dme-mir-972

Species Chrom Pos Ref base Type A C G T RNAseq Total A C G T Trace Total Decision Partition
droSim1chrX15010939G3000000.57900.421019 Ambiguous - The two alleles agree with either melanogaster or sechellia.
5' flanking region

Uncorrected alignment

dme-mir-972

Species Coordinate Alignment
dm3 chrX:19445170-19445290 + TGCAAATAGCTAAA--GAGAATG-------ATAGGGAA-------ATTGC--TAAATATTTTTTTTGTAT-----------------------------AAATAACTTTT---AACTTTTGTACAATACG-AATATTTAGGCATTTCTC----------------------------------------------------------------------------------------AAATCAA-------------AGA--TTTGC--AAGCCAAA
droSim1 chrX:15010925-15011057 + ATAAAAAAGCTGAA--GAGAATG-------ATAGTGA--------ATTGC--TAAATATTTTCTTTGTAT-----------------------------AAATGACTTTT---AACATTTGTACAATATT-AATATTTAAACATTTCTC----------------------------------------------------------------------------------------GAATCAAAGTATGCCACATCAGC--TTTGC--AAGCCAAA
droSec1 super_8:1727594-1727726 + ATAAAAAAGCTGAA--AAGAATG-------ATAGTGA--------ATTGC--TAAATATTTTCTTTGTAT-----------------------------AAATAACTTTT---AATATTTGTACAATATT-AATATTTAAACATTTCTC----------------------------------------------------------------------------------------GAATCAAAGTATGCGACATCAGC--TTTGC--AAGCCAAA
droYak2 Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:9681872-9682038 + TGA-AATAGCTGAA--TATAATG-------CTAGTGAA-------ATTGT--TAAATATTTACTTTGTAT-----------------------------AAATGACCTTCATAAACATTTATACAATTTCAAATATTTTGCCATTTCTCAATCCAAT----------------------------------TCA-----------ATTTTGCCACACAGAAGTGTCCAAAA-------------AGTATGCTACATCATA--TTTGC--AATCCAGA
droAna3 Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp4 Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1 Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 scaffold_181096:7946002-7946145 + CTTAAATATTCGAA--ACGTGTA-------CTAAGAT--------TCTAC--TTCTTGCTAGCTTATTTTGTAAACTAATGAATAATTAAATGACAATG-----AAAA----------------------CGAAGTAAATTAGTTAATTAAGACAG---------------------------------------------------------------------------CTGCTTAA------------CATATAAAATAATTGAAAATATTCAA
droVir3 scaffold_13042:918660-918775 - CTGAAAGAACTATA--GATATTA-------TTAATAAT---AGGAACTGCTTCAGATATTTTGTTTGCAG-----------------------------T---G--TCTT---AGCTTTTGTTTTAT--G-ATGTTTTATATATTCCGA----------------------------------------------------------------------------------------ATATTAA-------------AGC--TTCA------AAAAA
droMoj3 Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------