dme-mir-4939
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chr2R | 17459578 | A | 3 | 0 | 0 | 0 | 0 | 0 | 0.154 | 0 | 0 | 0.846 | 13 | Genomic Error | miR |
| droSim1 | chr2R | 17459613 | C | 3 | 0 | 0 | 0 | 0 | 0 | 0.067 | 0.2 | 0 | 0.733 | 15 | Ambiguous - Suggested base change does not agree with neighboring species |
3' flanking region |
Corrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:18872718-18872857 - | ATGCACATTTA--TTTGGCATCATGCTTCTGC-----------GA------------------TCTCTA------------------CCAATTTTCCT------------------TGCACTCTTTG------TCCTTTCCAAAAGTGAC--------------------ACGGGTGCAGGTGAAGA---TTCGGAA------GAG----GACGACGA-AAAC-GACTGCA-A---CCGGACGACTCTTGGT |
| droSim1 | chr2R:17459524-17459663 - | ATCCACATTTA--TTTGGCATCATGCTTCTGC-----------GA------------------GCTCTA------------------CCACTTCTCCT------------------TGCACTCTTTG------TCCTTTCCAAAAGCGAC--------------------ACTGATGCAGGTGAAGA---TTCGGAG------GAG----GACGACAG-CGAA-GACTGCA-A---CAGGACGACTCTTGGT |
| droSec1 | super_9:2164747-2164886 - | ATCCACATTTA--TTTGGCATCATGCTTCTGC-----------GA------------------GCTCTA------------------CCACTTCTCCT------------------TGCACTCTTTG------TCCTTTCCAAAAGCGAC--------------------ACTGATGCAGGTGAAGA---TTCAGAG------GAG----GACGACAG-CGAA-GACTGCA-A---CAGGACGACTCTTGGT |
| droYak2 | chr2R:18832811-18832950 - | AACCGCGTTTA--TTTGCCAAAATGCTGCTCC-----------GA------------------GCTCTA------------------CCACTTCTGCT------------------CACACTCTGTGTGTTGGTCCTCTCCAACGACGAC--------------------ACGGATGCAGATGAAGA---AGAGGAA------GAG----G---A----CGAC-GACTGCA-A---CAAGGCGACTCTTGGT |
| droEre2 | scaffold_4845:20234099-20234238 - | AACCACGTTTA--TTTGCCATAATGCTGCTCC-----------GA------------------ACTCTG------------------CTCCT------------------------TACGCTCTTCGTGTTTGTCCTTGCCAAAAACGAT--------------------ACGATTGCAGAAGTAGA---GGAAGAGTCGGACGAG----G---A----CGAA-GGATGCA-A---CAAGGCGACTCTTGGT |
| droAna3 | scaffold_13266:15204126-15204261 - | ATTTAAGAGCT--TTTCCCTTCAAAGCCTAAACAGTTGACACAAAATGTGGC---------------TA------------------CC----------------------------------------------CTTCTTGCTAGTGGC--------------------ACTGCCTTGGGGGACTG---TG-G----------TGGGGGGAGGTCCTCTGAC-ATTGGCCAATCTTAGCCGAATCATTGGA |
| dp4 | chr3:14089101-14089284 - | AAGCAATT-AG--TTTGCCATT--------------------------TGCCATCTTATCGGGGTAATACCCAATCCAATTTATTGACCAATT----CGAGATAGTCCCAAAGCTTTTCGCTGATTGCAACGATCCATTCCAAAGAAATTTTAGTAAC----------------TCCCAGAACAACA---AA-A----------TGAACAAAGCTCGATCCGC-GTTCGCC-G---CCGCCCTTCTTTTGCT |
| droPer1 | super_4:1228949-1229132 + | AAGCAATT-AG--TTTGCCATT--------------------------TGCCATCTTATCGGGGTAATACCCAATCCAATTTATTGACCAATT----CAAGATAGTCCCAAAGCTTTTCGCTGATTGCAACGATCCATTCCAAAGAAATTTTAGTAGC----------------TCCCAGAACAACA---AA-A----------TGAACAAAGCTCGATCCGC-GTTCGCC-G---CCGCCCTTCTTTTGCT |
| droWil1 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| droVir3 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| droMoj3 | scaffold_6496:24343095-24343103 - | AT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGGC |
| droGri2 | scaffold_15112:3934700-3934745 - | ATATTCAATA-----TGC------------------------------------------------TGA------------------GCACATCTTCT------------------GAAAGCATTTCAGACTTTC--------------------------------------------------------------------------------------------------------------------- |