ID:

dme_304

 Coordinate:

chr2L:2752841-2753182 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend:maturestarmismatch in alignmentmismatch in read

Predicted structure

-65.7 -65.5 -65.5

Flybase annnotation

unknown

Sense Strand Reads

GACGGCAAGCTCAGTCTTGTACGAACCGTCGACGGGAGCACATATCGGTGGTTAGCAAACCAAAGGAAAACGGATATTCCATACATCAGTGGGGCCTACGAGTAAATCCTTTTGCCTGCCGTAGCGCCGCCTGATATATGGCACCTCCTAAAGCCTTACTATATAGATACTATATTATCAGAAAATCACCGCAAAATAATATACCAAAAATCCAACGATCGCTCTGCTCTGGGCTGTTGTTGTTGTCTTATCGACTGCGGCTGTACAAATGCCGCGGCGATTTTTTGAGTGTATTGTATGGGCCAATGGCGTGGGAGAGAGAGAGCGAGTGAGCGTCGTAACGATTTCGGGGAGAGCGAAAAAGAGAGCAGCGAGAGCGTTTAAAGAAAGTTACTCTCTCCTCGAGAGGCAGTGCTTAAATAGACGGCCCGCAGCTGAATCG
**********************************************************************************************************..(((((..((.((...((((((.((((((((.(((..........))).))..((((((...)))))))))))).......((.((..(((((((((((((((..(((((((.((((......)))).))))))).......((((.(((((((.........))))))))))))))))).))))))))).))))....)))))))).)).))))).((((.......))))..***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V085
CME W2 wing disc		 V135
CME W2 (wing disc line)		 V026
1182-4H cell		 V147
1182-4H cell		 V009
CMEL1		 V126
CME L1 		V028
CMEW1 Cl.8+ cell		 V033
CMEW1 Cl.8+ cell		 V091
fGS/OSS total  		 V127
G2		 V019
GM2 cell		 V031
GM2 cell		 V018
Kc167 cell		 V024
kc167 cell		 V073
mbn2 		V148
mbn2 		V075
ML-DmBG1-C1		 V129
ML-DmBG1-c1		 V076
ML-DmBG3-C2		 V130
ML-DmBG3-c2 		V034
ML-DmD16c3 cell		 V131
ML-DmD16-c3 		V021
ML-DmD21 cell		 V010
MLDmD20c5		 V036
ML-DmD20c5 cell		 V027
ML-DmD21 cell		 M005
ML-DmD32 cell		 M006
ML-DmD32 		V022
ML-DmD32 cell		 V035
ML-DmD32 cell		 V132
ML-DmD32 		V030
ML-DmD8 cell		 V134
ML-DmD8 		V029
ML-DmD9 cell		 V125
ML-DmD9		 M029
OSC cells (nuclear)		 M030
OSC cells (cytoplasmic)		 M031
OSC cells (whole cell)		 V144
OSC		 OSS2
OSS_s2		 OSS6
OSS_s6		 OSS7
OSS_s7		 OSS8
OSS_s8		 V032
S1 cell		 V146
S1 cell		 V008
S2-DRSC		 V145
S2-DRSC		 V067
S2-NP		 V020
S2R+ cell		 V025
S2R+ cell		 V074
S3		 V128
S3 		V011
Sg4		 V133
Sg4 		T004
OSC-4N		 T005
89-4N
.........................................................................................................................TAGCGCCGCCTGATATATGGCA........................................................................................................................................................................................................................................................................................................... 22 0 1 207.00 207 0 0 0 4 1 0 0 0 0 0 0 0 0 0 2 9 1 0 3 0 0 3 1 1 0 3 132 13 1 7 4 2 1 0 2 0 0 0 0 0 0 0 0 2 1 1 2 2 2 1 0 3 0 0 0 3
........................ACCGTCGACGGGAGCACA................................................................................................................................................................................................................................................................................................................................................................................................................ 18 0 1 54.00 54 7 0 1 0 0 0 0 3 0 0 0 1 0 1 1 0 1 0 2 1 6 0 1 1 3 1 15 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0
............AGTCTTGTACGAACCGTCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................... 20 0 1 54.00 54 0 0 0 4 0 5 0 0 0 0 0 0 0 1 0 0 0 1 1 1 3 1 0 0 2 1 8 11 0 0 3 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 3 0 1 0 5
.........................................................................................................................TAGCGCCGCCTGATATATGGCT........................................................................................................................................................................................................................................................................................................... 22 1 1 35.00 35 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 21 6 0 1 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0
.........................................................................................................................TAGCGCCGCCTGATATATGGC............................................................................................................................................................................................................................................................................................................ 21 0 1 31.00 31 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 7 0 0 0 0 1 1 1 0 0 0 10 3 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 2 0 0 0 0 0 0 0
........................ACCGTCGACGGGAGCACATA.............................................................................................................................................................................................................................................................................................................................................................................................................. 20 0 1 23.00 23 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 5 0 0 0 0 3 2 1 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0 1 0 0
............AGTCTTGTACGAACCGTCGACG........................................................................................................................................................................................................................................................................................................................................................................................................................ 22 0 1 23.00 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 7 5 0 0 4 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0
............AGTCTTGTACGAACCGTCGAC......................................................................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 23.00 23 1 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 7 3 0 1 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................TAGCGCCGCCTGATATATGG............................................................................................................................................................................................................................................................................................................. 20 0 1 22.00 22 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 9 6 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................AATGGCGTGGGAGAGAGAGAGC.................................................................................................................... 22 0 1 22.00 22 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 3 4 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 4 0 0 0 0
............AGTCTTGTACGAACCGTCGACGGGA..................................................................................................................................................................................................................................................................................................................................................................................................................... 25 0 1 21.00 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 1 0 0 0 1 3 5 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 2 0 0 0 0
............AGTCTTGTACGAACCGTCGACGGG...................................................................................................................................................................................................................................................................................................................................................................................................................... 24 0 1 19.00 19 0 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 1 0 0 0 7 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................AAACCAAAGGAAAACGGA................................................................................................................................................................................................................................................................................................................................................................................ 18 0 1 18.00 18 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 1 0 8 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 1 0
...........................................................................ATTCCATACATCAGTGGGGCCT......................................................................................................................................................................................................................................................................................................................................................... 22 0 1 15.00 15 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................AATGGCGTGGGAGAGAGAGAG..................................................................................................................... 21 0 1 14.00 14 1 0 0 2 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................................................AATGGCGTGGGAGAGAGAGA...................................................................................................................... 20 0 1 10.00 10 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
