ID:

dme_321

 Coordinate:

chr3R:24666520-24666598 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend:maturestarmismatch in alignmentmismatch in read

Predicted structure

-16.5 -16.2 -15.9

Flybase annnotation

unknown

Sense Strand Reads

GTTGGCTCCAACATGGCCTGGCGGGAATCGGGGACTAGGGATTCGGGGTCTCAGTGGTGCAAGTCAATGCTCCATGGCCTGCAAGGAAAGCAGATAGGAAAACACAGTGAGCGAAGGCACAATTGAGACTCTAGATTGCTATAAATTTAGTGCCGGACCAGGGCGTGGGCTAATTATAG
**************************************************(((((.((((.......(((((..((..((((.......))))...........))..)))))...)))).)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V085
CME W2 wing disc		 V135
CME W2 (wing disc line)		 V026
1182-4H cell		 V147
1182-4H cell		 V009
CMEL1		 V126
CME L1 		V028
CMEW1 Cl.8+ cell		 V033
CMEW1 Cl.8+ cell		 V091
fGS/OSS total  		 V127
G2		 V019
GM2 cell		 V031
GM2 cell		 V018
Kc167 cell		 V024
kc167 cell		 V073
mbn2 		V148
mbn2 		V075
ML-DmBG1-C1		 V129
ML-DmBG1-c1		 V076
ML-DmBG3-C2		 V130
ML-DmBG3-c2 		V034
ML-DmD16c3 cell		 V131
ML-DmD16-c3 		V021
ML-DmD21 cell		 V010
MLDmD20c5		 V036
ML-DmD20c5 cell		 V027
ML-DmD21 cell		 M005
ML-DmD32 cell		 M006
ML-DmD32 		V022
ML-DmD32 cell		 V035
ML-DmD32 cell		 V132
ML-DmD32 		V030
ML-DmD8 cell		 V134
ML-DmD8 		V029
ML-DmD9 cell		 V125
ML-DmD9		 M029
OSC cells (nuclear)		 M030
OSC cells (cytoplasmic)		 M031
OSC cells (whole cell)		 V144
OSC		 OSS2
OSS_s2		 OSS6
OSS_s6		 OSS7
OSS_s7		 OSS8
OSS_s8		 V032
S1 cell		 V146
S1 cell		 V008
S2-DRSC		 V145
S2-DRSC		 V067
S2-NP		 V020
S2R+ cell		 V025
S2R+ cell		 V074
S3		 V128
S3 		V011
Sg4		 V133
Sg4 		T004
OSC-4N		 T005
89-4N
..............................................................................................................GCGAAGGCACACTTGAGAAAC................................................ 21 3 4 2443.25 9773 0 0 1 0 0 2 1 0 24 8 0 0 0 5 79 603 1281 5010 0 6 0 4 0 0 0 1 0 27 0 0 14 1 0 39 0 0 0 0 0 0 0 0 0 0 0 37 103 1120 21 58 5 8 219 1096 0 0
...........................................................................................................GGTGCGAAGGCACACTTGAGA................................................... 21 3 2 561.00 1122 0 0 1 0 0 0 0 0 4 0 0 0 0 1 56 304 112 141 0 0 0 0 0 0 0 3 0 0 0 0 0 1 0 3 0 0 0 0 0 0 0 2 0 0 0 26 22 54 175 115 2 0 80 20 0 0
.............................................................................................................TGCGAAGGCACACTTGAGAA.................................................. 20 3 9 506.11 4555 0 0 0 0 0 0 1 0 7 2 0 0 0 2 63 249 405 3527 1 3 0 3 0 0 0 0 0 4 0 0 2 1 0 9 0 0 0 0 0 0 0 0 0 0 0 1 2 14 27 28 0 4 20 180 0 0
............................................................................................................GTGCGAAGGCACACTTGAGAA.................................................. 21 3 2 197.50 395 0 0 0 0 0 0 1 0 1 0 0 0 0 0 25 89 82 59 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 4 1 0 0 0 0 0 0 0 0 0 0 6 4 9 60 26 1 0 22 4 0 0
.............................................................................................................TGCGAAGGCACACTTGAGA................................................... 19 2 2 138.50 277 0 0 0 0 0 0 1 0 1 0 0 0 0 0 47 44 18 69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 24 42 0 0 9 19 0 0
.............................................................................................................TGCGAAGGCACACTTGAGACA................................................. 21 3 1 65.00 65 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 22 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 7 2 0 0
..............................................................................................................GCGAAGGCACAATTGAGAAAC................................................ 21 2 1 63.00 63 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 4 42 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 0 1 0 0
...............................................................................................................CGAAGGCACAATTGAGAAACG............................................... 21 3 3 54.00 162 0 0 0 0 0 0 0 0 4 0 0 0 0 0 38 9 52 9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19 9 3 1 0 4 13 0 0
..........................................................................................................TGGAGCGAAGGCACACTTGAG.................................................... 21 3 1 40.00 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 31 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 1 2 0 0 0 0 0 0
...............................................................................................................CGAAGGCACACTTGAGACACG............................................... 21 3 2 39.50 79 0 0 0 0 0 0 0 0 8 0 0 0 0 1 3 0 1 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 5 2 6 0 0 9 21 0 0
.............................................................................................................AGCGAAGGCACACTTGAGAAA................................................. 21 3 2 38.50 77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 46 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................GCGAAGGCACACTTGAGAA.................................................. 19 2 2 38.50 77 0 0 0 0 0 0 0 0 1 0 0 0 0 0 7 7 16 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 0 3 0 0 1 8 0 0
