dme-mir-4970
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chr2L | 10541300 | T | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.7 | 0.3 | 10 | Genomic Error | 5' flanking region |
Corrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:10741869-10742002 + | CATGTTTAGATCGGA-----CCCAAAGGTGGGCGACAAG---GGCTGGGAGCAGCAGTTGCTGGCGGTATTC---TGAAGCTGCTCTTCCGTGGGTTGCTCTT---------------------------GCTCCTG----------------------------ACCCTCCTCT---TCCTCCGCTTC------ATCCTCC--------------TCCGCAT |
| droSim1 | chr2L:10541288-10541421 + | CATGTTTAGATCGGA-----CCCAAAGGTGGGCGACAAG---GGATGGGAGCAGCAGTTGCTGGCGGTATTC---TGAAGTTTCTTTTTCGTGGGCAGCTCTC---------------------------GCTCCTG----------------------------ACCCTCCTCT---TCCTCCGCTTC------GTCTTCC--------------CCCGCAT |
| droSec1 | super_3:6159513-6159646 + | CATGTTTAGATCGGA-----CCCAAAGGTGGGCGACAAG---GGATGGGAGCAGCAGTTGCTGGCGGTATTC---TGAAGTTGCTTTTTCGTGGGCAGCTCTC---------------------------GCTCCTG----------------------------ACCCTCCTCT---TCCTCCGCTTC------GTCTTCC--------------CCCGCAT |
| droYak2 | chr2L:7146365-7146495 + | CATGTTCAAATCGGA-----GCCAAAGGTGGGCGAGAGG---GGCTGTGAGCAGCCGTTGCTGGCGGTGTTC---TGTCTCTGCTCCTCCGCCGGCTGCTGTT---------------------------GCTCCTG----------------------------ACCCTCCTCG---TCCTC---CGC------GTCTTCC--------------TCGCCGT |
| droEre2 | scaffold_4929:14689286-14689416 - | CATGTTCAAATCGGA-----CCCAAAGGTAGGTGAGAGG---GGCTGGGAGCAGCCGTTGCTGGCGGTATTC---TGCCTCTGCTCCTCCACCGGCTGCTGTT---------------------------GTTCCTG----------------------------AACCACCTCG---TCCT---CTGG------TTCGTCA--------------TCGCCTT |
| droAna3 | scaffold_13117:2651271-2651404 - | CAGCATTAGGGCGATCCTCCGCCAGTGGTTGATCGAA-G---GCATGGGATCCACCC----CAGCGTCTATC---TGAAAACGATGTTTATCCACCTGCTCCT---------------------------GCTCCTG----------------------------CTCCTCATCC---TCCTTCCCTTC------GTCTTCG--------------TCATCAT |
| dp4 | chr3:14693225-14693346 - | CATGTTCAGATCCGA-----TCCAAATGTGGGGGACAAG---GGCTGGGAACAGCCATTGCTCTGAGTGATG---TGCTGCTCCTCCCGC---------TCT----------------------------------------------CCCGTTGGCAGTTCCTCA---------------TCCTCCTC------GTCCGGG--------------TCTAGTT |
| droPer1 | super_4:2921871-2921992 + | CATGTTCAGATCCGA-----TCCAAATGTGGGGGACAAG---GGCTGGGAACAGCCATTGCTCTGAGTGATG---TGCTGCTCCTCCCGC---------TCT----------------------------------------------CCCGTTGGCAGTTCCTCA---------------TCCTCCTC------GTCCGGG--------------TCTAGTT |
| droWil1 | scaffold_180708:9012130-9012236 - | CATGTTTAAATCTGA-----ACCAAATGTGGCCGACAAT---GGTTGAGAGCAGCCATTTGTTAG------------------------------TTGTTCAT---------------------------CCTCTTC----------------------------ACAGGCTCCA---GCAGCTTGCTC------ACCCCCC--------------TCAGCGT |
| droVir3 | scaffold_12963:15905405-15905563 - | CATGTTTAAATCGGA-----GCCATAGGTAGCCGACAATGCCGGCTGCGAGCAGCCATTGCTTAGGGTTATC---TGCGGCTTCTGTGGT------GCCTGTTCCGTTGCGTTAATCGGCTGGGAGT---AGAGCTC----------------------------ACCGGCGGCC---------TCCAG------ATCGCTG----TCGCCTCCTGTCGCGAT |
| droMoj3 | scaffold_6500:3051871-3052002 + | CGTGCGTAGCT---G-----CTCGTGGCTGGGTGGCGTG---GCATTGTAGAGT-CTCAGC--------TGCTGCTGCTGCTGCTGCTCAGACTCCTGCTCTT---------------------------GCTCATG----------------------------CCCCTCCAGC---TCCTCCTCTTCAGCCTCGCTGTC-------------GCTCAGCGG |
| droGri2 | scaffold_15252:8305990-8306138 - | CATGTTCAAATCGGA-----GCCATAGGTGGCCGACATG---GGTTGTGACCACTCATTGGCCGATGCTTGC---GGT---TCCTTCT---CGGGTTCCGGTTCCGCTTCGGTCGCTGGCTGGG------AATAGGG----------------------------TTCCTCAGCT---GCATTCGCTTC------CTGATCG--------------CTGTCCT |