| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:642193-642303 + | TTTGT---------------------------A-ACTCCAATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTCATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC |
| droSim1 | chr3L:290535-290645 + | TTTGT---------------------------A-ACTCCAATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTCATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC |
| droSec1 | super_2:662642-662752 + | TTTGT---------------------------A-ACTCCAATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTCATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC |
| droYak2 | chr3L:629639-629749 + | TTTGT---------------------------A-ACTCCAATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTCATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC |
| droEre2 | scaffold_4784:648329-648439 + | TTTGT---------------------------A-ACTCCAATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTCATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC |
| droAna3 | scaffold_13337:6520579-6520690 - | TTTGT---------------------------AAACTCCAATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTTATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC |
| dp4 | chrXR_group8:4603895-4604015 - | TTTGGGAC-------T-----ACTCCACCAAT---A---TATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTTATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC |
| droPer1 | super_29:844606-844726 - | TTTGGGAC-------T-----ACTCCACCAAT---A---TATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTTATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC |
| droWil1 | scaffold_180698:10172097-10172254 + | TTTTTTTCATACATTTT-------------------TTTGATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTCATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACAGAAAAAAAAAGAAGAAAAAAAAATAACGATCATCATCTTGCC |
| droVir3 | scaffold_13049:5805300-5805416 + | TTTGTGTG-------T-----CGTCT------A-TCTC---TGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTAT-TTCATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC |
| droMoj3 | scaffold_6680:4143306-4143408 + | CT--------------------------------------ATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTTTTTTATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATAACCACA--------------------------------------TTCC |
| droGri2 | scaffold_15110:13265206-13265333 - | TGTGCGTC-------TCTCTGTCTCCATCACT---A-CCTATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTCAGACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:18472019-18472126 + | A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTA-CACATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTACAAGCCGCATTT |
| droSim1 | chr2L:18160930-18161037 + | A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTA-CACATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTACAAGCCGCATTT |
| droSec1 | super_7:2097967-2098074 + | A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTA-CACATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTACAAGCCGCATTT |
| droYak2 | chr2R:4988819-4988926 + | A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTA-CACATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTACAAGCCGCATTT |
| droEre2 | scaffold_4845:5799401-5799508 - | A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTA-CACATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTACAAGCCGCATTT |
| droAna3 | scaffold_12916:2379166-2379273 + | A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGCAACTA-AGAATCGTACTATACAATGTGCTAGCTTTCTTTGCTTGACAATAAGCCGCATTT |
| dp4 | chr4_group3:3635640-3635746 + | A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTACTT--CAGATCGTACTATACAATGTGCTAGCTTTCTTTGCTTGACTATAAGCCTCATTT |
| droPer1 | super_1:5116219-5116325 + | A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTACTT--CAGATCGTACTATACAATGTGCTAGCTTTCTTTGCTTGACTATAAGCCTCATTT |
| droWil1 | scaffold_180708:11623134-11623240 + | AAAGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTATTCAATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTATAAGCCACA--- |
| droVir3 | scaffold_12963:18451337-18451441 + | A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTATTTA-TAGAGCATACTATACAGCGTGCTAGCTTTCTTTGCTTGACAATAAGCCGCA--- |
| droMoj3 | scaffold_6500:6184568-6184672 - | A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTACTTA-TAGACCATACTATACAGCGTGCTAGCTTTCTTTGCTTGACTATAAGCCGCA--- |
| droGri2 | scaffold_3792:132-239 + | A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTATCTA-TCTAGCATACTATACAGCTTGCTAGCTTTCTTTGCTTGACTATAAGCAGCATAG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:20487426-20487546 + | AAAGACC-----------------ATCCCAT--ATTCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATA-TTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCG----------------------------------G----AGTTGAAA |
| droSim1 | chr2L:20052694-20052814 + | AAAGACC-----------------ATCCCAT--CTTCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATA-CTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCG----------------------------------G----AGTTGAAA |
| droSec1 | super_18:365651-365771 + | AAGGACC-----------------ATCCCAT--CTTCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATA-CTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCG----------------------------------G----AGTTGAAA |
| droYak2 | chr2R:6842709-6842830 + | AAAGAAC-----------------ATCCCAC--CATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATA-CTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGTCATCG----------------------------------G----AGTTGAAA |
| droEre2 | scaffold_4845:3954268-3954372 - | AAGGACC---------------------------TCCAGCCT-GTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATA-CTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCG----------------------------------G------------ |
| droAna3 | scaffold_12916:6985813-6985928 + | AAATATC-------------------------AAGAGAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAAT-ATCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACTTCA----------------------------------A----GTTTAAAT |
| dp4 | chr4_group3:7845311-7845422 - | GGAAA--------------------------TCAGAAGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAAC-ATAAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACAGCG-----------------------------------------TCTACA |
| droPer1 | super_1:9292009-9292126 - | AAAGACGG-A-------------A-------TCAGAAGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAAC-ATAAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACATCG----------------------------------C------CTACAG |
| droWil1 | scaffold_180708:1845911-1846049 + | ATAGATGGTAGATATATATGTAG--------CTACTTGGCCTCTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATTAAATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGTCCGACATCA----------------------------------TCTACAATATAAT |
| droVir3 | scaffold_12963:13613413-13613527 - | TGTGC--------------------------TTACTTGGCCT-TTGAGAGTTCCATGCTTCCTTACATTCAATAGTATTCA-AATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAACATCA----------------------------------C----AAAAACAA |
| droMoj3 | scaffold_6500:24555167-24555325 + | TGGGTCTT-AAA--------TTGT-------TCATTGCGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATTTA-TATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAGCATCATACCAAACTGTAAAAAAAAACACATTATGAAATTG----TGTTTAAA |
| droGri2 | scaffold_15126:6250403-6250508 + | ATTGT--------------------------TTACTTGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATA-AATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAACATC------------------------------------------------ |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:2635213-2635319 - | C------CTC-----ATCAGTTTGCTCCACGTCTACCCTGTAGATCCGAATTTGTTTTATACTAGCT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATATCCATCGA---------- |
| droSim1 | chr3R:2666345-2666451 - | C------CTC-----ATCAGTTTGCTCCACGTCTACCCTGTAGATCCGAATTTGTTTTATACTAGCT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATATCCATCGA---------- |
| droSec1 | super_6:2726434-2726540 - | C------CTC-----ATCAGTTTGCTCCACGTCTACCCTGTAGATCCGAATTTGTTTTATACTAGCT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATATCCATCGA---------- |
| droYak2 | chr3R:7777990-7778096 + | C------CTC-----ATCACTTTGCTCCACGTCTACCCTGTAGATCCGAATTTGTTTTATACTAGTT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATATCCATCGG---------- |
| droEre2 | scaffold_4770:2882555-2882661 - | C------CTC-----ATCAGTTTGCTCTACGTCTACCCTGTAGATCCGAATTTGTTTTATACTAGCT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATATCCATCGG---------- |
| droAna3 | scaffold_13340:5417353-5417464 + | C------CTA-----TCCAGTTTGCTCCACGTCTACCCTGTAGATCCGAATTTGTTTTATACTAGTT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATTTCCATCGTAAA-----AT |
| dp4 | chr2:19739488-19739592 + | T------CTC-----A--AGTTTGCTCCACGTCTACCCTGTAGATCCGAATTTGTTTTACATTAGCT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATGTACAACGA---------- |
| droPer1 | super_3:2487675-2487785 + | TTTGGTTCTC-----A--AGTTTGCTCCACGTCTACCCTGTAGATCCGAATTTGTTTTACATTAGCT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATGTACAACGA---------- |
| droWil1 | scaffold_181089:12007310-12007419 - | --------------------TTTGTTCTACGTCTACCCTGTAGATCCGAATTTGTTTTATACTAGTTTTTAAGGACAAATTCGGTTCTAGAGAGGTTTAAGTGGTTCAATGTTCTACAAACAAACCAAA |
| droVir3 | scaffold_13047:6092057-6092155 + | --------------------TTTGTTCCACGTCCACCCTGTAGATCCGAATTTGTTGTACACTAGTT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTCTGTGGCTCATTGTCCAGCGA---------- |
| droMoj3 | scaffold_6540:16502892-16503003 + | T------GTCTAAGTTCCACTCTGTTCCACGTCTACCCTGTAGATCCGAATTTGTTGTACCATAGCT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTATGTGGCTCATTGTCCAGCGA---------- |
| droGri2 | scaffold_14906:11443552-11443654 + | T---------------TCACTTTGTTCCACGTCTACCCTGTAGATCCGAATTTGTTGTACACTAGCT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGCTCAATGCCCACCGA---------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:18471419-18471548 + | ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAT---------------------CA-ATGACA |
| droSim1 | chr2L:18160327-18160456 + | ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAT---------------------CA-ATGACA |
| droSec1 | super_7:2092721-2092850 + | ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAT---------------------CA-ATGACA |
| droYak2 | chr2R:4988205-4988334 + | ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAT---------------------CA-ATGACA |
| droEre2 | scaffold_4845:5800004-5800133 - | ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAT---------------------CA-ATGACA |
| droAna3 | scaffold_12916:2378756-2378885 + | ATACTCACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTTTATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAT---------------------CA-ATCGAA |
| dp4 | chr4_group3:3634738-3634867 + | ATACTTATATATGGACCATTAACAGAAACCCGTAATTCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAT---------------------TT-ATCACA |
| droPer1 | super_1:5115309-5115438 + | ATACTTATATATGGACCATTAACAGAAACCCGTAATTCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAT---------------------TT-ATCACA |
| droWil1 | scaffold_180708:11622810-11622939 + | ATAGTCACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGGCCAACAAAAT---------------------CGAAT--CG |
| droVir3 | scaffold_12963:18449830-18449980 + | ATACTCAAATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAGACATATAAAATATATTAACAAAA-ATGACA |