..............................................................................................................GCGAAGGCACAATTGAGAAA................................................. 20 2 1 35.00 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 28 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................GGGGCGAAGGCACACTTGAGA................................................... 21 3 1 32.00 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 3 11 1 0 0 0 0 0 0
.............................................................................................................TGCGAAGGCACAATTGAGAAA................................................. 21 3 5 32.00 160 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 128 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0
..............................................................................................................GCGAAGGCACACTTGAGA................................................... 18 1 1 30.00 30 0 0 0 0 0 0 0 0 1 0 0 0 0 0 12 3 4 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0
..............................................................................................................GCGAAGGCACACTTGAGAAACT............................................... 22 3 3 25.67 77 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 22 1 4 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 8 2 0 0 0 8 26 0 0
...........................................................................................................GGAGCGAAGGCACACTTGAGA................................................... 21 2 1 24.00 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 4 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 5 1 2 0 0 0 0 0 0
..............................................................................................................GCGAAGGCACACTTGAGACAC................................................ 21 2 1 22.00 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 2 0 0 0 0 5 0 0 0
............................................................................................................GTGCGAAGGCACACTTGAGA................................................... 20 2 1 16.00 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 1 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0
..............................................................................................................GCGAAGGCACACTTGAGACA................................................. 20 2 1 16.00 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................GGCGCGAAGGCACACTTGAGA................................................... 21 3 1 13.00 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 8 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0
..........................................................................................................TGGTGCGAAGGCACAATTGAG.................................................... 21 3 1 12.00 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
..............................................................................................................GCGAAGGCACACTTGAGAGAC................................................ 21 3 1 11.00 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0
..............................................................................................................GCGAAGGCACATTTGAGAAAC................................................ 21 3 3 8.67 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 0 2 0 0
..............................................................................................................GCGAAGGCACAGTTGAGAAAC................................................ 21 3 3 8.00 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0
..............................................................................................................GCGAAGGCACACTTGAGAAGC................................................ 21 3 3 8.00 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 10 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 4 0 0
..........................................................................................................TGGAGCGAAGGCACACTTGAGA................................................... 22 3 1 8.00 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
............................................................................................................GTGCGAAGGCACAATTGAGAA.................................................. 21 2 1 8.00 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GGTGCGAAGGCACAATTGAGA................................................... 21 2 1 7.00 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 3 0 0 0 0 0 0
