dme-mir-4940
No changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chr3L | 8545622 | T | 3 | 0 | 0 | 0 | 0 | 0 | 0.556 | 0 | 0 | 0.444 | 9 | Ambiguous - Suggested base change does not agree with neighboring species |
3' MOR |
Uncorrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:9137677-9137812 + | CCAG--------------------------------------------------------------------------------------------------------------------------------------------------ACTCAGACGGACT-------TATCGCAACTTATC----GATCGGGTGGCGGATAT----------AGATCAT-----------------T---------G------------GTTA----TCCC-TT---A-------------------------------------------------------------------AT--------T-----AAA----GC--------AAACAAG------ATTTGTTTCGGCCGC---CCGATT-T---------------TACATACAACGACACGAATA----------------------------G---CAGGATATAG |
| droSim1 | chr3L:8545595-8545743 + | CCTG--------------------------------------------------------------------------------------------------------------------------------------------------ACTCAGACGGACT-------TATCGCAGCTTATC----GATCGGGTGGCGGATAT----------AGATCATAGCAAGCCCTATCGAATT---------G------------GTTA----TACC-TATTAA-----A------------------------------------------------------------------------------------GC--------AA-CTAG------GTTTGTTTCGGCCGC---CCGATT-T---------------TACATACAACGACACAATAG--------------------------------CAGGATATAG |
| droSec1 | super_0:1396669-1396817 + | CCTG--------------------------------------------------------------------------------------------------------------------------------------------------ACTCAGACGGACT-------TATCGCAGCTTATC----GATCGGGTGGCGGATAT----------AGATCATAGCAACCCCTATCGAATC---------G------------GTTA----TACC-TATTAA-----T------------------------------------------------------------------------------------GC--------AA-CTAG------GTTTGTTTCGGCCGC---CCGATT-T---------------AACATACAACGACACAATAG--------------------------------CAGGATATAG |
| droYak2 | chr3L:2783249-2783373 - | CCAG--------------------------------------------------------------------------------------------------------------------------------------------------ACTCAGACGGACT-------A---GCAACTTCGC----GATCGGGTGGCGGCTGT----------AGATTGT-------------------------------------------------CCT-TG---T-------------------------------------------------------------------AT--------C-----AAA----GG--------AAAAGAG------ATTTCTTTTGGCCAC---CCGATT-C---------------AAAATACAACGACACAATAG--------------------------------CAGGATATAG |
| droEre2 | scaffold_4784:4908876-4909031 - | CCTG--------------------------------------------------------------------------------------------------------------------------------------------------ACTCAGACGGACT-------A---GCAACTTATC----GATCGGGTGGCGGATATACCCGTGCACAGATTGTAGCACACCCTATCGAATT---------G------------GAAT----TCCC-CATTAA----AA------------------------------------------------------------------------------------CT--------GA-GTGG------GCTTATATCGGCCGC---CCGATT-C----------------ACATACAACGACACAATAG--------------------------------CAGGATATAG |
| droAna3 | scaffold_13337:19535893-19536018 + | CACT-----GCGATCTCGAGTACTTTGATCTC-------------------------------------------------------------------------------------------------------------------------------------------------TCTTCTC----A--GGGCCCCAAAAAGT----------ATGCTATGAAATATTTCGTT-TGCT---------A------------------------------------------------------------------------------------------------------------------AAG----TG--------TTTCAAG------GATTCTTTTGCGAGC---C----------------------------CACCTCAAGGATGT--------------------------------CAAACTCTAG |
| dp4 | chrXR_group5:393309-393508 - | C-AG--------------------------------------------------------------------------------------------------------------------------------------------------ACTTAGACGGACTTCAATCTA---GCAGTTTAAC----GATCGGGAAACGGGAAT----------AAACCAAAGTCGGC---------------------------------------------------------------------AGCCTATCCATCAAAATTCCAATATAATCACAACAGAAATCCAATTTGTTGC-----------------------------------T-------GGTTTATTTACGTTTC---TCGAGC-C----------------ACATACAACGACACAACAGCAGGTCTTCAGATAACTCATATGAAATAT---ACTTATGCGG |
| droPer1 | super_9:3484001-3484112 - | GCAT--------------------------------------------------------------------------------------------------------------------------------------------------ACATAGGCATCGC-------A---TCCA------------TCGGG--------------------------------------------------------------------GTC----ACCC-G--G-TGGAGGA---------------------------------------------------TAAATTTTGCGG--TGGTAACCCCGCAACACAAGCACTC------------------------------------------A---------------CACACACAGCGACCCAAACA----------------------------C---GTGCAATAAC |
| droWil1 | scaffold_181096:6035694-6035827 - | TCAG--------------------------------------------------------------------------------------------------------------------------------------------------GCCTAAAATTAGT-------TGCCATAACT-CTC----ATTTATATAGTAGATTT----------GATGCTTTTTTG-----------------------------------------------------------------TTTT----------------------------------------------------TT--------T-----AAT----AT--------AT-TAAA------ATTTTTATTA-ATGC--------------ATTTCAGTGTAAAAATTAAAATGACACATTTT----------------------------T---CCTTACGTAA |
| droVir3 | scaffold_13246:101577-101715 - | CAGG-----------------------------------------------------------------------------------------------------------------------------------------------------CAGACGAAA--------------GTATCTCC----GACCCCATGAAGTGTAT----------ATATTCT-----------------TGATCAGCATCAATAGCTGAGTCGAT-------------GTA-----GCCATGTCCGTCT------------------------------------------------------------------------------------------------GCCTGTCCGTCCGT---CCGTCC-GTATGTA--------------TGAACGCAAGGATCT--------------------------------CAGAACCTTT |
| droMoj3 | scaffold_6540:2381798-2381917 - | GTAG--------------------------------------------------------------------------------------------------------------------------------------------------ATTCAGTTGTACT-------TTATAGAA--TTTC----GATTTA------------------------------------------TGT----------TAAAAT-----------TCA--TCC-C--T-T-------------------------------------------------------------------AC--------C-----AAT----AT--------AT-ATG-------TGTTTTTTCAAATGC-ATGCATT--T---------------TAATGGTATCAACACAATTT----------------------------G---AAAGTCTCAT |
| droGri2 | scaffold_15074:3698733-3698860 + | CTGA--------------------------------------------------------------------------------------------------------------------------------------------------ACATAACTGAATA-------A---ATT-----------------------------------------------------------------------------------------------------------------------------------------------------CACAACAT--ATTTAGTCAGTTACTTATGTATATACTTGATACAATTGTGCAAACATGCAAA------ATTCCAATTAAATGT--------------------------------------CACAATAT------------------ATAAAAACTGATGCGAGAAGATTG |