dme-mir-282

dme-mir-282

No changes

Willistoni through grimshawi substitutions in the miR* region are all supported by trace reads.

Species

Chrom

Pos

Ref base

Type

A

C

G

T

RNAseq Total

A

C

G

T

Trace Total

Decision

Partition

droSim1

chr3L

2784478

G

3

0

0

0

0

1

0.625

0

0.375

0

16

Ambiguous - Suggested base change does not agree with neighboring species

3' MOR

Uncorrected Alignment:

dme-mir-282

Species	Coordinate	Alignment
dm3	chr3L:3251007-3251133 +	CC------------------------GTTCTTTAA-C-------TA------TAGTTTCCTTCTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAACAATCAGCG------------------AAAACGGA
droSim1	chr3L:2784381-2784507 +	CC------------------------GTTCTTAAA-C-------TA------AAGTTTCCTTTTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAACAATCAGCG------------------AAAACGGA
droSec1	super_2:3244745-3244871 +	CC------------------------GTTCTTAAA-A-------TA------AAGTTTCCTTTTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGTGAACAATCAGCG------------------AAAACGGA
droYak2	chr3L:3795918-3796050 +	TC------------------------GTTCTATATCC-------GT-TATATCAGTTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TACGAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGTGAAAAATCAGCG------------------AAAACGGA
droEre2	scaffold_4784:5933708-5933834 +	TC------------------------GTTCTATCA-C-------CA------CAGTTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCAAAAG-CCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAACAAGCAGCG------------------AAAACGGA
droAna3	scaffold_13337:7556585-7556720 +	CC------------------------GTTCTAATT-CGAAAATCGA------AAATTTCCTTATAGATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAAAG-TCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGACAAGACATCA----------------CAAAAACGGA
dp4	chrXR_group8:3299974-3300083 -	--------------------------------------------------------TGCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGAAAACCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGAAGAAATGCATCA------------------AAAGCGGA
droPer1	super_65:103931-104040 -	--------------------------------------------------------TGCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGAAAACCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGAAGAAATGCATCA------------------AAAGCGGA
droWil1	scaffold_181136:1999668-1999787 +	TT------------------------TTCCTTTAT-G-------TAATATTAATATATCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGGA------TTCAGACATAGCCTATGAGAGGTTAGGTGTACCAAGGAGAAAATACAACA--------------------------
droVir3	scaffold_12758:910696-910814 -	GC------------------------GTCCGAC-------------------AAATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGATAT-ACGGTCAGACATAGCCTATGAGAGGTTAGGTGTACCAAGGGGAC-AAGCAGCG------------------AGGGCG--
droMoj3	scaffold_6680:1963284-1963406 -	AT------------------------TTTTTTTTGCG-------GT------GCATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGATAT-AAGATCAGACATAGCCTATGAGAGGTTAGGTGTAGCAAGGGGTCA-AACAGCA------------------GA----GA
droGri2	scaffold_15110:607073-607202 +	--------------------------------------------------------TTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCACTTTTTCAAT-TCAATCAGACATAGCCTATGAGAGGTTAGGTGTACAAATGGATCAAAGCAACAAGGCTGCTGTCGGGGACTAAAAATGA