.............................................................................................................TGCGAAGGCACACTTGAG.................................................... 18 2 5 6.80 34 0 0 0 0 0 0 0 0 1 0 0 0 0 1 5 1 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 7 0 0 0 0 0 0
.............................................................................................................TGCGAAGGCACACTTGAGAAT................................................. 21 3 5 6.80 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 1 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 2 0 0
.............................................................................................................TGCGAAGGCACAATTGAGAA.................................................. 20 2 2 6.50 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................AGCGAAGGCACACTTGAGAAAC................................................ 22 3 1 6.00 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................GCGAAGGCACACTTGAGAACC................................................ 21 3 2 6.00 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................TGCGAAGGCACAATTGAGAAAC................................................ 22 3 1 6.00 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................GTGCGAAGGCACACTTGAGAAT................................................. 22 3 1 5.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
..............................................................................................................GCGAAGGCACACTTGAGATAC................................................ 21 3 1 5.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0
...............................................................................................................CGAAGGCACAATTGAGAAA................................................. 19 2 1 5.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................CGAAGGCACACTTGAGAA.................................................. 18 2 8 4.63 37 0 0 0 0 0 0 0 0 0 1 0 0 0 0 13 2 4 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 0 0 2 0 0 0
...........................................................................................................GGTGCGAAGGCACACTTGAG.................................................... 20 3 5 4.60 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 4 9 0 0 0 0 0 0
...............................................................................................................CGAAGGCACACTTGAGAATCG............................................... 21 3 3 4.33 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0
.............................................................................................................TGCGAAGGCACACTTGAGT................................................... 19 3 18 4.22 76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 7 17 0 0 0 2 0 0
............................................................................................................GCGCGAAGGCACACTTGAGAA.................................................. 21 3 2 4.00 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................GCGAAGGCACAATTGAGAAACG............................................... 22 3 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
............................................................................................................GAGCGAAGGCACACTTGAGAA.................................................. 21 2 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................TGTGCGAAGGCACACTTGAGA................................................... 21 2 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0
...............................................................................................................CGAAGGCACAATTGAGAAAC................................................ 20 2 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TTGTGCGAAGGCACACTTGAG.................................................... 21 3 4 3.75 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 4 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GCGAAGGCACACTTGAGATA................................................. 20 3 4 3.75 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
..............................................................................................................GCGAAGGCACACTTGAGAAG................................................. 20 3 7 3.57 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 9 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................GCGAAGGCACACTTGAGAGA................................................. 20 3 7 3.29 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 8 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0
...........................................................................................................GGTGCGAAGGCACAATGGAGA................................................... 21 3 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0