| droMoj3 | scaffold_6500:6185704-6185833 - | ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTTGGTTTTTGG-CAACAAA-G---------------------CA-AAGCAA |
| droGri2 | scaffold_15252:6427650-6427777 + | ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTTTATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAA-----------------------G-ACTACA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:21414566-21414695 - | TATACCATGAA----------------AT-------------CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATT--ATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACG--------AGCGG---------------------------------------------------------------------------------CGGACA-----G- |
| droSim1 | chr3R:21243636-21243765 - | TATACCATGAA----------------AT-------------CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTTACACTATATT--ATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACG--------AGCGG---------------------------------------------------------------------------------CGGACA-----G- |
| droSec1 | super_13:202504-202633 - | TATACCATGAA----------------AT-------------CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATT--ATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACG--------AGCGG---------------------------------------------------------------------------------CGGACA-----G- |
| droYak2 | chr3R:25064545-25064667 + | --------GAA----------------TT-------------GG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATT--ATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACG--------AGAGG---------------------------------------------------------------------------------CGGCCA-----G- |
| droEre2 | scaffold_4820:6627814-6627943 + | TATACCATGAA----------------AT-------------CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATT--ATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACG--------AGCGG---------------------------------------------------------------------------------CGGTCA-----G- |
| droAna3 | scaffold_13340:3670416-3670527 - | TA-------------------------------------------GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACG--------AGG----------------------------------------------------------------------------------------A-----G- |
| dp4 | chr2:21158113-21158302 - | TATCGA----ATTACATACGGCGTCGGATCGGAGCAGATGAGAG-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAATT--ATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACA--------AAGAGAAGGAGAAGCTACAAAGCTACAAAGCTACGGAAAAATGCT--------------------------------------------ACA-----G- |
| droPer1 | super_3:3932619-3932791 - | TATCGA----ATTACATACGGCGTCGGATCGGAGCAGATGAGAG-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAATT--ATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACA--------AAGAG-----------------CTACAAAGCTACGGAAAAATGCT--------------------------------------------ACA-----G- |
| droWil1 | scaffold_181130:14638697-14638859 + | TCCATCTAACA----------------AA-------------AG-AGAGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATAGTAAC--ATATTC--ATTTCGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCTGTGGCAACG--------AGCGGAAAACT--------------------------------CTACTTCTGATGATGATAATAATGATTCAA--------------GTCAA-----A- |
| droVir3 | scaffold_12855:6810247-6810376 - | TATATCGTCG-----------------AT-------------CGTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTACG--TTAAGC--AATTGGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAA------AAAGC---------------------------------------------------------------------------------CAGAAA-----A- |
| droMoj3 | scaffold_6540:25791543-25791693 + | TCTATTAT-------------------------------------AGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTAAA--TTAAGC--AATTGGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACC--------AGAAGAAATCTAA--------------------------------------------------------TCGAGTCGACTATGCGGCATACACAGAGG- |
| droGri2 | scaffold_14906:2964690-2964824 - | TATAT---TTA----------------AT-------------CGTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTTAA--TTAAGC--AATTGGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTTGCTAGCAACTAAAAAGCGAGCAG---------------------------------------------------------------------------------CGAGCA-----GC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:23468173-23468292 - | AGCCCGC-----------------------------------------------------------------------------------------GATG-ATGTAAGCTGGC-CTGTCCCTGGGTAAACTCCCAAGGATCAGGTGGAGATTGAATCC---CGATCCTTGGGTTTC------------------TGCTCTCGGGCAAGGTCAGTAGTGCCCGCGAAGGGCCC |
| droSim1 | chr3R_random:1114763-1114882 - | AGCCCGC-----------------------------------------------------------------------------------------GATG-ATGTAAGCTGGC-CTGTCCCTGGGTAAACTCCCAAGGATCAGGTGGAGATTGAATCC---CGATCCTTGGGTTTC------------------TGCTCTCGGGCAAGGTCAGCAGTGCCCGCGAAGGGCCC |
| droSec1 | super_22:111563-111682 - | AGCCCGC-----------------------------------------------------------------------------------------GATG-ATGTAAGCTGGC-CTGTCCCTGGGTAAACTCCCAAGGATCAGGTGGAGATTGAATCC---CGATCCTTGGGATTC------------------TGCTCTCGGGCAAGGTCAGCAGTGCCCGCGAAGGGCCC |
| droYak2 | chr3R:23018685-23018798 + | G------------------------------------------------------------------------------------------------ATG-ATGTAAACTGGC-CTGTCCCTGGGTAAACTCCCAATGATCCGGTGTACATTGAATTC---GGATCCTTGGGTTTG------------------AGCCCAAGGACAAGGACAGTAGTGCCCGCGAAGGGCCC |
| droEre2 | scaffold_4820:4569064-4569195 + | AGCCCGCGTAAGGTGTATA-----------------------------------------------------------------------------GATG-ATGTAAACTGGC-CTGTCCCTGGGCAAACTCCCAATGATGCGGTGTACATAGAATCC---CGATCCTTGGGCTTC------------------TGCCCACGGGCAAGGACAGTAGTGCCCGCGAAGGGCCC |
| droAna3 | scaffold_13340:19221720-19221830 + | GTGTATA-----------------------------------------------------------------------------------------GATG-ATGTGAGCTGTC-CTGTCCCTGGGAGG----------ATCACCTGTAGTATTAAATTAAATGGAACAAAGGTCTC------------------CCCCTAGGGGCAAGGACAGCATTGGCCACGA--GGCTC |
| dp4 | chr2:3822386-3822523 - | AGATGAT-----------------------------------------------------------------------------------------GATACATATAAGCTGATTCTCTCCCAGTGGCGGACACACGGCAGATGGTGGCTTTACCGATC---CGATAATTGAATTTTAACCAAAAGAAAACCACCTGCATTCGGGTGCCGCCCCT-GGGTCTGAG-AGGGCTG |
| droPer1 | super_7:528167-528304 + | AGATGAT-----------------------------------------------------------------------------------------GATACATATAAGCTGATTCTCTCCCAGGGGCGGATACACGGCAGATGGTGGCTTTACCGATC---CGATAATTGAATTTTAACCAAAAGAAAACCACCTGCTTTCGGGTGCCGCCCCT-GGGTCTGAG-AGGGCTG |
| droWil1 | scaffold_181089:3707083-3707253 - | CAAATGG--AAAGTGTATGGAGGCAAGAGTGTCCAGATTGCCTTGGCCAAATATTGGGATTATGCTCAATACCGATCCCACATAATTGTTAATTCGTTTA-GTATTATCTA-----------------TTATCTATTATTATTAT---------------------------------------GATTATTATCGAATTATTATTATTATTCTT-ATGATTATT-GAGATCC |
| droVir3 | Unknown | AGCTGAA-----------------------------------------------------------------------------------------ATTT-GTTTATACC----CTTT-CCAATGTTAAGCCCCTTGGAAAATGTA-----TGAATCT---CGTAACAT-------------------------------------------TCGTAACAAGATGTTCGCCA |
| droMoj3 | Unknown | AGCTGAA-----------------------------------------------------------------------------------------ATTG-GTTTATGCTC-----------------TTTCCCAAGCGTATAATGAATAC-------------------------------------------------CAAAGAAAATACCTAACACTCGTAAGAAG--- |
| droGri2 | Unknown | AGCTAGC-----------------------------------------------------------------------------------------CA-------------------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:13747594-13747712 - | TGT----------AT-------------------CGGAATT--------AA-------TTAGAAATTATATATTTAAGTAGTGGATACAAAGGGCGAT-TTG-ATAT-AAA--AGTGTCGCATTGTATGACCTACTTAACTAGCTGATTTTGTATCCCAACATAATA--G |
| droSim1 | chr2L:13506512-13506649 - | TGT----------CGGAATAAATATAATAATAATCGGAAAT--------AT-------TTAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGAT-TTG-ATAT-AAA--AGTATCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATTCCAACATAAAA--T |
| droSec1 | super_3:14439-14576 - | TGT----------CGGAATAAATATAATAATAATCGGAAAT--------AT-------TTAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGAT-TTG-ATAT-AAA--AGTATCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATTCCAACATAAAA--T |
| droYak2 | chr2L:10159916-10160031 - | TATGCTTCGAAGTTTTAA------------------------------------------AAAAATTATATATTTAAGTAGTGGATACAAAAGGCGAT-T-G-ATAT-AAA--AATGTCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATCCCAACTTA------ |
| droEre2 | scaffold_4929:11719022-11719139 + | TCT----------AT-------------------ATT----AATTG----A-------T-CAAAATTATATATCTAAGTAGTGGATACAAACGGCGAT-TTG-GTAT-AAA--AATGTCGCATTGTATGACCTGCTTAACTAGCTGATTTTGTATCCCAACGTACAA--A |
| droAna3 | scaffold_12943:1815398-1815512 - | TCA----------TA-----------------------AATATCTGTGCAA-------A-CTAAATCATGTGTTTAAGTAGGCAATACAT-GGGCGAC-TAA-ATAA-AAT--ATACTCGCAATGTATAGCCTACATAACTAGTTGATTTTTGCAAGCATC--------C |
| dp4 | chr4_group1:1722923-1723028 + | CCT----------CTCAA------------------------------------------AATAATCGGGCACCTAAGTAGTTGATACAA-GGGCGAT-AAT-GTAAAAGA--ACTTTCGCATTGTGTGACCTACTTAAATGCTCGATTGTTTCAAGCAACCT------- |
| droPer1 | super_5:3483460-3483570 - | CCT----------CTCAA------------------------------------------AATAATCGGGCACCTAAGTAGTTGATACAA-GGGCGAT-AAT-GTAAAAGA--ACTTTCGCATTGTGTGACCTACTTAAATGCCCGATTGTTTCAAGCAACCTCTAA--A |
| droWil1 | scaffold_180772:545437-545562 + | TCA----------TT--------------------TG----ATCTGGTCAT-------TGAAAAATGTTACACTTAAGTAGTTAATACAA-TGGCGAT-TCGTATTC-CATTGTACATCGCATTGTGTGAGTTACTTTGTTGAGAGATTTTTCCAAACAACAAGATAATC |
| droVir3 | scaffold_12723:5043888-5043982 - | GCA----------AT---------------------------------------------GAAAATTGAACGCTTAAGTAGTTAATACAA-GGGCGAGTTTT-TTC----T--TGCATCGCATTGTGTGACCTACTTAAATGACAAATTTTCA--AG--AC--------A |
| droMoj3 | scaffold_6500:16664711-16664807 + | TGA----------T----------------------------------------------GAAAATTCAGCACTTAAGTAGTTGATACAA-AGGCGAA-TTT-AT-T-AAA--TTTATCGCATTGTGTGAGCTACTTAAATGACAGATTTTTA-T-AGTAC--------G |
| droGri2 | scaffold_15126:8057211-8057331 - | TGT----------AA------------------------ATATTTATAATCACTGTATT-GAAAATTTAACACTTAAGTAGTTGATACAA-GGGCGAGTTTC-ATA----A--AGTATCGCATTGTGTGACCTACTTGAATGAGAGATTTTTA--AGATACT--GTA--A |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:17448204-17448308 - | AGATCTAT--GTGAGGCGC-ACTTGTCAAGAACTTTCTCTGTGACCCGCGTGTACT------------TAAAAGCCGCATCACAGTCTGAGTTCTTGCTGAGTGC-GAAATCCTCGAAGCA------------------------ |
| droSim1 | chr3R:4022563-4022667 + | AGATCTCC--ATGAGGCGC-ACTTGTCAAGAACTTTCTCTGTGACCCGCGTGTACT------------TAAAAGCCGCATCACAGTCTGAGTTCTTGCTGAGTGC-GAAATCCTCGAAGCA------------------------ |
| droSec1 | super_6:4043853-4043957 + | AGATCTCC--ATGAGGCGC-ACTTGTCAAGAACTTTCTCTGTGACCCGCGTGTACT------------TAAAAGCCGCATCACAGTCTGAGTTCTTGCTGAGTGC-GAAATCCTCGAAGCA------------------------ |
| droYak2 | chr3R:6285759-6285863 - | AGTTCTCC--ATGAGGCGC-ACTTGTCAAGAACTTTCTCTGTGACCTGCGTGTACT------------TAAAAGCCGCATCACAGTCTGAGTTCTTGCTGAGCGC-GAAATCCTCAAAGCA------------------------ |
| droEre2 | scaffold_4770:4217167-4217271 + | AGATCTCC--ATGAGGCGC-ACTTGCCAAGAACTTTCTCTGTGACCTGCGTGTACT------------GAAAAGCCGCATCACAGTCTGAGTTCTTGCTGAGCGC-GGAATCCTCGAAGCA------------------------ |
| droAna3 | scaffold_13340:5675670-5675780 + | ATCTCTA-ATATGAGGCGC-ACTTGCCAAGAACTCTCTCTGTGACTTGTGTCCTTTTT--TT------CGAAACTCACATCACAGTCTGAGTTCTTGCTGAGAGCGGGAATCCTCCAATCG------------------------ |
| dp4 | chr2:23857524-23857651 - | AACACTCGATTTGAGGCCC-TCTTGTCAAGAACTTATTCTGTGACCTGCGTGACATTT--------------AGCCACATCACAGTCTGAGTTCTTGCTGAGCGT-GAACT-CGCCAACCAACATGAGTGAATAGCCCCCAAAAA |
| droPer1 | super_3:6634087-6634214 - | AACACTCGATTTGAGGCTC-TCTTGTCAAGAACTTATTCTGTGACCTGCGTGACATTT--------------AGCCACATCACAGTCTGAGTTCTTGCTGAGCGT-GAACT-CGCCAACCAACATGAGTGAATAGCCCCCAAAAA |
| droWil1 | scaffold_181089:8479022-8479138 + | ACAGCAAA--GAGAAGCCCTTCTTGTCAAGATCTCTCTCTGTGACCTGCGTGAGATTT--ATCATATATGAAAACCGCATCACAGTCTGAGTTCTTGCTGAGCGGTGAGCTAAGCAAGACA------------------------ |
| droVir3 | scaffold_13047:6338937-6339046 + | GGTTTTA---TTGAAGCGC-ACTTATCAAGAACTTTTTCTGTGACTTGCGTGAACTCTTATA------TGCAAACCGCATCACAGTCTGAGTTCTTGCTTAGCGC-GCACTTCGCACAGCA------------------------ |
| droMoj3 | scaffold_6540:1740109-1740221 - | CGCATTCGATTTGAAGCGC-ACTTAACAAGAACTTTTTCTGTGACCTGCGTGAATTCCTATA------TGCAAACCGCATCACAGTCTGAGTTCTTGCTTAGCGC-GCACTTCGCACAGCA------------------------ |
| droGri2 | scaffold_14906:11659470-11659581 + | CGAATTCGAAATGAAGCCC-ACTCGTCAAGAACTCTCTCTGTGACTTGCGTGAACTTTCATG------TGAAAATCGCATCACAGTCTGAGTTCTTGCTGAGCGC-GCT-TTCGCACCACA------------------------ |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:15403491-15403594 + | AA-----------------GGAG------CAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCTTAAATCCAACAACCAGTACTTATGTCATACTACGCCGTGCACGGATCGCACTAA |
| droSim1 | chrX_random:4024315-4024418 + | AT-----------------GGAG------CAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCTGAAATCCAACAACCAGTACTTGTGTCATACTACGCCGTGCACGGATCGCACTAA |
| droSec1 | super_73:137914-138017 + | AT-----------------GGAG------CAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCTGAAATCCAACAACCAGTACTTGTGTCATACTACGCCGTGCACGGATCGCACTAA |
| droYak2 | gnl|ti|371645083:614-718 + | AA-----------------GGAG------CAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCTTAAATCCAACAACCAGTACTTATGTCATACTACGCCGTGCACGGATCGCACTAA |
| droEre2 | scaffold_4690:11630938-11631041 - | AA-----------------GGAG------CAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCTTAAAACCAACAACCAGTACTTATGTCATACTACGCCGTGCACGGATCGCACTAA |
| droAna3 | scaffold_12929:2898571-2898667 - | -------------------------------GCGTCTGTACGGCTGAGTATTACATCAGGTACTGGTGTGCCTTTAATCCAACAACCAGTACTTATGTCATACTACGCCGTGCACCGATCGCACTAA |
| dp4 | chrXL_group1a:977995-978098 + | AT-----------------CCAG------CAGCGTCTGTACGGCTGAGTATTACATCAGGTACTGGTGTGCTTTAAATCCAACAACCAGTACTTATGTTATACTACGCCGTGCACTGATCGCACTAA |
| droPer1 | super_26:1092636-1092739 + | AT-----------------CCAG------CAGCGTCTGTACGGCTGAGTATTACATCAGGTACTGGTGTGCTTTAAATCCAACAACCAGTACTTATGTTATACTACGCCGTGCACTGATCGCACTAA |
| droWil1 | scaffold_180702:1592742-1592841 - | ----------------------G------CAGCGCCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCTTTAATCCAACAACCAGTACTTATGTCATACTACGCCGTGCACGGATCGCACTAA |
| droVir3 | scaffold_12970:2049296-2049416 + | AACAGCCGCATCAGCATCCGCAT------CAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCATTTAACTAACAACCAGTACTTATGTCATACTACGCCGTGCAGTGGGCGCACTAA |
| droMoj3 | scaffold_6359:3259767-3259875 + | AG------------CATCAGCAT------CAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCAATTAACTAACAACCAGTACTTATGTCATACTACGCCGTGCAGTGGGCGCACTAA |
| droGri2 | scaffold_14853:6951707-6951816 - | AA-----------------GCAGCATCACAAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCATTTAACCAACAACCAGTACTTATGTCATACTACGCCGTGCAGTGGGCGCACTAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:17566355-17566484 + | C-CCA----------------A--------------------GTGTCCTTCGTCATTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTATATGTATTTCCACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGCAGTTCTACAA-----ATTACTCATACCCAATA |
| droSim1 | chr2L:17270490-17270619 + | C-CCA----------------A--------------------GTGTCCTTCGTCATTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTATATGTATTTCCACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGCAGTTCTACAA-----ATTACTCATACCCAATG |
| droSec1 | super_7:1207305-1207434 + | C-CCA----------------A--------------------GTGTCCTTCGTCATTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTATATGTATTTCCACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGCAGTTCTACAA-----ATTACTCATACCCAATG |
| droYak2 | chr2R:3533165-3533294 - | C-CCA----------------A--------------------GTGTTCTTCATCATTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTATATGTATTTCCACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGCAGTTCTACAA-----ATTTCTCATACCCAATG |
| droEre2 | scaffold_4845:6683953-6684082 - | C-CCA----------------A--------------------GTGTCCTTCATCATTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTATATGTATTTCCACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGCAGTTCTACAA-----ATTACTCATACCCAATG |
| droAna3 | scaffold_12916:3309677-3309806 - | C-CAG----------------A--------------------GGCTTTTGTGTCGTTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTATATGTATTTCGACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGAAACTCTACAA-----ACTACAAATGACATATT |
| dp4 | chr4_group3:10867616-10867737 - | T-CTC----------------A--------------------GTGC---TCGTCGTTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTATATGTATTTCGACCATAAGGCACGCGGTGAATGCCAAGAGCGGACGAAACTCTACTA----------TCAAAAACAGCA |
| droPer1 | super_8:2078713-2078834 - | T-CTC----------------A--------------------GTGC---TCGTCGTTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTATATGTATTTCGACCATAAGGCACGCGGTGAATGCCAAGAGCGGACGAAACTCTACTA----------TCAAAAACAGCA |
| droWil1 | scaffold_180764:940183-940306 - | T-TCT---------------CA--------------------GA-------GTCGTTTGGTACGTTTTTCTCCTGGTATCCACTGCAGGCCTATATGTTATTTGACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGAAATTCTACAA-----AA-ACCAAAACGCAAAA |
| droVir3 | scaffold_12963:16493143-16493272 + | G-ACAACATT---------------------------CGTGAGTG----CCGTCGTTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTCTATGAATTTTGACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGAAACTCTACAA-----TTAACAAA-----AATA |
| droMoj3 | scaffold_6500:21419441-21419593 + | CGACAA--TTGCCCTGCGCTCAGCGTGCGGGACTCGCCGTGAGTG----ACGTCGTTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTCTATGAATTTTGACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGAAACTCTACAA-----AA--------TCCAACA |
| droGri2 | scaffold_15252:13906813-13906947 + | G-TGG----------------T--------------------GTGTGTGCCGTCGTTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTCTATGTTTTTTGACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGAAACTCTACACTTCCATTCAAATATAACCAGCA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:18472300-18472439 + | AAT-----ATTGGCATTGGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAGTA------------------------AAAAATAAGGC |
| droSim1 | chr2L:18161211-18161350 + | AAT-----ATTGGCATTGGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAGTA------------------------AAAAATAAGGC |
| droSec1 | super_7:2098251-2098391 + | AAT-----ATTGGCATTGGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAGTA-----------------------AAAAAATAAGGC |
| droYak2 | chr2R:4989099-4989238 + | AAT-----ATTGGCATTGGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAGTA------------------------AAAAATAAGGC |
| droEre2 | scaffold_4845:5799089-5799228 - | AAT-----ATTGGCATTGGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAGTA------------------------AAAAATAAGGC |
| droAna3 | scaffold_12916:2379461-2379598 + | AAT-----ATTGGTATTGGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAATA------------------------CAAAA--AAGA |
| dp4 | chr4_group3:3635996-3636136 + | AGT-----ATTGGTATGAGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTATAC-----------------------AAAAAAAAAAGC |
| droPer1 | super_2335:2506-2645 + | AGT-----ATTGGTATGAGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTATAC------------------------AAAAAAAAAGC |
| droWil1 | scaffold_180708:11623324-11623458 + | ATT-----ATTGGTATTAGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTGGCA------------------------AAA-----AGC |
| droVir3 | scaffold_12963:18451638-18451806 + | TATTACACATTGGTATTAGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAGTAACAAAAAAACAAAAACAATTACAAAAAAATAAGAA |
| droMoj3 | scaffold_6500:6184266-6184401 - | CAC-----ATTGGTATTAGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAGTA------------------------AAAAGTA---- |
| droGri2 | scaffold_15252:6428908-6429045 + | CAC-----ATTGGTATTAGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAGTA------------------------AAAAA--AAAC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:20616602-20616729 + | CAT--------TCGAGAA---------------------------TTTCCACC--------TGCAAC-ACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT-T-TCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAG-CCTA----------------GTGAAC |
| droSim1 | chr2L:20179920-20180047 + | CAT--------TCGAGAA---------------------------TTTGCACC--------TGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT-T-TTAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACATCGAAAG-CCGA----------------GCGAAC |
| droSec1 | super_18:496867-496993 + | CAT--------TCGAGA----------------------------TTTGCACC--------TGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT-T-TTAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACATCGAAAG-CCTA----------------GCGAAC |
| droYak2 | chr2R:6964793-6964921 + | TAT--------TCCAGAA---------------------------TTTCCTCC--------TGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT-TTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAGT-ACGA----------------GTAAAC |
| droEre2 | scaffold_4845:3836606-3836724 - | AT---------------------------------------------TTCCTC--------TGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT-T-CCTAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGCCAACTAAAT-TCGA----------------GTGAAC |
| droAna3 | scaffold_12916:7117508-7117634 + | T----------TCGTGAA---------------------------TGATTATC--------TGCAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATCT-TTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAAAGT-ACAA----------------GTGAAA |
| dp4 | chr4_group3:7699977-7700121 - | GAC--------GCGTGTG---------------------------TGCTTATG--------TACAACGGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTT-TATCAAGTATTTGGTCCCCTTCAACCAGCTGTAT-CAGTGGTTGATTCCAACAAAAA-ACAAAAGGCGCCAACAAATAATAAAG |
| droPer1 | super_1:9145698-9145865 - | TAT--------TTGTATGTGTAT--TT--GTATGTGACGCGTGTGTGCTTATG--------TACAACGGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTT-TATCAAGTATTTGGTCCCCTTCAACCAGCTGTAT-CAGTGGTTGATTCCAACAAAAA-ACAAAAGGCGCCAACAAATAATAAAG |
| droWil1 | scaffold_180708:2027542-2027651 + | -------------------------------------------------------------TACAAC-ACTGAATGTAGCTGGTTGACATCGGGTCAGATCTATTTATTTGAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATCCCAACAAAAA-GCAA-----------------TGGAA |
| droVir3 | scaffold_12963:13475783-13475914 - | CAA--------ACGAAGATATAT--ATTGCCAA--------TCGAATCACATT--------CACAAC-GCTGTGTGTAGTTGGTTGACATCGGGTCAGATCTATTT-CTGAAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGAAGCCAACAA------------------------------ |
| droMoj3 | scaffold_6500:24707638-24707772 + | CATGAAATAAATTGTGT------------------------TGTGTACTCAAACAAACATCCACAAC-GCTGTGTGTAGTTGGTTGACATCGGGTCAGATCTGTTT-T-TCGAGAATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAAGT---------------------------- |
| droGri2 | scaffold_15126:6389834-6389991 + | CAA--------ACAAAACTATATACATGATTAA--------TTTGAATTTATT--------TACAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTT-ATTCGAGTATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGTCAACAAGTGAACTTAAG-----AAC-AATAGTGAAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:11952744-11952864 - | TTACGATGGCGT------------CGC--------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAA--TCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATAAAA---------------------------------AGAG |
| droSim1 | chr2R:10688339-10688459 - | TTACGATGGCGT------------CGC--------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAA--TCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAA---------------------------------AGCG |
| droSec1 | super_1:9448872-9448992 - | TTACGATGGCGT------------CGC--------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAA--TCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAA---------------------------------AGCG |
| droYak2 | chr2R:17032219-17032325 + | CC---------------------------------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGACA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATTAAA---------------------------------AAAG |
| droEre2 | scaffold_4845:13905048-13905167 + | TTACGGTGGCGA--------------------------------------------CTCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGACA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAA---------------------------------GGGG |
| droAna3 | scaffold_13266:15447223-15447345 + | TTAAAGTGGCAA-------------------------------------------CCTGGAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAAA--TGCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATTTGTTCAGCAATCGAA---------------------------------GTGG |
| dp4 | chr3:16385856-16386036 - | TTAAGATGACAG------------CGACGG-----CCAAGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGATA--TCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATCAAACTGAAACGGAAAGTGTCTGTGAAAGGTGTCCTTAAAG |
| droPer1 | super_4:376928-377074 + | TTAAGATGACAG------------CGACGGCCACGCCACGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGATA--TCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATCA--------------------------------------- |
| droWil1 | scaffold_181141:1110993-1111093 - | TT----------------------------------------------------------------TAATGGCCACGTGTATTCTTATAGCTGTAACCTGTTA--TACAAAATGTTATTGCTTGAGAATACACGTAGTTAA-CTAGATTCGTTCAACGGGTCAA---------------------------------ACAA |
| droVir3 | scaffold_10468:1951-2100 - | GTACGTCGGAGCAGACACGACAGCGG---------ACACAACAAT-----TGGAAATTGGAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTAA-CAAGATTCTCTCAACGATCCAA----------------------------------TAA |
| droMoj3 | scaffold_6496:10610032-10610171 + | CAACGGA-GTGT------------GGA---------CAC---AAT-----TGGAAATTGGAATCGGCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTAG-CCAGATTCGCCCAACATGGCAATGGCA----------------------------ACAT |
| droGri2 | scaffold_15245:16918481-16918602 - | GGAGATTGGAAA-------------------------------------------ATTAAAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTAA-CAAGATTGCCTCAACGACTCCA---------------------------------ATAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:11243249-11243353 - | CCAAG----C------------------CAT--AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGAC-TATTA-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGA-AT-C--GCG----GCA----------------------GCG |
| droSim1 | chr3R:10237822-10237926 + | CCAAG----C------------------CAT--AGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGAC-TATTA-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGA-AT-C--TCG----GCA----------------------GCG |
| droSec1 | super_0:10705053-10705157 + | CCAAG----C------------------CAT--AGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGAC-TATTA-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGA-AT-C--TGG----TCA----------------------GCG |
| droYak2 | chr3R:15188577-15188681 + | CCAAG----C------------------CAT--AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGCC-TATTA-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGA-AT-C--TCG----GCA----------------------ACT |
| droEre2 | scaffold_4770:10769389-10769493 - | CCAAG----A------------------CAC--AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGAC-TATTA-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGA-AT-T--TAA----AAA----------------------GCG |
| droAna3 | scaffold_13340:12827611-12827739 - | ACAAGAATCCCCTCAAAAAAGGACGATCCATCGAGTTCTTACGTAACTCCTCAAAG-GGCTGTGAAATGTTGCCA--TTA-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGGGA-AT-C-GTCA----GAA----------------------AAC |
| dp4 | chr2:9824930-9825029 + | CC-------C------------------CA-----TACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCAT--TTA-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGG-AA-TGGCCA----GCA----------------------ATC |
| droPer1 | super_0:10660066-10660165 - | CC-------C------------------CA-----TACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCAT--TTA-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGG-AA-TGGCCA----GCA----------------------ATC |
| droWil1 | scaffold_181089:2143204-2143324 - | CCGTT----CCGGCAAAAGATG-------GA--ATTTCTTACGTAACTCTTCAAGGGGGTTGTGAAATGTTGCCATTTTATTCAACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAGTATT--CCT----GCA----------------------ACA |
| droVir3 | scaffold_13047:13335625-13335725 + | CCACT----C-----------------------AATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTTGCCG--TTA-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGA-AT-T--GCT----TAA----------------------ATT |
| droMoj3 | scaffold_6540:10568336-10568468 + | CTCCG----C-----------------CCATTCAATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTAGCCA--TTA-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGTGA-AT-T--GCTTTCAGCATTGTCCCATCCGTTTTGTGTCACTG |
| droGri2 | scaffold_14906:4357674-4357778 - | CCAAG----C-----------------CCACCCAATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTGGGTA--TTA-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGA-AT-T--GCTT---T-------------------------CA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:11243115-11243212 - | CACG-----------------------------------------------------TCTTTCTTATACCATGTCGTTAAAATGTTTGTGAACTTATGT---ATTC-ACAATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAA |
| droSim1 | chr3R:10237959-10238056 + | CGCG-----------------------------------------------------TCTTTCTTATACCATGTCGTTAAAATGTTTGTGAACTTATGT---ATTC-GCAATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAA |
| droSec1 | super_0:10705190-10705287 + | CGCG-----------------------------------------------------TCTTTCTTATACCATGTCGTTAAAATGTTTGTGAACTTATGT---ATTC-GCAATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAA |
| droYak2 | chr3R:15188722-15188819 + | CACG-----------------------------------------------------TCTTTCTTATACCATGTCGTTAAAATGTTTGTGAACTTATGT---ATTC-GCAATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAA |
| droEre2 | scaffold_4770:10769258-10769355 - | AACG-----------------------------------------------------TCTTTCTTATACCATGTCGTTAAAATGTTTGTGAACTTATGT---ATTC-GCAATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAA |
| droAna3 | scaffold_13340:12827469-12827566 - | --CA-----------------------------------------------------TCTTTCTTATACCATGTCGTTAAAAGGCTTGTGACCTTATGT---ATTTCGCAATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAC |
| dp4 | chr2:9825076-9825174 + | AGCA-----------------------------------------------------TCTTTCTTATACCATGTCGTTAAAATGTTTGTGACCTTATGT---ACTCTTGAATCATATCACAGCCATTTTGACGAGTTTGGGTACAGAAATTTCAA |
| droPer1 | super_0:10659921-10660019 - | AGCA-----------------------------------------------------TCTTTCTTATACCATGTCGTTAAAATGTTTGTGACCTTATGT---ACTCTTGAATCATATCACAGCCATTTTGACGAGTTTGGGTACAGAAATTTCAA |
| droWil1 | scaffold_181089:2143062-2143162 - | TGCA-----------------------------------------------------ACTTTCTTATACCATGTCGTTAAAATGTTTGTGACTTTATGTTGTGTCT-CTATTCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAA |
| droVir3 | scaffold_13047:13335778-13335875 + | TGCA-----------------------------------------------------ATTTTCTTATACCATGTCGTTAAAATGCCTGTGACCTTATGT---ATTT-TATATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAA |
| droMoj3 | scaffold_6540:10568509-10568606 + | TGCA-----------------------------------------------------ATTTTCTTATACCATGTCGTTAAAATGTCTGTGACCGTATGT---ATTC-ACTATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAA |
| droGri2 | scaffold_14906:4357489-4357639 - | CGTGCAGTCGCCGCCTCCTCCTGTTCCTCCTCCTTCTCCTTTGTGTGTTTCTTTCTTTCTTTCTTATACCATGTCGTTAAAATGCTTGTGACCTTATGT---ATTT-TATATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATGTCAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:8985248-8985347 + | TCTA---CCTCT------------------GCT------------------GTCTATTAACGCGTCAAAATGACTGTGAGCTATGTGG----ATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GACAG-CCAGCCT |
| droSim1 | chrX_random:2632466-2632565 + | TCTG---CCTCT------------------GCT------------------GTCTATCAACGCGTCAAAATGACTGTGAGCTATGTGG----ATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAG-CCAGCCT |
| droSec1 | super_34:345603-345702 + | CCTG---CCTCT------------------GCT------------------GTCTATCAACGCGTCAAAATGACTGTGAGCTATGTGG----ATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAG-CCAGCCT |
| droYak2 | chrX:12330556-12330651 - | CTTA---CCCCT------------------GCT------------------GTCTAGTAACGCGTCAAAATGACTGTGAGCTATGTGG----ATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGCTG-GCCAGT-----CT |
| droEre2 | scaffold_4690:6132295-6132393 - | TTTAAACCCCCT------------------GCT------------------GTCTATTAGCGCGTCAAAGTGACTGTGAACTATGTGG----ATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGC-C----C |
| droAna3 | scaffold_13047:797460-797571 + | TGTCCCGCTTCT------------------GCTT----CATTAC--CT---GTTTCCCAGCGCGTCGAAATGACTGTGACTTATGCGT----ATTTGA-TGTCATATCACAGCCATTTTGACGAGTTTGGTG-GACAGT-GAAAGT |
| dp4 | chrXL_group1e:7000785-7000885 - | GCTA---CTGCT------------------GCT------------------GCACATTTACGCGTCAAAATGACTGTGAGCTATGTGT----TTTTGA-TCTCATATCACAGCCATTTTGACGAGTTTGATG-TGCAGTCCCACTC |
| droPer1 | super_13:1553253-1553353 + | GCTA---CTGCT------------------GCT------------------GCACATTTACGCGTCAAAATGACTGTGAGCTATGTGT----TTTTGA-TCTCATATCACAGCCATTTTGACGAGTTTGATG-TGCAGTCCCACTC |
| droWil1 | scaffold_180777:2053037-2053171 + | TCCC---CCAATGTACCTACCCCTGCAACTGCTGTGCTT---ACAACTGATGTCCATGGTCGCGTCAAAATGACTGTGAGCTATGTTAACCGGTCAGAAATTCATATCACAGCCATTTTGACGAGTTCGATG-GGCAT-AC---GA |
| droVir3 | scaffold_12970:9304312-9304422 + | TCTC---TCGCT------------------GCT---------GCCAATGCTCCATATTGGCGCGTCAAAATGACTGTGAGCTATGTTGTTGCATTTGCCATTCATATCACAGCCATTTTGACGAGTTTGATGTGGCAGC-CA---- |
| droMoj3 | scaffold_6473:13342549-13342650 - | TCCT---CTAAT------------------GCT------------------CCATATTTGCGCGTCAAATTGACTGTGAGCTATGTTT----ATGAGATTATCATATCACAGCCATTTTGACGAGTTTGATGTGGCAG-CCACCAA |
| droGri2 | scaffold_15203:306998-307104 + | TCG-------TT------------------GCT---------ATCAGTGCTCCATATTGGCGCGTCAAATTGACTGTGAGCTATGTTGTTGCAGTTGTAATTCATATCACAGCCATTTTGACGAGTTTGATGTGGCAGC-CA---- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:5441252-5441344 + | ACGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTATTAAATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA |
| droSim1 | chr2R:4072822-4072914 + | ACGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTATTAAATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA |
| droSec1 | super_1:3055916-3056008 + | ACGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTATTAAATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA |
| droYak2 | chr2L:18072267-18072359 + | ACGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTATTAAATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA |
| droEre2 | scaffold_4929:8915902-8915994 - | ACGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTATTAAATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA |
| droAna3 | scaffold_13266:183955-184047 - | ACGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTATTAAATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA |
| dp4 | chr3:15883112-15883203 + | ACGTACTGCATTC-ATGTGGGAGCGAGACGGGGACTCACTGTGCTTTTGAAGTAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA |
| droPer1 | super_4:878748-878839 - | ACGTACTGCATTC-ATGTGGGAGCGAGACGGGGACTCACTGTGCTTTTGAAGTAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA |
| droWil1 | scaffold_180700:3302349-3302441 + | ACGTACTGCAACCTATGTGGGAGCGAGACGAGGACTCACTGTGCTTTTTATATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA |
| droVir3 | scaffold_10324:225313-225405 + | ACGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTTTTATATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA |
| droMoj3 | scaffold_6496:2042842-2042934 + | ACGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGATTTTTATATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA |
| droGri2 | scaffold_15245:15401666-15401758 - | ACGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTTTTATATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:9216892-9217021 - | CTG--GGCTG--------ACCCGAG-----------GGTTGGCCGGTGCATTCGTACCCTTATCATTCTCTCGCCCCGTGTGCACTTAAAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAATTCATCAAACCAATACCCA--------TT |
| droSim1 | chr2R:7673827-7673955 - | CTG--GGCTG--------ACCCGAG-----------GGTTGGCCGGTGCATTCGTACCCTTATCATTCTCTCGCCCCGTGTGCATTTAAAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAATTCATCAAGC-AATCCCCA--------TT |
| droSec1 | super_1:6740004-6740132 - | TTG--GGCTG--------ACCCGAG-----------GGTTGGCCGGTGCATTCGTACCCTTATCATTCTCTCGCCCCGTGTGCATTTAAAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAATTCATCAAGC-AATCTCCA--------TT |
| droYak2 | chr2R:7742247-7742374 + | CTG--GGCTG--------ACCCGAG-----------TGTTGGCCGGTGCATTCGTACCCTTATCATTCTCTCGCCCCGTGTGCAT-TGAAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAATTCATCAAGC-AATCCCCA--------TT |
| droEre2 | scaffold_4845:16598085-16598213 + | CTG--GGCTG--------ACCCGAG-----------GGTTGGCCGGTGCATTCGTACCCTTATCATTCTCTCGCCCCGTGTGCATTTAAAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAATTCGTCAAGC-AATCCCCA--------GT |
| droAna3 | scaffold_13266:16524568-16524693 - | CCCAGTGCCG--------G--CGAG------------TCCGGCCGGTGCATTCGTACCCTTATCATTCTCGCGCCCCGTGTGCATAATGAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAATTCATCAGGT-TG--TCCA--------TC |
| dp4 | chr3:696696-696816 + | --G--GGTCG--------GCCCGGGGACTCCG----GGTCGACCGGTGCATTCGTACCCTTATCATTCTCGCGCCCCGTGTGCATTAAAAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAACTCATCA---------------------- |
| droPer1 | super_2:863138-863258 + | --G--GGTCG--------GCCCGGGGACTCCG----GGTCGACCGGTGCATTCGTACCCTTATCATTCTCGCGCCCCGTGTGCATTAAAAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAACTCATCA---------------------- |
| droWil1 | scaffold_181009:2073162-2073280 - | ACG------------------CGAAGAGTCAGTTAAAGCTGACCGGTGCATTCGTACCCTTATCATTCTCGCGCCCCGTGTGCATATCTAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAACTCAACA---------------------- |
| droVir3 | scaffold_12875:243286-243412 + | TTG--GGCT-----------------------------TTGGCCGGTGCATTCGTACCCTTATCATTCTCGCGCCCCGTGTGCATATCTAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAAGTCAACTAAC-TAAGTGCAGCAACTATTT |
| droMoj3 | scaffold_6496:5255786-5255918 - | AAT--GGCCAATCTGCCGT--TGGG-----------CATTGGCCGGTGCATTCGTACCCTTATCATTCTCGCGCCCCGTGTGCATATCTATACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAAGTCAACTAA---ATACATG--------CG |
| droGri2 | scaffold_15245:10719551-10719668 - | CCA--GCCTG--------CATATGG-----------TTTTGGCCGGTGCATTCGTACCCTTATCATTCTCTCGCCCCGTGTGGATAACTATACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAACTCATCAAA-------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:8564884-8565013 + | ACTT------------------------------------------GCCCTT-----------------------CAAAA---------C-GA-------ACTAA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCCAATCTACTAAAACA------- |
| droSim1 | chr3L:8005898-8006027 + | ACTT------------------------------------------GCCCTT-----------------------CAAAA---------C-GA-------ACTAA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTATCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCCAATCTACTAAAACA------- |
| droSec1 | super_0:844136-844265 + | ACTT------------------------------------------GCCCTT-----------------------CAAAA---------T-GA-------ACTAA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCCAATCTACTAAAACA------- |
| droYak2 | chr3L:3348658-3348787 - | ACTA------------------------------------------GCCCTT-----------------------CAAAA---------C-GA-------ACTAA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCCAATCTACTAAAACA------- |
| droEre2 | scaffold_4784:5482466-5482595 - | ACTA------------------------------------------GCCCTT-----------------------CAAAT---------C-GA-------ACTAA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTAGCCTTCGCCAATCTACTAAAACA------- |
| droAna3 | scaffold_13337:8074872-8075002 - | ACTC------------------------------------------GCCTCT-----------------------CCAAA---------CACA-------ACTAA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACTCTCGCCAATCTACTAAAATA------- |
| dp4 | chrXR_group3a:147689-147845 - | ACTA------------------------------------------GT---TAACCCTAACTCTCATCTGCCCACAAA--CCAACCCAAC-GA-------ACTAA-----------TTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCGGAAATCTACTAAACCC------- |
| droPer1 | super_23:151050-151206 - | ACTA------------------------------------------GT---TAACCCTAACTCTCATCTGCCCACAAA--CCAACCCAAC-GA-------ACTAA-----------TTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCGGAAATCTACTAAACCC------- |
| droWil1 | scaffold_180949:5214317-5214457 + | ACTT------------------------------------------GCCCT-----------CTCATCTGCCCACAAAAA---------C-GA-------ACTAA-----------TTGATGGTCCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGTCGG-AATCTACTAAAAAC------- |
| droVir3 | scaffold_13049:6215347-6215479 + | AC-------------------------------------------------------------------------CAAAT---------C-AA-------ACTACCCCCCACTCATCTAATGATTCCAGTAAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTGAAACTCTACTAAACCA------- |
| droMoj3 | scaffold_6680:4536880-4537026 + | AGCC------------------------------------------AC---------------------------CAAAATCAACCAAAC-TACCTATCCACTAC------CTCATCTAACGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGCTTAAACTCTACTAAAA-A------- |
| droGri2 | scaffold_15072:36258-36427 + | ACTACCAATAAAATAAAAATCCAACCAATCAACCAACCAACCAACTACCCA------------------------------------------------------------CTCATCTAATGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTGAAACTCTACTAAAAACAAATCAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:21567099-21567236 + | TTTGATCG-----C-----------------AATCCGTGTGTGCCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCA--TATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTCGAC----- |
| droSim1 | chr3L:20903305-20903442 + | TTCGATCG-----C-----------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCA--TATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTCGAC----- |
| droSec1 | super_11:1487328-1487465 + | TTCGATCG-----C-----------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCA--TATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTCGAC----- |
| droYak2 | chr3L:18945598-18945735 - | TTTGATCG-----G-----------------AATCCGTGAGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCA--TATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTCGAC----- |
| droEre2 | scaffold_4784:21221186-21221323 + | TTTAATCG-----G-----------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATAGCCA--TATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTCGAC----- |
| droAna3 | scaffold_13337:17070826-17070956 - | CCGAATCG-----A-----------------AATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCA--TATTCATAAATTCTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTA------------ |
| dp4 | chrXR_group6:2746028-2746170 - | CTCAATTG-----G-----------------AATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCG--TATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCTTAACAATAA |
| droPer1 | super_9:1042494-1042636 - | CTCAATTG-----G-----------------AATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCG--TATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCTTAACAATAA |
| droWil1 | scaffold_180727:1082196-1082335 - | TTTAATTA-----A---------TC------AATCTGTGTGTGCGCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACA-AGTCAAAAATTTATT-ATCATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGACGAAAT----- |
| droVir3 | scaffold_13049:17910638-17910773 + | CTTAATGG-----T-----------------TGTAAGCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATATATATATG--TAT-CGTAAATCTTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAAAACCTCAG-TATAAC----- |
| droMoj3 | scaffold_6680:23178993-23179110 + | ------------------------------------GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAATA------TTATCATAAGTTCTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAACACCTCAG-TTCAA------ |
| droGri2 | scaffold_10030:24062-24212 - | TATAACTATCGAGGAAATTTACATAAATGTGCTAAAGCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAAGACCTT--TA-TCGTAAATCTTCTACTGGCCTACTAAGTCCCAATATAATGGGAGTAAAACCCTCA------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:18022237-18022366 + | CCACG-----------------------------------------------TCCGGAA-----CCGAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTTA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAG-----C----------------------------------------------------------CAGCCATTGTTCCATC |
| droSim1 | chrX_random:4635946-4636075 + | CCACG-----------------------------------------------TCCGGAA-----CCGAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTTA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAG-----C----------------------------------------------------------CAGCCATTGTTCCATC |
| droSec1 | super_8:332193-332322 + | CCACG-----------------------------------------------TCCGGAA-----CCGAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTTA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAG-----C----------------------------------------------------------CAGCCATTGTTCCATC |
| droYak2 | chrX:16646312-16646441 + | CCATG-----------------------------------------------TCGCGAA-----CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTTA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAA-----C----------------------------------------------------------CAGCCATCGTCCCATA |
| droEre2 | scaffold_4690:8350125-8350254 + | CCACG-----------------------------------------------TCGCGAA-----CCAAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTTA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAA-----C----------------------------------------------------------CAGCCATCGTCCCACA |
