dme-mir-960

No changes

This miRNA belongs to the 959-964 cluster
This miRNA appears confidently lost within D. virilis alone.
- The D. virilis ortholog could not be found by searching D. virilis trace data nor the D. virilis assembly.
- The D. virilis ortholog does look confident because several, long trace reads span the supposed location where this cluster should reside within D. virilis:
- It should be noted that the adjacent miRNAs in this cluster, dme-mir-959 and dme-mir-961, have confidently lost D. virilis orthologs as well.

Uncorrected

dme-mir-960

Species	Coordinate	Alignment
dm3	chr2L:5641048-5641170 +	TATCG--------------------------------T-------ACCGCCCACGG---------------------GTTTTGTACCACATTCTGAGTATTCCAGATTG-CATAGCTTTGTG--------CTACTATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAAATCA-GATTCA--CCTAATA----------------------G
droSim1	chr2L:5434134-5434256 +	CATCG--------------------------------T-------CACGCCCACGG---------------------GTTTTGTACCACATTCAGAGTATTCCAGGTTG-CATAGCTTTGTG--------CTACTATTGCTGTACGATCTGGGACACTTTTAACATGGTATCAAATCT-GATTCC--CCCAAAC----------------------G
droSec1	super_5:3718789-3718911 +	CATCG--------------------------------T-------ACCGCCCACGG---------------------GTTTTGTACCACATTCTGAGTATTCCAGATTG-CATAGCTTTGTG--------CTACTATTGCTGTACGATCTGGGAGACTTTTAACATGGTATCAAATCT-GATTCC--CCCAAAG----------------------G
droYak2	chr2L:13552137-13552259 -	CATCG--------------------------------C-------TTCGCCCGCGT---------------------GTTTTGTACCAGATTCTGAGTATTCCTGATTG-CATAGCTTTGGC--------CTTTGATTGCTATACGGTCTGGGACACTTTTAACGTGGTATCAAATCT-GATTCA--ACCGAAG----------------------G
droEre2	scaffold_4929:5729522-5729643 +	CAACG--------------------------------C-------ACCGCCCGCGT---------------------TTTTTGTGCCAGATTCAGAGTATTCCAGATTG-CATAGCTTTGGG--------CTTTGATTGCTATACGGTCTGGGACACTTTAAACGTGGCATCAA-TCC-TATTCA--ACTGATG----------------------G
droAna3	scaffold_12916:11084824-11084972 +	TATCGGCCAATAGGCCAATTAACCCGGACCAATCAA---------------TATGA---------------------GTTTTGTGCCAGATTCTGAGTATTCCTGATTG-CATAGCTCTGTG--------TTGTGACTGCTATACGGTCTGGGACACTTCTAACATGGCATCAAATCT-GTGTCA--ACGGCAGC--------------------AG
dp4	chr4_group4:3182464-3182586 -	TGTGG--------------------------------GTGT----GCGTGTGTGCG---------------------GGTGTGTGCTATATTCTGAGTATTGCCTCCTGTTGTAGTTGTGGAATATTGAAAT--ATCAACTATACGGTTCGGAATCCTCTAAATATGGCAGCCA-------------CTAAAGA----------------------C
droPer1	super_10:2201395-2201525 -	TATAC------------------------ACGTAAATGTGT----GTGGGTGTGCG---------------------GGTGTGTTCTATATTCTGAGTATTGCCTCCTGTTGTAGTTGTGGAATATTGAAAT--ATCAACTATACGGTTCGGAATCCTCTAAATATGGCAGCCA-------------CTAAAGA----------------------C
droWil1	scaffold_180708:8626131-8626297 -	TAAGA--------------------------------A-------T-TAACTTTGAATTGGAAACGATATTGAAATGAATTTATGCTAAATTCTGAGTATTCCTGATTG-CATAGTGTGTAT--------TTGATACTACTATACGGTCGGGGAAACTTTTAACATGGCCCAAATGAT-AAATGACAGTGACAATGAAAAAGAAAATACCAAAACAG
droVir3	Unknown	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6500:14018206-14018306 +	TAA---------------------------------------------------------------------------------GTCATGCTTTGAGTATTCCTTATTG-CATAGTTTAC----------ATATAATTACTATACAGTCTGGAGCACTTAAAGTTGGGCATAGACAACCGAACAA--CTTAGGA----------------------G
droGri2	scaffold_15252:3146997-3147109 +	TGTTG--------------------------------A-------T-TGGCCTTGG------------------------TTATGCTAAATTCCAAGTATTCCTTATTG-CATAGTTTATAA--------T--TGAATACTATACAATCTGGCGTTCTTAGAATTTGTCATAAGACTT-CA------CATAACA----------------------A