dme-mir-990
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chr2R | 11518434 | T | 3 | 0 | 0 | 0 | 0 | 0 | 0.762 | 0 | 0 | 0.238 | 21 | Genomic Error | 3' MOR |
Corrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:12782713-12782828 - | TGGGAAAC------TGGCGAA---------TCTG------------CTCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----C------------TTTCAGCTTCGGTGCCATTT-CACCCCGA---GCACCAAGAG-----------------------------------------------------------------CATCAGA---------------------CT |
| droSim1 | chr2R:11518341-11518456 - | TGGGAAAC------TGGCGAA---------TCTG------------CTCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----C------------TTTCAGCTTCGGTGCCATTT-CACCCCGA---GCACCAAGAG-----------------------------------------------------------------CATCAGA---------------------CT |
| droSec1 | super_1:10286785-10286900 - | TGGGAAAC------TGGCGAA---------TCTG------------CTCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----C------------TTTCAGCTTCGGTGCCATTT-CACCCCGA---GCACCAAGAG-----------------------------------------------------------------TATCAGA---------------------CT |
| droYak2 | chr2R:16191830-16191945 + | TGGGAAAC------TGGCGAA---------TCTG------------CTCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----C------------TTTCAGTTTCGGTGCCATTT-CACCCCGA---ACAGCAAGAC-----------------------------------------------------------------CATCAGA---------------------CT |
| droEre2 | scaffold_4845:13064860-13064974 + | TGGGTAAC------TGGCGAG---------TCTG------------CTCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCAG----C------------TTTCAGTTTCGGTGCCATTT-CACCCCCA---GCACCAAGAG-----------------------------------------------------------------CA-CCGA---------------------CT |
| droAna3 | scaffold_13266:13815719-13815830 + | TGGGAAAT------TGTCGAA---------GCCA------------CTTTGC-GACATTCCCCGTTCTGCGTTGGCCCAAGGTGCACGTGGG-GCCGACGAC------------TCTCCGCTTCCGGACCCAT--------------TGCCGAAAA---------------------------------TACATTCT------------------------------T---------------------CA |
| dp4 | chr3:6727705-6727891 - | TGGGAAAC------TGGCGAG---------GCGA-GGCGAGGACTCCTCTGC-GACATTCACCGTTCAGCGTTCGGCCAGCGAGCACGTGGG-TTAC----GCCTGAAGCTCCAATTCGGTTACGGTTT------C---------------GGCTACGGCTACGGCTACGGGTACGGCTACGGCTACGGTACATCCTCCACACTAGACGGCGGGTTGAGGGGGTCGGA---------------------CA |
| droPer1 | super_2:6950668-6950854 - | TGGGAAAC------TGGCGAG---------GCGA-GGCGAGGACTCCTCTGC-GACATTCACCGTTCAGCGTTCGGCCAGCGAGCACGTGGG-TTAC----GCCTGAAGCTCCAATTCGGTTACGGTTT------C---------------GGCTACGGCTACGGCTACGGGTACGGCTACGGCTACGGTACATCCTCCACACTAGACGGCGGGTTGAGGGGGTCGGA---------------------CA |
| droWil1 | scaffold_180700:6478759-6478837 - | TGGGAAATACATCTTCGTTTGGCTTTAGTTTCTC------------TTCTGCGGACATTCAATGTTCTGCGTTTGCCCCAAGCGCACGTGG---------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | scaffold_12875:2573949-2574010 + | TGGGAAAC------TG-CGAA---------GCTG------------CTTTGC-GACATTCGACTTGCTGCGTTCGTCGCCGACGCACGTGG---------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | scaffold_6496:22657688-22657749 - | TGGGAAAC-------GGCGAA---------GCTT------------CTGTGC-GACATTCAACGTTCTGCGTTCGTCGCCGACGCACGTGG---------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droGri2 | scaffold_15112:4702153-4702224 + | TGGGAATT------TTGCGAA---------GCTGCTGCTGTGGCT--GCTGC-GACATTCAACGTTCTGCGTTGGCCGCCGACGCACGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------- |