dme-mir-4964
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chrX | 7058055 | C | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0.333 | 0 | 0.667 | 9 | Genomic Error | miR |
Corrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:8859818-8859960 + | TCGCCATGCTTCGACAATT-TTTGAATGGTCCTTT------T-------------------------CATGCCCAAGG---------------------CGAATAAATATG-----TATTTATGTATA----TTTT--T----T--TATATGGTACGTATTTATTTGTCTGCAAATGGCTGCC--------------------------------AAGGAG--TGCTACATAATCAA-TTTGT----TTGTT |
| droSim1 | chrX:7057967-7058102 + | TCGCCATGCTTCGACAATT-TTTGAATGGTCCTTT------T-------------------------CATGCCCAAGG---------------------CGAATAAATATG-----TATTTATGTATA----TATA--T----T--TATAT-------ACGCATTTGTCTGCAAATGGCTGCC--------------------------------ATGGAG--TGCTACATAATCAA-TTTGT----TTGTT |
| droSec1 | super_34:222375-222488 + | TCGCCATGCTTCGACAATT-TTTGAATGGTCCTTT------T-------------------------CATGCCCAAGG---------------------CGAATAAATATG-----TATTTATGTTTA----TATA--T----T-------------------------------TGGCTGCC--------------------------------ATGGAG--TGCTACATAATCAA-TTTGT----TTGTT |
| droYak2 | chrX:12451967-12452096 - | TTGCCATGCTTGGACAATT-TTTGAATGGTCCTTT------T-------------------------CATGCCCAAGG---------------------CGAATAAATATG-----TATTTATGTGTA----GATA--------------T-------ATGTATTTGTCTGAAAATGGCTGCC--------------------------------AAGGAG--TGCTACATAATCAA-TTTGC----TTATT |
| droEre2 | scaffold_4690:6251913-6252052 - | TTGCCATGCTTGGACAATT-TTTGAATGGTCCTTT------C-------------------------CATCCCCAAGG---------------------CGAATAAATATG-----TTTGTGTGTACGAGTATATA--T----T--TATAT-------ATGTATCGGTCTGCAAATGGCTGCC--------------------------------AATGAG--TGCTTCAAAATCAA-ATTGT----TTGTT |
| droAna3 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| dp4 | chrXL_group1e:8134181-8134346 + | TTTCCATGCTTGGACAATTCTTTGAACGGTCGTCC------C---------------T----TTTTGCCAGCCCAAGGGGGGAGGGATGGGGGGGGGGGGGAATAAATATA-----TCAACAA----A----AATA--C----T-----------------CGTAAGGCGAATAATGGCAAC-GTCTGGGGTGAGCGATTGAGAGTTGTATCTGG-----A--AGCTATATAATC----------------- |
| droPer1 | super_13:433852-434017 - | TTTCCATGCTTGGACAATTCCTTGAACGGTCGTCC------C---------------GCCCGGTTTGCCAGCCCAAGGGGC----GGCGGGGGGAGGGGGGAATAAGTATA-----TCAACAA----A----AATA--C----T-----------------CGTAAGGCGAATAATGGCAAC-GCCTGGGGTGAGCGATTGAGAGTTGTATCTGG-----A--AGCTATATAATC----------------- |
| droWil1 | scaffold_181150:832777-832852 + | ATGTCTTCCATTCCCTATT-TGCGTATTTTCTTT---------------------------------------CAGTA---------------------TAAATGAATATG-----TATGAGTCGA------AATA--C----C-----------------T-----------------------------------------------------------------------------ATAA----ATGAT |
| droVir3 | scaffold_12726:2732407-2732514 + | TGGA------TCAACAAAT-GCCGCACATTTCTTT--------------------------------CTTGCTTTCGT---------------------TC-ACAATTTCTCTTGTAATATAATC---AATTTTTA--T----------------------------TCAATT--------------------------------------------CATA--CGATTCACATTCAA-TTCGTT---TGACT |
| droMoj3 | scaffold_6500:9117978-9118115 - | CA----AGCTGCGACTATG-TAATTAAAATTGTAT------G--TATCAGCGGGTCT----------ATTGCTATGTG---------------------TGTATAGGTGTG-----TGTGTGTGTGTA------TG--------------T-------GTGTGTATGTGTGCATATACAAAGC--------------------------------CATAAT--AGCATAAAACTCGA-TAAGC----CTGGC |
| droGri2 | scaffold_15110:597989-598133 + | TCGCCATATTTCGTTGAAT-T-------CTTCGCC------ATATATC---------G---------TATGAT---------------------------TTATATATATA-----TATATAAATATA----TATA--TATATTTCGGCTCCAAATATTTTTTATATTTTGCAAAGACTTGCT--------------------------------GTG--G--TTTTTCATAAGTGAGTTTGA-ATATTGTA |