| droAna3 | scaffold_13335:1603991-1604112 - | GC--G------------------------------------------------------------TTAACGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTTA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACCAATCAACTGACCA--C-------------------------------------------------CAG----------ATC |
| dp4 | chrXL_group3a:1970441-1970623 - | ATATG-----------------------------------------------T---GATTTAGCTCGATCGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGATTTA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATATTAGCATCAAA---ACTAAACAAACCAAAAAGGAAGTTGAACGCCTAATGCAATCGATGAGTGTTGGGTTGCTTCAG------TT---TC |
| droPer1 | super_11:2708510-2708698 + | ATATG-----------------------------------------------T---GATTTAGCTCGATCGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGATTTA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATATTAGCATCAAA---ACTAAACAAACAAAAAAGGAAGTTGAACGCCTAATGCAATCGATGAGTGTTGGGTTGCTTCAGT-TTCATTCCA-- |
| droWil1 | scaffold_181096:12033222-12033334 + | CAATC-----------------------------------------------GCAAAAG-----CATAACGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTTA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCAGAAAACGACCAG-------------------------------------------------------------------------------- |
| droVir3 | scaffold_12928:1257190-1257317 - | T---A-----------------------------------------------TATTTAA-----ACGAGCGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTCA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGACCAGAGAAACAGCGAAT-ATT----------------------------------------------------------TAACTATTTTTCC--- |
| droMoj3 | scaffold_6473:13732313-13732476 + | CCACATATACAGAGCATATATGTATATGCATATATCATACAAGTATATAGAATCCAGATCCATTGGGAACGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTCA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGATGCCAGAGAAGCAACA--------------------------------------------------------------------------------- |
| droGri2 | scaffold_15203:8453543-8453644 + | ----------------------------------------------------------------------GGAGCTTATTGGAGCTGCTGGCCACTGCACAAGATTAGATTCAAAAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGACCAGATA----ACAT-----C----------------------------------------------------------AAGCCAT--------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:17308091-17308220 + | AAATAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATA-TTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCA |
| droSim1 | chr3L:16646167-16646296 + | AAATAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATA-TTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCA |
| droSec1 | super_0:9359464-9359593 + | AAATAAATATTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATA-TTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCA |
| droYak2 | chr3L:16762572-16762701 - | AAATAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATA-TTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCA |
| droEre2 | scaffold_4784:16541302-16541431 - | AAATAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATA-TTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCA |
| droAna3 | scaffold_13337:8265335-8265463 + | CAAAATAT-TTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAAT-TCAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAACGAAGAGAACCAT--TTC |
| dp4 | chrXR_group6:9338098-9338227 - | ATCAAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATA-TCCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCAGCAACCAAA--ATC |
| droPer1 | super_35:387455-387584 + | ATCAAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATA-TCCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCATCAACCAAA--ATC |
| droWil1 | scaffold_180955:2086476-2086593 + | A---AAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATT-TCAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATAAGAATACA---------CCCAA--TAA |
| droVir3 | scaffold_13049:5991414-5991542 - | GTATAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATT-TCAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATGAGAATCCAACCCA-CAACCAAA--CAA |
| droMoj3 | scaffold_6680:4316890-4317021 - | AAACATATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTTTTAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATCCAACACAAA-GCCAAAATATA |
| droGri2 | scaffold_15110:13121815-13121944 + | TAACAAACATTTGGTGAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATT-TCAAAAACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATACAACACAAAAATCAAA--ACA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2RHet:1322818-1322960 - | TCCGATGACCCATGGCG----G--GAGAGGATTATGAAAGACAATTTGAAATTAAATATCTGTGT-GTGAAATTATT--------------TAAAAGATTAATTTCACGCGAAGATATTTAT----TTTTACATTTGTCCCTATAATAACCGGGGT----------------------------------------G---------------CCA---ACATACAT |
| droSim1 | chr2R:265657-265782 + | AGGC------------------A--------------------ATTTTCAATTAAATATCTGTGT-GTGGAATTATTAAAAACAATGAGTTCAAAGGTTTAGTTTCACGTAAAGATATTTATTTTG-TTTAAATTT-TCCCTAGAATAACCAGTAT----------------------------------------G---------------CCG---ACATAAA- |
| droSec1 | super_55:122657-122779 + | AAGT------------------A-------------------AACTTAAAATTATAAATATGTGT-GTGAAATTAATAAA--CGGTAAGTTCGAAAGTTTAGTTTCACGCGAAAGTATTTAT----TTTTACATTTGTCCATAGAATAACCGGGGG----------------------------------------G---------------CCA---ACATAAA- |
| droYak2 | chr2h_random:1837227-1837349 - | AAGA------------------C-------------------AACTTAAATTTTTATATCTGTGT-GGGAAATTAAGAAA--CAGTGAGTTCGAAAATTTAGTTTCGTGTAAAGTTATTTAT----TTCTGCATTTGTCCCTAGAATAACCGAGGT----------------------------------------C---------------CCA---ACATAAA- |
| droEre2 | scaffold_4845:21278391-21278511 + | CTCCATAACTCAACTT-ATCTT--AATCGGATTTTGAAGTGGCA---TACCT-CTAAATGTTTGTGGTGCAATTATC--------------TAAAAAACTGCATTCAAATTTAAAAATTTATTTTT-TTTACATTTTTTTGTA----------------------------------------------------------------------------------- |
| droAna3 | scaffold_13334:5190-5293 + | AAAA------------------AA-------TTAGTAAAAAAAATAATAAATAAAAAAAAATATG-GTGGGATTTTT--------------TAAAAGATATTTTTTATATGGCAATTGGT----------------------------------------------------------------AGTTAAATATTAG---------------TCT---TTTTAAGA |
| dp4 | Unknown_group_37:8363-8450 + | GGCAATGAGG--------------------------------------------------------------------------------TAGGAGGGACAATTTTGTAT-----------------------------TCTATAATTATCGTTAGACCTACGCAAAGGATACATTTTACTGCGGG----------T---------------TGT---ATATTTT- |
| droPer1 | super_5473:1216-1318 + | TATA------------------C----------------------------------GTGTGTAA-GTGGAACTATG--------------CAGGGGAATGATTTCACATGAAGAAAGTCGATTCG-CCTGTACC------TATTGCATTCC-TA-----------------------------AGCTGAGGTTT-A---------------AGC---TTTAACAT |
| droWil1 | scaffold_180772:5217896-5218034 + | GCCGTTGACCAGTGGCG----G--CG----------------CCAAAGTGC--ACATATTCTTGT-CAGAGTTAGCTGGATAGTATGTTCCTGAAAATTCAATTA-AAATTGAA-----------------------------AGAGGACTTG--------------------------------TTGCAATGAATTTTTTTTTAATATTTGTCTAGATTTCGACC |
| droVir3 | scaffold_291:1622-1745 - | AAAG------------------AA-------TCATTAGATAAATCTTTAAAATATAGATTTTTTT-TTACCATATTT--------------GTAATGATTTTTGGATTGCGAAATTTTTTAT----TTAAATTGTTAATTATATAATATATTAAAT----------------------------------------A---------------TTT---ATATATAT |
| droMoj3 | scaffold_6473:7010400-7010528 + | AAAGACAAAAAAAAAT-AAAAT--AA----------------AAAAAATAAACAAACAAAAGTGT-GTAA---------------AGAGTGCAATGCCAACAAATCATACGTAGATTTCTAT----ATTTACATATGTACATAAATATATATATGT----------------------------------------A---------------TGC---ACATACAT |
| droGri2 | scaffold_14906:12727535-12727642 + | TGCC------------------GAGAAGGG------------AAAACGAGAATACAATTTTGTTA-TATTATTTAATTTA--TCTTA-TCTTG------------------------------------TCCTTTTATTTGAAAGATAATTTGA------------------------------ATTTGAATAAATT---------------TAT---ATTTGTAT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:1831670-1831814 - | TGGAGAAGAGTGATATCGTTTAAGATGC---------TGTGAATATCCCGTTTTCTTAGCTTGGCAATAAAAT-ATTA------------------------------TTCACAGAAACTAGTAATTTACTT-----------CCAAGCTAACTGAAGGGGAT-ATTCAGTGCAACCACG--GACTAAAAATGCGTT-TG |
| droSim1 | chr2L:1818710-1818856 - | CGGAGCAGAGTGATATCGTTTGAGATGC---------TGTGAATATCCCGTTTTCTTAGCTTGGCAATAAAAT-ATTA------------------------------TTCACAGAAACTAGTAATTTACTT-----------CCAAGCTAACTGAAGGGGATTATTCAGTGCAACATCG--GACTAAAAATGCTTTTTG |
| droSec1 | super_14:1778365-1778510 - | CGGAGCAAAGTGATATCGTTTGAAATGC---------TGTGAATATCCCGTTTTCTTTGCTTGGCAATAAAAT-ATTA------------------------------TTCACAGAAACTAGTAACTTACTT-----------CCAAGCTAACTGAAGGGGAT-ATTCAGTGCAACCACG--GACTAAAAATGCTTTTTG |
| droYak2 | chr2L:1804987-1805119 - | CGGAGCAAACTGATGTCGTTTAGGATGC---------TGTGAATATCCCATTTTGTTAGCTTGGCAATAAAAT-ATTG------------------------------TTGATTGAAACTAGTAATTTACTT-----------CCAAGCTAACTGAAGTGGAT-ATTC--TA------------CAACAAATGGGTT-TT |
| droEre2 | scaffold_4929:1878584-1878709 - | CGGTG-----TGATTCTGCTTAAGGTGC---------TGTGAATATCCCATTTTCTTAGCTTGGCAATAAAAT-ATTA------------------------------TTCATCGA-ACTAGTAATTTAATT-----------CCAAGCCAACTAAAGGGGAT-ATTCACTG---------------CAAATGCATT-TG |
| droAna3 | scaffold_12916:15757494-15757644 + | CGTAGAAGCTT-AC-----TAGTTC--------------------------------TGTTTGGTAATAAAGT-TATTCTTTTTTATCTCAAAATGACTCACGTTTTTTTTTTCGA-ATCATTAAATAACATTTATATTTTCCCTAAGC-------CCTGAAT-ACTTATTATAAAAAAGACGATTATAAAAGTATA-TG |
| dp4 | chr4_group3:8561836-8561913 - | TGTTGTGGACTTAT-----CGGAGGAACTTGGCGAATTTTGATTATATTTTGATGCCATTTTT---------------------------------------------------------------------------------------ATCTGAAT-----------------------------AAAATGTTCT-TT |
| droPer1 | super_1:10015828-10015916 - | TGTTGTGGACTTAT-----CGGAGGAACTTGGCGAATTTTGATTATATTTAGATTCCATTTTT---------------------------------------------------------------------------------------ATCTGAATAAAAT-GTTC--TT---------------TAGTTACGTT-GA |
| droWil1 | scaffold_180708:11841716-11841868 + | TGCAGATGCCACAT-----CGGAATTGTGAAGGGAAAATGGGTTATTTAGTTGCGTTAGTTTAACGAGGAATGAAGGG------------------------------TCCGTTGTATTTAATTACTTTTTT----GGTAC--ATTAGTTAATAAAAGGAAAC-AATTAATCAATTAA----CATTATAAACTCGTT-TT |
| droVir3 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droGri2 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:10222106-10222238 - | TCCAGTG-------------------------------------------------------------------------CATCCTACGGATGTCGAGCAGTACACGTA---TTATCTGCAG------CTGCAGATGCAAATGTATATGTATCTGTATCTG------TATCT--GCAGTAT-TGC-----AGTA-------TCGCTGCTTTATTCATATCCATG-------AGACGCGTCGCG |
| droSim1 | chr3R:11233896-11234028 + | GCCAGTG-------------------------------------------------------------------------CATCCTACGGATGTCGAGCAGTACTCGTA---TTATCTGCAG------CTGCAGATGCAAATGTATATGTATCTGTATCTG------TATCT--GCAGTAT-TGC-----AGTA-------TCGCTGCTTTATTCGTATCCATG-------TGACGCGTCGCG |
| droSec1 | super_0:11818438-11818570 + | GCCAGTG-------------------------------------------------------------------------CATCCTACGGATGTCGAGCAGTACTCGTA---TTATCTGCAG------CTGCAGATGCAAATGTATATGTATCTGTATCTG------TATCT--GCAGTAT-TGC-----AGTA-------TCGTTGCTTTATTCGTATCCATG-------TGACGCGTCGCG |
| droYak2 | chr3R:16218838-16218961 + | TCCAGTG-------------------------------------------------------------------------CATCCTACGGATGCCGAGCTGC------G---TTATCTGCAG------CTGCAGATGCAAATGTATCTGTATCTT--TCAG------TAT-T--GCAATGT-TGC-----AGTA-------TCTTTGCTTTATTCGTATCCGTG-------TGACGCGTCGCG |