.............................................................................................................CGCGAAGGCACAATTGAGAAA................................................. 21 3 2 3.00 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................TGCGAAGGCACACTTGAGACAC................................................ 22 3 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
...........................................................................................................GGCGCGAAGGCACAATTGAGA................................................... 21 2 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................GGGTGCGAAGGCACACTTGAG.................................................... 21 3 2 3.00 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................GCGACGGCACACTTGAGACAC................................................ 21 3 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0
.............................................................................................................AGCGAAGGCACAATTGAGAAA................................................. 21 2 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AGCGAAGGCACACTTGAGAA.................................................. 20 2 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TGGAGCGAAGGCACAATTGAG.................................................... 21 2 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................CGAAGGCACAATTGAGAAACA............................................... 21 3 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................CCTAGCGCGAATCCGGGACT............................................................................................................................................... 20 3 4 2.75 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................GTGTGAAGGCACACTTGAGA................................................... 20 3 6 2.67 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 4 0 0 0 0 0 0 0 0 0
...........................................................................................................AGTGCGAAGGCACACTTGAGA................................................... 21 3 2 2.50 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................CGAAGGCACACTTGAGACCCG............................................... 21 3 2 2.50 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0
.............................................................................................................TGCGAAGGCACAATTGAGAAC................................................. 21 3 4 2.25 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GTTGGCTCCAACATGGCCTGGCGGGAATCGGGGACTAGGGATTCGGGGTCTCAGTGGTGCAAGTCAATGCTCCATGGCCTGCAAGGAAAGCAGATAGGAAAACACAGTGAGCGAAGGCACAATTGAGACTCTAGATTGCTATAAATTTAGTGCCGGACCAGGGCGTGGGCTAATTATAG
**************************************************(((((.((((.......(((((..((..((((.......))))...........))..)))))...)))).)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V085
CME W2 wing disc		 V135
CME W2 (wing disc line)		 V026
1182-4H cell		 V147
1182-4H cell		 V009
CMEL1		 V126
CME L1 		V028
CMEW1 Cl.8+ cell		 V033
CMEW1 Cl.8+ cell		 V091
fGS/OSS total  		 V127
G2		 V019
GM2 cell		 V031
GM2 cell		 V018
Kc167 cell		 V024
kc167 cell		 V073
mbn2 		V148
mbn2 		V075
ML-DmBG1-C1		 V129
ML-DmBG1-c1		 V076
ML-DmBG3-C2		 V130
ML-DmBG3-c2 		V034
ML-DmD16c3 cell		 V131
ML-DmD16-c3 		V021
ML-DmD21 cell		 V010
MLDmD20c5		 V036
ML-DmD20c5 cell		 V027
ML-DmD21 cell		 M005
ML-DmD32 cell		 M006
ML-DmD32 		V022
ML-DmD32 cell		 V035
ML-DmD32 cell		 V132
ML-DmD32 		V030
ML-DmD8 cell		 V134
ML-DmD8 		V029
ML-DmD9 cell		 V125
ML-DmD9		 M029
OSC cells (nuclear)		 M030
OSC cells (cytoplasmic)		 M031
OSC cells (whole cell)		 V144
OSC		 OSS2
OSS_s2		 OSS6
OSS_s6		 OSS7
OSS_s7		 OSS8
OSS_s8		 V032
S1 cell		 V146
S1 cell		 V008
S2-DRSC		 V145
S2-DRSC		 V067
S2-NP		 V020
S2R+ cell		 V025
S2R+ cell		 V074
S3		 V128
S3 		V011
Sg4		 V133
Sg4 		T004
OSC-4N		 T005
89-4N
..............................................................................................................GCGAAGGCACACTTGAGAAAC................................................ 21 3 4 1136.25 4545 0 0 1 3 0 0 0 0 7 0 0 0 0 1 50 623 1587 1104 2 0 0 3 0 0 0 0 0 2 0 0 4 0 0 34 0 0 0 0 0 0 0 0 0 0 0 64 172 106 116 113 7 2 442 102 0 0
............................................................................................................GTGCGAAGGCACACTTGAGAA.................................................. 21 3 2 608.00 1216 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 55 236 467 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 14 10 26 51 11 3 1 309 23 0 0
...........................................................................................................GGTGCGAAGGCACACTTGAGA................................................... 21 3 2 229.50 459 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 7 129 80 2 0 0 0 0 0 0 0 0 1 0 0 2 1 0 8 0 0 0 2 0 0 0 0 0 0 0 3 8 3 103 7 0 1 82 6 0 0
............................................................................................................GTGCGAAGGCACACTTGAGA................................................... 20 2 1 66.00 66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 31 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 14 2 1 0 7 0 0 0
