dme-mir-375

dme-mir-375

Changes

D. ananassae through D. grimshawi substitutions in the miR* region are all supported by trace reads.

Species

Chrom

Pos

Ref base

Type

A

C

G

T

RNAseq Total

A

C

G

T

Trace Total

Decision

Partition

droSim1

chr2L_random

38981

A

3

0

0

0

0

0

0.364

0.636

0

0

11

Genomic Error

5' MOR

Corrected Alignment:

dme-mir-375

Species	Coordinate	Alignment
dm3	chr2L:857527-857647 +	CATCCGAAACC----C------------------------CTTC--------CGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATC--------------A-TCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGAC----------TAAAGCGCCACGTGG--------T
droSim1	chr2L_random:38968-39087 +	CATCCGAATC-----C------------------------CTCC--------CGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATC--------------A-TCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGAC----------TAAAGCGCCACGTGG--------T
droSec1	super_14:828161-828280 +	CATCCGAATC-----C------------------------CTCC--------CGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATC--------------A-TCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGAC----------TAAAGCGCCACGTGG--------T
droYak2	chr2L:841557-841670 +	CATCCGAGTC-----C------------------------------------CGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATGC-----------------CTAGTAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGAC----------TAAAGCGCCACGTGG--------T
droEre2	scaffold_4929:914698-914811 +	CACCACCATC-----C------------------------------------CGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATGC-----------------CTAGTAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGAC----------TAAAGCGCCACGTCG--------A
droAna3	scaffold_12916:2746986-2747121 +	CCACGGAAA-----------------------AGACACC-CCACGGAAACGAGGGGCAGCGAATTACTTGGGCCAAGGGAATTCAAACTGTG---ATCGC-----------AA-TGCTAGAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGTT----------GCAAACGCCACGTGG--------T
dp4	chr4_group3:5649077-5649230 +	CATCCAAGGCCTG-----TGCCTGTGTCTGAGAGCCCAC-CCACCCGAAT--AGGGCAGCGAATTACTTGGGCCAGGGGAATTCAAACTGTG---ATCGC-----------AA-TGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCTCAA----------GTAAACGCCACGTGGG------TT
droPer1	super_1:7140235-7140385 +	CATCCAAGGCCTG-----TGCCTGTGCTTGAGAGCCCAC-CCACCCGAAT--AAGGCAGCGAATTACTTGGGCCAGGGGAATGCAAACTGTG---ATCGC-----------AA-TGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCTCAA----------GTAAACGCCACGTGG---------
droWil1	scaffold_180772:2278802-2278947 -	AATTTAAAAC-----CGTTTTCCATTTC--------ATTTTTTG--------GGGGCAGCGAATTACTTGGGCCAAGGGAATTCAAACTGTG---AATT-----ATTTCAAAA-TGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGTAC---------AATTGCGACACGTGG--------T
droVir3	scaffold_12963:19405390-19405507 +	CATTCAAAGT-----T------------------------------------CGGGCAGCAAATTACTTGGGCCAAGGGAATGCAAACTGTC---AACGC-----------AT-TGCAATAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCAAC-----------ATAACGCCACGTGG--------T
droMoj3	scaffold_6500:23808221-23808350 -	TGTTCAGTGTATGCTC------------------------CTGC--------AGGGCTGCGAATTACTTGGGCCAAGGGAATGCAAACTGTTCGAAAAGC-----------AT-TGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCGAT-----------AAAACGCCACGTGG--------T
droGri2	scaffold_15252:7270330-7270448 +	C----------------------------------------------------GGGCAGCGAATTACTTGGGCCAAGTGGATGTAAACTGTG---AAAGCGCATTTTGCATAT-AACAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCGAT-----------ATAACGCCACGTGG--------G