dme-mir-954
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chrU | 391207 | A | 3 | 0 | 0 | 0 | 0 | 0 | 0.222 | 0.778 | 0 | 0 | 9 | Genomic Error | 3' MOR |
Corrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr4:646737-646853 + | GACTCATGC---------ACG-TC-TT--AC--------------------------------------------------------------------------AAACACAAG-----------------------ATTTTCTGGGTGT--------TGCGTTGTG-------T-------GTACCTGTGTACAGGCGTATTCACATGCAA--------CATCCCTTACATCTTGC-------------------TTG-----------------------ATTATACT--------------CCGCCCGCC |
| droSim1 | chrU:391095-391211 + | GACGCATGC---------ACG-TC-TT--AC--------------------------------------------------------------------------AAACACAAG-----------------------AATTTCTGCGCGT--------AGAGTTTTG-------T-------GTACATGTGTACGTGCGTATTCACATCCAA--------CATCCCTGACGTCTTGC-------------------TTG-----------------------ATTATACT--------------CCGCCCGCC |
| droSec1 | super_30:369242-369358 + | GACGCATGC---------ACG-TC-TT--AC--------------------------------------------------------------------------AAACACAAG-----------------------AATTTCTGCGCGT--------AGAGTTTTG-------T-------GTACATGTGTACGTGCGTATTTACATCCAA--------CATCCCTGACGTCTTGC-------------------TTG-----------------------ATTATACT--------------CCGCCCGCC |
| droYak2 | chr4:700584-700681 + | GACTCATGC---------ACG-TCTTT--AC--------------------------------------------------------------------------AAACACAAG-----------------------ATATTCTACGCGT--------TGTGTTTTG-------T-------GTAC--------------------ATGCAA--------CATCCCTGACGTCTTGC-------------------GCG-----------------------ATTATACT--------------CTGCCCGTC |
| droEre2 | scaffold_4512:633126-633238 - | GAGACATGC---------ACG-TCTTT--AC--------------------------------------------------------------------------AAACACAAG-----------------------ATATTCTGCGCGT--------TGTGTTTTGACATGTAT-------GTAC--------------------ATGCAACCGTTATGCGTTCCAAGGACCCTAT-------------------TAG-----------------------ATCGGAAC--------------ACGGTCAGT |
| droAna3 | scaffold_13337:22987804-22987813 + | TCCGCCCGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T |
| dp4 | chrXR_group8:8504771-8504835 + | CTT--------------------------AC--------------------------------------------------------------------------AAATTCTAG-----------------------AATTTCTGTCTGTCTGTCTGTCTGTTTTTG-------T-------GTGTGTATGTGTGTGTGT---------------------------------------------------------------------------------------------------------------GC |
| droPer1 | super_150:7787-7872 - | AATGCATAC---------ACG-AT-AT--AC--------------------------------------------------------------------------ATACATATG-----------------------TGTGTGTGTGTGT--------GTGTGTGTG-------T-------GTGTGTGTGTGTGT----------GTGTAG--------ACGTATGTGTAT-----------------------------------------------------G------------------------TGA |
| droWil1 | scaffold_181130:1758155-1758267 + | CACTTTTGT---------GCT-GC-GT--GT--------------------------------------------------------------------------GAGT----G-----------------------TGTGTGTGTGAGT--------TTAAGTGTG-------T-------GTATGTGCGAACATACGAATTTAGATAAAG--------ATTCGTATACACATGAC-------------------ATT-----------------------CGCATACT--------------CACACCTAC |
| droVir3 | scaffold_13049:11239836-11239930 - | TACATACGC---------ACA-----T--AC--------------------------------------------------------------------------ATACATAGG-----------------------TGTTCGTATGT------------------A-------T-------GTACGTATGTAGGTGTG--CT-----------------------ATA---------------CACCCGTCAAAA-GAGCTAATTTCCTTTCTTG------GTTA--------------------------T |
| droMoj3 | scaffold_6500:15364731-15364841 + | GGGTCAGGC---------AAA-TTCGAATGTGAATTCAAAATAC-------------------------------------------------------------ATACATACA-----------------------TATGTACATGT-------------ATTGTG-------T-------GTGCAAGTGTACATGTGTGCTCACATGCAA--------ACTCACTTACATAATGT-------------------AT------------------------------------------------------G |
| droGri2 | scaffold_14822:646607-646724 + | AACAAATGC---------AGC-GC-AT--GT---T---------TTGATTCAC----------------------------------------------------AAGCCTGAA-----------------------CATATCCTAGCAT--------ATCGTT----------G-------GTAACGGGGCTCTGCAGAATACACACACAA--------ACATATTGATGCTCGCG-------------------TTG-----------------------ATTAT--------------------CATGCC |