dme-mir-3

This miRNA belongs to a cluster which includes mir-309, mir-3, mir-286, mir-4, mir-5, mir-6-1, mir-6-2, and mir-6-3
No changes
- Multiple substitutions in the miR* region of droYak2 - droGri2 are supported by the majoirty or all the sRNAseq or trace reads.

dme-mir-3

Species	Coordinate	Alignment
dm3	chr2R:15549085-15549183 -	GCCAC-------------C-TA---AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAAT---------CT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTC---G-----------
droSim1	chr2R:14254518-14254616 -	ACCAC-------------C-AA---AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTCCAAT---------CT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTC---G-----------
droSec1	super_1:13063812-13063910 -	ATCAC-------------C-AA---AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAAT---------CT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTC---G-----------
droYak2	chr2R:13623606-13623704 +	ACCAT-------------C-AA---AGGTCCTGATCCTGGGATGCATCTTGTGCAGTCATGTTTCCAT---------CT------CACATCACTGGGCAAAGTGTGTCTCAAGATCTTGGCCACTTCGAC---G-----------
droEre2	scaffold_4845:9749329-9749427 -	ACCCA-------------C-CA---AGGTCCTGATCCTGGGATGCATCTTGTGCAGTTATGTTTCTAT---------CT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACTTCGAC---G-----------
droAna3	scaffold_13266:9731210-9731313 +	GCCCC-------------CAAC---TGGCTACGATCTTGGGACGCATTTTGTGCAGTTATGCACCAAA---AATAT--------ATCCATCACTGGGCAAAGTGTGTCTCAGGATCTTGGCCATCTCAAC---G-----------
dp4	chr3:12677741-12677846 -	ACGAC-GA--------TAC-CG---AGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACGT--GATCAT--------CCTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCA-----A-----------
droPer1	super_2:8905820-8905925 +	ACGAC-GA--------TAC-CG---AGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACGT--GATCAT--------CCTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCA-----A-----------
droWil1	scaffold_180701:1651920-1652025 -	TCGAA-------------T-TT---AGACCATGATTTTGGGATGCATTTTGTGCAGTTATGTCTTCATGTGATAATTCT------CTCATCACTGGGCAAAGTGTGTCTCATAATTTTGGTAACCATA-----T-----------
droVir3	scaffold_12875:4111929-4112038 +	AATAAAAATACCAGAATCT-CA---TAGCTCTGCTTTTGGGATGCATTTTGTGCGGTTATGTCTGCCT---------CC--AAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCTACC--------------------
droMoj3	scaffold_6496:20936961-20937077 -	AACTC-------------T-CG---CAGCTCTACTTTTGGGATGCATTTTGTGCAGATGTCTAACGAT---------TG--GAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGGGGCAACTAGCACAAAGGAGGAGTGTTT
droGri2	scaffold_15112:2109003-2109099 -	AATTT-------------T-CA---TAGCTCTGCTTTTGGGATGCATTCTGTACAGTAATGTTGACTC----------TTGTAAAACCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCAA----------G-----------