...............................................................AGGAAAACGGATATTCCA......................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 10.00 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................ATCAGTGGGGCCTACGAG.................................................................................................................................................................................................................................................................................................................................................... 18 0 1 10.00 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 6
..................GTACGAACCGTCGACGGG...................................................................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 10.00 10 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GCACATATCGGTGATTAGCA................................................................................................................................................................................................................................................................................................................................................................................................. 20 1 1 9.00 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................TAGCGCCGCCTGATATATGGCAA.......................................................................................................................................................................................................................................................................................................... 23 1 1 9.00 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 2 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................GAACCGTCGACGGGAGCACA................................................................................................................................................................................................................................................................................................................................................................................................................ 20 0 1 9.00 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0
..............................GACGGGAGCACATATCGG.......................................................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 8.00 8 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................ACCGTCGACGGGAGCACAT............................................................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 7.00 7 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................TTCGGGGAGAGCGAAAAAGAGA........................................................................... 22 0 1 7.00 7 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTCCATACATCAGTGGGGCCT......................................................................................................................................................................................................................................................................................................................................................... 21 0 1 7.00 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0
............AGTCTTGTACGAACCGTCGACGGGAGC................................................................................................................................................................................................................................................................................................................................................................................................................... 27 0 1 7.00 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 2 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................ACATATCGGTGATTAGCA................................................................................................................................................................................................................................................................................................................................................................................................. 18 1 1 7.00 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................GACGGGAGCACATATCGGTGAT...................................................................................................................................................................................................................................................................................................................................................................................................... 22 1 1 7.00 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............AGTCTTGTACGAACCGTCGACGGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................... 26 0 1 6.00 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0
..........................................................................................................................AGCGCCGCCTGATATATGGCA........................................................................................................................................................................................................................................................................................................... 21 0 1 6.00 6 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................ACCAAAGGAAAACGGATA.............................................................................................................................................................................................................................................................................................................................................................................. 18 0 1 6.00 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................TTCGGGGAGAGCGAAAAAGA............................................................................. 20 0 1 6.00 6 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................ATTAGCAAACCAAAGGAAAACGGA................................................................................................................................................................................................................................................................................................................................................................................ 24 1 1 6.00 6 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................TTGATGTTGTCGGATCGACT.......................................................................................................................................................................................... 20 3 6 5.33 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 28 0 0 0 0 0 0 0 0 0 0 0
...................................GAGCACATATCGGTGATTAGCA................................................................................................................................................................................................................................................................................................................................................................................................. 22 1 1 5.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................ACCGTCGACGGGAGCACATAT............................................................................................................................................................................................................................................................................................................................................................................................................. 21 0 1 5.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTAGCAAACCAAAGGAA...................................................................................................................................................................................................................................................................................................................................................................................... 18 1 2 5.00 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GCAAACCAAAGGAAAACGGA................................................................................................................................................................................................................................................................................................................................................................................ 20 0 1 5.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0
..................................GGAGCACATATCGGTGATTAGCA................................................................................................................................................................................................................................................................................................................................................................................................. 23 1 1 5.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0
.................................................GATTAGCAAACCAAAGGAAAACGGA................................................................................................................................................................................................................................................................................................................................................................................ 25 1 1 5.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................ACCGTCGACGGGAGCACATATCGG.......................................................................................................................................................................................................................................................................................................................................................................................................... 24 0 1 5.00 5 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................CGACGGGAGCACATATCGG.......................................................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 4.00 4 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................................................................................AATGGCGTGGGAGAGAGAG....................................................................................................................... 19 0 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................ATTTCGGGGAGAGCGAAAAAGA............................................................................. 22 0 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................ATGGCGTGGGAGAGAGAG....................................................................................................................... 18 0 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................GTGGTTAGCAAACCAAAGGAAAA.................................................................................................................................................................................................................................................................................................................................................................................... 23 0 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4
.................TGTACGAACCGTCGACGGGAGC................................................................................................................................................................................................................................................................................................................................................................................................................... 22 0 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............AGTCTTGTACGAACCGTCGACGG....................................................................................................................................................................................................................................................................................................................................................................................................................... 23 0 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................ACCGTCGACGGGAGCACATATCGGTGA....................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................GCACATATCGGTGATTAGC.................................................................................................................................................................................................................................................................................................................................................................................................. 19 1 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................AGCACATATCGGTGATTAGC.................................................................................................................................................................................................................................................................................................................................................................................................. 20 1 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTAGCAAACCAAAGGAAAACG.................................................................................................................................................................................................................................................................................................................................................................................. 22 1 1 4.00 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............AGTCTTGTACGAACCGTCG........................................................................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTCTGGGCTGTTGTTGTTCCC................................................................................................................................................................................................... 21 3 10 4.00 40 0 0 0 0 0 0 0 0 0 0 19 4 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................ACGAACCGTCGACGGGAGC................................................................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GATTAGCAAACCAAAGGA....................................................................................................................................................................................................................................................................................................................................................................................... 18 1 2 3.50 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GAACCGTCGACGGGAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................. 18 0 1 3.00 3 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................ACCGTCGACGGGTGCACA................................................................................................................................................................................................................................................................................................................................................................................................................ 18 1 1 3.00 3 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GTAGCGCCGCCTGATATATGGCA........................................................................................................................................................................................................................................................................................................... 23 0 1 3.00 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................GACGGGAGCACATATCGGTG........................................................................................................................................................................................................................................................................................................................................................................................................ 20 0 1 3.00 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TCTGGGCTGTTGTTGTTGTCT.................................................................................................................................................................................................. 21 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................ATGGCGTGGGAGAGAGAGAGCG................................................................................................................... 22 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TGCTCTGGGCTGTTGTTGTTG..................................................................................................................................................................................................... 21 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ACCAAAAATCCAACGATCGC............................................................................................................................................................................................................................ 20 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............AGTCTTGTACGAACCGTC............................................................................................................................................................................................................................................................................................................................................................................................................................ 18 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AATCCAACGATCGCTCTG........................................................................................................................................................................................................................ 18 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................ACATATCGGTGGTTAGCA................................................................................................................................................................................................................................................................................................................................................................................................. 18 0 1 3.00 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................AAACCAAAGGAAAACGGATA.............................................................................................................................................................................................................................................................................................................................................................................. 20 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AACCGTCGACGGGAGCACATA.............................................................................................................................................................................................................................................................................................................................................................................................................. 21 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........CAGTCTTGTACGAACCGTCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AAACCAAAGGAAAACGGATATTCCA......................................................................................................................................................................................................................................................................................................................................................................... 25 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TAGCGCCGCCTGATATACGGCA........................................................................................................................................................................................................................................................................................................... 22 1 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................TGTCTTATCGACTGCGGCTGT.................................................................................................................................................................................. 21 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................ACCGTCGACGGGAGCACATATCG........................................................................................................................................................................................................................................................................................................................................................................................................... 23 0 1 3.00 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTAGCAAACCAAAGGAAAACGG................................................................................................................................................................................................................................................................................................................................................................................. 23 1 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CGTCGACGGGAGCACATA.............................................................................................................................................................................................................................................................................................................................................................................................................. 18 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CCAACGATCGCTCTGCTCTGG.................................................................................................................................................................................................................. 21 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................GACGGGAGCACATATCGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 3.00 3 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TAGCACCGCCTGATATATGGCA........................................................................................................................................................................................................................................................................................................... 22 1 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................GGAGCACATATCGGTGAT...................................................................................................................................................................................................................................................................................................................................................................................................... 18 1 2 3.00 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACGATCGCTCTGCTCTGGG................................................................................................................................................................................................................. 20 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................CGAACCGTCGACGGGAGCACA................................................................................................................................................................................................................................................................................................................................................................................................................ 21 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CAACGATCGCTCTGCTCTGGGC................................................................................................................................................................................................................ 22 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACGATCGCTCTGCTCTGGGC................................................................................................................................................................................................................ 21 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GCACATATCGGTGATTAG................................................................................................................................................................................................................................................................................................................................................................................................... 18 1 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................CGGTGATTAGCAAACCAAAGGAAAACG.................................................................................................................................................................................................................................................................................................................................................................................. 27 1 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAAACCAAAGGAAAACGGA................................................................................................................................................................................................................................................................................................................................................................................ 19 0 1 3.00 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................ACCGTCGACGGGAGCACATATCGGTG........................................................................................................................................................................................................................................................................................................................................................................................................ 26 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TAGCGCCGCCCGATATATGGCA........................................................................................................................................................................................................................................................................................................... 22 1 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................ATGGCGTGGGAGAGAGAGAGC.................................................................................................................... 21 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TTTTTGAGTGTCTGGTATGGG............................................................................................................................................ 21 2 20 2.75 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 4 0 0 0 0
...................................................................................................................................................................................................................................TCTGGGCTGTTGTTGTGCCC................................................................................................................................................................................................... 20 3 20 2.70 54 0 0 0 0 0 0 0 0 0 0 36 9 1 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GACGGCAAGCTCAGTCTTGTACGAACCGTCGACGGGAGCACATATCGGTGGTTAGCAAACCAAAGGAAAACGGATATTCCATACATCAGTGGGGCCTACGAGTAAATCCTTTTGCCTGCCGTAGCGCCGCCTGATATATGGCACCTCCTAAAGCCTTACTATATAGATACTATATTATCAGAAAATCACCGCAAAATAATATACCAAAAATCCAACGATCGCTCTGCTCTGGGCTGTTGTTGTTGTCTTATCGACTGCGGCTGTACAAATGCCGCGGCGATTTTTTGAGTGTATTGTATGGGCCAATGGCGTGGGAGAGAGAGAGCGAGTGAGCGTCGTAACGATTTCGGGGAGAGCGAAAAAGAGAGCAGCGAGAGCGTTTAAAGAAAGTTACTCTCTCCTCGAGAGGCAGTGCTTAAATAGACGGCCCGCAGCTGAATCG
**********************************************************************************************************..(((((..((.((...((((((.((((((((.(((..........))).))..((((((...)))))))))))).......((.((..(((((((((((((((..(((((((.((((......)))).))))))).......((((.(((((((.........))))))))))))))))).))))))))).))))....)))))))).)).))))).((((.......))))..***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V085
CME W2 wing disc		 V135
CME W2 (wing disc line)		 V026
1182-4H cell		 V147
1182-4H cell		 V009
CMEL1		 V126
CME L1 		V028
CMEW1 Cl.8+ cell		 V033
CMEW1 Cl.8+ cell		 V091
fGS/OSS total  		 V127
G2		 V019
GM2 cell		 V031
GM2 cell		 V018
Kc167 cell		 V024
kc167 cell		 V073
mbn2 		V148
mbn2 		V075
ML-DmBG1-C1		 V129
ML-DmBG1-c1		 V076
ML-DmBG3-C2		 V130
ML-DmBG3-c2 		V034
ML-DmD16c3 cell		 V131
ML-DmD16-c3 		V021
ML-DmD21 cell		 V010
MLDmD20c5		 V036
ML-DmD20c5 cell		 V027
ML-DmD21 cell		 M005
ML-DmD32 cell		 M006
ML-DmD32 		V022
ML-DmD32 cell		 V035
ML-DmD32 cell		 V132
ML-DmD32 		V030
ML-DmD8 cell		 V134
ML-DmD8 		V029
ML-DmD9 cell		 V125
ML-DmD9		 M029
OSC cells (nuclear)		 M030
OSC cells (cytoplasmic)		 M031
OSC cells (whole cell)		 V144
OSC		 OSS2
OSS_s2		 OSS6
OSS_s6		 OSS7
OSS_s7		 OSS8
OSS_s8		 V032
S1 cell		 V146
S1 cell		 V008
S2-DRSC		 V145
S2-DRSC		 V067
S2-NP		 V020
S2R+ cell		 V025
S2R+ cell		 V074
S3		 V128
S3 		V011
Sg4		 V133
Sg4 		T004
OSC-4N		 T005
89-4N
...........................................................................ATTCCATACATCAGTGGGGCCTA........................................................................................................................................................................................................................................................................................................................................................ 23 0 1 126.00 126 1 0 0 5 0 9 0 0 1 1 0 0 1 0 3 0 0 0 0 1 2 1 0 0 0 1 38 29 0 1 14 0 3 0 3 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 1 5 0 1 0 0
............................................................................TTCCATACATCAGTGGGGCCTA........................................................................................................................................................................................................................................................................................................................................................ 22 0 1 72.00 72 1 0 0 4 0 3 1 0 1 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 16 21 0 1 8 0 0 0 3 0 0 0 1 0 0 0 0 1 1 1 1 0 0 0 0 4 0 0 0 0
.............................................................................TCCATACATCAGTGGGGCCTA........................................................................................................................................................................................................................................................................................................................................................ 21 0 1 66.00 66 0 0 0 3 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 2 0 0 0 24 9 2 2 0 0 1 0 12 0 0 0 1 0 0 0 0 1 3 0 3 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GCAAACTAATATACCAGACAT....................................................................................................................................................................................................................................... 21 3 3 60.33 181 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TCACCGCAAAATATAAAACCA............................................................................................................................................................................................................................................ 21 3 7 10.43 73 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 8 16 10 11 0 0 0 0 0 0 0 0 0 0 0 22 0
.............................................................................TCCATACATCAGTGGGGCCTACG...................................................................................................................................................................................................................................................................................................................................................... 23 0 1 10.00 10 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 2 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATTCCATACATCAGTGGGGCCT......................................................................................................................................................................................................................................................................................................................................................... 22 0 1 8.00 8 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 2 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TTTCCATACATCAGTGGGGCCTA........................................................................................................................................................................................................................................................................................................................................................ 23 1 1 7.00 7 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CCATACATCAGTGGGGCCTA........................................................................................................................................................................................................................................................................................................................................................ 20 0 1 5.00 5 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCCATACATCAGTGGGGCCTAC....................................................................................................................................................................................................................................................................................................................................................... 22 0 1 5.00 5 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................ATATTCCATACATCAGTGGGGCCTA........................................................................................................................................................................................................................................................................................................................................................ 25 0 1 5.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CTCTGCTCTGGGCTGTTGTTGTTGT.................................................................................................................................................................................................... 25 0 1 5.00 5 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AATCCAACGATCGCTCTGCTC..................................................................................................................................................................................................................... 21 0 1 5.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GCCGTAGCGCCGCCTGATATAT............................................................................................................................................................................................................................................................................................................... 22 0 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 2 0 0 0 0
