dme-mir-252
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chr3R_random | 533541 | A | 3 | 0 | 0 | 0 | 0 | 0 | 0.333 | 0 | 0.667 | 0 | 9 | Ambiguous - both alleles agree with melanogaster and sechellia. | 3' MOR |
Uncorrected Alignment:
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:9289926-9290048 - | GTG-------TGCCGCCTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA |
| droSim1 | chr3R_random:533427-533549 - | GTG-------TGCCGTCTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA |
| droSec1 | super_0:12715202-12715324 + | GTG-------TGCCGTCTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA |
| droYak2 | chr3R:13598006-13598135 - | GTGCTAGATGTACGATGTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA |
| droEre2 | scaffold_4770:12350666-12350788 + | GTG-------CTAGATGTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA |
| droAna3 | scaffold_13340:1848657-1848824 - | GAG-------T-------ACTTAG-----------CCCCAACCATTGGTAAATATTGATTTTATACTTACATTA--CTTCCTGCGAAG-TCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTCCAGCAAAATACA-A--GGAA |
| dp4 | chr2:16736618-16736739 - | TA--------TCTTGTGCATTT----------------------------------------------------------TGGC--GGTTTGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG--GTGGTCCAACAG-------T--GAAA |
| droPer1 | super_0:3659179-3659300 + | TA--------TCTTGTGCATTT----------------------------------------------------------TGGC--GGTTTGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG--GTGGTCCAACAG-------T--GAAA |
| droWil1 | scaffold_181130:6363211-6363342 - | GAT-------GGATCAATACTT----------------------------------------------AC-TTGAAC--GAAGC--GTATTGCTTTACTAAGTACTAGTGCCGCAGGAGTTTGGTTCGTGTCCGTAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGACGA-CTTTACCTACTT-------A--AAAA |
| droVir3 | scaffold_12855:2861518-2861626 + | T-----------------------------------------------------------------------------------------TGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTTGTGTCCGCAATGCCTCCTGCTGCCCAAGTGCTTATTAAAGCGACTA-GTTTTCCACCAGCA-ACAATTAGAAA |
| droMoj3 | scaffold_6540:10349255-10349360 - | T-----------------------------------------------------------------------------------------TGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGGTTGTGTCCGCAATGCCTCCTGCTGCCCAAGTGCTTATCAAAGCGACGA-GTTTTTCAACAGCA-GCA-A--TTAA |
| droGri2 | scaffold_14906:3807816-3807948 - | TTG-------TGGCACTTACTT---------------------------------------------------GAGCTTGATGC--GTATTGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTTGTGTCCGCAATGCCTCCTGCTGCCCAAGTGCTTATTAAGGCGACGA-ATTTTCCAACAATGT----G--CGAG |