dme-mir-4976
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chr2R | 1535712 | A | 3 | 0 | 0 | 0 | 0 | 0 | 0.3 | 0 | 0.7 | 0 | 10 | Genomic Error | 5' flanking region |
Corrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:2723022-2723155 - | ACATCATCGATTATTGTCGATGCCGGCGTT---TCCCG---CT------------------------------------------------------------------------------CCAGGCTGTCGTCCATGGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAAGGCGTCGTCTCGCTCCGC------GTCTGGTCC-ACG |
| droSim1 | chr2R:1535693-1535826 - | ACATCATCGATTATTGTCGATGCCGGCGTT---TCCCG---CT------------------------------------------------------------------------------CCAGGCTGTCGTCCATGGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAAGGCGTCGTCTCGCTCCGC------GTCTGGTCC-ACG |
| droSec1 | super_1:401443-401575 - | ACATCATCGATTATTGTCGATGCCGGCGTT---TCCCG---CT------------------------------------------------------------------------------CCAGGCTGTCGTCCATGGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAA-GCGTCGTCTCGCTTCGC------GTCTGGTCC-ACG |
| droYak2 | chr2L:15457678-15457811 - | ACATCATCGATTATTGTCGATGCCGGCGTT---TCCCG---CT------------------------------------------------------------------------------CCAGGCTGTCGTCCATTGAGTTTGTGTTGTCTGCATTCAGCTCGGTGGATGTCAGCCATCGGTGGAAGGCGTCGTCGCGCTCCGC------GTCTGGTCC-ACG |
| droEre2 | scaffold_4929:19824507-19824640 + | ACATCATCGATTATGGTCGATGGCGGCGTC---TCCCG---CT------------------------------------------------------------------------------CCAGGCTGTCGTCCACGGAGTTCGTGTTGTCGGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAAGGCGTCGTCGCGCTCCGC------GTCCGGTCC-ACG |
| droAna3 | scaffold_13266:9050244-9050380 - | ACATCATCGATTATTGTCGATGTTGGCGTT---TCCTG---CT------------------------------------------------------------------------------CCAAGTTATCGTCAAGCGGGTTTGTGTTGTCGCCATTTAGCTCCGTAGATGTCAGCCACCGGTGGAAGGCGTCATCCAGCTCCTC---GGGGTCATGTCC-ACT |
| dp4 | chr3:994566-994696 - | ACATCATCGATTATTGTCGATGCTGCTGTT---TCCTG---CT------------------------------------------------------------------------------CCGAGGCATCGTCCGGCGTGTTTGTGCTGTCAGCATTCAGCTCCGTCGATGTCAGCCACCGATGGAACGCATCATCCAGGTCCTT------GCCA---CC-GCT |
| droPer1 | super_2:1175582-1175712 - | ACATCATCGATTATTGTCGATGCTGCTGTT---TCCTG---CT------------------------------------------------------------------------------CCGAGGCATCGTCCGGCGTGTTTGTGCTGTCAGCATTCAGCTCCGTCGATGTCAGCCACCGATGGAACGCATCATCCAGGTCCTT------GCCA---CC-GCT |
| droWil1 | scaffold_180745:52392-52526 + | ACATCATCGATTATCGTTGATGCTGATGTTTTTTCCTG---CT------------------------------------------------------------------------------CCAAGCTAACGTCCAGTGTATTGGTATTTTCAACATTCAGCTCTGTGGATGTTAGCCAACGATGAAATGCATCATCATCTTGTTC---C--ATCATCTT----C |
| droVir3 | scaffold_12875:15675057-15675224 - | ACATCATCGATTATTGTTGATGCTGGCGTT---TCCTG---TTCGACAGCAACTGCTGCTGCTGCTGC---------------------------------------TGCCGCAGCTGCTGCCAAGCTATCGTCGAGCGTGTTTGTGCTGTCAACATTCAGTTCCGTCGATGTCAGCCAGCGATGAAATGCATCGTCAGCTTCCTC---AATT---------TCC |
| droMoj3 | scaffold_6496:8124753-8124946 + | ACATCATCGATTATTGTTGATGCTGGTGTT---TCCTGCTGCTGAACGGCAAgTGtTGgTGgTGgTggGtgGGgTggGGgTGtTGgTGgTGgTGgTTgTGgTTgTGgTTgTGgTGgTGgTGTCAAGCTATCGTCGAGCGTGTTTGTGCTGTCAACATTGAGTTCCGTCGATGTCAGCCAGCGATGAAATGCATCGTC---------------------------- |
| droGri2 | scaffold_15245:12478490-12478641 - | ACATCATCGATTATTGTTGATGCTGATGTT---TCCTG---CTCAATTGTAGCTTCTGCTGCAGCTGC---------------------------------------AGCTGCTGCTGCTGCCAAGTTATCGTCAAACATATTTGTACTGTCAATATTGAGTTCCGTCGATGTCAGCCAGCGATGAAATGCATCATC---------------------------- |