ID:

dme_186

Coordinate:

chr3R:11132694-11132754 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in alignment

mismatch in read

Predicted structure

-28.9	-28.5	-28.3

Flybase annnotation

unknown

Sense Strand Reads

GAAGGCGCTGCTCCTCCTGCTGATGGCGCCGCTCCTCCAGCCGAGGCTGCCGCAGCTCCAGCTGATGCAGCGGCTCCAGCTGCCGAGGCTGCTCCAGCTGAAGCACCTGCAGCCGAAGCCACCGCCGCCGAAGCTCCTCCAGCTGAAGCAGCGCCCGCCGA ************************************************.((((((.((((((..((((((((.......)))...)))))..)))))).)))...))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V085 CME W2 wing disc	V091 fGS/OSS total	V127 G2	V019 GM2 cell	V031 GM2 cell	V073 mbn2	V148 mbn2	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V010 MLDmD20c5	V036 ML-DmD20c5 cell	M005 ML-DmD32 cell	M006 ML-DmD32	V022 ML-DmD32 cell	V035 ML-DmD32 cell	V132 ML-DmD32	OSS2 OSS_s2	OSS6 OSS_s6	V146 S1 cell	V008 S2-DRSC	V074 S3	V128 S3	V011 Sg4	V133 Sg4	T004 OSC-4N
......................................................................................................................................TCCTCTACCTGAAGCAGCGCGCG....	23	3	1	21.00	21	0	0	0	0	0	0	0	0	0	0	0	0	21	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CGCAGCTCCAGCTGATGCAGCG.........................................................................................	22	0	1	15.00	15	0	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	0	3	0
......................................................................................................................................TCCTGTACCTGAAGCAGCGCCCG....	23	3	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGCACCTGAAGTAGCGCCCG....	23	3	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCTACCTGAAGCAGCGCGC.....	22	3	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCTACCTGAAGTAGCGCCCG....	23	3	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCGACCTGAAGCAGCGCGCG....	23	3	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCCACCTGAAGTAGCGCGCG....	23	3	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGCAGCTGAAGTAGCGCGCG....	23	3	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTTCACCTGAAGTAGCGCCCG....	23	3	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGCACCTGAAGCAGCGCGCG....	23	3	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGTACCTGAAGCAGCGCCC.....	22	3	2	2.50	5	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CGCAGCTCCAGCTGATGCAG...........................................................................................	20	0	1	2.00	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................TCCTCTACCTGAAGTAGCGCCC.....	22	3	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GCAGCTCCAGCTGATGCAGCGG........................................................................................	22	0	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................TCCTGCACCTGAAGTAGCGCCC.....	22	3	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCTACCTGAAGCAGCGCCCG....	23	2	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGCACCTGAAGTAGCGCC......	21	3	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTTCAGCTGAAGTAGCGCGCG....	23	3	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCTACCTGAAGCAGCGCG......	21	3	2	2.00	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCTACCTGAAGTAGCGCC......	21	3	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGCAGCTGAAGTCGCGCCCG....	23	3	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTACACCTGAAGTAGCGCCCG....	23	3	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGTACCTGAAGCAGCGCC......	21	3	4	1.75	7	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGCAGCTGAAGTAGCGCG......	21	3	4	1.25	5	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGCACCTGAAGCACCGCCCG....	23	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTTTACCTGAAGCAGCGCCCG....	23	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCAGCCACCTGAAGCAGCGCCCG....	23	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................CCGCTAGCTGAAACAGCGCCC.....	21	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCTACCTTAAGCAGCGCCC.....	22	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................GCTCTACCTGAAGCAGCGCCC.....	21	3	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTTTACCTGAAGCAGCGCCC.....	22	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCGACCTGAAGTAGCGCC......	21	3	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCCACCTGAAGTAGCGC.......	20	2	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCCACCTGAAGTAGCGCGC.....	22	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCTACCTGAAGTAGCGC.......	20	3	6	1.00	6	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCCGCCTGAAGCCGCGCCCG....	23	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CGCGGCTCCAGCTGATGCAGCG.........................................................................................	22	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................CGCAGCTCCAGCTGATGCAGCC.........................................................................................	22	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................TCCACCACCTGAAGAAGCGCCC.....	22	3	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGCACCTGAAGAAGCGCCCG....	23	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTACAGCTGAAGTAGCGCG......	21	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GCAGCTCCAGCTGATGCAGCGGC.......................................................................................	23	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCTACCTGAAGCCGCGCCCG....	23	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGCAGCCGAAGTAGCGCCCG....	23	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CGCAGCTCCAGCTGATGCAGCGT........................................................................................	23	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CGCAGCTCCAGCTGATTCAGCG.........................................................................................	22	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................ACCGCCGCCGAAGCTCCTCCAGCTGAA..............	27	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................TCACCCAGCTGAAGGAGCGCCCG....	23	3	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................CCGAGGATACCGTAGCTCCAG....................................................................................................	21	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCCACCTTAAGTAGCGCCCG....	23	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CTGCTCCAGCTGAAGCAGCGC.......	21	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................CTGCTCCAGCTGAAGCTCCTGC...................................................	22	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCCACCTGACGTAGCGCCCG....	23	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GCAGCTCCAGCTGATGCAGCGGCT......................................................................................	24	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................TCCTCTACCTGAAGCAACGCCCG....	23	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGCCCCTGAAGCAGCGCCCG....	23	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTTCACCTGAAGCAGCGCCC.....	22	2	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCATCCAGCTGAAGTAGCGCGCG....	23	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCGCCAGCTGAAGCAGCGCG......	21	2	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TGCTTCAGCTGAAGTAGCGCCCG....	23	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCATCCAGCTGAAGTAGCGCGC.....	22	3	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCTACCTGAAGCAGCGCCC.....	22	2	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCTACCTGAAGCAGCGCCTG....	23	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGCACCTGAAGCAGCGCC......	21	2	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCCACCTGAAGTAGCGCG......	21	3	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCGCTACCTGAAGCAGCGCCCG....	23	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCTACCTCAAGCAGCGCCCG....	23	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTTCAGCTGAAGTAGCGCG......	21	3	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGTAGCTGAAGCAGCGCGCG....	23	3	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................TCAGGCTGCCGAGGCTTCTCC..................................................................	21	3	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TGGTCCTCCTGCTGATGGGG.....................................................................................................................................	20	2	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGCACCTGAAGGAGCGCCCG....	23	3	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCATGGAGCTGAAGCAGCGCCC.....	22	3	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GACGCGGCGGCTCCAGCTGCC.............................................................................	21	2	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................TCCTGCACCTGACGCAGCGCCCG....	23	3	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GCAGCTCCAGCTGATGCACGG.........................................................................................	21	2	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
......................................................................................................................................TCCTGCACCTGAAGCAGCGCGC.....	22	3	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTATACCTGAAGCAGCGCCCG....	23	3	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
GAAGGCGTTGCTCGTCCCGCT............................................................................................................................................	21	3	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCGCCACCTGAAGCAGCGCGCG....	23	3	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGCACCTGAACCAGCGCCCG....	23	3	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGCACCTGAAGTAGCGC.......	20	3	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCATCCAGCTGAAGTAGCGCG......	21	3	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGCACCTGAAGCAGCGCG......	21	3	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................CTGCTCCAGCTGAAGCTCC......................................................	19	1	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................TCTACCTGAAGCAGCGCCC.....	19	2	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTTTACCTGAAGCAGCGCC......	21	3	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................GATGGCGCCGCTCATGCGGCC.......................................................................................................................	