dme-mir-955

dme-mir-955

The miRNA may be lost in the obscura species. Genome assembly and trace data searches for a better ortholog were unsuccessful.
Changes

Species	Chrom	Pos	Ref base	Type	A	C	G	T	RNAseq Total	A	C	G	T	Trace Total	Decision	Partition
droSim1	chr3L	2834569	T	3	0	0	0	0	0	0.526	0	0	0.474	19	Valid - Genomic Error	5' MOR
droSim1	chr3L	2834682	G	3	0	0	0	0	0	0.357	0.214	0.429	0	14	Valid - Genomic Error	3' MOR

Corrected alignment

dme-mir-955

Species	Coordinate	Alignment
dm3	chr3L:3299040-3299166 +	TAAGGA--ACACTTT-----T-TGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTA------------------------------------AAA----------------------------------------------CAATT
droSim1	chr3L:2834561-2834687 +	TAAAGA--ACACTTT-----T-TGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCACGGTAGAGATGGTA-CGCTTAGAAACAACCTA------------------------------------AAA----------------------------------------------AAATT
droSec1	super_2:3291343-3291466 +	TAATAA--ACACTTT-----T-TGGTCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCAG---AGAGATGGTA-CGCTTAGAAACAACCTA------------------------------------CAA----------------------------------------------AAATT
droYak2	chr3L:3844747-3844864 +	TAAAGT-----------------AAACAGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTA------------------------------------AAA----------------------------------------------TGAGT
droEre2	scaffold_4784:5981989-5982116 +	AAGGAA--TACACTT-----T-TGTCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTA------------------------------------AAG----------------------------------------------CAAGT
droAna3	scaffold_13337:7606422-7606539 +	TGAAGG--ATGTTTT-----T-TGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAAT---TT-TTAACCAT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAGAAAGCAACCTA------------------------------------------------------------------------------------------
dp4	chr4_group1:2379981-2380081 +	AAT-----------------T-TAAAAAAATGAATAAATTCAAATGACAAAAATGTAAATGAATTAA-----------AAA-ATAAATTCAAATGATAAAAAGTAAA-----TG-AATAAAAAAATAAAGTA-------------------------------------------------------------------------------------AAATT
droPer1	Unknown	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1	scaffold_180698:10215726-10215851 +	ATTCAA--ATACTTTTGCG-T---TAAGGTTGGCTGGCTCCATCGTGCTTAGGTTTGAGTGTCTTCGTTTGTTTTCTCTAA-TGGCATTCAACCTTGGAGCGATAGAGACGGCC-AATCGAGAAACAGCCTA------------------------------------AA----------------------------------------------------
droVir3	scaffold_12758:855562-855687 -	TATGTA--TGGATCT-----C-TCATCAGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTT-TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTA------------------------------------AAC----------------------------------------------TAATA
droMoj3	scaffold_6680:1909563-1909732 -	TCAGGT--ATCCAAT-----A-TG---GGTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTT-TGT---GTT-TGGCTAG-TCGCATTCAGCCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAACTGAA-------------------------------AG---CGAATCAAGGGAACTAGGCCAATAGGCGAGAATCATATAGAAATAGTT
droGri2	scaffold_15110:657067-657177 +	TAAAG-----------------------GTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTC-TGA---GT-TTGCCAAG-TGGCATTCAGCCCCTGGACGCTAGAGATGGCC-AACTGAAAAGCAACCTA------------------------------------AAAA---------------------------------------------CAATC