ID:

dme_255

 Coordinate:

chr2R:5145399-5145461 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend:maturestarmismatch in alignmentmismatch in read

Predicted structure

-49.2 -48.1 -48.1

Flybase annnotation

unknown

Sense Strand Reads

ACCACGCTGCGTCGCCTGCTGAAGGAGCAGAAGATGGCGCTGGATGCCGGCGCGCTGGAGAATCTGCTGCTGCAGCAGCAACAGACTGAGCAGCAGGCACTGCAGCAGCGCCAGCGCCAGGAGCAGCTGCGTCTGCAGCAGTTTCAGGAGGCGCAGCGCCAGG
***********************************.((.((((.(((.(((((((((.((..(((((((((.(((..........))))))))))))..)).)))).))))).)))))))..))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V085
CME W2 wing disc		 V135
CME W2 (wing disc line)		 V026
1182-4H cell		 V147
1182-4H cell		 V009
CMEL1		 V126
CME L1 		V028
CMEW1 Cl.8+ cell		 V033
CMEW1 Cl.8+ cell		 V091
fGS/OSS total  		 V127
G2		 V019
GM2 cell		 V031
GM2 cell		 V018
Kc167 cell		 V024
kc167 cell		 V073
mbn2 		V148
mbn2 		V075
ML-DmBG1-C1		 V129
ML-DmBG1-c1		 V076
ML-DmBG3-C2		 V130
ML-DmBG3-c2 		V034
ML-DmD16c3 cell		 V131
ML-DmD16-c3 		V021
ML-DmD21 cell		 V010
MLDmD20c5		 V036
ML-DmD20c5 cell		 V027
ML-DmD21 cell		 M005
ML-DmD32 cell		 M006
ML-DmD32 		V022
ML-DmD32 cell		 V035
ML-DmD32 cell		 V132
ML-DmD32 		V030
ML-DmD8 cell		 V134
ML-DmD8 		V029
ML-DmD9 cell		 V125
ML-DmD9		 M029
OSC cells (nuclear)		 M030
OSC cells (cytoplasmic)		 M031
OSC cells (whole cell)		 V144
OSC		 OSS2
OSS_s2		 OSS6
OSS_s6		 OSS7
OSS_s7		 OSS8
OSS_s8		 V032
S1 cell		 V146
S1 cell		 V008
S2-DRSC		 V145
S2-DRSC		 V067
S2-NP		 V020
S2R+ cell		 V025
S2R+ cell		 V074
S3		 V128
S3 		V011
Sg4		 V133
Sg4 		T004
OSC-4N		 T005
89-4N
..........................................................................................CAGCAGGCACTGCAGCAGCGCC................................................... 22 0 1 17.00 17 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 2 0 3 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 3 0 1 0 0
..........................................................................................................................................CAGTTTCAGGAGGAGCAG....... 18 1 2 7.50 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................CAGCAGGCACTGCAGCAGCGCCA.................................................. 23 0 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CGCGCTGGAGAATCTGCTGCT............................................................................................ 21 0 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
..........................................................................................CAGCAGGCACTGCAGCAGCG..................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CGCGCTGGAGAATCCGCTGCT............................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................AGATGGCGCTGGTTGCCGGAGC.............................................................................................................. 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ACTGCGTCGCCTGCTGAAGGAG........................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CAGCAGGCACTGCAGCAGCGCT................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................AACAGCGACAGACTGAGCAGC..................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GTTCCAGGAGGCGCAGCGCCA.. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................ACAGCAACAGACTGAGCAGCAG................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ACCACACTGCGTCGCCTGCTG.............................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................AGCAGGCACTGCAGCAGCGCCA.................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................GAGAAGACGATGGGGCTGGAT...................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GCGCTGGAGAATCTGCTGCTGCAGT....................................................................................... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CAGCAGGCACTGCAGCAGCGT.................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................GCGCTGGAGAATCTGCTGCT............................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................TGCTGAAGGAGCGGAGGGTGGC............................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GCAGTTACAGGAGGCGTAGGG..... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CCTGGATGGCGGCGCGCTGGT........................................................................................................ 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................GAGAGTCTGCTGCTGCAACAG..................................................................................... 