21	3	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGCACCTGAAGGAGCGCC......	21	3	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TCTACCTGAAGTAGCGCCCG....	20	3	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCGACCTGAAGCAGCGCG......	21	3	7	0.29	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCTACCTGAAGCCGCGCC......	21	3	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........GCTCGACTTGCTGATGGCGCC...................................................................................................................................	21	3	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCGGCACCTGAAGCAGCGCC......	21	3	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................GCACCCGCACGCGAAGCCACC......................................	21	3	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................CAGCCTGGGCCGCCGCAGCTC.......................................................................................................	21	3	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGGACCTGAAGCAGCGCC......	21	3	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCGCCACCTGAAGCAGCGCG......	21	3	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGTAGCTGAAGCAGCGCGC.....	22	3	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTACACCTGAAGTAGCGC.......	20	3	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGTACCTGAAGCAGCGC.......	20	3	15	0.20	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTTCAGCTGAAGTAGCGCA......	21	3	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................TGAAGATGGCGGCGCTCCTCC...........................................................................................................................	21	3	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TGCTCTAACTGAAGCAGCGCC......	21	3	5	0.20	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CTTTAGCCGAAGCTGCCGCAG..........................................................................................................	21	3	6	0.17	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................CGAAGGGACCGCCGACGAAG............................	20	3	6	0.17	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCAGCCAGCTGACGCAGCGCC......	21	3	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................CCCCCGCTTCCGAAGCTCCTC......................	21	3	6	0.17	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................TTCTCCGGCTGAAGCACCT.....................................................	19	2	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCCACCTGAACCAGCCCC......	21	3	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GCCGCACCAGATGAAGCACCT.....................................................	21	3	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GCTCGTCTTGTTGATGGCGCC...................................................................................................................................	21	3	7	0.14	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTCTACCTGAAGCCGCGC.......	20	3	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................GCCGCAGCTCCAGCCATTGCA............................................................................................	21	3	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGCAACTGAAGTAGCGC.......	20	3	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................AGGCGACGCCACCGCCGCAGA..............................	21	3	8	0.13	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................AGCTGAGGCTGCTCCAGCTG.............................................................	20	2	8	0.13	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................GCAGGCGAAGCCACCGCTGGC................................	21	3	8	0.13	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................GCCTCCACCTGAACCAGCGCC......	21	3	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................CAGGTAAAGCAGCGCCAGCCG.	21	3	8	0.13	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GCACCAGAAGCCAAAGCCACC......................................	21	3	10	0.10	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTTCACCTGAAGTAGCGC.......	20	3	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCATGCAGCTGAAGCAGCGCG......	21	3	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................AGCCGAAGACATCGCCGC.................................	18	2	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........GCTCCGCGTGCTGGTGGCGC....................................................................................................................................	20	3	12	0.08	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGCACCTGAAGCAGAGC.......	20	3	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................ATGCACCTGAAGCAGCGCCC.....	20	3	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................TTCTCCAGCTGAAGCACCA.....................................................	19	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCCGCAGCTGAAGTAGCGC.......	20	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTTCACCTGAAGTAGCGCC......	21	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TGGCAGCTCCAGCTGAAG..........................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCATGCAGCTGAAGAAGCGC.......	20	3	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Anti-sense strand reads

