dme-mir-304

This miRNA belongs to the mir-283, mir-304, mir-12, and mir-12-as cluster.
The persimilis ortholog is reported as missing in the multiple-alignment, even though persimilis orthologs are found for the other members of this cluster
- The correct persimilis ortholog was not found by searching the persimilis trace reads with the pseudobscura ortholog.
- dpe-mir-304 ortholog was found after PCR amplification and reseqncing of a gap in the persimilis genome assembly.
No variants were flagged from the trace data.

dme-mir-304

Species	Coordinate	Alignment
dm3	chrX:15402977-15403094 +	GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TAAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droSim1	chrX_random:4023795-4023912 +	GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droSec1	super_73:137399-137516 +	GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droYak2	chrX:9589334-9589451 +	GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droEre2	scaffold_4690:11631458-11631575 -	GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droAna3	scaffold_12929:2899093-2899202 -	-----------ATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGCCATTTGACGGACTCACTTTGCAACTGGAGATTGCTCGAGACTGCGGCATATGCCACAAAGT
dp4	chrXL_group1a:977383-977495 +	------ACTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGGCATTTGACACACTCACTTTGCAACTGGAGATTGCTCGAAACTGCGGCACATGCCACA--TT
droPer1	Unknown	------ACTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGGCATTTGACACACTCACTTTGCAACTGGAGATTGCTCGAAACTGCGGCACATGCCACA--TT
droWil1	scaffold_180702:1593181-1593292 -	-------TTGTATCTGTAACATTGATTAATCTCAATTTGTAAATGTGAGCGATTTAAATCCATTCGATGCACTCACTTTGCAATTGGAGATTGCTCGAGATTGCAGCATATGCCACA--TT
droVir3	scaffold_12970:2048738-2048856 +	TTGTTAAACTTATCTGCAGCATTGATTAATCTCAATTTGTAAATGTGAGCGATTTTAAAGTATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGATTGCAGCTTATGCCACA--TA
droMoj3	scaffold_6359:3259146-3259264 +	GTCCAACTCTTATCTGCAGCATTGATTAATCTCAATTTGTAAATGTGAGCGATTTTTAACTATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCAGCATATGCCACA--TT
droGri2	scaffold_14853:6952274-6952391 -	TTGTTAACT-TATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATTATTAAGAATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGATTGCAGCATATGCCACA--TT