dme-mir-989
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droGri2 | scaffold_15112 | 3992591 | C | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0.467 | 0 | 0.533 | 15 | Ambiguous - Suggested base change does not agree with neighboring species |
Loop |
| droSim1 | chr2R | 8799095 | T | 3 | 0 | 0 | 0 | 0 | 0 | 0.545 | 0.091 | 0 | 0.364 | 11 | Genomic Error | Loop |
| droSim1 | chr2R | 8799105 | T | 3 | 0 | 0 | 0 | 0 | 0 | 0.636 | 0 | 0.091 | 0.273 | 11 | Ambiguous - The two alleles agree with either melanogaster or sechellia. |
Loop |
Corrected Alignment:
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:10032841-10033044 - | ATT-T--------------------------T---AT--TTAAG-------TAC---AAAG-ATTTTGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACAGGTGA---CACTGATCCGGA-TTTGG-TAGTTG---AC------------------------------------------A------------------AATCCTCCA----------------TGCCG-----AGATTAG---------------T----TT-CATTTT----------------------GCGTCTTTTG----AATT-CGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTAC-AAGCAACACGAA---G--TGA---- |
| droSim1 | chr2R:8799008-8799211 - | ATT-T--------------------------T---AT--TTAAG-------TAC---ATAA-ATTCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACTGGTGA---CACTGATCCGGA-TTTGG-TAGTTG---AC------------------------------------------A------------------AATCCTCCA----------------TGCCG-----AGATTAG---------------T----TT-CATTTT----------------------GCGTCTTTTG----AATT-CGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTGC-AAGCAACACGAA---G--TGA---- |
| droSec1 | super_1:7540579-7540782 - | ATT-T--------------------------T---AT--TTAAG-------TAC---AGAA-ATTCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACTGGTGA---CACTGATCCGGA-TTTGG-TAGTTG---AC------------------------------------------A------------------AATCCTCCT----------------TGCCG-----AGATTAG---------------T----TT-CATTTT----------------------GCGTCTTTTG----AATT-CGAATAGTTCATGTGATGTGACGTAGTGGAACATACCCGAAATTGC-AAGCAGCACGAA---G--TGA---- |
| droYak2 | chr2R:9968911-9969114 - | TTT-T-------------------------TT---AT--TTAAT-------TAC---AAAG-ATGCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACAGGTGA---CACTGATCCGGA-TTTGG-TGGTGG---AC------------------------------------------C------------------CATTCT-CA----------------TTCCG-----AGATTAG---------------T----TT-TATTTT----------------------GCGTCTTTTG----AATT-CGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGC-AAGCAACATGGA---G--TAA---- |
| droEre2 | scaffold_4845:15804995-15805201 + | ATT-T--------------------------T---AT--TTAAT-------TAC---AAAG-ATGCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACCCAGGTGA---CACTGATCCGGA-TTTGG-TAGTCGT--AC------------------------------------------A------------------AATCCTCCA----------------TTCCG-----AGTTAAG---------------T----TT-CATTCT----------------------GCGTCTTTTG----AATT-CGAACAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGC-AAGCAACATGTA---G--GCATA-- |
| droAna3 | scaffold_13266:5886554-5886734 + | A----------------------------------------------------C---CAACG-TTTCGGGAAGTGGCCACTACCTCGCAGTCACGTGATGCC---AAAATGCAACTGA---CACTGATCCGGA-GATGG-T--------------CCT-CCATCCT--------------------------------------------------------------------------TG-----GGATTAG---------------T----GT-TAATTT----------------------GTGTTTTTTT----TATT-TGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTCC-TAACAACAAAAA---G--TGA---- |
| dp4 | chr3:2729279-2729420 - | A-----------------------------------------------------------CG-TTGCGGGAATGGGCCACTACCTCGCAGTCACGTGATATC---GGAAT----------------------------------------------------------------------------------------------------------------------------------------------------GCAATGATCTA-CGTT------------------A-AATT-------GTGTTTCTT-------TT-TGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGT-CAGCAACAGAAA----TGTAC---- |
| droPer1 | super_2:2918784-2918948 - | TTG-T--------------------------A---AA--CCAAGAAGAACC---AAACAACG-TTGCGGGAATGGGCCACTACCTCGCAGTCACGTGATATC---G----------------------------------------------------------------------------------------------------------------------------------------------------GAATGCAATGATCTAC----GT-TAAATT----------------------GTGTTTCTT-------TT-TGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGT-CAGCAACAGAAA----TGTAC---- |
| droWil1 | scaffold_180745:1541090-1541255 + | TAC-G--------------------------A---GT--TCGAG-------TACAATAAATG-TTTTGGGAATTGGCCACTACCTCGCAGTCACGTGATGAGA--GAGATGCAAGAG-------------------------------------------------------------------------------GACTTT--GTATGCCA--------------------------------------------------T--------------------------TT-------GCATTTA-----------A-T--A-TTTCATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGAGCTTTAAAGTCATCAAGAA---G--GAA---- |
| droVir3 | scaffold_12875:1889282-1889470 + | A-------------------------------------------------------AAAACG-ATTCGGGAATTGGCCACTACCTCGCAGTCACGTGATCCA---CAAACGCAGCCGG---CTCTGG-------------TGC----------------------TTGGGAAAAATACAATTT-------------TCTTTT--GTTTTCCT-----------------------------GGGCGC-----C-----GC--------------AA-CGTTTT---------------GCGTTCA------------------TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTG-CAGCCACAGCGCGAAG--TG----- |
| droMoj3 | scaffold_6496:23382296-23382464 - | A-------------------------------------------------------AAAACG-ATTCGGGAATTGGCCACTACCTCGCACTCACGTGATGCACTCAAAACGCCGACGAGGA------------C-----G------TCC-----------------------AAATTCCATTT-------------TC----TCGTTTT---------------------------------------------------------------------CCTCTGTCGTTTT-------GCGT-----------TG----A---TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGC-C----CCAGCAA----T-----CCG |
| droGri2 | scaffold_15112:3992495-3992691 + | ATG-TAATGAA---------------------------------------------AAAGCG-TTCCGGGAATTGGCCACTACCTCGCAGTCACGTGATGCC---ACAAGGCGGGC-ACGC------------C-----G------TGC-----------------------AACATCC-TCTCTTCGTTTACA------------------CATCTCCTC----------------TTGAG-----AGGATT-----GC--------------GT-CGTTCC---------------GCCT-----------TG----AA--TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTC-CCACAACAAGAA---C--AAC---- |