dme-mir-2280
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chr2L | 1818747 | T | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0.571 | 0 | 0.429 | 7 | Genomic Error | 5' flanking region |
Corrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:1831670-1831814 - | TGGAGAAGAGTGATATCGTTTAAGATGC---------TGTGAATATCCCGTTTTCTTAGCTTGGCAATAAAAT-ATTA------------------------------TTCACAGAAACTAGTAATTTACTT-----------CCAAGCTAACTGAAGGGGAT-ATTCAGTGCAACCACG--GACTAAAAATGCGTT-TG |
| droSim1 | chr2L:1818710-1818856 - | CGGAGCAGAGTGATATCGTTTGAGATGC---------TGTGAATATCCCGTTTTCTTAGCTTGGCAATAAAAT-ATTA------------------------------TTCACAGAAACTAGTAATTTACTT-----------CCAAGCTAACTGAAGGGGATTATTCAGTGCAACATCG--GACTAAAAATGCTTTTTG |
| droSec1 | super_14:1778365-1778510 - | CGGAGCAAAGTGATATCGTTTGAAATGC---------TGTGAATATCCCGTTTTCTTTGCTTGGCAATAAAAT-ATTA------------------------------TTCACAGAAACTAGTAACTTACTT-----------CCAAGCTAACTGAAGGGGAT-ATTCAGTGCAACCACG--GACTAAAAATGCTTTTTG |
| droYak2 | chr2L:1804987-1805119 - | CGGAGCAAACTGATGTCGTTTAGGATGC---------TGTGAATATCCCATTTTGTTAGCTTGGCAATAAAAT-ATTG------------------------------TTGATTGAAACTAGTAATTTACTT-----------CCAAGCTAACTGAAGTGGAT-ATTC--TA------------CAACAAATGGGTT-TT |
| droEre2 | scaffold_4929:1878584-1878709 - | CGGTG-----TGATTCTGCTTAAGGTGC---------TGTGAATATCCCATTTTCTTAGCTTGGCAATAAAAT-ATTA------------------------------TTCATCGA-ACTAGTAATTTAATT-----------CCAAGCCAACTAAAGGGGAT-ATTCACTG---------------CAAATGCATT-TG |
| droAna3 | scaffold_12916:15757494-15757644 + | CGTAGAAGCTT-AC-----TAGTTC--------------------------------TGTTTGGTAATAAAGT-TATTCTTTTTTATCTCAAAATGACTCACGTTTTTTTTTTCGA-ATCATTAAATAACATTTATATTTTCCCTAAGC-------CCTGAAT-ACTTATTATAAAAAAGACGATTATAAAAGTATA-TG |
| dp4 | chr4_group3:8561836-8561913 - | TGTTGTGGACTTAT-----CGGAGGAACTTGGCGAATTTTGATTATATTTTGATGCCATTTTT---------------------------------------------------------------------------------------ATCTGAAT-----------------------------AAAATGTTCT-TT |
| droPer1 | super_1:10015828-10015916 - | TGTTGTGGACTTAT-----CGGAGGAACTTGGCGAATTTTGATTATATTTAGATTCCATTTTT---------------------------------------------------------------------------------------ATCTGAATAAAAT-GTTC--TT---------------TAGTTACGTT-GA |
| droWil1 | scaffold_180708:11841716-11841868 + | TGCAGATGCCACAT-----CGGAATTGTGAAGGGAAAATGGGTTATTTAGTTGCGTTAGTTTAACGAGGAATGAAGGG------------------------------TCCGTTGTATTTAATTACTTTTTT----GGTAC--ATTAGTTAATAAAAGGAAAC-AATTAATCAATTAA----CATTATAAACTCGTT-TT |
| droVir3 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droGri2 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |