dme-mir-4955
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chrX | 1743402 | G | 3 | 0 | 0 | 0 | 0 | 0 | 0.583 | 0 | 0.417 | 0 | 24 | Genomic Error | Loop |
| droSim1 | chrX | 1743513 | G | 3 | 0 | 0 | 0 | 0 | 0 | 0.615 | 0 | 0.385 | 0 | 26 | Genomic Error | 3' flanking region |
Corrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:2438757-2438956 - | TT------GCTGA-TGTCAA----AT---------------------------CA---CCG------ATTTGCTTCCCC---T---------TTT----------------T-CCGTGCG-CGGAGAAAAAAATCCCC-------------------------------AGAAACATAATATCAGGATGCT-------------------------------------------------------------------------------------------CTCTATCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTCTCTGTCTAACGCTTA-----ATTGTTGC-TCAATTGCGAAT-------------------------------------------------------------------------------------------------------------------------------------------TAATG-------------TCTGGGGCT--------TTTTTTCTCCGTGCAGTGCCATAGCCGTA-------------------------------------------------------------A-CCACA-ACCTGCC------------------------AGCCGTT----TAAAGC |
| droSim1 | chrX:1743323-1743545 - | TT------GCTGA-TGTCAA----AT---------------------------CA---CCG------ATTTGTTTCCCT---T---------TTT----------------T-CCGTGCG-CGGAGAAAAAAATCCCC-------------------------------AGAAACATAATATCAGGATGCT-------------------------------------------------------------------------------------------CTCTATATCTAT-----------------------CTCAGTCTGGGC-CCAAGTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTCCCTGTCTGACGCTTA-----ATTGTTGC-TCAATTGCGAAT-------------------------------------------------------------------------------------------------------------------------------------------TAATG-------------TCGGG-GCT--------TTTTTTCTCCGTGCAGTGCCATAGCCGTA-------------------------------------------------------------A-CCACA-ACCTGCC------------------------AGCCGTT----TAAAGC |
| droSec1 | super_10:2212704-2212927 - | TTT-----GCTGA-TGTCAA----AT---------------------------CA---CCG------ATTTGTTTCCCC---T---------TTT----------------T-CCGTGCG-CGGAGAAAAAAATCCCC-------------------------------AGAAACATAATATCAGGATGCT-------------------------------------------------------------------------------------------CTCTATATCTAT-----------------------CTCAGTCTGGGC-CCAACTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTCCCTGTCTGACGCTTA-----ATTGTTGC-TCAATTGCGAAT-------------------------------------------------------------------------------------------------------------------------------------------TAATG-------------TCGGG-GCT--------TTTTTTCTCCGTGCAGTGCCATAGCCGTA-------------------------------------------------------------A-CCACA-ACCTGCC------------------------AGCCGTT----TAAAGC |
| droYak2 | chrX:5905985-5906183 + | TT------GCTGA-TGT---------------------------------GTTCA---CCG------ATTTGTTTCCCC---T---------TTT----------------T-CCGTGCG-CCGAGAAAAAAATCCCC-------------------------------AGAAACATAATATCAGGATGCT-------------------------------------------------------------------------------------------CT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------CCTGTCTCTGTCTTACGCTTAATTTAATTGTCGC-TCAATTGCGAAT-------------------------------------------------------------------------------------------------------------------------------------------TAATG-------------TCGGGGGCT--------TTTTTTCTCCGTGCAGTGCCATAGCCGTA-------------------------------------------------------------A-CCAAA-ACCTGCC------------------------AGCCGTT----CAAAGC |
| droEre2 | scaffold_4644:2389120-2389318 - | TT------GCTGA-TGT---------------------------------GTTCA---CCG------ATTTGTTTCCCC---T---------TTT----------------T-CCGTGCG-CTGAGAAAAAAATCCCC-------------------------------AGAAACCTAATATCAGGATGCT-------------------------------------------------------------------------------------------CTCTGTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------CCTGTCTCTGTCTCACGGCAA-----ATTGTTGC-TTAATTGCGAAT-------------------------------------------------------------------------------------------------------------------------------------------TAATG-------------TCGGG-GCT--------TTTTTTCTCCGTGCAGTGCCATAGCCGTA-------------------------------------------------------------A-CCACA-ACCTGCC------------------------GACCGTT----TAAAGC |
| droAna3 | scaffold_12929:2354513-2354742 - | GT------GTTTC-TTCCAA----ATCTTCACTTCTCTTCTCTTTTCTTTTCT--------TTCCTT------------CTT---CTGTTTT---TT-T--TTTTTGTTGG-TCCCTGCA-CGGAGAAGAAGTT------------------------GTTAGGACATT-----------------------------------------------------------------------------------------------------AG--------------------------------------------------AGTGGA-----------------------------------CCTTAGT---GT-GG------------------------------------------------------------------------------------------TTAATAG--------------------------------------------------------------------A------------TCATATGACTCATTGTCCTTGCAATTATTTCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------ACTCGCTCC------------------AC-TTTTCTCTCTGTGCAGTGCCATAACCGTA-------------------------------------------------------------A-CCACA-ACCTGCC------------------------AGCCGTT----CAAAAA |
| dp4 | chrXL_group3a:2134676-2134849 - | TTTC----GCTGA-TTCGGGAATA----------TATTCTCCACCCCCCCACCCT---C----T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAT-TTCCTCTTCTGCTGACCTACACGATTTTCCC-CCTCTCT---------------------------------------------------------------------------------------CT-----------------------TAACGATCTTAACGCTCC----------------ACTCTT-----------TCT------------------------------------------GTCT--------CTCTCGATTTTTGCAGTGCCATAGCCGTA-------------------------------------------------------------AAACACT-GTCTTCC------------------------TACCGTT----TACCGT |
| droPer1 | super_13:248212-248305 - | TC------TCTGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTCTCTGTCTCAGGCGTA-----ACAGGTGCGTTGAGTGCATTTCAATTGTATGGATAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCTGTATTGTAATTGAA-------------------------------------------------------------ATCCACA-A----------------------------------------------- |
| droWil1 | scaffold_181096:12164007-12164188 - | TC------GCTGA-TTTTGGAAAA----------CATTTCTTATTTGCTCT----CCTTTA------ATTTATGTTTTTT---TTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTTGT-TCTTTTGTAT------------------------------------------------------------------------------------------------------ATTTTT-----------TAT---------------------------------------------------G--TTTATTTTGTTTGCAGTGCCATAAC-ATAATAATAGTTAATACTTATTGTGTTCACACAAAAATTTTGGGCCGCCGAATCGAAAACGAAT-A--------------------------------------------TCAA---AAC |
| droVir3 | scaffold_12928:1476007-1476072 - | TTT----G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTACTTGCAGTGCCATAAACATC-------------------------------------------------------------G-TAACC-TTTTTCTTTCTTTATCACGTCTAAACGCAT------------------ |
| droMoj3 | scaffold_6473:13536163-13536218 + | C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TTTTTCTCTCTTGCAGTGCCATAAACATC-------------------------------------------------------------G-TAATT--TTTTTC------------------------ATTTATT----TACGTC |
| droGri2 | scaffold_15203:8273975-8274075 + | AATA----GCTGA-A----------------------------------------------------ATTTGTTTTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAT----------TTCTTGCAGTGCCATAAACATCGTAACCTTTTTTCTTTTTTTTTCTT------------------------------------------------------------ACGTCAAAACGCATCGATCGCAT---CAGAGG |