GAAGGCGCTGCTCCTCCTGCTGATGGCGCCGCTCCTCCAGCCGAGGCTGCCGCAGCTCCAGCTGATGCAGCGGCTCCAGCTGCCGAGGCTGCTCCAGCTGAAGCACCTGCAGCCGAAGCCACCGCCGCCGAAGCTCCTCCAGCTGAAGCAGCGCCCGCCGA ************************************************.((((((.((((((..((((((((.......)))...)))))..)))))).)))...))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V085 CME W2 wing disc	V135 CME W2 (wing disc line)	V028 CMEW1 Cl.8+ cell	V033 CMEW1 Cl.8+ cell	V091 fGS/OSS total	V127 G2	V019 GM2 cell	V031 GM2 cell	V073 mbn2	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V010 MLDmD20c5	V036 ML-DmD20c5 cell	M005 ML-DmD32 cell	M006 ML-DmD32	V022 ML-DmD32 cell	V035 ML-DmD32 cell	V132 ML-DmD32	V030 ML-DmD8 cell	V029 ML-DmD9 cell	V032 S1 cell	V146 S1 cell	V008 S2-DRSC	V145 S2-DRSC	V067 S2-NP	V074 S3	V128 S3	V011 Sg4	V133 Sg4	T004 OSC-4N
.......................................................................................................................CACCGGCGCCGAAGCTCCCAC.....................	21	3	2	201.50	403	0	0	0	0	0	0	0	6	0	0	0	0	0	61	42	258	10	24	1	0	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................CACCGGCGCCGAAGCTCCCA......................	20	3	3	109.00	327	0	0	0	0	0	0	0	2	0	0	0	0	0	77	11	220	13	2	0	0	0	0	0	0	0	0	0	0	0	2
......................................................................................................................TCACCGGCGCCGAAGCTCCC.......................	20	3	4	10.00	40	0	0	0	0	0	0	0	0	0	0	0	0	0	20	1	13	5	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CACCGGCGCCGAAGCTCCC.......................	19	2	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................ACCGGCGCCGAAGCTCCCAC.....................	20	3	4	6.75	27	0	0	0	0	0	0	0	2	0	0	0	0	0	15	1	7	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CACCGGCGCCGAAGCTCCCCC.....................	21	2	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................CCACCGGCGCCGAAGCTCCCAC.....................	22	3	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CACCGGCGCCGAAGCTCCCCCT....................	22	3	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CACCGACGCCGAAGCTCCCAC.....................	21	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................CTCCAGCTCAAGCACCTGC...................................................	19	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GGTCCAGCCGATGCAGCGGCTC.....................................................................................	22	2	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGCTCCAGCTGTTGCACCGGC.......................................................................................	21	2	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TCACCGGCGCCGAAGCTCCT.......................	20	2	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CACCGCCGCCGAAGCTCCCACT....................	22	3	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TCACCGCCGCCGAAGCTCCCAC.....................	22	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CACCGGCGCCGAAGCTCCCGC.....................	21	3	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................GCACCGGCGCCGAAGCTCCC.......................	20	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................GAACCACCTGCAGCCGAAGCA.........................................	21	2	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GCGCTGATCCTCCTTCTGATGT.......................................................................................................................................	22	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................ACCGGCGCCGAAGCTCCCCCT....................	21	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................ACCCAAGGCTACCGCAGCTCC......................................................................................................	21	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CCCCGGCGCCGAAGCTCCCCC.....................	21	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GCTCCTCCAGCTGAAGCAGCG........	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
........................................................................................................CCCTGCAGCCGGAGCCACCGC....................................	21	2	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CACCGGCGCCGATGCTCCTCCA....................	22	2	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CGCCAGCCCAGGCTGCCGAAG..........................................................................................................	21	3	4	0.75	3	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CTCCAACCCAGGCTGCCTCAG..........................................................................................................	21	3	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................CCGAAACCCCCGCCGGCGAAG............................	21	3	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AATGGCGCCGCTCCTCCGGCC.......................................................................................................................	21	2	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..............................GGTACTCCAACCGAGGCTGCC..............................................................................................................	21	3	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................CAGCTCCAGCTGAAGCACTTG....................................................	21	2	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GCCGACGCTGCTCCAGCTGAA...........................................................	21	1	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................GATGCGGCGGCTCCAACCGCCG............................................................................	22	3	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CGCTACTCCAGCCCAGGCTT................................................................................................................	20	3	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CACCGGCGCCGAAGCCCCCCC.....................	21	3	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CCGCCAGCCCAGGCTGCCGTA...........................................................................................................	21	3	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................CCACCGGCGCCGAAGCTCCCA......................	21	3	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AGCTCCAGCTGTAGCACCTGC...................................................	21	2	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................AAGTTCCTCCAGCCGAAGCA...........	20	2	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CGCCAGCCAAGGCTGCCGAAG..........................................................................................................	21	3	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................CCAGCTGCCGAGTCTCCCCCA.................................................................	21	3	3	0.33	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................CCCAAGTCACCGACGCCGAAG............................	21	3	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CTCCAGCCGAGGCTTCCTCAC..........................................................................................................	21	3	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CACCGGCGCAGAAGCTCCCCC.....................	21	3	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TGGCGTCGCTCCTCCACCGGA.....................................................................................................................	21	3	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CTCCTTCCGATGGCGCCCCTC...............................................................................................................................	21	3	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CAGAAGCTCCTCCCGCTGAAG.............	21	2	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CACCGCCGCTGAAGCTCCACCT....................	22	3	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CCGCTCTTTCAGCCGAGCCTG................................................................................................................	21	3	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CACCGGCGCCGAAGCTCCA.......................	19	2	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CCTCCAGCCCAGGCTGACTCA...........................................................................................................	