dme-mir-4973
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droGri2 | scaffold_15126 | 6330587 | G | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.273 | 0.727 | 11 | Genomic Error | Loop |
Corrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:20562282-20562463 + | GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGTTTG------------------------------------------------------------GA--CTGCTCCTCC-TCCAAC------T---------------------------A--CT----------------------------------AC------------TGCGGCCGCTGCT------GCTGCTGCTGCGG-----------------------C---TGCTGCATCCGC--CTGC--AACCT-GCAACA---------CTCACAC--------------------C-----------ACGGCAA----------------------------------------------------CAGAAGTAGACGCGTCGC- |
| droSim1 | chr2L:20133895-20134076 + | GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGTTTG------------------------------------------------------------GA--CTGCTCCTCC-TCCAGC------T---------------------------A--CT----------------------------------AC------------TGCGGCCGCTGCT------GCTGCTGCTGCGG-----------------------C---TGCTGCATGCGC--CTGC--AACCT-GCAACA---------CTCACAC--------------------C-----------ACGGCAA----------------------------------------------------CAGAAGTAGACGCGTCGC- |
| droSec1 | super_18:446156-446334 + | GGTCCTTGGGCCA-TCGCTGGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGTTTG------------------------------------------------------------GA--CTGCTCCTCC-TCCAGC------T---------------------------A--CT----------------------------------AC------------TGCGGCCGCTGCC------GCTGCTGCTGC-----------------------------GGCTGCATCCGC--CTGC--AACCT-GCAACA---------CTCACAC--------------------C-----------ACGGCAA----------------------------------------------------CAGAAGTAGACGCGTCGC- |
| droYak2 | chr2R:6918558-6918738 + | GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGTTTG------------------------------------------------------------GA--CTGCTCCTGC-TCCAAC------T---------------------------A--CT----------------------------------AC------------TGCGGCCG---CT------GCTGCTGCTGCGG-----------------------C---TGCTGCATCTGCATCTGC--AACCT-GCAACA---------CTCACAC--------------------C-----------ACGGCAA----------------------------------------------------CAGAAATAGACGCGTCGC- |
| droEre2 | scaffold_4845:3882318-3882503 - | GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGTTTG----------------------------------------------------GACGTTTGGA--CTGCGCCTCC-TCCAAC------T---------------------------A--CT----------------------------------AC------------TGCGGCCGCCGCT------GCTGCTGCTGCGG-----------------------C---TGCTGCAT------CTGC--AACCT-GCAACA---------CTCACAC--------------------C-----------ACGGCAA----------------------------------------------------CAGAAGTAGACGCGTCGC- |
| droAna3 | scaffold_13117:435722-435893 + | GGC-CTTGGTC---TCCATCTT-GGGGTAGCCGTAGGGAGC----GATGGCCTTGT-TGGTGAG-TTCCA--GG------------------------------------------------------------GG--CTTCTCTGGG-GCCATT------T---------------------------G--CT----------------------------------GCAGCTGCTGCTG------CTGCTGCT---------GCTGGTGTTG-----------------------C---TGCTGCTT------CTCCTCGGCGTCGCGTCG---------CTCGCGC--------------------A-----------GCTGCT------------------------------------------------------CGTAGTAGGGACGATGC- |
| dp4 | chr4_group3:7758140-7758314 - | GGTCCTTTCGCCAGGCGCTCGTTTCAGTCGTCGTTGCGTGTTGTAGGTGGActggtctgctctg-ctccgctct-------------------------------g----------------------------ct--ctgcc---------------------------------------------------------------------------------------------------------cagcact------gctGTTGCTC------------------------------CACTGCAT------CTCT--CTCCT-aca------------cacacacacacgc-a----cgcacaca-cacgcaagcacacaACAG----------------------------------------------------CAAAAAT-CTCGCGACGC- |
| droPer1 | super_1:9204247-9204421 - | GGTCCTTTCGCCAGGCGCTCGTTTCAGTCGTCGTTGCGTGTCGTAGGTGGACTGGTGCGGTCTG-ATCCGCTTT-------------------------------G----------------------------CT--CTGCC---------------------------------------------------------------------------------------------------------CAGCACT------GCTGTTGATC------------------------------CACTGCAT------CTCT--CTCCT-aca------------cacacacacacgc-a----cgcacaca-cacgcaagcacacaACAG----------------------------------------------------CAAAAAT-CTCGCGACGC- |
| droWil1 | scaffold_180708:1965385-1965667 + | GGTCCTTTCGCAA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGtggcctggtctggtctggcttggactggactggtctgAAGTTTTTGGCAAGTTTTTTTG----------------------------CT--CTGCC----------AC------T---------------------------G--CC---------ACAACCAGTGTTCTTCAA--CTAAtgc------------tgcttctactgct------aaagctgctgctg-----------------------c---tgctgcAT------CTTC---ACCT-GCA------------CACATAGCCACGTCGACTC--------G---TCGGGGTCACCAAGGA-AAAAATCAACGAAAAATAAT------AA---TAACTGCTAAAAATGAAAGAAAAAAGAGTCTCGTCGC- |
| droVir3 | scaffold_12963:13534067-13534330 - | GGTCCTTTCGCAA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGTCTGGTCTGCTCTG-TGCTGGTCT------------------------------------------------------------G-CGCTGCTGCCCA----GATTTTTGCTGCC-ACTGGCACACACTGATTGGGATGCCTctgccgctgctgccgttgctgtcgagccgac-----gttgctgctgattttgctgttgctgtt------gctgttgctgttg-----------------------c---tgctACAT------CT-----------------------------------------------------TCC---------------GCAATG----ACGACGACCAACCC---AAA---CTTCTGTTTCAATTG----CCGTACGCGACGCGACGC- |
| droMoj3 | scaffold_6500:24644505-24644771 + | GGTCCTTTCGCAA-TCGCTCGT-TCAGTCGTCgttgcgtgttgtaggtggtctggtctgctctg-gtctggcct------------------------------------------------------------g-cgctgctgttcagcctactttttgatgcc-actgccacacactgatggtgatgccttcgctgctgct-------------------------gctgctgctgctt------ctgttgct------gctgccgtcgttg---ctgt-cgtcgctgc-tattgc---tgcCACAT------CT-----------------------------------------------------TCT---------------ACAACGACCGACGACGACCAACCC---AAACTGCTTCTGTTTCAATTG----CCGTACGCGACGCGACGC- |
| droGri2 | scaffold_15126:6330398-6330651 + | GGTCCTTTCGCAA-TCGTTCGT-TCAGTCGTCGTTGCGTGTTGTAGGtggtctggtctgctctg-gtctggtct------------------------------------------------------------A-CGCAGCTGCTCC-CCAAACTTTTGCTGTCTGCTGA-----ACTGAATGTAATGGCTctgctgat----------------------------gc------------tgatgccgccgat------gccgctgatgccgctgctgcCCATCGCTGCCCAATGC---AGCCACAT------CT-----------------------------------------------------TCG---------------ACAATG----ACGACGACTAACCCACCAAA---CTTCTGTTTCAATTG----CTATACGCGACGCGACGC- |