..........................................................................................................................................TGGCACCTCCTAAAGCCT.............................................................................................................................................................................................................................................................................................. 18 0 1 4.00 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CTGCTCTGGGCTGTTGTTGTTGT.................................................................................................................................................................................................... 23 0 1 4.00 4 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AATCACCGCAAAATATAAAAC.............................................................................................................................................................................................................................................. 21 3 19 3.79 72 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 5 10 5 5 3 2 0 0 0 0 0 0 0 0 0 0 0 37 0
........................................................................................................................................................................................ATCACCGCAAAATATAAAACCA............................................................................................................................................................................................................................................ 22 3 2 3.50 7 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCTGCCGTAGCGCCGCCTG..................................................................................................................................................................................................................................................................................................................... 19 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................AAAATCCAACGATCGCTCTGC....................................................................................................................................................................................................................... 21 0 1 3.00 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATTCCATACATCAGTGGGGGCTA........................................................................................................................................................................................................................................................................................................................................................ 23 1 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TCGCTCTGCTCTGGGCTGT............................................................................................................................................................................................................. 19 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................ATCGCTCTGCTCTGGGCT............................................................................................................................................................................................................... 18 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CTCTGCTCTGGGCTGTTGTTGTT...................................................................................................................................................................................................... 23 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................ATCCAACGATCGCTCTGCTCT.................................................................................................................................................................................................................... 21 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................................GCTCTGGGCTGTTGTTGT....................................................................................................................................................................................................... 18 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CCATACATCAGTGGGGCCTACG...................................................................................................................................................................................................................................................................................................................................................... 22 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTCCATACATCAGTGGGGCCT......................................................................................................................................................................................................................................................................................................................................................... 21 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................AACGGATATTCCATACATCAG................................................................................................................................................................................................................................................................................................................................................................. 21 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................................................AAAAAAGTTACTCTCTCC......................................... 18 1 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................GCTCTGGGCTGTTGTTGTTGT.................................................................................................................................................................................................... 21 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................ATCACCGCAAAATATAAAACC............................................................................................................................................................................................................................................. 21 3 6 2.17 13 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 6 0

Re-alignment of all predicted orthologs

Species Coordinate miRBase ID Alignment
dm3 chr2L:2752791-2753232 + GACGGCAAGCTCAGTCTTGTACGAACCGTCGACGGGAGCACATATCGGTGGTTAGCAA----AC-C---A------------AAGGAAAA-------------------C---------------------------------------------------GGATATTCCATACATCAG-TG-GG-GCCTACGA------------G---------------------------TAAATCCTTTT----------GCCTGCCGTAGCG----CCGCCTGATATAT----GG---C-ACCTCCTAAAGCCTTAC----------------------------------------------TAT-------ATAGATAC--TAT-----A---------------------------TT---AT----CAGAAAATCACCGCAAAATA------ATAT--ACC-AA----AAATCCAACGATCGCTCTG-------------------------------------------------------------CTCT----------------GGGCTGTTGTTGTTGTCTT----------------------ATCGACTGCGGCTGTACA--AATGCCGCGGCGATTTTT---T-GAGTGTATTGTATG------------------------GGC------CAATGGCGTGGGAGAGAG----AG--------------------------------------------------------------------------------------------------------------------------AGCGAGTGAGCGTCGTAACGATTTCGG------------------------------------GGAGAGCGAAAAAG----AGAGCAGC----GAGAGCGT--TTAAAGAAA--GTTACT---------------------------------------------------------------------------CTCTCC-TCGAGAGGCAGTGCTTAAATAGACGGCCCGCAGCTGAATCG
droSim3 2L:2715043-2715483 + GACGGCAAGCTCAGTCTTGTACGAACCGTCGACGGGAGCACATATCGGTGGTTAGCAA----AC-C---A------------AAGGCAAA-------------------C---------------------------------------------------GGATATTCCATACATCAG-TG-AG-GCCTACGA------------G---------------------------TAAATCCTTTA----------GCCTGCCGTAGCG----CCGCCTGATATAT----GG---C-ACCTCCTAAAGCTATAT----------------------------------------------TAT-------ATAGATAC--TAA-----A---------------------------TT---AT----CAGAAAATCACCGCAAAATA------ATAT--TCCAAA----AAATCCAACGCTCGCTCTG-------------------------------------------------------------CTCT----------------GGGCTGTTGTTGTTGTCTT----------------------ATCGACTGCGGCTGTACA--AATGCCGCGGCGATTTTT---T-GAGTGTATTGTATG------------------------GGC------CAATGGCGTGGGAGAGAGAG--------------------------------------------------------------------------------------------------------------------------------CGAGAGAGCGTCGTAACGATTTCGG------------------------------------GGAGAGCGAAAAAG----AGAGCAGC----GAGAGCGC--CAAAAGAAA--GTTACT---------------------------------------------------------------------------CTCTCC-GCGAGCGGCAGTGCTTAAATAGACGGCCCGCAGCTGAATCG
droSec2 scaffold_5:918917-919357 + GACGGCAAGCTCAGTCTTGTACGAACCGTCGACGGGAGCACATATCGGTGGTTAGCAA----AC-C---A------------AGGGCAAA-------------------C---------------------------------------------------GGATATTCCATACATCAG-TA-AG-GCCTACGA------------G---------------------------TAAATCCTTTA----------GCCTGCCGTAGCG----CCGCCTGATATAT----GG---C-ACCTCCTAAAGCTATTT----------------------------------------------TAT-------ATAGATAC--TAT-----A---------------------------TT---AT----CAGAAAATCACCGCAAAATA------ATAT--TACAAA----AAATCCAACGCTCGCTCTG-------------------------------------------------------------CTCT----------------GGGCTGTTGTTGTTGTCTT----------------------ATCGACTGCGGCTGTACA--AATGCCGCGGCGATTTTT---T-GAGTGTATTGTATG------------------------GGC------CAATGGCGTGGGACAGAGAG--------------------------------------------------------------------------------------------------------------------------------CGAGAGAGCGTCGTAACGATTTCGG------------------------------------GGAGAGCGAAAAAG----AGAGCAGC----GAGAGCGC--CAAAAGAAA--GTTACT---------------------------------------------------------------------------CTCTCC-GCGAGCGGCAGTGCTTAAATAGACGGCCCGCAGCTGAATCG