| droEre2 | scaffold_4770:9756449-9756546 - | TCCAGTG-------------------------------------------------------------------------CATCCTACGGATGCCGAGCAT----C--G---TTATCTGCAG------CTGCAGATGCAAATGTA------------TCTG------TATCT--GCAGTAC-GGC-----------------------------TGTATCCGTG-------TGACGCGGCGCG |
| droAna3 | scaffold_13117:2846333-2846460 - | GTA----------------------------------------------------------------------------------------TCTCGAGATGCATCTGTAAGAGTATCTGCAT------CTGCAAATGTATCTGTATCTGTATCTGTATCTG------TATCT--GTATCTG-TGC-----AAGACTTGCCACCTCTCCTTTTCTCCTTTTCCTG-------AGCAAATGTCGC |
| dp4 | chrXR_group8:8158458-8158593 + | GCTAGTG-------------------------------------------------------------------------CCCACTACTGCCTTTGGCATGTATCTGTATCTGTACCCGTATCCGTATCCGTATCCGTTACTGTATCTGTATCTGTATCTG------TAGCT--GCTCTGAATGC-----AGTA-------TATA---TTTCATCAAATTTTTG-------TA----CTCGCA |
| droPer1 | super_0:4124990-4125137 + | GTAGGGGATCAGGCATGGCCAGGGGCAGCGGCAACGGCAGGGGCAGGGGCAGGGGCAGCTTTTCCAGGCT-------GTGCATCCTACGGATGGCAGGCTGTAC----------------------------------AACCGTATCGGCAGCCGTATCGG------TATCG--G---------------------------------------TGTATCTGTG-------TGACGCGTCGCG |
| droWil1 | scaffold_181089:10073219-10073346 + | CCTGGTAGAGAACGT-----------------------TGGGG--GAGGGGGGGGTTAGTTTTCCAGGCTCGCTGCAAAACATCCTACGATGTGAAAATTGT------G---A---------------------------AGG------------CTACTGAAA--GCG-GT--GCAATGC-GAG-----------------------------GAGAGCGACG-------CAATGCGACGCG |
| droVir3 | scaffold_12928:2113057-2113188 + | GTATCTATATCTGTA----------------------------------------------------------------------TATG------TATCTGT------ATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTG------TATCT--GTAT------C-----TATAT------TTGCTT----CTTTAAATCCGCCTCTTTCGAGACATTTATCC |
| droMoj3 | scaffold_6654:2537235-2537365 + | TTCAGTGAATCTGTATCTGTATCTGTATCTGTATCTG----------------------------------------------------------------------------TATCTGTAT------CTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCG--TATCTGT-ATC-----------------TGTATCTGTATCTGTATCTG----------TATTTGTATCT |
| droGri2 | scaffold_14830:2155779-2155908 - | GCGA-TG-------------------------------------------------------------------------TATCT--CGTATCTCGGCGAGTACGTCGC---------GCAT------CCGTATCTGCAAATGTATCTCTATCTATAGCTG------TATCTGAGCAATGTATGTAGTATAGTA-------TCTGTTGTT--GGGGTTTTCATA-------TTGCTTGTGCTG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:3412130-3412266 - | TGGGGCAGTGGAGCT-----G-----------------------------------------------------CCTGCAT---AACGC---------TGTGGCTTTCCGCTTCTATTTTTCGTTCACTGCCTTGTGC----TTCGTT--------------------------------------------------------------------------GGAAAATCGGTGAGCTAAAAATAGAATTCGGTTGCCACGCTTCAAGGGAAATGAGGAAAATTA |
| droSim1 | zdo07f06.g1:327-468 + | TGGGGCAGTGGAGCT-----G-----------------------------------------------------CCTGCAT---AAGGC---------TGTGGCTTTCCGCTTCTATTTTTCGTTCACTGCCTTGTGCTTGCTTCGTT--------------------------------------------------------------------------GGAAAATCGGTGAGCTAAAAATAGATTTCGGTTGCCACGCTTCAAGGGAAATGAGGAAAATTA |
| droSec1 | super_2:3404661-3404801 - | TGGGGCAGTGGAGCT-----G-----------------------------------------------------CCTGCAT---AAGGC---------TGTGGCTTTCCGCTTCTATTTTTCGTTCACTGCCTTGTGCTTGCTTCGTT--------------------------------------------------------------------------GGAAAAGCGGTGAGCTAAAAATAGATTTCGGTTGCCACGCTTCAAGGGAAATGAGGAAAATTA |
| droYak2 | chr3L:3959855-3959989 - | TGGGGCAGTGGGGCT-----G-----------------------------------------------------CAT--AT---AAGGC---------TGTGGCTTTCCGCTTCTATTTTGTGCTCACTGTCTTGTGC----GGCGTT--------------------------------------------------------------------------GGAAAATCGGTGAGCTAAAAATAGATTTCGGTTGCCACGCTTCGTGGAAAATGAGGAAAATTA |
| droEre2 | scaffold_4784:6102142-6102274 - | TGGGGCAGTGGAGCT-----G---------------------------------------------------------CAT---AAGGC---------TGTGGCTTTCCGCTTCTATTTTGTGTTCACTGTCCTGCGT----TTCGTT--------------------------------------------------------------------------GGAAAATCGGTGAGCCAAAAATAGATTTCGGTTGCCACGCTTCGAGGAAAATGCGGAAAATTA |
| droAna3 | scaffold_13337:10031066-10031241 + | TGGGGGCAGGTGGTG-----GCAGGAGGTGGCCGGAGGTGGTGGTAGGTGGGTGGGGGTGGTGTATGTAGGGGGCCTGTA------------------TGTGGCTTTCCGCTTCTACC--------ATTTTTTTTTGT-------------------------------------------------------TG----------------GAGGGTTCAGTGGAAATTCGGCGAGCTAAAAATATAATTCGGTTGCCACGCTTC---GGAAA----GAGAATTA |
| dp4 | chrXR_group8:5510827-5511013 - | TGTGTGTGTGTGTCT-----GT-----------------------GTGTGTGTGTGTGT-GTGTGTGTGT----GTGGCAGGGTGACAGCACTCTCTCTAAGGCTTTCCGCTTTTCGT------TCTCTTTT---TGT-TG-T-TGTTGTTCTTTCTTTCGTTTTGGTGGAAATTTTC----------GTTGTATCTAAAAATAGACTTTTTGGGGTTCAAAGGAAATTT-------------------------------------------TGTGGGACAAAA |
| droPer1 | super_7263:1394-1409 + | TACGGGTGTGAGACT-----G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| droWil1 | scaffold_180955:1135974-1136099 - | TATGGCGATATTTTGTAGGTT-----------------------------------------------------TTGGC-A---ATGGT---------TGTGGCTTTCCGCTTCTATTCAGT----------------------CGCA------------------CGAAAAATTTTCTCGGTTTTTTCCCAT-----------------------------------------GTCTAAAAATAGATTT------ACACCC---AAAGTA---GAAAAACATAA |
| droVir3 | scaffold_13049:19660195-19660299 + | G------------------------------------------------------------------------------------------------------TTCTGCGCTAGCTTGTTCGGTTTGGTAACATGAGC----TTCATT--------------------------------------------------------------------------AGTGTATGCAATAATGGCAAACATTTTTTGCCTGCCAGGCCTCGGCGAGGACGATGACGACGA |
| droMoj3 | scaffold_6496:15371578-15371721 + | TGCAACATTGATGAA-----A-----------------------------------------------------TATGCATAATGAAAATGTGCCCTCA-GAGTTATCCACG------------------------------------------------------------ATTTTTCTACTTTTTTTTTATACCCTGAAC---------CCATTTTCAATGGGAAATCAGGGTATA------ATGGTTTTGTTGAAATGTATG---TAACA----GGGAGAAG |
| droGri2 | scaffold_15203:7704730-7704834 + | CAGAATAATAGAATG-----T-----------------------------------------------------ACTCACT---TCAGC---------TATGGCATACAGATTTGCTTTATT-TGCTTTTCGTTGTAC-------------------------------------------------------------------------------------------------------------TTTCTGTTTTCTCAATGTACATGAAAAAGACTGAATTT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:5343231-5343336 + | GAAAACTCACTCCTGAGCTGCTCCGAAAATATCATGAATA-CG----------ACAATTATGTGCACATCATTTAGTATACGTGATATTTTAGGAGCAGCTAAATTATATTTAAAGT |
| droSim1 | wcy63a10.b1:18-120 - | A---------------GTTGTTCCGAAAAAATCAATTTTAATGACAGGATGGGCAGATAATTGGGACATCATGTTGTATACGTAATATTTTAGGAGCAGCTCAATTATATTTAAAGT |
| droSec1 | super_0:16553595-16553710 - | GACAACTCACTCTTGAGCTGCTCCTAAAATATCACGTATA-CGACATGATGTCCCAATTACATGCACATCCTGTCGTATACGTGATATTTTAGGAGCAGCTCAATTATATTTAAAGT |
| droYak2 | chr3R:9394463-9394539 + | GGCAACCCAC--------------------------TCTAAT--------------GTAATTGACACATCATGTCGTATACGTGATATTTTGGGAGCAACGCAATTATATTTAAAGT |
| droEre2 | scaffold_4770:16257712-16257788 - | GGCAACTCAC--------------------------TCTAAT--------------ATAATTGTCACATAATGTCGTATACGTGATATTTGAGGAGCAAGTCAATTATATTTAAAGT |
| droAna3 | Unknown | --------------------------------------------------------------------------------------------------------------------- |
| dp4 | Unknown | --------------------------------------------------------------------------------------------------------------------- |
| droPer1 | Unknown | --------------------------------------------------------------------------------------------------------------------- |
| droWil1 | Unknown | --------------------------------------------------------------------------------------------------------------------- |
| droVir3 | Unknown | --------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | Unknown | --------------------------------------------------------------------------------------------------------------------- |
| droGri2 | Unknown | --------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2LHet:27321-27425 + | ACAATCGTACGTTCTGAGCGAGTTGAAGCGATAAAGCAGGTTGCAAACTGCTCTCTCGCTTTGCTCTT---------------------------------------------------------ACTTTATCGCTTAAACTCGCA-----ACTCGCTTC----------GCTCTCA |
| droSim1 | chr4:281112-281214 + | AAAATCGTACGCTCTGAGCGAGTTGAAGCAATAAAGCAGGTTGCAAACTGCTCTTTCGCTTTGCTCTC---------------------------------------------------------GCTATATCGCTTGAGCTCGCA-----ACTCGCTTC----------GCT--CA |
| droSec1 | super_30:85009-85111 + | AAAATCGTACGCTCTGAGCGAGTTGAAGCAATAAAGCAGGTTGCAAACTGCTCTTTCGCTTTGCTCTC---------------------------------------------------------GCTATATCGCTTGAGCTCGCA-----ACTCGCTTC----------GCT--CA |
| droYak2 | chrU:9061077-9061181 + | ACAATCGTACGCTCTGAGCGAGTTGAAGCGATAAAGCAGGTTGCAAACTGCTCTCTCGCTTTGCTCTC---------------------------------------------------------GCTTTATCGCTTGAGCTCGCT-----ACTCGCCTC----------GCTCTCA |
| droEre2 | scaffold_4784:23192819-23192904 - | ACTATCAGACGCTCTGAGCGAGTTGCAGCGATAATGCAGGTTGCAAACTGTTCTCT----------------------------------------------------------------------------CGCTTGAGCTCGCA-----ACTCGTTTC----------GCTCTCA |
| droAna3 | Unknown | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| dp4 | chr4_group4:3101286-3101457 + | AGCAT---GAGC-GTCCACGAGATCAAGCGATAAGACATTTGCAAAGCTACTCTCTTGCTTCGCTTGCACTCGTTGCTGTCTTCGCTATAACTTGTTTCCCGCTCTTCACTGTAAATCGTTTTGCAC-TCTTCGCTCAAACTAGCCGCGCTGCTCTCTTCGCTTATCTTTGCTCTCA |
| droPer1 | Unknown | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | scaffold_181143:687820-687924 + | ACACACGTATAACAGCAGCTGGATGAAGCGATAAAGCGA-TTCAGAATCGCTTTCTCGCAACTCGCTT------------------------------C--------------------------AACTTGTCGCTTTGGCTCTCT-----TCTCGCTTC----------GCTTGCA |
| droVir3 | Unknown | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | scaffold_6498:432956-433055 + | AACAC---ACTTTAT-CATGCGATTAAGCGAGAAAGCGA-TTCAGGAATGCTTTCTCGCAACTCGCTT---------------------------------------------------------AACTTCTCGCTTTGGGTCTCT-----TCTCGCTTC----------GCTTGCA |
| droGri2 | Unknown | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:22235261-22235434 - | ACTAAATGAC---A--CCACCGCGAACCACT---T--TGTGCC-----------------------------------------------------GCTGTTGCCTTTG----CA--------GTTGCTGTTTTCCATGTT---GCTAC-------------------------------------------------------------------------------TG-----------CGGCCAATTGTTGCGCATCAGCAACATCAACAAC------------------ATCAA--CA---ACAGCAGCAGCAACTGC---AGTAGCAG------C-ACTCGT-------------GATTCACTTTCGA-CT-CAATTCGTCGCTA- |
| droSim1 | chrX:16981360-16981475 - | ACTAAATGAC---A--CCACCGCGAACCACT---T--TGTGCC-----------------------------------------------------GC---------------------------------------------TGCTAC-------------------------------------------------------------------------------TG-----------CGGCCACTTGTGGCGCATCAGCAACATCAGCAAC------------------ATCGT-GCA---ACATC---------------------G------------------------------TTCAC-TTCGA-CT-CAGTTCGTCGTTA- |
| droSec1 | super_39:188007-188112 - | ACTAAATAAC---T--CCACCGCGAACCACT---T--TGTGCC-----------------------------------------------------GC---------------------------------------------TGCTAC-------------------------------------------------------------------------------TG-----------CGGCCACTTGTGGCGCATCAGCAACATCAGCAAC------------------ATCG-----------------------------------------------------------------TTCAC-TTCGA-CT-CAATTCGTCGTTA- |
| droYak2 | chrX:21599490-21599638 - | ACTAAATGGC---A--CCACCGCGAACCACT---T--TGTGTC-----------------------------------------------------GCTGTTGCCTCTG----CT--------GTTGCTGCTTTGCATGTT---GCTAC-------------------------------------------------------------------------------TG-----------TGACCACTTGTTGCGCATCAGCAACAGCAACGAC------------------A--------------------------GC---AACAGCAG------C-ACTTGT-------------GCTTCAC-TTCGA-CT-CGATT---CGTTA- |
