dme-mir-4965
No changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chrX_random | 4339106 | A | 3 | 0 | 0 | 0 | 0 | 0 | 0.353 | 0 | 0.647 | 0 | 17 | Ambiguous - Suggested base change does not agree with neighboring species | Loop |
Uncorrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:16500125-16500242 + | GTATTCGCAGTACAA---GCA-C--AAGGTGATCGA----TGG--GAG----ATGAG-----CG------CCTGATG--TGATGATGAA---GTAGATCGATCACACCACACAC-----------------------T------------CACTCA-CCCAGG-TTTCATCCATACA--AATG--TGTTTG |
| droSim1 | chrX_random:4339044-4339160 + | GTATTCGCAATACAA---GCA-C--AAGGTGATCGA----TGG--GAG----CTGAG-----CG------CCTGATG--TGATGATGAA---GTAGATCGATCACACCACACAC-----------------------T------------CACTCA-CCCA-G-TTTCATCCATGCA--AATG--TGTTTG |
| droSec1 | super_17:323461-323577 + | GTATTCGCAATACAA---GCA-C--AAGGTGATCGA----TGG--GAG----CTGAG-----CG------CCTGATG--TGATGATGAA---GTAGATCGATCACACCACACAC-----------------------T------------CACTCA-CCCA-G-TTTCATCCATGCA--AATG--TGTTTG |
| droYak2 | chrX:10606276-10606397 + | GAATTTAGAATAAAA---ACA-A--AAGGTGATCGA----TGG--GAG----CTGAC-----CTTGAGCCTGAGCTG--AGATGATGAA---GTAGATCGATCACAC-ACTCAC-----------------------T------------CACTCA-CTCA-G-TTTCATCCATGCA--AATT--TGTTTG |
| droEre2 | scaffold_4690:6858711-6858812 + | CC-----CAATAAAA---CCA-A--AAGGTGATCGA----TGG--GAG----CTGAG-----CC--------TGAAG--TGATGATGAA---GTAAATCGATCACA-----CAC---------------------------------TCA-------CTCA-G-ATTCATCCATGCA--AATT--TGTTTG |
| droAna3 | scaffold_13337:17013621-17013746 + | GAAATCTCAGCAGCAAGCTCA-G-----CGGATCGGGTGTTGG--AGG------------------------TGGTC--TGCCATTGAC---GAAGAGCAACAGCACCAATTCC-TTCC---------AGGAGCAT--------A--GCGCTCCCAA--GC-G-TCGTCCCAGTATG--GGTG--CCTTGG |
| dp4 | chrXL_group1a:8134511-8134553 - | ACTCC-------------------------------------------------------------------------------------------------------ACACAC-----------------------A------------CACA---CACA-C-AGACAGACATATA--AAGG--A-CATG |
| droPer1 | super_5:779941-779973 + | ACACTCGCACTCC------CA-C--AAGAAGAGCAG----CAG--TAG----------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | scaffold_180698:6476640-6476654 + | ATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--AATG--TGTGTG |
| droVir3 | scaffold_13042:4246856-4246902 - | CACACAC-AC----------------------------------------------------------------------------------------------------ACAC-----------------------A------------CACATGTACAG-C-TTTCACTCATGCA--TATT--TGTT-- |
| droMoj3 | scaffold_6500:26586811-26586907 + | GCATTTGCACTGC------TC-G--AAAATGAGCAA----TTG--CAAAGATCATTG-----CA--------C---------------A---ATACATTGC---------------------------AGAGAAAT--------A--CTG-------CACA-A-AATAATTTAGTTA--ATTTTAAGTTGA |
| droGri2 | scaffold_15245:5234538-5234618 - | GCAAAATGAA----C---ACA-A--AAACTGTTG--------------------------------------------------------------------CATACCACACACTAACTGTAAATATC------ACAT---------------------TT-T-TATTATTCTTATA--ATTA--TTAATA |