droYak3 2L:2748299-2748766 + GACGGCAAGCTCAGTCTTGTACGAACCGTCGACGGGAGCACATATCGGTGGTTAGCAA----AC-C---A------------AAGGCGAA-------------------C---------------------------------------------------GGATATTCCATACATCAG-TG-GG-GCCTACGA------------G---------------------------TAAATCCTTTT------GCCTGCCTGCCGTAGCG----CCGCCTGATATAT----GG---C-ACCTCCTATAGCTACA------------------------------------------TATACTAT-------ATAGATAC--CATTCTGCA---------------------------TT---AT----CAGAAAATCACCGCAAAATA------ATAT--TCCTAA----AAATCCAACGCTCACTCG----------------------------------------------------------------------------------GGGCTGTTGTTGTTGTCTTCTC---TCT--GCGCTGCCGCCATCGACTGCGGCTGTACA--AATGCCGCGGCGCTTTTT---T-GAGTGTATTGTATA------------------------GGC------CAATGGCGTGGGAGAAAG----AG--------------------------------------------------------------------------------------------------------------------------AGCGAGAGAGCGTCGTAACGATTTCGC------------------------------------GGAGAGCGAGAGAG----AATGCAGA----GAGAGCAC--CGATTGAAA--GTTACT---------------------------------------------------------------------------CTCGCC-GCGAGAGGCAGTGCTTAAATAGACGGCCCGCAGCTGAATCG
droEre2 scaffold_4929:2805536-2806005 + GACGGCAAGCTCAGTCTTGTACGAACCGTCGACGGGAGCACATATCGGTGGTTAGCAA----AC-C---A------------AAGGCAAA-------------------C---------------------------------------------------GGATATTCCATACATCAG-TG-AG-GCCTACGA------------G---------------------------TAAATCCTTTT----------GCCTGCCGTAGCG----CCGCCTGATATAT----GG---C-AGCTCCTATAGCTACA------------------------------------------TATACTAT-------ATAGATAC--CAT-----A---------------------------TT---AT----CAGAAAATCACCGCAAAATA------ATAT--TCCTAA----AAATCCAACGCTCCCTCT----------------------------------------------------------------------------------GGGCTGTTGTTGTTGTCTTCTC---TCT--GCGCTGCCGCCATCGACTGCGGCTGTACA--AATGCCGCGTCGCTTTTT---T-GAGTGTATTGTATG------------------------GGC------CAATGGCGTGGGAAAGAG----AG------------------------------------------------------------------------------------------------------------------------AAAGCGAGAGAGTGTCGTAACAAATTTGCAGAGAGCGAGAGAGAGAGA--------------GAGAGT------------------GCAGA---AGAGAGCAC--CAAAAGAAG--GTTACT---------------------------------------------------------------------------CTCGCC-GCGAGAGGCAGTGCTTAAATAGACGGCCCGCAGCTGAATCG
droEug1 scf7180000409554:3358419-3358882 - GACGGCAAGTTCAGTCGTGTACGAACAGTCGACGGGTCAACATATCGGTGGTTAGGAA----AA-C---T---------G--AAG----------------------------------------------------------------------------GGATACTCCGTACATCAG-TG-GG-GCCTACGACC-AA-----A-C---------------------------CAAATCCTTT-----------GCATTTCGTAGCG----CCGCCTGATCTAT----GG---C-AACTCCTATAGCTATAC----------------------------------------------TATATACCAAATAGATAC--CAT-----A---------------------------TA---ATCGAAACAAAAATCACCGCAAAATA------ATAT--TTC-GA----AAATCCATCGCTCGCTCT----------------------------------------------------------------------------------GGGATGTTGTTGTTGTCTTCTC---TCT--GCGCTGCCGCCATCGACTGCGGCTGTACA--AATGCCGCGGCGGTTTTT---T-GAGTGTATTGCATA------------------------GGC------AAATAGCGTGGGAGAGAGAG--TTAA----CG----------------------------------------------------------AGCGTCCGAGCG--AG---------------------------AGACTAATAAG---------------------------------------------AGA--------------GGGGGAGAGCGTGAGAG----AGAG---------AG--GGGGCA-----AAT--GTTACT---------------------------------------------------------------------------CTCTTC-GGGAGAGCGAGTGCTTAAATAGACGGCCCGCAGTTGAATCG
droBia1 scf7180000302188:1755217-1755688 + GACGGCAAGTTTAGTCTTGTACGAACCGTCGACGGGTGAACATATCGGTGGTTAGCCA----AC-C---A------------GAGGGA------------------------------------------------------------------------------TGCGACGCATCAG-TG-GG-GCCTACGAGGGGATTTTGAAAGA-------------------------AGCATCCTTTT----------GCCTGTCGTAGCG----CCGCCTGATGTGT----GG---CCAACTCCT--------GC----------------------------------------------TAT-------ATAGATAC--CAT-----A---------------------TATATAT-ACAATCGA-CAGAAAATCACCGCAAAATA------ATAT--TTC-GA----AAATCCATCGCTCGCTCTGC--------------------------------------------------------------------------------GGGATGTTGTTGTTGTCTTCTC---TCT--GCGCTGCCGCCATCGACTGCGGCTGTACA--AATGCCGCGGCGGTTTTT---T-GAGTGTATTGCCATG-GC-----------------TTGGGC------CAATGGCGTGGGAGAGAG----ATAGCCCA-----------------------------------------G--------------------C-TCCGAGAG-------------------------------AG-----AGAG---------------------------------------------AGAGGGAACGTGC---TGAGGGAGAGCCGGCGAGAGGGAGAG---------------CCC-------GA--GTTACT---------------------------------------------------------------------------CTCGCC-GGGAGAGCGAGTGCTTAAATAGACGGCCCGCTGCCGGACCG
droTak1 scf7180000415705:500782-501217 + GACGACAAGCTCAGTCTTGAACGAACCGTCGACGGGTACACATATCGGTGGTAGGAAGACCGAACCAA-A------------GAG------------------------------------------------------------------------------GGATCCCGTATATCAG-TG-GG-GCCTAGAA------------A---------------------------CAAGTCCTTTA----------GCCCTTCGTAGCG----CCAACTGATGTAT----GGGGGC-CACTACTATAAC---------------------------------------------------CCT-------ATAGATATACCAT-----A---------------------TA----TA---ATCGA-CAGAAAATCACCGCAAAATA------ATAT--TTC-GA----AAATCCATCGCTCGCTCT----------------------------------------------------------------------------------GGGATGTTGTTGTTGTCTTCTC---TCT--GCGCTGCCGCCATCGACTGCGGCTGTACA--AATGCCGCGGCGGTTTTT---T-GAGTGTATTAGGCG---------------------------CACGGCCAATGGCGTGGGAGAGAG----ATAA----C-------------------------------------------------------AGAGAGCGTCCGCG-----------------------------------------------------------------------------------------AGA--------------GAGGGAGAGCGT---------------------------------ATCT-GCGAGATACT---------------------------------------------------------------------------CTCGCCGGAGAGAGCAAGTGCTTAAATAGACGGCCCGCAGCTGAATCG
droEle1 scf7180000491273:425329-425793 - GATGGCAAGCTCAGTCTTGTACGAACCGTCGACGGGTATACATATCGGTGGTTAGGAA----CC-T---A-GGAGCTCTT-------AAG-------------------C---------------------------------------------------GAACAGT--ATCTATCGGATGGCG-GCCTACCG----G-----A-A---------------------------CATATCCTTCC----------GACTTTCGTAGCG----CCGCCTGATATAT----AG---A-TACTC-------TATAC----------------------------------------------CTT-------ACAGATAC--CAT-----A---------------------------GA---AT--------AGATCACCGCAAAATATATAAAATAT--TTC-GA----AAATCCATCGCTCGCTCTGGG-------------------------------------------------------------------------------GTGCTGTTGTTGTTGTCTTCTC---TCT--GCGCTGCCGCCATCGACTGCGGCTGTACAAAAATGCCGCATCGGATTT----T-CAGTGTATTGTACAGGG----------------------GCT-ATG-CTTTGGCGTGGGAGCGAACGCGATAA----CG------------------------------------------GT-----------------GTCCCAG-------------------------------AGAG-----AGGGAGA---------------------------------------GCGAGA--------------GCGGGAGAGCGAGAGAG----AGAG---------AC--TGGCCG-----CCT--CTGGCG---------------------------------------------------------------------------CTCTCC-CAGAGAGCTAGTGCTTAAATAGACGGGCCGCAGCCGAAGCG
droRho1 scf7180000766156:71913-72325 - GACGGCAAGCTCAGTCTTGTACGAACCGTCGACGGGTAAACATATCGGTGGTTAGGAA----AC-C---TAGGAACCTTT------CAAA------------------------------------------------------------------------GACACT--ACATATCAG-AG-GGAGCCTACG-----G-----A-A---------------------------AATATCCTTCC----------GACTTTCGTAGCG----CCGCCTGATATAT----AG---A-TA---C------TATTC----------------------------------------------TTT-------ATAGATAC--CAT-----A------------------------------------------------------GATA------ATAT--TTC-GA----AAATCCATCGCTCGCTCT----------------------------------------------------------------------------------GGGATGTTGTTGTTGTCTTCTC---TCT--GCGCTGCCGCCATCGACTGCGGCTGTACAAAAATGCCGCTTCGGTTTT----T-CAGTGTATTGTACAGGG----------------------GTT-ATG-CTATAGCGTGGGAGAGAGCGCGATAA----CG------------------------------------------GT-----------------GTCCCCG-------------------------------A-----------G---------------------------------------------AGA--------------GCGGGAGAGCA---AAG----AGAG-------------TAGCC-----------G--TCT---------------------------------------------------------------------------CTCTTC-GGGAGAGCGAGTGCTTAAATAGACGGGCCGCAGCCGAAGCG
droFic1 scf7180000453924:681198-681641 + GACAGCAAGCTCAGTCTTGTACGAACCGTCGACGGCAACACATATCGGTGGTTAGGAA----CC-T---T---------CCAGAG------------------------------------------------------------------------------AGACCCCACATATCGG-TG-GG-GCCTGCTAGCCGG-----A-A---------------------------TATATCCTTCC----------GG-TCTCGTAGCG----CTGCCCGATATTT----GGGG-G-ACCTC--A-----ATAC----------------------------------------------CTT-------ATAGATAC--CAT-----A---------------------------TA---ATCGAGACAGAAATCACCGCAAAATA------GTATTTTTC-GA----AAATCTA-CGCCTGCCCTGT--------------------------------------------------------------------------------GGGATGTTGTTGTTGTCTTCTC---TCT--GCGCTTCTCTCATCGACTGCGGCTGTACA--AATGCCGCGGAGGTTTTT---T-GAGTGTATTGCACAGAG----------------------G-------CCGTGGCGTGGGAGAGAGCGAGATAA----CG------------------------------------------G-C-------ACAGAG-------------------------------------------AGCTCAAAAAG---------------------------------------------AGA--------------GGGGGAGAGCGAGAG------AGAG----------------CC-------GG--GCTCCG---------------------------------------------------------------------------CTCCGC-GCGAGAGCGAGTGCTTAAATAGACGGCCCGCAGCCGAGGCT
