTATGTAAA--CGCTAATGAGC-----------G--TAACAG---------------------------TAGATGC---TG------TTGCTCTT-------------------------CATCTTGTTGTTGTTGTTGTTTTCGCTGTTTT-CCAAGAGGA----GCAATGAAAATCAATTAAAA
droEre2 scaffold_4690:4855087-4855256 + AAAA-AT-CATTT-------GGAAGACA-----TTAGCGCCG---GACAGAGAT-GGCGTGCTTAACAGCGCGATCG--CTGTTAGCGTTATGTAAA--CGCTAATGAGC-----------G--TAACAG---------------------------TAGATGC---TG------TTGCTGTT-------------------------GT---TATTGTGGTTGTTGTTTTAGCTGTTTT-CCAAGAGGA----GCAATGAAAATCAATTAAAA
droEug1 scf7180000409230:32240-32402 + AAAT-AT-CATT--------GAGAGACA-----ATACAGACGGCTGAAAGAGAT-GGCAGGAGTAACAGCGCGATCA--CTGTTAGCGTTATGTAAA--CGCTAATGAGC-----------G--TAGCAA---------------------------TAGATGT---TG------CTG---TT-------------------------GT------TC---TTGTTGTTGTTGCCGTTTT-CCGAGAGGA----GCAATGAAAATCAATTAAAA
droBia1 scf7180000302126:3125778-3125928 - AAAC-AT-CACTG-------GCGAGA------------GCGA---GAGCGAGAT-GGCGCGACTAACAGCGCGATCG--CTGTAAGCGTTATGTAAA--CGCTAATGAGC-----------G--CAACAG---------------------------CAGGGGC---TG------CTGCTGTT-------------------------GT---------------TGTTGTTGCACTCCT-CCGAGCGGA----GCAATGAAAATCAATTAAAA
droTak1 scf7180000415394:49385-49544 - AAAA-AT-CATT--------GAGAGACA-----GTCG---AT---GAAAGAGAC-GGCACTAGTAACAGCGCGATCG--CTGTTAGCGTTATGTAAA--CGCTAATGAGT-----------G--TAACAG---------------------------TAGATGT---TG------TTGT----------------------------------CGTTTTCGTTGTTTTTGTTGCCGTTTT-CCGAGAGGA----GCAATGAAAATCAATTAAAA
droEle1 scf7180000491087:394277-394430 + AAAA-AT-CATT--------GGGAAACCG----GCGGC--GA---AAGGGAGAT-AGCACCACAAACAGCTCGATCA--CTGTTAGCGTTATGTAAA--CGCTAATGAGC-----------G--TAACAG---------------------------TA--------TG------TCGATGTT-------------------------GT------------TGTTGTTGTTGTTGTTTT-TCGAGAGGA----GCAATGAAAATCAATTAAAA
droRho1 scf7180000778808:47952-48102 - GAAA-AT-CATT--------GCGGGACAG----CCGGC--GA---AAGGGAGAT-GGCACGACTAACAGCACGATCG--CTGTTAGCGTTATGTAAA--CGCTAATGAGC-----------G--TAACAG---------------------------CA--------TG------TCGATGTT-------------------------CT------------TGT---TGTTGTTGTTTT-CCGAGAGGA----GCAATGAAAATCAATTAAAA
droFic1 scf7180000454050:182587-182734 - AAAT-AT-CATT--------GGGAGACAGTCG-TAAGCAGAG--AGAAAGAGAT-AGCACGACTAACAGCACGATCA--CTGTTAGCGTTATGTAAA--GGCTAATGAGC-----------G--TAACAG---------------------------TA--------TG------TGACTGTT-------------------------G------------------------TTGTTTT-CCGAGAGGA----GCAATGAAAATCAATTAAAA
droKik1 scf7180000302698:884185-884346 + AAAATAA-CATT--------GAGA----------------------TCGGAGATCGGCACTGCTAACAGCGC-------CTGTTACCGTTATGTAAA--GGG-AATG-----------------TAA--------------------AGCGCAGATGTTGATGCTACTGCTGCTGCTG---CT-------------------------GA------TGTTGTTTTTGTTGTTGTTTTTGCATCAAGAGGAGCGAGCAATGAAAATCAATTAAAA
droAna3 scaffold_13335:2449840-2450006 + AGAG-AG-GATGAGAGGATTGGGAGAGCA---AGGAGTGAGA---GAGGGAGAT-GGCGCCACTAACAGA--GATCGGCCTGTAACCGTTATGTAAA--GGCTAATGAGA-----------GAACACAACAAGA--CCCGAATGTAAAGCGCAG--------------------------------------------------TTT-G------------------------TTGTT-T-TCGAGAGAA----GCAATGAAAATCAATTAAAA
droBip1 scf7180000396683:122528-122676 - G--------------------------------------CGA---GAGGGAGAT-GGGGCCACTAACAGA--GATCGGTCTGTAAGCGTTATGTAAAAAGGCTAATGAGGCGGAGGGAGGAGAACGG--CAAGA--CTTGAATGTAAAGCGCAG--------------------------------------------------T-------------------T---TGTTGTTCTTTT-CGAGCAGAA----GCAATGAAAATCAATTAAAA
droPer2 scaffold_21:536924-537082 - -------------------------------------------------------------------------------CTGTTAGGGTTATGTAAA--A-CTTATGAGA-----------C--CAGCACGAACCCCTTCGGTGGAAATG-------GAACTTCTGCTGCCGCTGCTG---CTGGTGGCACTGGGCACTGGGCACTGGGG---CACTGTTATTGTTGTTTGCATTTT--T-TTCAGAGAA----GCAATGAAAATCAATTAAAA
droMoj3 scaffold_6496:22352313-22352408 + G----------------------------------------------------------------------CGATTG--CTCTTATTGATTTGTGTG--TGTTGCTTAGT-----------G--TTGGTG---------------------------TTGTTAT---T-------TGTTAGTT-----------------GTTGTTA-GT---TGTTGTTGTCACTGTTGTTGCTATTGT-T--------------------------------

Generated: 02/13/2013 at 10:59 PM