21	3	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................AAGGCTGCCTGAGCTCCAGCT..................................................................................................	21	3	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................AGCTCCTCCAGCTGTAGC............	18	1	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................AAGGCTGACGGAGCTCCAGCT..................................................................................................	21	3	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................CTGATGGCTCCGCTCCTCAAT.........................................................................................................................	21	3	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CACCGGCGCCGAAGCTCCGA......................	20	3	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CGCCAGCCCAGGCTGCCTCAG..........................................................................................................	21	3	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AGCTCCAGCGGTAGCACCTGC...................................................	21	3	13	0.31	4	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AGCTCCAGCTGATGCACCTGC...................................................	21	2	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGCTCCAGCTGATGCACCTGC.......................................................................................	21	2	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CCTCTTGCTGATTGCTCCGC.................................................................................................................................	20	3	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCTGCTCATTGCGCCGCTCCTC............................................................................................................................	22	3	5	0.20	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................CTCCAGCGCAAGCACCTGCTG.................................................	21	3	10	0.20	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................GCGCCGAAGCTCCTCCTGCTA................	21	3	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................GCTGCCGAGGCTGCTATAGT...............................................................	20	3	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................TCCAGCCCATGCTGCCTCAGC.........................................................................................................	21	3	6	0.17	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................AAGCTGAAACACCTGCAGCCA..............................................	21	3	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................TGCTGATCCCGCCGCTCATCCA..........................................................................................................................	22	3	7	0.14	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................TGCTCCACCTGAACCACCTGC...................................................	21	2	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CCTGATGCCTCCGCTCCTCCA..........................................................................................................................	21	3	7	0.14	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................CTCCAGCGGTAGCACCTGCTG.................................................	21	3	15	0.13	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................GAGGCTGTTCCAGATGTAGC.........................................................	20	3	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GGTGGTGGCGCCTCTCCTCCA..........................................................................................................................	21	3	8	0.13	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................GCCAGCCCAGGCTGCCCCAGC.........................................................................................................	21	3	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............CCTGCTCATGGCGCCGTCCC..............................................................................................................................	20	3	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GCCCTGCTACTCCTTCTGATG........................................................................................................................................	21	3	9	0.11	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................CTACAGCAAATGCAGCGGCTC.....................................................................................	21	3	10	0.10	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................CAACAGCTAATGCAGCGGCTC.....................................................................................	21	3	10	0.10	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GCTGCTCCTCCTGCTGATC........................................................................................................................................	19	1	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................CCTCTGTCGAAGCTCCTCCA....................	20	3	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................GCTGTTCCCGCCGCTCCTCCAG.........................................................................................................................	22	3	10	0.10	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................GCCAGCCGAAGCCGCCGCCGCC................................	22	3	11	0.09	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CTGGCGCGTCTCCTCCAGCCG......................................................................................................................	21	3	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CGTTGCTCCTTCTGGTGATGG.......................................................................................................................................	21	3	13	0.08	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GCTGATTGTGCCGCTCCTCCC..........................................................................................................................	21	3	13	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................CACCAGCTCAAGCACCTGCTG.................................................	21	3	14	0.07	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................AACCACATGCAGCCCAAGCC.........................................	20	3	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AGCTCCTGCTGAAGCACCTA....................................................	20	3	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CTCTTCCTCCTGATGGCG.....................................................................................................................................	18	2	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................GCTGAGGCAGCAGGTCCAGCT................................................................................	21	3	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..........................................................................TCCAGCTGCCGAGGCTAAG....................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................GCTGGTCCCGCCGCTCCTCCA..........................................................................................................................	21	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................CCTCCAGCGGTAGCACCTGC...................................................	20	3	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................ACGCTTCCGCAGCGCCAGCT..................................................................................................	20	3	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CTCCTCTAGCGAAAGCAGC.........	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GGGCGCCGAAGCTCCCCC.....................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CTGCTCCTCCTGCTGAGCGCT.....................................................................................................................................	21	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................ATCACCTCCAGCCGAAGAC.........................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................ACGCTTCCGCAGCGCCAGCTG.................................................................................................	21	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................AGAAGCACCTCCAACTGAAG.............	20	3	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Re-alignment of all predicted orthologs