droKik1 scf7180000302271:215135-215607 + GACGGCAAGCTCAGTCTTGTACGAGCCGTCGACGCGGACACATATCGGTGGTTAGGAACTAGAAAAAATA-------------AG-AAAA--------CCCA---------GCTAGCACCGGG-G------------------------------------GG---------ATATCAG-AG-GGACACTATGA------------A---------------------------AATGTCCTTGC----------GGATCTCGTAGCT----CCAGCTGATAC-------------ACCTCCTATAGCTATAC----------------------------------------------TAT-------A------C--TCT-----T---------------------------TA---ATCGAACAAGAAATCACTGCAAAAT---------AT--TTC-CA----AAATCTTTCGCTGGCCAGAGGGCGCTGC-----------------------------------------------------------------TGC-TG-CTGATGTTGTTGTTGTCTTCTC---TCT--GCGCTGCCGCCACCGACTGCGGCTGTACA--AACGCCGCGGCGGTTTT----T-CAGTGTATTGCATTGGT----------------------G---CGG-TTCTGGCGTGGGAGAGAGAGCGGCAG----CA----------------------------------------GCGCG-------CTC----------GCGAG-------------------------------CG-----AAAG---------------------------------------------AGAGGGCCAGAGA----GA--GGG-------------------AGC----GAGAGAGC--GCATAGCGA--GCCGCG---------------------------------------------------------------------------CTC--G-GCGAGCGAGAGTGCTTAAATAGACGGGCCGCAGCTGAGCCG
droAna3 scaffold_12984:222515-222982 + GTTGGCAAGTTTAGTCTTGTACGAGGCGTCGACGGGTAAACATATCGGTGGTCAGCATCAGAAC-T---A------------A---AATAGCAATATTT---------------------G------------------------------------------------------------G-GG-GTCTATTAGCAGGCT-----------ATGCTCCT-----TAT------TCAATCCTTTTAATGTG----CAATATCGCGAGCCGG-CCAGCTGATA--------G---A-CCCTCC------TATAC----------------------------------------------TAT-------ATAA--AC--TGA--------------------------------------ATCGAACAAAAAATCACTGCAAATTG------------TTA-GA----AAATCTTTCGCTGGCTCTGGGGCGCT---------------------------------------------------------------CCAATAC-TG-GTGCTGTTGTTGTTGTCCTCTC---TCTCGGCGCTGCCGCCATCGACTGCGGCTGTACA--AATGCCGCGGCGGTTTT----T-CAGTGTATTGCATTGAGA-----------------G-----CGTGGACACT-GCGTGGGAGAGAG----ATAAGCGA-----------------------------------------CTCGCG-------TCAGAG-------------------------------------------AG-----CGAACGA---------------------------------------AAGAGA--------------GAGGGTGAGCGACAGGG----AGAA--------------------AAAGAAA--G-----------------------------------------------------------------------------------GCG-GCGAAAGCGCGGGCTTAAATACACAGGACGCAGCTGAGGCG
droBip1 scf7180000396574:357169-357635 + GTTGGCAAGTTCAGTCTTGTACGAGGCGTCGACGGGTAAACATATCGGTGGTCAGGACAAAAAC-T---A------------A---AATACCAATATTT---------------------G------------------------------------------------------------G-GG-GTCTATAAGCGGGCC-----------CTGCTCTT-----CAT------ACAATCCTTTTAATTTT----GAATATCGCGGGCCAG-CCTGCTGATA--------G---A-CCTTCC------TATAC----------------------------------------------TAT-------ATAA--AC--TGA--------------------------------------ATCGAACAAAAAATCACTGCAAAATG------T------TA-GA----AAATCTTTCGCTGGCTCTGGGGCGCT---------------------------------------------------------------CCAATAC-TG-GTGCTGTTGTTGTTGTCCTCTC---TCTCGGCGCTGCCGCCATCGACTGCGGCTGTACA--AATCCCGCGGAGGTTTT----T-CAGTGTATTGCATTGAGA-----------------G-----CGTGGCCGCT-GCGTGGGAGAGAG----ATAAGCGA-----------------------------------------CCCGCG-------TCAGAG-------------------------------------------AG-----CGAGCGA---------------------------------------AAGAGA--------------GAGGGTGAACGA-----------------------CAGGGA--GAAAAGAAA--GA-----------------------------------------------------------------------------------CG-ACGAAAGCGCGGGCTTAAATACACAGGACGCAGCTGAGAAG
dp5 4_group4:2090558-2091062 + A---GCATGTTCATTCTTGTTCGAGCCTTCAACGGGT--ACATATC-GTGGTCAGCAA----AA-C---A------------GAA-AATA--------CCCAG------CAGTTAGCA-----------------------------------------------------------------------------------------GTAGTA---TCCTTCTTCCATGCAAGATAAATACTAT----------------------------------------------------------------------CTGTTTTTCACAGTG-CCTCTGACTGAT-TCCTCCTGCAC-----TGC---------AAATAC--TCT-----A---------------------TA----TAATACTTGA-TCCAAAATTATTGCAAAAT---------AT--TTC-AA----AAATCTCTCGATTGCTTGG--ACG---------------------C----------------------------------------------AA------ACTCTGTTGTTGTTGCCTTCTC---TCT--ACTTTGCTGC---CGACTGCGGCTGTACA--GATGCCGCAGAGGTTTTT-CTT-CAGTGTATTCCG-------------------------------------------AGGGAGAGAG----GCAA----C-------------------------------AC------------C------------AACCGACCG--TGTGATAAGC--------------CGGCCAGAAAG-----AAAGCAA---------------------------------------GCGAGA--------------GAGGACTAGAGAAAACG----AGAG---C----GAGAGTGC--CTAA--------------------GTGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTGCGAT----TTGTATCTGTGTCGTGTCAACGCTTCTCTT--C---------CGCTGCTTAAATACACTGGACGTACCACAAATC
droPer2 scaffold_10:1097781-1098281 + A---GCATGTTCATTCTTGTTCGAGCCTTCAACGGGT--ACATATC-GTGGTCAGCAA----AA-C---A------------GAA-AATA--------CCCAG------CAGTTAGCA-----------------------------------------------------------------------------------------GTAGTA---TCCTTCTTCCATGCAAGATAAATACTAT----------------------------------------------------------------------CTGTTTTTCACAGTGGCCTCTGACTGATTTCCTCCTGCAC-----TGC---------AAATAC--TCT-----A---------------------TA----TAATACTTGA-TCCAAAATTATTGCAAAAT---------AT--TTC-AA----AAATCTCTCGATTGCTTGG--ACG---------------------C----------------------------------------------AA------ACTCTGTTGTTGTTGCCTTCTC---TCT--ACTTTGCTGC---CGACTGCGGCTGTACA--GATGCCGCAGAGGTTTTT-CTT-CAGTGTATTCCG-------------------------------------------AGGGAGAGAG----GCAA----C-------------------------------AC------------C------------AACCGACCG--TGTGATAAGC--------------CGGCCAGAAAG-----AAAGCAA---------------------------------------GCGAGA--------------GAGGACTAGAGAAAACG----AGAG---C----GAGAGTGC--CTAA--------------------GTGTGTGTGTGTG------TGCGTGTGCGTGTGCGAT----TTGTATCTGTGTCGTGTCAACGCTTCTCTT--C---------CGCTGCTTAAATACACTGGACGTACCACAAATC
droWil2 scf2_1100000004585:1528095-1528525 + GACAGCACGTTTAGTCTTGTACGAGCCGTCAGCGGATACACATATCGGTGGTCAGAAGAAAGAAAA----------------A---AAAAATAATCTAA-GA-AAATAA--ATTAGCA-------AG---------------------------------------------------G-CG-GG-AAATATTAG---G-----A-T---------------------------AATATACTCGT--------A-TTATCCTGTACCG----CTGCT-AATTTATTTTCCGGA-T-A-----TATAAATATTTTCT------------------------------------------------------------------ATTATTTCATATACACATGTATACAAATA----TA-GACAAAA-ACAAAAATTTTTGCAAAATT------A--T--TAT-AGGAATAACTCTCTCGATCTCTATTGAATTTTGCGAGCTATTGA---G---C-----------------------------------------------A------ACAATGTTGTTGTTGTCTTCTC---TCT--ACTTTGCTGT---CAACTACTGCTAAACA--AATGCCGCAGAGGTTTTT-GTTCCAGTGTATG--------A-----------------G-----CATAAACTAT-ACGTGCGAAAGAG----AG------------------------------------------------------------------------------------------------------AT-------------AAG---------------------------------------------AGA--------GAGAGAGAGGGAGAGAGAAATAG----AGAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12963:11373871-11374515 + GATGGTAAGTTTAGTCTTGTACGAGCCGTCAACGGGTACACATATCGGTGGTCAGTCAGAA-AG-C---AAG-----------AA-AATA-CAAAATACTGA-AAAATA--ATCA------GCCAAGGCATACAAATATACCGAA-----------------------------------TA-GC-GTATGCAC------------A---------------------------TACACAATTTT------GTATAT---TTGTTGCC-GCGC---------------------T-AAAAACTAAGGCTATAT----------------------------------------------TAT---------AAATAT--TTTATTATT---------------------------TT---AT----CAAAAAATTATTGCAAAATT------A--T--TTG-TA----GAGTCGG-------TCAGCGGGCGTAGT-------TGGTGGGTCGGCCGGACGGGAGCTGGGGCGGCGTTTGTTATTTTGTTCTCGCCTCCGTTACCTGCTTAATGTTGTTGTTGCCTTCTCTTCTCT--ACTTTGC------CAACTGCTGCTGTACA--AATGCCGCCGTGCTTTTTTGTT-CAGTGTATTGAATACAT----------------------G---------ACAGAACGAGAGAGCAAG--TAAA----AAAGAGAGAGAGAGAGAGAAAGAGAAGGGGACAGTGACAGTAGCGCGCGGCTTGAGC----GTGAGCG--AGTGATAAGCGAGCGAACAGCGGCCGGTCCGAACG-----AAAG---------------------------------------------AGA--------------GACAGAGAGAAAAAACG----AGAG---CAAG-CAA-------------------CCGCAGTCGGAAGCGTGTGCGTGTGTGCA----TGTGTGTATGTGTGCTTGTGTTGTATC---------------------------------------TGTTAAATACACACGACGTAGCAGCATTT
droMoj3 scaffold_6500:20123325-20123949 + GATGGTAGGTTTAGTCTTGTACGAGCCGTCGACGGGTACACATATCGGTGGTCAGTTAGAA-AA-C---A------------AAA-AATA-CAAAATACCGA-AATATA--ATCA------GACAAGACATACAGATATACCAAATAGCGTACGCATATACGAATATTTTGTATAT------------------------------------------------------------------------------------TTGTACCC-GCGT---------------------T-AA-AGCTGAGACTATAT----------------------------------------------TAT---------AAATAT--TTTATTATT---------------------------TT---AT----CTAAAAATTATTGCAAAATT------A--T--TTG-TA----GAGTCGG-------TCAGCGAACGTTAT-------TGGTGGGTCGCACAGACGGGGGCTGGGGCGGCGTTTGTTATTTTGTTCTCGCCTCCGCTACCTGCCTAATGTTGTTGTTGTCTTCTCTTCTCT--ACTTTGC------TAACTGCTGCTGTACA--AATGCCGCCGTGCTTTTTTGTT-CAGTGTACTGCATACACGACAGAACGAGAGAACACA--TGT------TGAGAGTGTGAGAGAAAG----AG------------------------------AGGGGAACAGTGACAG-------CGGCTTGAGC----GTGAGCG--AGTGATAAGCGAGCGAACAGCGGCCGGTCTGTACG-----AC-----------------------------------------------AGA--------GAGGGAGAGTGAGAGAAAAAACG----AGAGCAGG----CAGCGCGT----TC----------------GTCGGCGTATGC-------CT----TGTGTGCATATGCGCTC---TTGTATC---------------------------------------TTTTAAATACACAGGACGTAGCAGCATTT

Generated: 02/13/2013 at 10:24 PM