dme-mir-970

dme-mir-970

Changes

All the miR* substitutions in the pseudobscura through grimshawi are supported by trace reads.

Species

Chrom

Pos

Ref base

Type

A

C

G

T

RNAseq Total

A

C

G

T

Trace Total

Decision

Partition

droSim1

chrX_random

3444250

T

3

0

0

0

0

0

0.769

0

0

0.231

13

Genomic Error

5' MOR

Corrected Alignment

dme-mir-970

Species	Coordinate	Alignment
dm3	chrX:12530354-12530478 +	AAAG-TGCCCAT-------------------AATCGAAAGGCATCTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGTAA-TG--ATTTG---AATCTATCATAAGACACACGCGGCTATAACCGTT--GTCT--AAGAGCTTCAA-----------A---------------ATCGAT
droSim1	chrX_random:3444234-3444357 +	AAAG-TGAACGT-------------------AATCGAAAGGCATCTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGAAT-TG--ATTTG---AATCTATCATAAGACACACGCGGCTATAACCGAT--GTCT--AAATGCTTCAA-----------A----------------TCGAC
droSec1	super_21:285079-285202 +	AAAG-TGAACGT-------------------AATCGAAAGGCATCTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGAAT-TG--ATTTG---AATCTATCATAAGACACACGCGGCTATAACCGAT--GTCT--AAATGCTTCAA-----------A----------------ATGAT
droYak2	chrX:6807144-6807273 +	ATAG-TGCATTT-------------------AATCGAAAGGCATCTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGTAA-TG--ATTTG---AATCTATCATAAGACACACGCGGCTATAACCGAT--GTCA--CACA--TGCGACACACACA-------------T------TAGAT
droEre2	scaffold_4690:14328958-14329082 -	AAAG-TGCCTTA-------------------ATC-GAAAGGCATCCGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGTAA-TG--ATTTG---AATCTATCATAAGACACACGCGGCTATAACCGAT--GTCT--AAACGCTTCAA-----------AGT--------------GCAAT
droAna3	scaffold_13117:3438231-3438350 +	TTAG-TGGAA-------------------------GAAAGGCATTTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGATA-TC--GAAAG---AATCTATCATAAGACACACGCGGCTATAATCGAT--GTCCTTAGAGTCTACAA---------------------------GCTAAA
dp4	chrXL_group1a:3316403-3316556 +	ATCA-CCCCA--AAAAGTGAGCAGACATCG--CGA-CATGGCATCTGTTGCAGCTAGCGGGTGTTTTATCTGGTAGCTGTAC-CC--TTTTG---AATCTATCATAAGACACACGCGGCTATGACCGAT--GCCC--AAACCATCCAA-----------GATTCAATAATTAGTAATCAAT
droPer1	super_77:191839-191992 -	ATCA-CCCCA--AAAAGTGAGCAGACATCG--CGA-CATGGCATCTGTTGCAGCTAGCGGGTGTTTTATCTGGTAGCTGTAC-CC--TTTTG---AATCTATCATAAGACACACGCGGCTATGACCGAT--GCCC--AAACCATCCAA-----------GATTCAATAATTAGTAATCAAT
droWil1	scaffold_181096:1892772-1892900 +	AGAG-TGTAC------------A---ATCGTATTC--AGGGCATTTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGCAC-TAAAATTTCAATAATCTATCATAAGACACACGCGGCTATGACCGAT--GTCT--T------TC-----------------------TTAGCCAACAAT
droVir3	scaffold_13042:2658865-2658967 +	---------------------------------------GACGTCTGTTGTAGCCAGCGGATGTTTTATTTGGTAGTTGCGC-TT--TATTA---AATCTATCATAAGACACACGCGGCTATAACAGTGCCGTTC--AACA--AGCAAC-----------------------------GTC
droMoj3	scaffold_6328:939989-940116 -	TAAA-CCCCAGT------GATCGACTATGA-AAACAATTGACGTCTGTTGTAGCCAGCGGATGTTTTATTTGGTAGTTGTAT-TT--TATAA---AGTCTATCATAAGACACACGCGGCTATAACAGAACTGTTC--AATA-------------------------------------AGC
droGri2	scaffold_15203:5475247-5475378 +	AAAG-TCTGCCC-------------------AAAAAATTGACGTCTGTTGTAGCCTGCGTATGTTTTATTTGGTAGTTGTAACTAA-AATCG---AATCTATCATAAGACACACGCGGCTATCACAGTTCCGTTC--AACA--ATCAACGTAC-CA--------------------TTACA