dme-mir-12-as

dme-mir-12-as

Changes

This miRNA belongs to the mir-283, mir-304, mir-12, and mir-12-as cluster.
The reported yakuba ortholog reported in the 12-way alignment is wrong as shown in dme-mir-12.
A block of the 12-way alignment is missing. This is attributed to a multiz defect and does not reflect genuine genomic gaps.

Corrected alignment

dme-mir-12-as

Species	Coordinate	Alignment
dm3	chrX:15403491-15403594 -	TTAGTGCGATCCGTGCACGGCGTAGTATGACATAAGTACTGGTTGTTGGATTTAAGGCACACCAGTACCTGATGTAATACTCAACCGTACAGACGCT----G---CTCC-----------------TT-
droSim1	chrX_random:4024315-4024418 -	TTAGTGCGATCCGTGCACGGCGTAGTATGACACAAGTACTGGTTGTTGGATTTCAGGCACACCAGTACCTGATGTAATACTCAACCGTACAGACGCT----G---CTCC-----------------AT-
droSec1	super_73:137914-138017 -	TTAGTGCGATCCGTGCACGGCGTAGTATGACACAAGTACTGGTTGTTGGATTTCAGGCACACCAGTACCTGATGTAATACTCAACCGTACAGACGCT----G---CTCC-----------------AT-
droYak2	gnl\|ti\|369397274:327-428 -	---GTGCGATCCGTGCACGGCGTAGTATGACATAAGTACTGGTTGTTGGATTTAAGGCACACCAGTACCTGATGTAATACTCAACCGTACAGACGCT----G---CTCC-----------------TT-
droEre2	scaffold_4690:11630938-11631041 +	TTAGTGCGATCCGTGCACGGCGTAGTATGACATAAGTACTGGTTGTTGGTTTTAAGGCACACCAGTACCTGATGTAATACTCAACCGTACAGACGCT----G---CTCC-----------------TT-
droAna3	scaffold_12929:2898571-2898666 +	TTAGTGCGATCGGTGCACGGCGTAGTATGACATAAGTACTGGTTGTTGGATTAAAGGCACACCAGTACCTGATGTAATACTCAGCCGTACAGACGC---------------------------------
dp4	chrXL_group1a:977995-978098 -	TTAGTGCGATCAGTGCACGGCGTAGTATAACATAAGTACTGGTTGTTGGATTTAAAGCACACCAGTACCTGATGTAATACTCAGCCGTACAGACGCT----G---CTGG-----------------AT-
droPer1	super_26:1092636-1092739 -	TTAGTGCGATCAGTGCACGGCGTAGTATAACATAAGTACTGGTTGTTGGATTTAAAGCACACCAGTACCTGATGTAATACTCAGCCGTACAGACGCT----G---CTGG-----------------AT-
droWil1	scaffold_180702:1592742-1592840 +	TTAGTGCGATCCGTGCACGGCGTAGTATGACATAAGTACTGGTTGTTGGATTAAAGGCACACCAGTACCTGATGTAATACTCAACCGTACAGGCGCT----G---C-----------------------
droVir3	scaffold_12970:2049296-2049416 -	TTAGTGCGCCCACTGCACGGCGTAGTATGACATAAGTACTGGTTGTTAGTTAAATGGCACACCAGTACCTGATGTAATACTCAACCGTACAGACGCT----G---ATGCGGATGCTGATGCGGCTGTT-
droMoj3	scaffold_6359:3259767-3259875 -	TTAGTGCGCCCACTGCACGGCGTAGTATGACATAAGTACTGGTTGTTAGTTAATTGGCACACCAGTACCTGATGTAATACTCAACCGTACAGACGCT----G---ATGCTGATGC------------T-
droGri2	scaffold_14853:6951707-6951816 +	TTAGTGCGCCCACTGCACGGCGTAGTATGACATAAGTACTGGTTGTTGGTTAAATGGCACACCAGTACCTGATGTAATACTCAACCGTACAGACGCTTGTG-ATGCTGC-----------------TT-