dme-mir-4947
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chr3R | 24521012 | A | 3 | 0 | 0 | 0 | 0 | 0 | 0.353 | 0 | 0 | 0.647 | 17 | Genomic Error | 5' flanking region |
Corrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:24834459-24834589 - | TAAAGTAAT------AATATGAAAGCGACCCACC------C-ATT------CCCCTTC--CG-C---------------------C------CATATTTATCC-------TTCGTCTACTGTTTCATCGCAGGATTT-------A-A-------------------------------GTGGGCG-------G-----------AG------------CACGGAATTCGGGGGCGTGGCGCACTGGGT-------AGCGGGTA |
| droSim1 | chr3R:24520998-24521128 - | TAAAGTAAT------AATATGAAAGCGACCCACC------C-ATT------CGCCGCC--CG-C---------------------C------CACTTTTATCC-------TTCGTCTACTGTTTCATCGCAGGATTT-------A-A-------------------------------GGGGGCG-------G-----------AG------------CACGGAATTCGGGGGCGTGGCGCACTGGGT-------AGCGGGTA |
| droSec1 | super_4:3696490-3696620 - | TAAAGTAAT------AATATGAAAGCGACCCACC------C-ATT------CGCCGCC--CG-C---------------------C------CACTTTTATCC-------TTCGTCTACTGTTTCATCGCAGGATTT-------A-A-------------------------------GGGGGCG-------G-----------AG------------CACGGAATTCGGGGGCGTGGCGCACTGGGT-------AGCGGGTA |
| droYak2 | chr3R:21664594-21664723 + | TAAAGTAAT------AATATGAAAGCGACCGGCC------C-A-C------CCCTCGC--CG-C---------------------C------CACTTTTATCC-------TTCGTCTACTGTTTCATCGCAGGATTT-------A-A-------------------------------GTGGGCG-------G-----------AG------------CACGGAATTCGGGGGCGTGGCACAGTGGGT-------AGTGGGTA |
| droEre2 | scaffold_4820:3199292-3199428 + | TAAAGTAAT------AATATGAAAGCGACCGGCC------C-A-C------CCCTTTC--CG-C---------------------C------CACTTTTATCC-------TTCGTCTACTGTTTCATCGCAGGATTT-------A-A-------------------------------GGGGGCG-------T-----------AG------------CACGGAATTCGGGGGCGTGGCACAGTGGCTAGTGGATAGTGGGTA |
| droAna3 | scaffold_13340:19733656-19733776 + | TAAAGTAAT------AATATAAAAGCGACCAGCC------C-CTA------CTTCTA---CTCC----------ACCCAACCAGCCTC---CCGATCCTGGGC-------AGCGTTGGTTGTTTCAGA-----------------------------------------------------GGCG-------G-----------C------------TTGAGGAACTCGGGGGCGTGCC-----------------GCTCCTA |
| dp4 | chr3:722533-722667 - | TAAAGAGAT------AATGACAAAGCAACCCATT------A-AAAGCCATCCCTTGACAACACT---------------------C------CTCTCTCATCC-------CCT--TCATATTCCCATCTCCGAA----------A-A-------------------------------ATGAGCG-------A-----------AG------------AACGGAGAGCAACGTTTTAATAAATTTGTA-------AACAGATT |
| droPer1 | super_26:1114277-1114391 - | GACGGTGGC------CTTCCA-------CTTCCT------C-TTC------CGCCGCC--AC-C-------------ACACCCCCTTC---CCAC-----TGCCAAGCA-CGC-----TCTTTTTATCGCAAT------------------------------------------------TGTTGTCGGCGG-------------------------------------ATTTTCGGCTTACATGCG-------AGGAGCTA |
| droWil1 | scaffold_181096:10088805-10088934 + | CAAAATGTCCTTGATGACTGG-CATTCACACACA------C-A-C------ACACACA--CA-CACACATTTAAACACATCCATATGT---AC-------ATCCATGTATACATTTATCTAATA----------------------------------------------------CA-GATGCA-------G-----------AG------------CT---------------CGGAACTTCAAGT-------ATAAGGCA |
| droVir3 | scaffold_13049:15807-15938 + | TATG-TGGC------AGTAGAAATTTCTCCCATAAATATAT-GTA------CCCTTTC--CG-T---------------------C------TTTATGTTTGT-------TTGGTTGAATGGATCGAACTACAAATC-------T-A-------------------------------GAGATTA-------G-----------AA------------ATTGGAAATCCGTATTCTAGTAA----TGT-------ATCCAGAA |
| droMoj3 | scaffold_6500:17797597-17797712 + | CACACACAC------A--------------CACA------C-AGA------CTTTGGC--TA-C---------------------A------AAATGTTAACT-------TGAGTTTGAAATTTTCCAG-GGAATAT-------G-A-------------------------------GTGAGAG-------G-----------CG------------AGCGAAAGCAGTGAACAGAGTGAACAATGT-------ATAAAGTA |
| droGri2 | scaffold_14853:8203259-8203387 + | CAAATTAAC------AACAAGAATTCTTTCCAGC------T-CCC------TCTCT----CTCT---------------------C------TCTCTCTCTCT-------CTAACTCCGTCTCTCATTTCCGAGAGA---GAGCT-A-------------------------------GTTACAT-------T-----------GCTGAGAGAGAAGTGAAGA-GA------GCCGAGC-----------------TTTGTTA |