..............................................................................................................GCGAAGGCACACTTGAGAACC................................................ 21 3 2 38.00 76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 0 3 0 0 1 0 0 0
...............................................................................................................CGAAGGCACACTTGAGACACG............................................... 21 3 2 28.50 57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 48 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0
...............................................................................................................CGAAGGCACACTTGAGAATCG............................................... 21 3 3 28.33 85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 79 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 2 0 0 1 0 0 0
..............................................................................................................GCGAAGGCACAATTGAGAAAC................................................ 21 2 1 26.00 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 22 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
..............................................................................................................GCGAAGGCACACTTGAGAATC................................................ 21 2 1 25.00 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
.............................................................................................................AGCGAAGGCACACTTGAGAAAC................................................ 22 3 1 24.00 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 5 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 1 0 0 4 1 0 0
.............................................................................................................AGCGAAGGCACACTTGAGAAA................................................. 21 3 2 23.00 46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 31 5 0 0
..............................................................................................................GCGAAGGCACACTTGAGACAC................................................ 21 2 1 18.00 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TGCGAAGGCACACTTGAGAA.................................................. 20 3 9 17.22 155 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 29 18 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 3 13 5 0 0 35 4 0 0
...........................................................................................................TGTGCGAAGGCACACTTGAGAA.................................................. 22 3 2 16.50 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 1 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 3 0 0 0 11 0 0 0
..............................................................................................................GCGAAGGCACACTTGAGAGAC................................................ 21 3 1 15.00 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GCGAAGGCACACTTGAGAAGC................................................ 21 3 3 14.33 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 30 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 2 0 0 0
...............................................................................................................CGAAGGCACACTTGAGAATC................................................ 20 2 1 12.00 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................CGAAGGCACAATTGAGAAACG............................................... 21 3 3 9.67 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 18 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0
...............................................................................................................CGAAGGCACACTTGAGACTCG............................................... 21 2 1 9.00 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TGCGAAGGCACACTTGAGA................................................... 19 2 2 7.50 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 5 0 0 0 1 0 0 0
..............................................................................................................GCGAAGGCACACTTGAGATAC................................................ 21 3 1 7.00 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GCGAAGGCACACTTGAGAA.................................................. 19 2 2 7.00 14 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 3 3 0 0 3 0 0 0
..........................................................................................................GGGTGCGAAGGCACACTTGAG.................................................... 21 3 2 7.00 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 3 0 0 0 0 0 0
..............................................................................................................GCGAAGGCACAGTTGAGAAAC................................................ 21 3 3 5.67 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
..............................................................................................................GCGAAGGCACAATTGAGAAA................................................. 20 2 1 5.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
...............................................................................................................CGAAGGCACACTTGAGAATCT............................................... 21 2 1 5.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................CGAAGGCACACTTGAGACAC................................................ 20 2 1 5.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GCGAAGGCACAATTGAGAAACG............................................... 22 3 1 5.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................GCGAAGGCACATTTGAGAAAC................................................ 21 3 3 4.00 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0
..............................................................................................................GCGAAGGCACACTTGAGACGC................................................ 21 2 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................GGGTGCGAAGGCACACTTGAGA................................................... 22 3 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
............................................................................................................GTGCGAAGGCACAATTGAGAA.................................................. 21 2 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................GCGAAGGCACACTTGAGAATCG............................................... 22 3 2 3.50 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GGTGCGAAGGCACACTTGAG.................................................... 20 3 5 3.20 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 1 0 0 0 0 0 0
..............................................................................................................GCGAAGGCACACTTGAGACTC................................................ 21 1 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................CGAAGGCACAATTGAGAATCG............................................... 21 2 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................TGCGAAGGCACACTTGAGACA................................................. 21 3 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
..............................................................................................................GCGAAGGCACAGTTGAGAACC................................................ 21 3 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................CGAAGGCACAATTGAGAAAC................................................ 20 2 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GCGCAGGCACACTTGAGACAC................................................ 21 3 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................GCGGAGGCACACTTGAGACAC................................................ 21 3 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................GTGCGAAGGCACACTTGAGAG.................................................. 21 3 2 2.50 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0
..............................................................................................................GCGAAGGCACACTTGAGACACG............................................... 22 3 2 2.50 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AGTGCGAAGGCACACTTGAGA................................................... 21 3 2 2.50 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0
.............................................................................................................TGCGAAGGCACAATTGAGAAA................................................. 21 3 5 2.00 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate miRBase ID Alignment
dm3 chr3R:24666470-24666648 + GTTGGCTCCAACATGGCCTG---------------------------------G-----CGGGAATCGGGGA----------------CTA----------------------GGGATT--------CGGGGT-CTCAG--TG---------GT-GC-AAGTCAATGCTCCATGGCCTGCAA-GGAAAGCAGATAGG---AAA-------ACACAGTGAGCGAAGGCA-CAATTGAGACTCTA--GATTGCTATAAATTTAGTG--------------CCGGACCAGGGCG--TGGGCTAATTATAG----------
droSim3 3R:24349617-24349795 + GTTGGCTCCAACATGGCCTG---------------------------------G-----CGGGGATCGGGGA----------------CTG----------------------GGGATT--------CGGGAT-CTCAG--TG---------GT-CC-AAGTCAATGCTCCATGGCCTGCAA-GGAAAGCAGATAGA---AAA-------ACACAGTGAGCGAAGGCA-CAATTGAGACTCTA--GATTGCTATAAATTTAGTG--------------CCGGACCAGGGCG--TGGGCTAATTATAG----------
droSec2 scaffold_4:3529937-3530115 + GTTGGCTCCAACATGGCCTG---------------------------------G-----CGGGGATCGGGGA----------------CTG----------------------GGGATT--------CGGGAT-CTCAG--TG---------GT-CC-AAGTCAATGCTCCATGGCCTGCAA-GGAAAGCAGATAGA---AAA-------GCACAGTGAGCGAAGGCA-CAATTGAGACTCTA--GATTGCTATAAATTTAGTG--------------CCGGACCAGGGCG--TGGGCTAATTATAG----------
