dme-mir-4984
Changes
>dme-mir-4984-dp4
TTAAAATAGTTGCAGCCCACAA-------GTCACATGCCGCCGCCGGCGCATTGGACATTGGAGGTGTGAAAACCAATATTCGCTTCAGGTCCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCTTGGCAAATGACACGTTTTGGACCTGCAATTTCCAGCATTTACTTTCATT
>gnl|ti|733036400:69-254
TTAAAATAGTTGCAGCCCACAAGTCACAAGTCACATGCCGCCGCCGGCGCATTGGACATTGGAGGTGTGAAAACCAATATTCGCTTCAGGTCCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCTTGGCAAATGACACGTTTTGGACCTGCAATTTCCAGCATTTACTTTCATT
Corrected alignment:
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:8141524-8141677 - | TTAAAATAGT-------------------------------------------CTCA----A------------------------CTTCGCTCGAGGTGTGAAAACC--------------------TTTTGGCCAGCGAA-----------------------------------------------------------TA-----------CG------CC--------TCGGAT-CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----GG-CCAAATGACACGTTCG--CCATGTTTTGCG--------------------------------------------------------GC-------------------------------------------------CAAGTGCTTTCATT-------------- |
| droSim1 | chr2L:7922185-7922338 - | TTAAAATAGT-------------------------------------------CTCC----A------------------------CTCCGCTCGAGGTGTGAAAACC--------------------TTTTGGCCAGCGAA-----------------------------------------------------------TG-----------CG------CC--------TCGGAT-CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----GG-CCAAATGACACGTTCG--CCATGTTTTGCG--------------------------------------------------------GC-------------------------------------------------CAAGTGCTTTCATT-------------- |
| droSec1 | super_3:3638638-3638791 - | TTAAAATAGT-------------------------------------------CTCC----A------------------------CTCCGCTCGAGGTGTGAAAACC--------------------TTTTGGCCAGCGAA-----------------------------------------------------------TA-----------CG------CC--------TCGGAT-CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----GG-CCAAATGACACGTTCG--CCATGTTTTGCG--------------------------------------------------------GC-------------------------------------------------CAAGTGCTTTCATT-------------- |
| droYak2 | chr2L:10772572-10772720 - | TTAAAATAGT-------------------------------------------CTCG----A-----------------------------GACGAGGTGTGAAAACC--------------------TTTTGGCCGGCAAA-----------------------------------------------------------TA-----------CG------CC--------TCGGAT-CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----GG-CCAAATGACACGTTTG--CCATGTTTTGCG--------------------------------------------------------GC-------------------------------------------------CATGTGCTTTCATT-------------- |
| droEre2 | scaffold_4929:17047208-17047355 - | TTAAAATAGT-------------------------------------------CTCT----A-----------------------------CTCGAGGTGTGAAAACC--------------------TTT-GGCCAGCAAA-----------------------------------------------------------TA-----------CG------CC--------TCGGAT-CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----GG-CCAAATGACACGTTTG--CCATGTTTTGCT--------------------------------------------------------GC-------------------------------------------------CATGTGCTTTCATT-------------- |
| droAna3 | scaffold_12916:9486383-9486598 - | TTTAAATAGT-------------------------------------------CTCT----C---------GA-------------GGGTCTTCGGGGTGTGAAAACC--------------------TTTCGGTTAGCCAGCCAGCG----------------------------------------------------A--GACACTTAACTCA------CTTCGTGGCT-----TCCAAATCACGTTTCAAGATCGAGGTAAATTCTTTGACGTATTCGCT-----GG-CGAAATGGCACGTCTG--ACATG-------GA---ATGGCATGGCATG-AG------ATGGGCATGGTATGGT-TGGTTGGTGCG-ACTAAATA----------------------------------------------ATGGTTTCATT-------------- |
| dp4 | chr4_group3:2877715-2877892 + | TTAAAATAGTTGCAGCCCACAA-------GTCACATGCCGCCGCCGGCGCAT-----TGGA-CA---------------------------TTGGAGGTGTGAAAACC--------------------A------------A-----------------------------------------------------------TA---------TTCG------CT--------TCAGGT-CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----TG-GCAAATGACACGTTTTGG-------------ACCT-------------------------------------------------------------------------------------------GCAATTTCCAGCATTTACTTTCATT-------------- |
| droPer1 | gnl|ti|733036400:69-254 + | TTAAAATAGTTGCAGCCCACAAGTCACAAGTCACATGCCGCCGCCGGCGCAT-----TGGA-CA---------------------------TTGGAGGTGTGAAAACC--------------------A------------A-----------------------------------------------------------TA---------TTCG------CT--------TCAGGT-CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----TG-GCAAATGACACGTTTTGG-------------ACCT-------------------------------------------------------------------------------------------GCAATTTCCAGCATTTACTTTCATT-------------- |
| droWil1 | scaffold_180703:2787401-2787579 - | TC-----------------------------------TCTCCACCAACATAATAT---GG-A-------------------------------CAAGGTGTTAAGGTCT-------------C-----TTTTGGATGGTAG----------------------------------------------TCA----------------------GT----------TGCTAG--TTAACT-CAAATCACGTTTCAAGATCGAGGTGAATTCTTTGA-ATACTGTCA-----AG-CGAAATGACACGTTT------TGTCTTA---ACCC---GCACCGGCCGG-CCCCCAC-------TT-----------------------ACAT---------------------------------------------AGATATTTTTAGT-------------- |
| droVir3 | scaffold_12963:13862249-13862454 + | TTAAAGCGGC-------------------------------------------TTCA----A-------------------------------CAAGGTGTTAAAATCG--------------CAAAG-----GC-------------C-------------------------------------------GTCACAGC----------------CACAGTCC--------ACAGTC-CGAATCACGTTTTAAGATCGAGGTGAATTCTT-AACACCGCCGCTTGCCCAG-CCAAATGGCACGTTTT--CAATGGG----------CTGG-------------------------------------------------------CAGCAGCCCCAAGCCCTCAGCCAGCTTCATCTGCAATTGCGACGACTTTCTTT----CTGGCCCAACGAAC |
| droMoj3 | scaffold_6500:5788118-5788309 - | TTGGAATACTTGA-----------------------------------------------A-CACTGGTTACAGCGGCTAC---AA-------CAAGGTGTTAAAAAC-AGAAAAAAGCGAACCA-AA----GGCCGGCAC----------------------------------------------ACAGC------------------CA----CACAGTCC--------ACAGTT-CGAATCACGTTTTAAGATCGAGGTGAATTCTTAC-TACCGACGCTCAGCCAG-CCAAATGGCACGTTTG--CCATGGCAT-CG--------------------------------------------------------CT-------------------------------------------------CAACAGCTTTAAGC-------------- |
| droGri2 | scaffold_15126:6028218-6028422 - | TTTGAATACTTGA-----------------------------------------------A-CACTGGTTACACCGACTTCAGCAA-------CTAGGTGTTAAAGCCA-------------CCA-AA----GG--------------C-------------------------------------------CTTGCAGA----------------CACAGTTC--------ACAGTC-CGAATCACGTTTTATGATCGAGGTGAATTCTTTGGTAGAGCCGCTTACCCAG-CCAAATGGCACGTTTG--CTAAGCATG-------------------------------------------------GACAGATCCC--------CAAGAGCCCCAAGCTCTAAGCCA-----------------------GTTCCATCATC-------------- |