dme-mir-961

No changes

This miRNA belongs to the 959-964 cluster
This miRNA appears confidently lost from the 3 Drosophila group species.
- The D. virilis ortholog could not be found by searching D. virilus trace data nor the D. virilus assembly.
- The mojavensis and grimshawi orthologs look questionable based on substitution patterns within the mature and star regions.
- It should be noted that the adjacent miRNA in this cluster, dme-mir-960, has confident mojavensis and grimshawi ortholog but missing virilis ortholog.

dme-mir-961

Species	Coordinate	Alignment
dm3	chr2L:5641176-5641294 +	GTAGTGAGCTCGT--TAT----------CAA-GGGCC---GAGTTACCTTTGAT--CACCAGTAACTGAGATTG--T-T-TCTGA----TACGGTTTCGTTTTCTGGCAATCA-AAAGAACTTGGACTCGA---CTTG------------------------A--------------------------------ATT--CAACTAC
droSim1	chr2L:5434262-5434381 +	GTAATGTGCTCGT--TAT----------CAT-GGGCC---GAGTTACCTTTGAT--CATCAGTAAGTGAGATTG--T-T-TCTGA----TACGATTTCGTTTTCTGGCAATCA-AAGGAACTCGACTCG-A---CTTG------------------------A--------------------------------ATCTACAACTAC
droSec1	super_5:3718917-3719036 +	GTAATGTACTCTT--TAT----------CAA-GGCCC---GAGTTACCTTTGAT--CACCAGTAAGTGAGATTG--T-T-TCTGA----TACGATTTCGTTTTCTGGCAATCA-AAGGAACTCGACTCG-A---CTTG------------------------A--------------------------------ATCTACAACTAC
droYak2	chr2L:13552021-13552135 -	GAAAAT----CTA--ATT----------CAT-GGGTC---GAGTTACCATTGAT--CACCGGTTACTGAGGTTG--T-T-CCTTC----TTTGGCTTCGTTTTCTGGCGATCA-AAAGAACTCGACTCG-A---CTCG------------------------A--------------------------------ATC--CAACCAA
droEre2	scaffold_4929:5729649-5729755 +	TGA---------T----T----------CAT-GGGTC---GAGTTACCATTGAT--CACCGGTTACTGAGGTTG--T-G-CCACA----TTCGGCTTCGTTTCCTGGCGATCA-AAAGAACTCGACTCG-G---CTCG------------------------A--------------------------------ATC--CCAGTAC
droAna3	scaffold_12916:11084979-11085099 +	ACAAAGGACTACAGG--AAA--GCGAC-TT-AAGTCC---GAGCACTATTTGAT--CACTGGTTACTGAGGTTG--T-T-TTGTC----ATAAGCTTCGTTTTCTGGCGATCA-AATACGCTCGACTTT-GG---------------------------------------------------------------GCC--CAACCAC
dp4	chr4_group4:3182338-3182458 -	GAGGAGAGCTGTT--TCGCC----G--G-AC-AGTCA---GAGTTTGATTTGAT--CTCTAGTTACTGGGCTTT--GAT--TCGAAATAAGTAGCTTATTATTCTAGTGATTGAAATGAACTCGACTCG-A----------------------------------------------------------------GTG--CCACAAA
droPer1	super_10:2201269-2201389 -	GAGGAGAGCTGTT--TCGCC----G--G-AC-AGTCA---GAGTTTGAGTTGAT--CTCTAGTTACTGGGCTTT--GAT--TCGAAATAAGTAGCTTATTATTCTAGTGATTGAAATGAACTCGACTCG-A----------------------------------------------------------------GTG--CCACAAA
droWil1	scaffold_180708:8625990-8626125 -	GTGTGAAAC--------------------TTGAGTTT---GAGTTTACATTGAT--CACTGGTTAGTGAGGTTCAAA-G-TCAGA----CCCAACTTCGTTATCTGGCGATCA-AATAAACCTGGCTTA-CAA-AAGCTATAATTGCTGAAATGGATACACGT-------------------------------------TTTCTAT
droVir3	scaffold_12963:3615378-3615429 +	G---------------------------------------------------------------------------------------------TTTCATTTTTCAGTGAATT-AAACAACTCAATTTA-CA--CACA------------------------C--------------------------------ACA--CACACAT
droMoj3	scaffold_6500:14018312-14018360 +	ATTTAAATGTAT------------------------------------TCCGGT--CTATGGCGTTTACGGTC-----------------------------------GTTTT-GTCGTACTC------------------------------------------------------------------------------------
droGri2	scaffold_15252:3147112-3147237 +	GTTGTTAGCAGCCAC--ATC--TCTGA-ATT-GAATT---GGATTCGTTTTACTTTCTTTTATTACTGAAATGA--G-T-TGTTC--------------------------------------AGTTC--T---TTTA------------------------AATTTCAGTCTACAAACTAAGAGCAGGTTACTTTCA--TAACACA