dme-mir-4954
Changes
>dme-mir-4954-dm3
ATATAAGTGTTCGATTTGGCGCTTGGAATCGATACCCGAGCCATGATAGATTGAAGTCAACCCAATCGATCGCGGTTCGAGTGCTCGAGTCTTGTGCGCCGGCATGCTTGAGATGTCCACTA
>vgb65a08_5.b1:263-385
ATATAAGTGTTCGATTTGGCGCTTGGAATCGATACCCGAGCCCTGATAGATTGAAGTCAACCCAATCGATCGCGGTTCGGGTGCTCGAGTCCTGTGCGCCGGCATGCTTGAGATGTCCACTA
The ortholog was found in 2 of the 7 simulans line.
Corrected alignment:
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:1923021-1923142 - | ATATAAGTGTTCGATTTG--------------------------------GCGCTTGGAATCGATA-------------------------CCCGAGCCATGA--------------------TAGATTGAAG----TCA---------------ACCC-AATC------------GAT----CGCG----GTTCG----AGTGCTCGAGTCTTGTGCG---------------CCG-GCATG---CTTGAGAT---GTCCACTA |
| droSim1 | vgb65a08_5.b1:263-385 - | ATATAAGTGTTCGATTTG--------------------------------GCGCTTGGAATCGATA-------------------------CCCGAGCCCTGA--------------------TAGATTGAAG----TCA---------------ACCC-AATC------------GAT----CGCG----GTTCG----GGTGCTCGAGTCCTGTGCG---------------CCG-GCATG---CTTGAGAT---GTCCACTA |
| droSec1 | super_10:1708076-1708197 - | ATATAAGTGTTCGATTTG--------------------------------GCGCTTGGAATCGACA-------------------------CCCGTGCCCTGA--------------------TAGATTGAAG----TCA---------------ACCC-AATC------------GAT----CGCG----GTTCG----GGTGCTCGAGTCTTGTGCG---------------CCG-GCATG---CTTGAGAT---GTCCACTA |
| droYak2 | chrX:6403257-6403382 + | ACATAAAAGTTCAATTTG--------------------------------GCGCTTGGAATCGTAA-------------------------CTCGAGCCCTCA--------------------AAGATTGAAG----TCAA--------------ATGC-AATC------------GATCCGG----GGTG--TCG----AGTGCTCGATTCTGGTGCG---------------CCG-GCATGC--TTTGAGAT---GTCCACTA |
| droEre2 | scaffold_4644:1895276-1895400 - | ATATAAGTGTTCGATTTG--------------------------------GCGCTTGGAATCGAAC-------------------------CTCGAGCCCTGA--------------------CAGATTGAAG----TCA---------------ACCCAAAAC------------GAT----CCCGG---GGTCG----AGTGTTCGAGTCCGGTGCG---------------CCG-GCATGC--TTTGAGTT---GTCCACTA |
| droAna3 | scaffold_12929:1917028-1917098 - | ATATCCTT-----------------GACTTCATAAGGAACAA------------------------TGATCATGT-------------------------------------------------------------------------------------------------------------------------TAAG--------------GTTCT---------------CAG-GCATGT--CTCGAGATTATATCGAATC |
| dp4 | chrXL_group1a:2597066-2597203 - | ATATAAATACATA-----C--TGCA-----------------TAGTGTAGCAGAATGGACTCGGAA-------------------------CTCGATCCATGC------------ATGCCA------------CATGCCACATGCCACATGTCGC----------AGAGGGGGCAG-------CGTG----GCTCG----AGTGCCAGAGTCCGGCGA------------------------GG--CATGAGACTAC---TTACC |
| droPer1 | super_28:1034311-1034357 - | A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------CGTG----GCTCG----AGTGCCAGAGTCCGGCGA------------------------GG--CATGAGACTAC---TTACC |
| droWil1 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | scaffold_6473:2911987-2912050 + | ATATATGTGTGTGTGTTT--------------------------------GTGTATTGTATTTAGA-------------------------TTTGAGCTATAA--------------------AATGTTTAAT----AAA---------------ACTC-A-------------------------------------------------------------------------------------------------------- |
| droGri2 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |