ID:

dme_225

 Coordinate:

chr3L:4225846-4225927 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend:maturestarmismatch in alignmentmismatch in read

Predicted structure

-18.0 -17.7 -17.4 -17.2

Flybase annnotation

unknown

Sense Strand Reads

CAAGTGTTAGTAATGTTCTAGAGCCCGCCGACTGAAGGCCTTGCGTTCTTATCGGGGAAATAGACTCGGAGACCTCCCCTGATTAATGGAGGCGGTGATGAGTGGGGGAAGTGGGGTGGTGGGGTGGTGGGGGGATGCATGACTGGCTGAAAAGTCGGGCTAATCGCATCACGTTGCTCTGG
**************************************************.(((((........)))))...(((((.((.((((.((....)).)))).)).)))))........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V085
CME W2 wing disc		 V135
CME W2 (wing disc line)		 V026
1182-4H cell		 V147
1182-4H cell		 V009
CMEL1		 V126
CME L1 		V028
CMEW1 Cl.8+ cell		 V033
CMEW1 Cl.8+ cell		 V091
fGS/OSS total  		 V127
G2		 V019
GM2 cell		 V031
GM2 cell		 V018
Kc167 cell		 V024
kc167 cell		 V073
mbn2 		V148
mbn2 		V075
ML-DmBG1-C1		 V129
ML-DmBG1-c1		 V076
ML-DmBG3-C2		 V130
ML-DmBG3-c2 		V034
ML-DmD16c3 cell		 V131
ML-DmD16-c3 		V021
ML-DmD21 cell		 V010
MLDmD20c5		 V036
ML-DmD20c5 cell		 V027
ML-DmD21 cell		 M005
ML-DmD32 cell		 M006
ML-DmD32 		V022
ML-DmD32 cell		 V035
ML-DmD32 cell		 V132
ML-DmD32 		V030
ML-DmD8 cell		 V134
ML-DmD8 		V029
ML-DmD9 cell		 V125
ML-DmD9		 M029
OSC cells (nuclear)		 M030
OSC cells (cytoplasmic)		 M031
OSC cells (whole cell)		 V144
OSC		 OSS2
OSS_s2		 OSS6
OSS_s6		 OSS7
OSS_s7		 OSS8
OSS_s8		 V032
S1 cell		 V146
S1 cell		 V008
S2-DRSC		 V145
S2-DRSC		 V067
S2-NP		 V020
S2R+ cell		 V025
S2R+ cell		 V074
S3		 V128
S3 		V011
Sg4		 V133
Sg4 		T004
OSC-4N		 T005
89-4N
...............................................................................................................TGGGGTGGTGGGGTGGTGGG................................................... 20 0 1 89.00 89 5 0 2 1 0 6 0 0 1 1 1 0 2 2 3 3 1 4 4 11 0 4 1 2 0 1 3 9 1 0 3 1 5 0 2 0 0 0 0 0 0 0 0 0 2 0 5 0 2 0 0 1 0 0 0 0
...............................................................................................................TGGGGTGGTGGGGTGGTGGGG.................................................. 21 0 1 64.00 64 0 0 1 2 0 7 0 0 0 5 1 1 0 0 2 6 0 5 0 8 0 3 0 0 0 0 0 4 0 0 1 0 5 0 3 0 0 0 4 0 0 0 0 0 1 0 5 0 0 0 0 0 0 0 0 0
...............................................................................................................TGGGGTGGTGGGGTGGTGGGT.................................................. 21 1 1 23.00 23 0 0 0 1 0 3 0 0 0 4 0 0 0 0 1 0 0 0 0 4 0 3 0 0 0 0 0 2 0 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................TGGGGTGGTGGGGTGGTGG.................................................... 19 0 1 15.00 15 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 1 1 0 0 1 0 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
...............................................................................................................TGGGGTGGTGGGGTGGTGGGA.................................................. 21 1 1 11.00 11 0 1 0 1 0 2 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................GGGGTGGTGGGGTGGTGGG................................................... 19 0 1 9.00 9 1 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0
...................................................................................................................GTGGTGGGGTGGTGGGGG................................................. 18 0 1 8.00 8 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0
....................................................................................................................................................GCAAACTCGCGCTAATCGCA.............. 20 3 9 7.33 66 0 0 0 0 0 0 0 0 0 0 19 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GTGGGGTGGTGGGGTGGTGGGG.................................................. 22 0 1 6.00 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0
........................................................................................................GGGGAAGTGGGGTGGTGGGGT......................................................... 21 0 1 5.00 5 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GGGGGAAGTGGGGTGGTGGGGT......................................................... 22 0 1 5.00 5 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGGGGTGGTGGGGTGGTGGGGA................................................. 22 1 1 5.00 5 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGGGGTGGTGGGGTGGTGGGGAAA............................................... 24 2 1 4.00 4 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0