Species	Coordinate	Alignment
dm3	chr3R:11132644-11132804 +	GAAGGCGCTGCTCCTC---CTGCTGATGGCGCCGCTCC---TCCAG---------------------CCGAGGCTGCCGCAGCTCCAGCTG---ATGCAGCGGCTCCAGCT------------GCCGAGGCTGCTCCAGCTG---AAGCACC------------------TGCAGCC---------GAAGCCA---CCGCCGCCGAAGCTCCTCCAGCTGAAGCAG---CGCCCGCCGA
droSim3	chr3R_Mrandom_150:1285-1445 +	GAAGGCGCTGCTCCTC---CTGCTGATGGCGCCGCCCC---TCCAG---------------------CCGAGGCTGCCGCAGCTCCAGCTG---AAGCAGCGGCTCCAGCT------------GCCGAGACTGCTCCAGCTG---AAGCTCC------------------TGCAGCC---------GAAGCCC---CCGCCGCCGAAGCTCCTCCAGCTGAAGCCG---CTGCCGCCGA
droSec2	scaffold_0:10819120-10819265 -	GAAGGCGCTGCTCCTC---CTGCTGATGGCGCCGCTCC---TCCAG---------------------CCGAGGCTGCCGCAGCACCAGCTG---ATGCAGCGGCTCCAGCT------------GCCGAGGCTGCTCCAGCTG---AAGCTCC------------------TGCA---------------------------GCCGAAGATGCTCCAGCTGAAGCCG---CTCCCGCCGA
droYak3	3R:15300242-15300402 -	GACGGTGCTGCTGCTC---CTGCTGAAGGCGCTGCTCC---TCCAG---------------------CAGAGGCTGCCGCAGCTCCAGCTG---ATGCAGCGGCTCCAGCT------------GCCGAGGCCGCTCCAGCTG---AAGCCCC------------------TGCTGCC---------GAAGCTC---CCGCCGCCGAAGCTCCTCCAGCTGAGGCCG---CGCCCGCCGA
droEre2	scaffold_4770:10656366-10656526 +	GAGGGTGCTGCTCCTC---CTGCTGAGGGTGCTGCTCC---ACCAG---------------------CTGAGGCTGCCGCAGCTCCAGCTG---ATGCAGCAGCTCCAGCT------------GCCGAGGCTGCTCCAGCTG---AAGCTCC------------------TGCTGCC---------GAAGCCC---CCGCCGCCGAAGCTCCTCCAGCTGAAGCCG---CGCCCGCAGA
droEug1	scf7180000409444:96800-96969 -	GAGGGTGCTGCTCCTC---CTGCTGAGGGTGCTGCCCC---ACCAG---------------------CTGAAGGTGCCGCTCCTCCTGCTG---ACGCACCGGCTCCTGCTGCCGAGGGTGAA------GCTCCACCGGCCG---AG---------------GCTGCTCCTGCCGCC---------GAAGCAC---CAGCTGCCGAAGCTGCACCAGCTGAAGCTG---CCCCCGCTGA
droBia1	scf7180000302402:4112831-4113006 +	GAGGGTGCTGCTCCTC---CTGCTGAGGGTGCTGCTCC---TCCGG---------------------CTGATGGTGCTGCGGCTCCTGCTG---AAGCAGCTACTGCTCCTGCCGAGGGAGAA------GCTGCTCCT------------CCTCCGGCTGAAGCTGCTCTTGCCGCC---------GAAGCCC---CAGCCGCCGAAGCTGCTCCAGCTGAAGCCC---CAGCCGCCGA
droTak1	scf7180000415310:805429-805574 -	GAAGGGGCTGCTCCTC---CGGCAGAAGGTGCTGCTCC---TCCTG---------------------CTGAGGGGGCTGCTGCTCCTGCTG---AGGGAGCTGCTCCTCC------------------------TCCTGCTG---ACGCAGC------------------GGCTCCTCCCGCC---GA------------GGGAGAAGCTCCTCCGGCTGAAGCTG---CTCCATCTGA
droEle1	scf7180000491046:4326823-4326978 +	GAGGCTGCTGCTGCTG---CTACTGAT--CGCTGCTGC---TGCGG---------------------CCAATGCTGCTGCGGCTGATGTTG---CTGCTGCTGATGCTGCT------------GCGGCTTATGCTGCTGCTG---ATGCTGC------------------TGCGGCC---------TATGC------TGCTGCTGATGCTGCTGCGGCTGATGTTG---CTGCTGCTGA
droRho1	scf7180000767960:21586-21755 +	GAGGGTGCTGCTCCAC---CAGCTGAGGGTGCTGCTCC---TCCAG---------------------CTGAAAGTGCTGCTGCTCCTGCTG---AGGCAGCTCCTCCTGCTGCCGAGGGCGAA------GCTCCTCCGGCTG---AA---------------GCGGCTCCCGCCCCT---------GAAGCTG---CTCCCGCTGAAGCTGCTCCGGCGGAAGCTG---CCCCCGCAGA
