dme-mir-1012
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chr3R | 22517517 | A | 3 | 0 | 0 | 0 | 0 | 0 | 0.4 | 0 | 0.6 | 0 | 15 | Genomic Error | 3' MOR |
Corrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:22687056-22687144 - | A--AATCCAAAAGAACGGTGGGTAGA-ACTTTGATTAATATTG-------------------------------C---TTGAAAAATATT--------------------------------------AGTCAA-----------A--GATTTTCC-CCATAGATTTATCAATTTCGG |
| droSim1 | chr3R:22517515-22517602 - | T--AATCCAAAAGAACGGTGGGTAGA-ACTTTGATTAATATTG-------------------------------C---TTG-AGAATATT--------------------------------------AGTCAA-----------A--GATTTTCC-CCATAGATTTATCAATTTCGG |
| droSec1 | super_13:1460550-1460637 - | T--AATCCAAAGGAACGGTGGGTAGA-ACTTTGATTAATATTG-------------------------------C---TTG-AGAATATT--------------------------------------AGTCAA-----------A--GATTTTCC-CCATAGATTTATCAATTTCGG |
| droYak2 | chr3R:23804845-23804934 + | C--AATCCAAAAGAACGGTGGGTAGA-ACTTTGATTAATATTG-------------------------------C---TTGCAAGATATT--------------------------------------AGTCAA-----------A-GG-TTTTTCCCCATAGATTTATCAATTTCGG |
| droEre2 | scaffold_4820:5353889-5353978 + | A--AATCCAAAAGAACGGTGGGTAAA-TCTTTGATTAGTATTG-------------------------------G---TTTCAATATATT--------------------------------------AGTCAA-----------A-TG-TTTTTCCCACTAGATTTATCAATCTTGG |
| droAna3 | scaffold_13340:16646757-16646843 + | C--GATATAAAAAAGCGGTAGGTTTC------AACCAAATTTC-------------------------------C----TTTGAGAGTTC--------------------------------------AGTTAA-------CTTTATA--TATTCT-TTTTAGCTTCACTAACTTCGG |
| dp4 | chr2:4781321-4781418 + | A--AATAATTCAGAGCGGTGGGTAGT-CTCTCA-TATATAGT---------TATAAAAG---------------A---ACGAACACCAGT--------------------------------------GGTTAA--------GCAATG--CATTTC-TTGTAGATTCATCAATTTCGG |
| droPer1 | super_19:478308-478405 + | A--AATAATTCAGAGCGGTGGGTAGT-CTCTCA-TATATAGT---------TATAAAAG---------------A---ACGAACACCAGT--------------------------------------GGTAAA--------GCAATG--CATTTC-TTGTAGATTCATCAATTTCGG |
| droWil1 | scaffold_181130:2629008-2629094 + | C--AATTTGTCAGAACGGTATGGT---------------AGTG------------CAAG----AAAGCCGAAATT-----------------------------------------------------CAAAAACACCCTAA---T-TGTAACAAT-TTGCAGATTTGTCAACTTTGG |
| droVir3 | scaffold_13047:12018101-12018191 - | C--GATCTAAAGAAACGGTACGGATT-G-TTTATTT-AAATG--------------------------------CTTTAT-----ATATT----------------------------------TATCTATAAGCTA--------T--CTTTTTGT-TTGCAGTTTCATTAACTTTGG |
| droMoj3 | scaffold_6540:29763927-29764041 + | C--GATTTAAAAAAACGGTGTGTAAA-TA-TGGATTATTATT---------TATAAATTATCGAAAACTTAACTTCTAAT-----GTTTT----------------------------------TATATTTATATTT--------T--CAACATAC-TCTCAGTTTCATCAACTTCGG |
| droGri2 | scaffold_14624:2192647-2192787 - | ATTGATATCAAGAAGCGGTACGTTCTACATTTGGTTGAACTATTCTTGAACTTGAGCCG---------------A---A---AAAACTTTAGCTGTATTTTAAACATTCTTTTTCAATCTCTTTTGTG---TGT-----------G-TGTTTTTAT-TTGCAGTTTCATTAACTTTGG |