...............................................................................................................TGGGGTGGTGGGGTGGTGGGGT................................................. 22 1 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGGGGTGGTGGGGTGGTGGGC.................................................. 21 1 1 4.00 4 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GTGGTGGGGTGGTGGGGGG................................................ 19 0 1 4.00 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GTGGGGTGGTGGGGTGGTGGG................................................... 21 0 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGGGGTGGTGGGGTGGTGGGGG................................................. 22 0 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GTGGTGGGGTGGTGGGGGGAT.............................................. 21 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........AGTAATGTTCTAGAGCCCG........................................................................................................................................................... 19 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGGGGTGGTGGGGTGGTGGGGGG................................................ 23 0 1 3.00 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GGTGGTGGGGTGGTGGGGGGAT.............................................. 22 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................GGGGTGGTGGGGTGGTGGGG.................................................. 20 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GGTGGTGGGGTGGTGGGGGGA............................................... 21 0 1 3.00 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GTGGGGTGGTGGGGTGGTGGGGGGA............................................... 25 0 1 3.00 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0
...............................................................................................................TGGGGTGGTGGGGTGGTGGGGGGA............................................... 24 0 1 3.00 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CAAGTGTTAGTAATGTTCTAGAGCCCGCCGACTGAAGGCCTTGCGTTCTTATCGGGGAAATAGACTCGGAGACCTCCCCTGATTAATGGAGGCGGTGATGAGTGGGGGAAGTGGGGTGGTGGGGTGGTGGGGGGATGCATGACTGGCTGAAAAGTCGGGCTAATCGCATCACGTTGCTCTGG
**************************************************.(((((........)))))...(((((.((.((((.((....)).)))).)).)))))........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V085
CME W2 wing disc		 V135
CME W2 (wing disc line)		 V026
1182-4H cell		 V147
1182-4H cell		 V009
CMEL1		 V126
CME L1 		V028
CMEW1 Cl.8+ cell		 V033
CMEW1 Cl.8+ cell		 V091
fGS/OSS total  		 V127
G2		 V019
GM2 cell		 V031
GM2 cell		 V018
Kc167 cell		 V024
kc167 cell		 V073
mbn2 		V148
mbn2 		V075
ML-DmBG1-C1		 V129
ML-DmBG1-c1		 V076
ML-DmBG3-C2		 V130
ML-DmBG3-c2 		V034
ML-DmD16c3 cell		 V131
ML-DmD16-c3 		V021
ML-DmD21 cell		 V010
MLDmD20c5		 V036
ML-DmD20c5 cell		 V027
ML-DmD21 cell		 M005
ML-DmD32 cell		 M006
ML-DmD32 		V022
ML-DmD32 cell		 V035
ML-DmD32 cell		 V132
ML-DmD32 		V030
ML-DmD8 cell		 V134
ML-DmD8 		V029
ML-DmD9 cell		 V125
ML-DmD9		 M029
OSC cells (nuclear)		 M030
OSC cells (cytoplasmic)		 M031
OSC cells (whole cell)		 V144
OSC		 OSS2
OSS_s2		 OSS6
OSS_s6		 OSS7
OSS_s7		 OSS8
OSS_s8		 V032
S1 cell		 V146
S1 cell		 V008
S2-DRSC		 V145
S2-DRSC		 V067
S2-NP		 V020
S2R+ cell		 V025
S2R+ cell		 V074
S3		 V128
S3 		V011
Sg4		 V133
Sg4 		T004
OSC-4N		 T005
89-4N
....................................................................................................................................................GCAAACTCGCGCTAATCGCA.............. 20 3 9 1.11 10 0 0 0 0 0 0 0 0 0 0 7 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TAATCGCATCACGTTGCTCTGG 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GCCCGCCCACTGAAGGCCTC............................................................................................................................................ 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CCTGAATAATAGAGGCGGTTA.................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................ACCGATTAAAGGCCTTGCGTT....................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................CGGAGACCTCCCCTGGCTAAT............................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................CCCATCGCATCACGTTGCTAT.. 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............ATGTTGTAGCGCCCGCCGGCT..................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AATGGACGCGGTGAGGAGTGGG............................................................................ 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................TCGGGCTAATCGCCTCACGTT....... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TCCGGCTAACCGCGTCACGTT....... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