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................AGCATCAGACTGGGTAGCAGG.................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGGTGCTGGATGACGGCGCTC............................................................................................................ 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AAGGAGCACAAGATTGCACTG......................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................TAAAGGAGCAGCAGATAGCGC........................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GCAGTTTCAGGAGCCGCAC....... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................GCAGCAACAACACACTGAGCA....................................................................... 21 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TGGAGGACGGCGCGGTGGAGA...................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CGTCAAGAGCAGCTGCGTTTG............................ 21 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AAGCCGTTTCAGGAGGCGAAG....... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................CGCAGCAACCGACTGAGCAGA..................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGCAGCAGCAAAAGAATGAGC........................................................................ 21 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGCAGGTTCAGGAGACGCAGC...... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GTTTCAGGAGCCGCACCGCG... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................CTGGAGAATCTGACGCTGC.......................................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................ACGGAGCAGGAGTCACTGCAG.......................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................CGGCGCGCTGGAGGGTCTGAT............................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GATGGAGCAGAAGAGAGCGCT.......................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TCGCTGGATGCGGGAGCGCTG.......................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GCAGGTTCAGGAGGCGTACC...... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GAACTTGGCGCTGGTTGCCGG................................................................................................................. 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGGAGCAGGATGCCGGCGCCC............................................................................................................ 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TGGAAGCGGGCGCGCCGGAG....................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GCCGTTTCAGGAGCCGCAC....... 19 3 20 0.15 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GCAGTTTCAGGAGCCGTA........ 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GCAGTTTAAGGAGGCGAAG....... 19 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AAGAGCAGAAAATTGCGCTGG........................................................................................................................ 21 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GCCGTTTCAGGAGGCGCACG...... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGGCGCTGGTTGCGGGAGCG............................................................................................................. 20 3 19 0.11 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................AATGCCGGCGCGTGGGAGAA..................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................ATCTGCGGCTGAAGCAGCA................................................................................... 19 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GCCGTTTCAGGAGCCGCACC...... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CGCCAGGTGCAGCTGCTTCTT............................ 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........CGGCGCCTGTTGAAGGACC....................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............CTGCAGAAGCAGCAGAAGATG............................................................................................................................... 21 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................CAGGCCTTGCAGCAGCGCCGG................................................. 21 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................AGGAGCAACAGAATGAGCACC..................................................................... 21 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................CGGCGCAAGGAGCAGCTGC................................. 