droYak3 3R:21838677-21838875 - GTTGGCTCCAGCATGGTCTG---------------------------------G-----CGGGGATCGGGTATCGGGGTTC--GGGGGCTG----------------------GGGATT--------CAGGGT-GTCAG--TG---------GT-CC-GAGTCAATGCTCCATGGCCTGCAA-GGGAAGCAGATAGGA--AAGGAAGA--ACGCAGTGAGTGCGGGCA-CAATTGAGACT--GTAGATTGCTATAAATTTAGTG--------------CCGGACCAGGGCG--TGGGCTAATTATAG----------
droEre2 scaffold_4820:3370855-3371034 - GTTGGCTCCAACATGGCCTG---------------------------------G-----CGGGGATCGGGGA----------------CAG----------------------GGGATT--------TGGGAT-CTCAG--TG---------GT-CC-GAGTCAATGCTCCATGGCCTGCAA-GGGAAGCAGATAGGA--AAA-------ACGCAGTGAGTGAAGGCA-CAATTGAGACTCTA--GATTGCTATAAATTTAGTG--------------CCGGACCAGGGCG--TGGGCTAATTATAG----------
droEug1 scf7180000409787:917507-917690 - GTGGGTTCCAACATGACCAG---------------------------------G-----CAGGGCTCGGGGA----------------TTG----------------------GGGATT--------CGGGATGTTCAG--TG---------GC-TC-AAGTCAATGCTCCATGGCCTGCAAAGGGAAGGAGACACGG--AAA-------ACAAAGTGAGAGGAGGCG-CAATTGAGACTTTATAAATTGCTATAAATTTAGTG--------------CCGGACCAGGGCG--TGGGCTAATTATAG----------
droBia1 scf7180000302075:2094329-2094495 - GTTGGCTCCAACATGGT-------------------------------------------GGGGATCGGGGA----------------CT--------------------------------------GGGATTCTCAC--AG---------GT-CC-GAGTCAATGCTCCATGGCCTGCAA-GA-----AGATGGGGTAAAA-------CCGAAGTGAGAGGCGGCG-CAATTGAGACTTTATAAATTGCTATAAATTTAGTG--------------CCGGACCAGGGCG--TGGGCTAATTATAG----------
droTak1 scf7180000415700:213200-213383 + GTTGGCTCCAACATGACTTG---------------------------------GCTT-GCGGGGATCGGGGATCGGGGCTT--GGA-------------------------------------------GGTTTCTCAG--AG---------AC-AC-AAGTCAATGCTCCATGGCCTGCAGAGGAAAGAAG---G----GAG-------ATAAAGTAAGAGGCGGCG-CAATTGAGACTCTATAAATTGCTATAAATTTAGTG--------------CCGGACCAGGGCG--TGGGCTAATTATAG----------
droEle1 scf7180000491280:3236779-3236953 - GTTGGTTCCAACATGGCCTG---------------------------------G-----CGGGGATTGGGGT----------------TC-------------------------------------GGAGATGCTTAG--AG---------AC-CC-AAGTCAATGGTCCATGGCCTGCAA-GAAAGGAAGATGGGG--ATAA------GT-AAGTAAGA---GGCG-CAATTGAGACTCTATAAATTGCCATAAATTTAGTG--------------CCGGACCAAGGCGTGTGGGCTAATTATAG----------
droRho1 scf7180000779501:400498-400671 + GTTGGCTCCAACATGGCCTG---------------------------------G-----CGGGGATTGGGGA---------------------------------------------TT--------TCAGATGTCCAGAGTG---------TC-AA-CAGTCAATGATCCATGGCCTGCGA-GGAGGGGAGACAGGG--AAA-------ACTAAGTAAGA---GGCG-CAATTGAGACTATATA-GTTGCTATAAATTTAGTG--------------CCGGACCAGGGCG--TGGGCTAATTATAG----------
droFic1 scf7180000454073:3684694-3684896 - GTGGGCTCCAGCATGGTCAG---------------------------------------TGGGGATCTGCAG----------------CTGGAGCGGGAGCGGCTAAGGGAGCGGGATT--------CGGGATGCTCAC--TG---------CG-CG-GAGTCAATGCTCCATGGCCTGCAA-CGGTGGGAGATAGAG--TAGATTGAGTACAGAGTGAGA-------------GGGACTCTATAAATTGCAATAGACTTGGTG----------GTGGCCGGGCCAGGGCG--TGGGCTAATTATAG----------
droKik1 scf7180000302639:2723774-2723938 - GTTGGCTCCAACATAGCCAG---------------------------------G-----CGGGGATAGGGGA----------------TTT----------------------GGA-G---------CGGGGTTCTTAG--TG---------CC-TT-AAGTCAATGCTCCATGGCCTGTAG-GAG---------------AG-------ACGAAGGGAAA---GGCA-AAATTGAGACTTTATAAATGACTATAAATTTAGTG--------------CCGAACCGGGGCG--TGGGCTAATTATAG----------
droAna3 scaffold_13340:17464027-17464181 + GTTGGCTCCAACATAGCTC------------------------------------------------------------------------------------------------------------CGGGATTTTCAGAACC---------GC-AC-AAGTCAATGCTCCATGGCCTGCAA-AAAGAGGA--GGG----GCG-------A--CAATGAGA---GGCG-AC-------ATCTAGAAATGGCTGCAAATTCAGTGGACCAGGCGAG----TGGACCTAGGAG--TGGGCTAATTATAG----------
droBip1 scf7180000396424:965842-965994 + GTTGGCTCCAACATGGCTT------------------------------------------------------------------------------------------------------------CGGGATTTGCAGAATC--------GCACGC-AAGTCAGTGCTCCATGGCCTGCAA-AAAGAGGA--GAG----GCG-------T--CAGTTG---------------GAGGATCTATAAATTGCAGCAGATTTAGTGGACCAGTCAAG----TGGCCCAGGGTG--TGGGCTATTAATAG----------
dp5 2:13750622-13750839 - GTTGGCTCGAACATGAC--GGCGGAGCGGAGCAGCCTCTCGGGGAAGATCTCTGTTTGTGCTGTGC--------------TGTGG----TC----------------------------TGGCTCTT--GC-----------TCTGACTGTGCC-TC-AAGTCAATGCTCCATGGCCTGCAA-GTAGTGGA--AAGG---GAA-------GC-AAGTGAGA---GGCGGAAAACGAGACTTT-----------TAAATTTAGTGG------CGAGTGGCCGGACCAAGACG--TGGGCTAACGCTAACGCCTTTTGT
droPer2 scaffold_0:6696840-6697057 + GTTGGCTCCAACATGAC--GGCGGAGCGGAGCAGCCTCTCGGGGAAGATCTCTGTTTGTGCTGTGC--------------TGTGG----TC----------------------------TGGCTCTT--GC-----------TCTGACTGTGCC-TC-AAGTCAATACTCCATGGCCTGTAA-GTAGTGGA--AAGG---GAA-------AC-AAGTGAGA---GGCGGAAAACGAGACTTT-----------TAAATTTAGTGG------CGAGTGGCCGGACCAAGACG--TGGGCTAACGCTAACGCCTTTTGT
droWil2 scf2_1100000004902:9370717-9370735 + GATGGCTCCAACATTGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13047:10224515-10224603 - GTTGGCTGCAACATGATCCC--------------------------------AGCTC-AACTGGATTTGG-------------------TT----------------------TGGTTT--------TTAGAG-CCAAG--TA-------TGCC-AGAGAGTCAATGCGCCATGCCCTGCAA---------------------------------------------------------------------------------------------------------------------------------------

Generated: 02/13/2013 at 10:59 PM