TACGTGTTAGTAAGGTTCTAG................................................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TCTAGAGCGCGCCTACTG.................................................................................................................................................... 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GCCTTGGGTGGTTATCGGGGAA........................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGGGGTGGTGGGGGGGTGGGG.................................................. 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................CGCGTTCTTATCGGGGAGATT........................................................................................................................ 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TGCGTTCTTGTCGGTGACATA........................................................................................................................ 21 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................ACGCGTTCTTATCGGGGTAAT......................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................GAAAACTCGCGCTAATCGCAA............. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GGGTTAATCACATCACGTTTC..... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................CTCTGATTAATCGAGGTGGTG..................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................CGGAGATGAGTGGGGGAAGAT..................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................GATGAGGGGGGGAAATGGGCTGG............................................................... 23 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................GAGCACGCCCACTGAAGGCCT............................................................................................................................................. 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GGGTTCGTAATGTTCAAGAGC.............................................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................CGTTCTTGTCGGTGACATA........................................................................................................................ 19 3 17 0.35 6 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................ACACCTCCCCTAATTAAT............................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TGTTCTTGAGCCCGCCGGCTT.................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CTGATTAAAGGTGGCTGTGA.................................................................................... 20 3 14 0.21 3 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CCGCCGACAGAAGGACTTGA.......................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CCTGGTGAAAGGAGGCGGTGA.................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CTGATTAAGGTTGGCGGTGA.................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AGTGGGGTGGTGAGGTGGGGG.................................................... 21 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AAGTCGAATGGTGGGGTGGTG..................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CCTGATGGCCTAGCGTTCT..................................................................................................................................... 19 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................ATGTATTACTGGCTAAAAAGT........................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CTGATGAGTGGGGTGAGTGGG................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................GACCGCGCCCGATTAATGG............................................................................................. 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TAGACCGGGACACCTCCCC....................................................................................................... 19 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GGTGGGGGGGGGATGCATAAT....................................... 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GCGATGGGTTGGGGAAGTGGG................................................................... 21 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AATGGAGGCGATGATGAGGGA............................................................................. 21 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................GGGGTGATGGATTGGTGGGGG................................................. 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................GGGGTAGTCGGGTGGTGGGTG................................................. 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GTGGTGGGGTTGTGGGGGCAG.............................................. 21 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TGGGGAAAGCGGGGTGGAGGG........................................................... 21 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate miRBase ID Alignment
dm3 chr3L:4225796-4225977 - CAAGTGTTAGTAATGTTCTAGAGCCCGCCGACT------GAAGGCCTTGC-G------TTCTTATCGGG----------GAAATA---GAC------------------TCGG-AGA--C-CT-CCCCTGATTAATG--------------------------GAGGC-------GGTGATGAGTGGGGGAAGTGGGGTGGTGGGGTGGTGG-----------------GGGGATGCATGACTG-------------GCTGAAAAGTCG----GG----CTAAT--------------------------CG--CATCACGTTG----CTCTGG