19 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CGCGAGGAGCAGCTGGGTCC............................. 20 3 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................ACCGGAAGATGGTGCTGGAT...................................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TACTGCTGCCGCAGAAACAG............................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GAAGGAGCACAAGAAGGCGAT.......................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TGAGCAGCAGGCAACGAAGC......................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TTAGGAGGAGAAGATGGCGCT.......................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ACCCCTCTGCGTCCCCTGC................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................AGCCCTAGGAGCAGTTGCG................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................AACAGGCACGGCAGCAGGGCC................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................TGGTGAGGGGGCAGAAGAT................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCAGCAGCAACCGACGGAGCA....................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACCACGCTGCGTCGCCTGCTGAAGGAGCAGAAGATGGCGCTGGATGCCGGCGCGCTGGAGAATCTGCTGCTGCAGCAGCAACAGACTGAGCAGCAGGCACTGCAGCAGCGCCAGCGCCAGGAGCAGCTGCGTCTGCAGCAGTTTCAGGAGGCGCAGCGCCAGG
***********************************.((.((((.(((.(((((((((.((..(((((((((.(((..........))))))))))))..)).)))).))))).)))))))..))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V085
CME W2 wing disc		 V135
CME W2 (wing disc line)		 V026
1182-4H cell		 V147
1182-4H cell		 V009
CMEL1		 V126
CME L1 		V028
CMEW1 Cl.8+ cell		 V033
CMEW1 Cl.8+ cell		 V091
fGS/OSS total  		 V127
G2		 V019
GM2 cell		 V031
GM2 cell		 V018
Kc167 cell		 V024
kc167 cell		 V073
mbn2 		V148
mbn2 		V075
ML-DmBG1-C1		 V129
ML-DmBG1-c1		 V076
ML-DmBG3-C2		 V130
ML-DmBG3-c2 		V034
ML-DmD16c3 cell		 V131
ML-DmD16-c3 		V021
ML-DmD21 cell		 V010
MLDmD20c5		 V036
ML-DmD20c5 cell		 V027
ML-DmD21 cell		 M005
ML-DmD32 cell		 M006
ML-DmD32 		V022
ML-DmD32 cell		 V035
ML-DmD32 cell		 V132
ML-DmD32 		V030
ML-DmD8 cell		 V134
ML-DmD8 		V029
ML-DmD9 cell		 V125
ML-DmD9		 M029
OSC cells (nuclear)		 M030
OSC cells (cytoplasmic)		 M031
OSC cells (whole cell)		 V144
OSC		 OSS2
OSS_s2		 OSS6
OSS_s6		 OSS7
OSS_s7		 OSS8
OSS_s8		 V032
S1 cell		 V146
S1 cell		 V008
S2-DRSC		 V145
S2-DRSC		 V067
S2-NP		 V020
S2R+ cell		 V025
S2R+ cell		 V074
S3		 V128
S3 		V011
Sg4		 V133
Sg4 		T004
OSC-4N		 T005
89-4N
................................................GGCGCGTTTCAGAATCTGCT............................................................................................... 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CGACGGCGCGCTGGAGAAACT.................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................AGCGCCAGCGCCAGGACGTGC.................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ACCAACAGACTGATCAGCA.................................................................... 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CAGCAGTTCCAGGAGGCG.......... 18 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TGGATGCCGTCGCCCTGG......................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................AGCTGCGTCTACAGTAGATT................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCAGCCCCAGCGCCATGAG........................................ 19 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GCAGCACCGTCTACAGCAGTT.................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................AGATGGCCCTGAATGCAGGC................................................................................................................ 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................AGACACTTCAGCAGCGCCAAC................................................ 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GCTGCCTCTTCAGCAGTTACA................. 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................GCAACTAATTGAGCAGCAGGC................................................................. 21 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................ACTGCAGCCTCACCAGCGCCA............................................ 21 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AAGAAGCAGAAGATGTCACTG......................................................................................................................... 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CAGCGCCAGGGCCAGCAGCA...................................... 20 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CAGAAGGCAGCGCAGCAGCGC.................................................... 21 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................CAGCAGGCACTGCAGAAGCAT.................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................CGCCCTTGTGAATCTGCTGC............................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate miRBase ID Alignment
