dme-mir-927

dme-mir-927

Changes

The single 'G' substitution in the miR* region of D. ananassae is supported by 9 of the 11 trace reads. Two reads suggest an 'A' base.

Species

Chrom

Pos

Ref base

Type

A

C

G

T

RNAseq Total

A

C

G

T

Trace Total

Decision

Partition

droSim1

chrX

12269519

T

3

0

0

0

0

0

0

0.611

0

0.389

18

Genomic Error

3' MOR

Corrected Alignment:

dme-mir-927

Species	Coordinate	Alignment
dm3	chrX:15859965-15860086 -	GGCA----ATATTAAAT---------------------TGTGGTTGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCAT--------GTTAAAA-----AAA----A
droSim1	chrX:12269402-12269519 -	GGCC----ATATTAAAT---------------------TGTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCAT--------GTTATTA-------------
droSec1	super_37:439539-439656 -	GGCA----ATATTAAAT---------------------TGTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCAT--------GTTATTA-------------
droYak2	chrX:10049094-10049217 -	GGCA----GTTAAAAAT---------------------TGTGGGCGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTACCATTACCAT--ATTATT-------------A
droEre2	scaffold_4690:11188754-11188871 +	GGCA----ATAATAAAT---------------------TGTGGGTGCTGCAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCAT--------ATTATTA-------------
droAna3	scaffold_13250:3108664-3108783 +	TAAA----A-----------------------------AAAGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGCA-TATGAAATTAGGCAAAGCGTTTGGATTCTGGAACCCTATGTATTCATTTTTATAATGTGTTTTCA------T-AAA----T
dp4	Unknown_group_79:17437-17552 +	ATAG----ATAGA----------------------TAACGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGAGTCTGCATTCA-------------------ACAAA----A
droPer1	super_192:48564-48679 +	ATAG----ATAGA----------------------TAACGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGAGTCTGCATTCA-------------------ACAAA----A
droWil1	scaffold_180777:2521614-2521709 -	CACA----ATCTGACAT---------------------T--------GGTAGCGTTTTAGAATTCCTACGCTTTACCGTCGCC-TACGAAACTCGGCAAAGCGTTTGGATTCTGAAACATTATCTCTGCA-----------------------------------
droVir3	scaffold_12970:3343518-3343635 -	AACT----TTT---AAT---------------------AATGTCCATCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTG-TCCGAAATTTGGCAAAGCGTTTGGATTCTGAAACGATATATGGTCGGTAACA-------------------ACAAAAACAG
droMoj3	scaffold_6473:7790778-7790858 -	----------------------------------------TGGCCAGCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGCAATTTGGCAAAGCGTTTGGATTCTGAAACAATA-------------------------------------------
droGri2	scaffold_15203:10526906-10527015 +	GATA----GTAGTTTAC---------------------CGTGACTATTGTATTGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGAAATTTGGCAAAGCGTTTGGATTCTGAAACGGTATGTGGTCAGAA-------------------------AC----A