droFic1	scf7180000452523:474117-474292 +	GAGGGAGCTGCTCCACCACCTGCTGAGGGTGCTGCTCC---TCCAG---------------------CCGAAGGTGCTGCTCCACCTGCCG---AGGCAGCTGCTCCACCAGCCGTGGGAGAA---GCTCCTCCTCCCGCTG---AA---------------GCTGCCCCAGCTGCC---------GAGGCTC---CACCAGCCGAAGCTCCACCAGCCGAAGCTG---CTCCCGCTGA
droKik1	scf7180000302706:495001-495179 +	GAGGGTGCTGCTCCTC---CGGCTGAGGGTGCTGCTCCAGCTCCAGCCGAAGGAGCTGCGCCCGCTGCTGAGGGTGAAGC---------------------TGCACCAGCT------------GCTGAAGCCGCTCCTGCTGAGGCTGCTCCTGCTGCCGAAGCAGCTCCGGCTGCT---------GAA---------------GCTGCTCCTGCTGCTGAGGCTGCTCCTGCTGCCGA
droAna3	scaffold_13250:122500-122645 -	GAGGGAGCTGCTC------CGGCTGAAGGTGCCGCTCC---ACCAG---------------------CTGAGGGAGAGGCAGCCGCCCCCG---CAGAGGCTGCTCCGGCT------------GCCGATGCTGCACCTGCTC---CGGAGGC------------------TGCT------------------------CCGGAAGCTGCTCCCGCCGCCGAGGCAG---CCCCCGCTGA
droBip1	scf7180000396413:676510-676658 -	GAGGGAGCTGCTCCGG---CTGCTGAAGGTGCCGCTCC---ACCAG---------------------CTGAGGGAGAAGCTGCTGCGCCCG---CAGAGGCTGCCCCGGCT------------GCCGAGGG---------CG---AGGCACC------------------TGCTCCAGAGGCCGCGGAG---------------GCTGCTCCCGCCGCCGAGGCAG---CCCCTGCCGA
dp5	2:28060641-28060807 +	GAAGGAGCTGCTCCGG---CGGCTGAGGGAGCTGCACC---CGCTG---------------------CCGAGGCTGC---TCCTGCTGCTG---AGGCTGCGCCTGCTGCT------------GCTGAGGCTGCACCTGC---------------CGCCGAAGCTGCACCCGCTGCC---------GAGGCTGCCCCTGCCGCCGAGGCTGCTCCCGCCGAAGCAC---CACCAGCCTA
droPer2	scaffold_6:3387346-3387512 +	GAAGGAGCTGCTCCGG---CGGCTGAGGGAGCTGCACC---CGCTG---------------------CCGAGGCTGC---TCCTGCTGCTG---AGGCTGCGCCTGCTGCT------------GCTGAGGCTGCACCTGC---------------CGCCGAAGCTGCACCCGCTGCC---------GAGGCTGCCCCTGCCGCCGAGGCTGCTCCCGCCGAAGCAC---CACCAGCCTA
droWil2	scf2_1100000004943:3671770-3671939 +	GAAGGAGCTCCTGCTCCACCAGCTGAGGGAGCTGCTCCGCCACCAG---------------------CTGAAGCGGAAGCACCACCCGCTGCTTCTGAACCTGCCCCTGCA------------GCTGAGGCTGCCCCAGCAG---CAGAAGG------------------AGAAGCT---------GCACCAC---CCGCTGAGGAGGCACCACCTGCAGAGGCTG---CTCCTGCTGA
droVir3	scaffold_13047:7828505-7828650 -	GAAGGTGCCGCACCAC---CGGCTGAAGGTGCAGCCCC---ACCAG---------------------CTGAGGCAGCTGCAGCACCACCGG---CTGACGGTGCTGCGCCCGCG---------GCTGAAGCTGCT------------GCTCC------------------ACCAGCG------GAAGAA---------------GCAGCGCCACCAGCTGAGGCGC---CAGCCGCCGA
droMoj3	scaffold_6540:15549815-15549972 -	GAAGGTGCGGCTCCAC---CGGCCGAGGGTGCAGCGCC---ACCAG---------------------CTGACGCTGCTGCACCATCAGCTG---AAGGGGCTGCGCCAGCG------------GCCGAA---GCACCAGCTG---CCCCCCC------------------GGCAGAA---------GAGGCTG---CACCGGCACCAGCTGCTGAAGCTGCTGCGC---CAGCTGCCGA

Generated: 02/13/2013 at 08:11 PM