dm3 chr2R:5145349-5145511 - ACCACGCTG---CGTCGCCTGCTGAAG-GA---GCAGAAGATGG---------CGCTGGATGCCGGCGCGCTGGAGAATCTGCTGCTGCAGCAGCAACAGACTGAGCAGCAGGCACTGCAGCAGCGCCAGCGCCAGG---AGCAGCTGCGTCTGCAGCAGTTTCAGGAGGCGCAGCGCCAGG
droSim3 2R:3809253-3809415 - ACCACGCTG---CGTCGACTGCTGAAG-GA---GCAGAAGATGG---------CGCTGGATGCCGGCGCGCTGGAGAACCTGCTGCTGCAACAGCAGCAGACTGAGCAGCAGGCGCTGCAGCAGCGCCAGCGCCAGG---AGCAGTTGCGTCTGCAGCAGTTCCAGGAGGCGCAGCGCCAGG
droSec2 scaffold_1:2777274-2777436 - ACCACGCTG---CGTCGACTGCTGAAG-GA---GCAGAAGATGG---------CGCTGGATGCCGGCGCGCTGGAGAACCTGCTGCTGCAACAGCAGCAGACTGAGCAGCAGGCGCTGCAGCAGCGCCAGCGCCAGG---AGCAGTTGCGTCTGCAGCAGTTCCAGGAGGCGCAGCGCCAGG
droYak3 2L:17799690-17799852 - ACTACGCTG---CGTAGACTGCTGAAG-GA---GCAGAACATGT---------CGCTGGATGCCGGGGCGCTGGAGAACCTGCTGCTACAACAGCAGCAGACTGAGCAGCAGGCGCTGCAGCAGCGCCAGCGCCAGG---AGCAGTTGCGTCTGCAGCAGTTCCAGGAGGCGCAGCGCCAGG
droEre2 scaffold_4929:17512646-17512808 + ACTACGCTG---CGCCGACTGCTAAAG-GA---GCAGAACATGT---------CGCTGGATGCCGGGGCGCTGGAGAACCTGCTGCTACAACAGCAGCAGACTGAGCAGCAGGCGCTGCAGCAGCGCCAGCGCCAGG---AGCAGTTGCGTCTGCAGCAGTTCCAGGAGGCGCAGCGCCAGG
droEug1 scf7180000409183:787310-787472 - TCAACGCTA---CGTCGCCTTCTAAAG-GA---GCAGAACATGT---------CACTGAGTCCAAGTGCGCTGGAGAACCTGCTGTTGCTACAGCAACAGACCGAGCAGCAGGCGCTGCAGAAGCGTCAGCGCGAGG---AGCAGCTGCGTCTGCAGCAGTTCCAAGAGGCGCAGCGTCAAG
droBia1 scf7180000301506:1579466-1579628 + ACCACGCTG---CGTCGCCTGCTGAAG-GA---GCAGAACATGT---------CGCTGGATCCTGGTGCGCTGGAGACTCTGCTCCTGCAGCAACAGCAGACCGAACAGCAGGCGCTGCAGCAGCGCCAGCGCCAGG---AGCAGCTGCGTCTGCAGCAGTTCCAGGAGGCGCAGCGGCAGG
droTak1 scf7180000415274:102774-102936 - ACCACGCTG---CGTCGCCTGCTAAAG-GA---GCAGAACATGG---------CGCTGGATCCAGGTGCGCTGGAGAGCCTGCTCCTGCAGCAGCAGCAGACCGAGCTGCAGGCACTGCAGCAGCGCCAGCGCCAGG---AGCAGCTGCGTCTGCAGCAGTTCCAGGAGGCGCAGCGTCAGG
droEle1 scf7180000491201:969933-970095 - ACCACGCTG---CGTCGCCTACTGAAG-GA---GCAGCACATGT---------CGCTGGATCCGGTTGCGCTGGAGAATCTGCTGCTGCAACAGCAGCAAACCGAGCAGCTGGCGCTGCAGCAGCGCCAGCGTCAGG---AGCAGCTGCGTCTGCAGCAGTTCCAGGAGGCGCAGCGTCAGG
droRho1 scf7180000777222:48788-48950 + ACCACGCTG---CGTCGCCTGCTGAAG-GA---GCAGCACATGT---------CGCTGGATCCGGGTGCGCTGGAGAATCTGCTGCTGCAACAGCAGCAAACCGAGCAGCAGGCACTGCAGCAGCGCCAGCGCCAGG---AGCAGCTGCGACTGCAGCAGTTCCAGGAGGCGCAGCGTCAGG
droFic1 scf7180000453851:1129651-1129813 + ACCACGCTG---CGTCGCCTGCTGAAG-GA---GCAGCACATGT---------CGCTCGATCCGAGTGCGCTGGAGAACCTGCTGCTGCAACAGCAGCAGTCCGAGCAGCAGGCGCTGCAGCAGCGCCAGCGCCAGG---AGCAGCTGCGTCTGCAGCAGTTCCAGGAGGCGCAGCGTCAGG
droKik1 scf7180000302476:538751-538913 - ACCACCCTG---CGCCGTCTACTAAAA-GA---GCAGAACATGT---------CCCTGGATCCAGAGGCGTTAGAGAATCTGCTACTGCAGCAGCAGCTGACCGAGCAGCAGGCGCTGCAGGAGCGCCAGCGGCAAG---AGCAGCAGCGTTTGCAGCAGTTTCAAGAGGCCCAGCGCCAGG
droAna3 scaffold_13266:8423757-8423922 + GCCACGTTG---CGTCGCCTGCTGAAG-GATCAGCAGCCCATGA---------CGCTGGATCCGGAGGCGCTGGAGAGCCTCCTGCTGCAACAGCAACTGAACGAACAGCAGGCCCTGCAGGAACGCCAGCGCCAGG---AGCAGTTGCGCCTGCAGCAGTTCCAGGAGGCCCAGCGCCAGG
droBip1 scf7180000396759:388818-388983 - GCCACATTG---CGTCGCCTGCTGAAG-GATCAGCAGCCCATGA---------CGCTGGATCCAGAGGCGTTGGAGAGCCTACTGTTGCAGCAACAGCTATCGGAGCAACAGGCCCTGCAGGAGCGCCAGCGGCAGG---AGCAGCTGCGCCTGCAGCAGTTCCAGGAGGCCCAGCGCCAGG
dp5 3:9212136-9212307 - ACCACGCTG---CGGCGCCTGCTGAAA-GA---GCGGGACATGGAGCAGCTGCAGCTGGACCAGGAGGCGCTCGAGAGCCTGCTGCTGCAGCAGCAGCAGTCCGAGCAGCAGGCCCTGCACCAGAGGCAGCTGCAGG---AGCAGCAGAGATTGCAACAGTTCCAGGAGGCCCAGCGTCAGG
droPer2 scaffold_4:4535129-4535300 - ACCACGCTG---CGGCGCCTGCTGAAA-GA---GCGGGACATGGAGCAGCTGCAGCTGGACCAGGAGGCGCTCGAGAGCCTGCTGCTGCAGCAGCAGCAGTCCGAGCAGCAGGCCCTGCACCAGAGGCAGCTGCAGG---AGCAGCAGAGATTGCAACAGTTCCAGGAGGCCCAGCGTCAGG
droWil2 scf2_1100000004822:1799325-1799487 + AGTACCTTG---AAGAGATTGGAGCAA-AT---GCAATTGCCAC---------TGCTCGATCAGGAGGTGCTCGAAAGTCTTTTGCTACGTGAACAGATGAACGAGAAGCAGGCATTGCAGCAAAGACAACTGGAGG---AGCAACAAAGGCTCCAGCAGCTTCAAGAGGCCAAAAGGAAAG
droVir3 scaffold_12855:1656623-1656760 - ACCAAGTTG---CGCCGCTTGCGCAATCGA---GC--------------------------------ACATTGCA---GCCGCTGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAACAGCAACAGCAGCAGCAGC---TTCAGTTGCAGCAGCAGCAGCTACAGTTGCAGCAGCAGCATG
droMoj3 scaffold_6308:431183-431345 - GC-----AGCAGCA---ACAGCAGCAG-GA---GCAGCAGCAGGAGC------AGCAGCAGGAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAG-

Generated: 02/13/2013 at 08:02 PM