droSim3 3L:3767566-3767747 - CAAGTGCTAGTAATGTTCTAGAGCCCGCCGGCT------GAAGGCCTTGC-G------TTCTTATCGGG----------GAAATA---GAC------------------TCGG-AGA--C-CT-CCCCTGATTAATG--------------------------GAGGC-------GGTGATAAGTGGGGGAAGTGGAATGGTGGGATGGTGG-----------------GGGGATGCATGACTG-------------GCTGGAAAAGCG----GT----CTAAT--------------------------CG--CATCACGTTG----CTCTGG
droSec2 scaffold_2:4222565-4222762 - CAAGTGCTAGTAATGTTCTAGAGCCCGCCGGCT------AAAGGCCTTGC-G------TTCTTATCGGG----------AGATTAGGAGACTC---------GGGAGACTCGG-AGA--C-CT-CCCCTGATTAATG--------------------------GAGGC-------GGTGATAAGTGGGGGAAGTGAAATGGTGGGATGGTGG-----------------GGGGATGCATGACTG-------------GCTGGAAAAGCG----GTCTGTCTAAT--------------------------CG--CATCACGTTG----CTCTGG
droYak3 3L:4800323-4800498 - CAAGTGCTAGTAATGTTCTAGAGTCCGCCGGCT------GAAGGCCTTGC-G------TTCTTATCGGG----------GAAATA---GAC------------------TCCGAAGA--C-CT-CCCCTGATTAAT----------------------------AGTA-------GGTGATAAGT---------------GG-------TGGGGGAGGGGGACCAAGTGGGGGATGGATGACTG-------------GCTGGAAACGCG----AG----CTAAT--------------------------CG--CATCACGTTG----CTCTGG
droEre2 scaffold_4784:6938251-6938404 - CAAGTGCTAGTAATCTTCTAGAGCCCGCCGGCT------GAAGGCCTTGC-G------TTCTTATCGGG----------GAAATA---GAC------------------TCGG-AGA--C-CT-CCCCTGATTAAT----------------------------AGGC-------AGTGATAAGT---------------GG----------------------------GGGATGCATGACTG-------------GCTGGAAACGCA----AG----CTAAT--------------------------CG--CATCACGTTG----CTCTGG
droEug1 scf7180000409466:1992205-1992353 - CAAGTCTTAGTAATATTTTAGAGCCCGGCGGCT------AAAGGCCTCCC-G------TTCTTATCGAA----------GAAATA---GAC------------------TCTG-AGA--C-CT-CCCATGATTTATT----------------------------GAA-------GGTGATAACT---------------AA----------------------------G----GGATGACTG-------------GCTGAAAACCCG----GG-------------------------------CTATCG--CTTAGCGTGG----CTCTTG
droBia1 scf7180000302428:936198-936353 - CAAGTGTTAGTAATGTTCTAGAGCCCGGCGGCT------GAAGGCCTTCTCT------GTCTTATCGGGG---------GAAATA---GACTC----------TGCGACTGGG-AGG--T-CTCCCCCTGGTTTAT----------------------------AGGA-------GGTGATAGCT---------------GA--------------------GCAGGCCGG----CGATGACTG-------------GCCACAAACTGG----GG-------------------------------TTATC------------------TCGCG
droTak1 scf7180000415941:34096-34273 - CAAGTGTTAGTAATGTTCTAGAGCTCGACGGCTAAAGAAGAAGGCCTTGT-GTGTGATTTCTTATCGCGG---------GAAATA---GACTCTCTGTGAGACGGAGA--CGG-AGA--C-CT-CCCATGATTTATG---------------------------AAGC-------GGTGATAACT---------------GA----------------------------GGAA-TGATGACTG-------------GCTGAAAACTCGGGGCGG-------------------------------CTATCT----------CT----CTCTGG
droEle1 scf7180000491249:5097364-5097530 - CAAGTGTTAGTAATGTTCTAGAGTCCGGCGGCT------GAAGGCCTTTTTG------CTCTTATCGGGG---------GAAATA---GAC------------------GCGG-AGA--C-CT-CCCCTGGTCTATTATACATA--C-------A--------TAGGT-------GGTGATAAGT---------------GA-------CGG------------------G----GGATGACTG-------------GCTGGAATG-CA-GGCGG-------------------------------CTATCG--CATCACGTTG----CTCTGG
droRho1 scf7180000779786:18986-19135 - CAAGTCTTAGTAATGTTCTAGAGTCCGGCGGCT------GAAGGCCTTTC-G------TTCTTATCGGG----------GAAATA---GAC------------------TATG-AGA--C-CT-CCCCTGATTTAT----------------------------AGGT-------GGTGATAAGT---------------GT-------TG-------------------G----GGATGACTG-------------GCGGGAATC-CA----GG-------------------------------CAATCG--CATCACGTTG----CTCTGG
droFic1 scf7180000454113:1461103-1461254 - CAAGTGTTAGTAATATTCTAGAGCCCGGCGGCT------GAAGGCCTTGTCA-----TTTCTTATCGGG----------AAACGA---GAC------------------TCTG-GGA--C-CT-CCACTGATTTATG----------------------------GTC-------GGTGATAACT---------------GA-------C--------------------TGGCTGGATGACTG-------------GCTAGAATC-GA----AG-------------------------------CTATCTCTCCCCAC---------GCTGG
droKik1 scf7180000302383:615736-615906 - CAAGTGTTAGTAATCTTCTAGAGCTCGCCAGCGAGT---GAAGGTCTC----------CGCTTATCGGGAACGGGACGGGAGATA---GTCTC------------ACATAGAG-AGA--C-CTCCCCGTGATTTATAGC---TACGCCGGGGGCA-----------TAAGTGATGAGTGATAAGT---------------AA---------------------------------ACATGACTG-------------GGCGAAAAGC----------------------------------------------------CGTGA----CTATAA
droAna3 scaffold_13337:14650108-14650311 - CAAGTGGTAGTAACGTTCTAGAGCTCGACGGCT------AAAGGCCTTGC-T------CGCTTATCGGG----------GCCC--------------------GGAGATTCAG-ATC--CGTT-CCCCTGATTTATTACC----CCCCGGGGTGATAGCCAGTGAGTG-------AGTGATAAGT---------------G----------------------------------TGATGACTGGCACTGGGGACTGGCGGGAA---------------CTAATGTCATCACGACGACGACGACTACT-------ATCAAGTTGCGGGCTCTG-
droBip1 scf7180000396641:660241-660414 + CAAGTGGTAGTAACATTCTAGAGCTCGCCAGCT------AAAGGCCTTGC-T------CGCTTATCGGG----------GCGAG-----------------CCGGAGATTCAG-AGATCCGTT-CCCCTGATTTATTACC----CCCCGGGGC-----------AGTA-------AGTGATAATG---------------GT----------------------------G----TGATGACTG-------------GCGGGAA---------------CTAATGTCATCACGA------------CT-------ATCAAGTTGCG--GGCTTG

Generated: 02/13/2013 at 06:28 PM