| droEre2 | scaffold_4690:18518767-18518923 - | ACTAAATGAC---A--CCACCGCGAACCACT---T--TGTGTC-----------------------------------------------------GCTGTTGCC--TT----CT--------GTTGCTGCTTTGT-TGTT---GCTAC-------------------------------------------------------------------------------TG-----------CGACCACTTGTTGCGCATCAGCAACATCGACGAC------------------AGCAAAGCA---------------ACAGC---AGCAGCAG------C-ACTTGT-------------GCTTCAC-TTCTA-CT-CGATT---CGTTA- |
| droAna3 | scaffold_13417:1531274-1531445 - | ATCATT-----------------------CT---G--GATGAT-----------------------------------------------------GCTGTTGCAGCTT----CT--------CTTGCTTTTCTG----------C---------------CACATGGAGACGACA-----------------CCAAAAACAATAAC---------------------AACAACAATGGTACAAC---------AACAGTAGCAACAACAGCAAC------------------A-----------GCAACAGCAACAGTAGC---AGTAGCAGCAACGGT------G-------------GCAACACTTTCAAATT-CATTT--TCGAAAT |
| dp4 | chrXL_group1e:3403111-3403272 - | ACAGAGTGGC---ATGCAACTGCCAGCCACG---C--CCTCGA-----------------------------------------------------GC------------------------------AGCTCCG----------C---------------CTCAGGGAACT--CGCCGGATCTGTTATCCTTCCAAATGGAGCAAC---------------------TG-----------CAGCAGCAGC---AACAGCAGCAGCAGCAGCAACATCACTT---------------G--CAACAGCAGCAGCAGCAACACC---AGCAGCAG------C-A------------------------------------------------- |
| droPer1 | super_20:731421-731582 - | ATCGC------------------CAA----T---C--TG-------------------------------------------------------------TTGCGGCAGCAGTCCCAGTCCCAGTCGC---------------AGT---CGCAGT---------------------------------------------------------------------------------------CACAGCCCCTGCAGCAGCAGCAGCAGCAGCAACATCCTCAGCAACAGCAGCA-----------GCAGCAGCAACATCCTC---AGCAGCAGCAGCGGC-GCGACA-------------G------CTCCGA-CAGCAATTGCTCGCTG- |
| droWil1 | scaffold_181096:4169006-4169179 - | ACAACA--GCAACA--ACAAAGAGAGCAACAAAGTTGTATG-----------------------------------------------------------TTGCCTTTGCCTTCT-----------------TCGTGTGCTGCTGCTGCTGCTGT-------------------------------------------------------------------------CG-----------ATCGGGCTTTTTGGGCAGCAGAAACATCAGCAAC------------------ATTGC--CA---GCGACAGCAACAACAGC---AGCAGCAG------CAGCTTGC-------------AATTTTCTTTTTG-CT-C------TTGCTAT |
| droVir3 | scaffold_13324:2891413-2891591 + | ACAAAGCAAC---A--ACAACCACAATCACA---G--C-------------------------------------AGCAGCGCCAGCAGCAACA-----------------------------ATTGCAGTT-------------------------------------------GCCG-----------------------GCAAC---------------------TG-----------CAGCAACGGAAGCAGCAGCAGCAACAACAACAAC------------------AACAA--CAACAACAACAGCAACAACTGC---AGCAGCAG------C-ATTCGCATTGGATTAAACAG------CTTCGA-CTGCTATGCATTGGTA- |
| droMoj3 | scaffold_6680:19782481-19782647 + | GTAACT---------------------CAAT---T--TGTTTGGCGTTTGCATCTTAAATTCTCGTAAGCATGCCATGTGTGCCATCCTGCACAAAGC---------------------------TGCTGCTTTGC-TT-------------------------------------------------------------------------------------------------------------CGATTCAGCACCAGCAACAACAACAAC------------------AACAA--CA---ACAACAGCAGCAGCAGCAGCAACAGCAG------C--------------------AGTGGACATCCAA-CT-GAAT---------- |
| droGri2 | scaffold_15245:7434254-7434426 - | ACCAGATGAT---A--CCCACAAGCGTCACG--------------------------------------------------------------------------------------AACTCACCGCC---------------AGC---CGCTGGCTTGGCC-------------------------------CAAAATGGAGCAGCTGCTGTTGTTGTTGTTGTTGGTG-----------GTGGCAGTTCTGCTGCAGCAGCAGCAGCAGCAGC------------------ATCAA--CA---GCAGCAGTGGCAGCA-C---AGCAGCAG-----------------------------AGCAATTACAA-TT-CAATT--------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:11441440-11441545 + | ACAAAATTCACACTCGAAT-TTTTTTGGGATCTCTTTATAAAGCGTTTATTA---TTTATTTATTATGTTTTGTCGAGAGCTTTCAAAAA-ATT-CAGAAGACAACAACGCA |
| droSim1 | chrX_random:3203326-3203430 + | ACAAAATTCACACTCGAAT-TTTT-TGGGATCTCTTTATAAAGCGTTTATTATTATTTATTTATTATGTTTTGTCGAGAGCTTTCAAAAA-AGT-CAGAAG---ACAACGCA |
| droSec1 | super_36:155641-155745 + | ATAAAATTCACTCTCGAAT-TTTT-TGGGATCTCTTTATAAAGCATTTATTATTATTTATTTATTATGTTTTGTCGAGAGCTTTCAAAAA-AGC-CAGAAG---ACAACGCA |
| droYak2 | chrX:10720999-10721105 - | ACAAAATTCACACTCGAAT-TTTTTGGCAATCTGTTTATAAAGCGTTTATTA---TTTATTTATTATGTTTTGTCGAGAGCTTTCAAAAATACA-ACAAAATAGGAAAAAAA |
| droEre2 | scaffold_4690:3720646-3720750 - | ACAAAATTCACACTCGAATTTT---GGGTATCTCTTTATAAAGCGTTTATTA---TTTATTTATTATGTTTTGTCGAGAGCTTAAAAAAA-ATATGAAAAGACAACAACCAA |
| droAna3 | scaffold_13047:188962-189053 + | ACAAAATTCACACTCGCTT-TT---GGCCAAC--TCCATAAAGCGTTAATTA---TCTG---------GCATTCTGAGAGCCAAAAGCTA-AAT-CAAATTCGATCGGAGCG |
| dp4 | chrXL_group1e:1762210-1762257 + | ACAAAATTCACACTCGAAT-TT---GGGGATCGCGTAGCGAGG--------------------------------------------------------GG----GGGGCAA |
| droPer1 | super_18:601670-601716 + | ACAAAATTCACACTCGAAT-TT---GGGGATCGCGTAGCAAGGG-------------------------------------------------------------GGGGCAA |
| droWil1 | scaffold_180777:122952-122984 + | ATAAACTCAATACACGAAT-TTGGTACTGATTTC------------------------------------------------------------------------------ |
| droVir3 | Unknown | ---------------------------------------------------------------------------------------------------------------- |
| droMoj3 | scaffold_6500:22511787-22511827 + | TCC---------------------------------------------------------------------GTCAATCATCTCCTTAAA-ACT-CTAAAGCAAACCAAGCA |
| droGri2 | scaffold_15203:463820-463836 - | GTGAAATTCACACTCGA----------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:10956461-10956596 - | TATAA------------TGTGTGTG------------TGC-GCTATTATTAAAACCCCC----------------------------------------AAC----------GCTCACACACACACACA--GCCATGTGCATGG----AGCA-----AAAA-----A-------------CTATGGCCGTGT------------GTATTTGTGCGAGGCGTTGGCGTTCTGACC----AGCA------GAAGAGGAAGATGG |
| droSim1 | chr3R:10501806-10501941 + | TATAA------------TGTGTGTG------------TGC-GCTATTATTAAAACCCCC----------------------------------------AAC----------GCTCACACACACACACA--GCCGTGTGCATGG----GGCA-----AAAA-----A-------------CTATGGCCGTGT------------GTATTTGTGCGAGGCGTTGGCGTTCTGACC----AGCA------GAAGAGGAAGATAG |
| droSec1 | super_0:10986595-10986730 + | TATAA------------TGTGTGTG------------TGC-GCTATTATTAAAACCCCC----------------------------------------AAC----------GCTCACACACACACACA--GCCGTGTGCATGG----GGCA-----AAAA-----A-------------CTATGGCCGTGT------------GTATTTGTGCGAGGCGTTGGCGTTCTGACC----AGCA------GAAGAGGAAGATAG |
| droYak2 | chr3R:15471091-15471226 + | TATAA------------TGTGTGTG------------TGC-GCTATTATTAAAACCCCC----------------------------------------AAC----------GCTCACACACACACAGG--GCCGTGTGCATGG----GGCA-----AAAA-----A-------------CTATGGCCGTGT------------GTATGTGTGCGAGGCGTTGGCGTTCTGACC----AGAA------GAAGAGGAAGATAA |
| droEre2 | scaffold_4770:10485021-10485154 - | TATAA------------TGTGTGTG------------TGC-GCTATTATTAAAACCCCC----------------------------------------AAC----------GCTCACACAC--ACAGA--GCCGTGTGCATGG----GGCA-----AAAA-----A-------------CTATGGCCATGT------------GTATGTGTGCGAGGCGTTGGCGTTCTGACC----AGAA------GAAGAGGAAGATAA |
| droAna3 | scaffold_13340:6023187-6023339 - | TATAA------------TGTGTGTGTGTGTG--TGTTTGT-GCTATTATTAAAACCCCC----------------------------------------CTC----------GCAAGCACCC-CCCACT--GCCAC-TGCATAG----AGCAAAAAAAAAAAAAAAA-------------CTATAGTGGTGT------------GTG-GCAGGCGAGGCGTTGGCGTTTTGACC----AAAA------GCTGAAGAAGAGGA |
| dp4 | chr2:20937547-20937682 - | TATAA------------CGTGTGTGTGAGTG------TGT-GCTATTATTAAACTCCCT---------CCCTAA---------------------------------------CAC----G--CACACA--ACTATGT-TATG----------------TA-----A-------------GTGTGTGTGTGT------------GTGTGTGTGTGAGGCGTTGGCGTTTTGACC----AGAAGCTGAAGAAGAGGAAGAATA |
| droPer1 | super_3:3688114-3688249 - | TATAA------------CGTGTGTGTGAGTG------TGT-GCTATTATTAAACTCCCT---------CCCTAA---------------------------------------CAC----G--CATACA--ACTATGT-TGTG----------------TA-----A-------------GTGTGTGTGTGT------------GTGTGTGTGTGAGGCGTTGGCGTTTTGACC----AGAAGCTGAAGAAGAGGAAGAATA |
| droWil1 | scaffold_181130:7306738-7306938 + | CAAATGGTATGCGTCTATGTGTATGTGTGTGCCTGTGTGTGGCTATTATTAAAAATCCACACCTCCTACCCCAACCCCCCGTTACATATACACACAACCAATACATCCATACGCCCACACATACACATA--CATGAAAAGAAAA----GGA------AAAAAAAGAA-------------CT------------------------------ATGAGGCGTTGGCGTTCGTTCCGGGCACTA------CAAGAAGAAGAAGA |
| droVir3 | scaffold_13047:7645546-7645687 - | CATAT------------TGTACGTG------------TGT-GCTATTATTAAAATGCCA----------------------------------------CAC----------GCACGCACAC--ATAGAGACGGGGGGACACGGACACGGCA-----AAAAGAAAAACTATTCTC--------AGAGTGTGT------------GTGCGCCTACGAGGCGTTGGCGTTTTGGCT----AGAA------GAAGC--------A |
| droMoj3 | scaffold_6540:3604660-3604829 - | TATAT------------TGTATGTG------------TGT-GCTATTATTAAAATACCA----------------------------------------CAT----------GCACGCACACACAGAGA--GGCAGAGACACGGACACAGCA-----AAAAGAAAAACTATTTACAGTTGCTGCGACTGTGTGTATATACATATATGCGCCTACGAGGCGTTGGCGTTTCAGCA----AGCG------AGAGAGTGAGAGAG |
| droGri2 | scaffold_15245:14649244-14649349 + | AACAA----------------------------------------------------GC----------------------------------------AAC----------ACACACACACACACACA--CACACACGCA-------GACA-----AAGA-----A-------------ACACACACTCAC------------ATACATC-TTGATGTGTTCATATTTATGCCA---AGTC------AAACTCAAAAGCTT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:5068555-5068699 + | CGTATGTAT---------------------TATACATGTATGATCACATTGGCTTGTGGGCGTGG--CAC-TTCAATTGGGCTGACTTTGCCTGGCTGGAAAAGCGGCA-CCTAATTGAAATGC-CCGC---CGATCAGT-GCTCGATTACGAT------CGACACAAGCGACATT---TTCGT----------------- |
| droSim1 | zds89d09.b1:77-211 + | CATACGTACAT----------------------ACATGTATGATC-CATTGGCTTGTGGGCGCGG--CAC-TTCAATTGGGCTGACTTTGCCTGGCTGGAAAAGCGGCA-CCTAATTGAAATGC-CCGC---CAATC---------------------------------GACATT---TTCGTTTAATTTCGTTTCTAGC |
| droSec1 | super_5:3155468-3155580 + | CGTACAT--------------------------ACATGTATGATC-CATTGGCTTGTGGGCGTGG--CAC-TTCGATTGGGCTGACTTTGCCTGGCTGGAAAAGCGGCA-CCTAATTGAAATGC-CCGC---CAATC---------------------------------GACATT---TTCGT----------------- |
| droYak2 | chr2L:10456243-10456376 - | TATAC---------------------------------TATAAT--CATTGGCTTGTGGGCGTGG--CAC-TTCAATTGGTCTGACTTTGCCCGACTGGAAAAGCGGCA-CCTAATTGAAATGC-CCGCCA-CAATCAGT-GCTCGATCGTGAT------CGACACAAGCGACATT---TTCGT----------------- |
| droEre2 | scaffold_4929:5148425-5148554 + | TTTATG------------------------------------ATC-CATTGGCTTGTGGGCGTGG--CAC-TTCAATTGGTCTGACTTTGCCCGGCTGGAAAAGCGGCA-CCTAATTGAAATGC-CCGC---CAAACAGT-GCTCGACCATGAT------CGGCACAAGCGACATT---TTCGT----------------- |
| droAna3 | scaffold_12916:13706207-13706309 + | CATATG-----------------------------------------------TTGTGGGCGTGG--CAC-TTCAATTGGTCTAACTTTCCCGGAATGGTAAAGCAGTCACTTAATTGAAATGC-CCGC---CAATC---------------------------ACGAGCAACATTTTTTTCGT----------------- |
| dp4 | chr4_group4:1588263-1588389 + | TGTCTGTGTGCG----------------------------------CATTGGGTTG-GGGCGTGG--CAC-TTCAATTTGGC--GCTTTGCCTGGCTGTAAAAGCTGCA-ACTAATTGAAATGT-CCGC---CAATCAATTAAGCAA---TAAA------CAACATAAGCAACACT---TTCGA----------------- |
| droPer1 | super_10:591769-591895 + | TGTCTGTGTGCG----------------------------------CATTGGGTTG-GGGCGTGG--CAC-TTCAATTTGGC--GCTTTGCCTGGCTGTAAAAGCTGCA-ACTAATTGAAATGT-CCGC---CAATCAATTAAGCAA---TAAA------CAACATAAGCAACAAT---TTCAA----------------- |
| droWil1 | scaffold_180703:1359544-1359639 + | TTCACAC----------------------------------------ATTCGTTTTTGTCTATGG--TATTTTCAATTTGGCTC-CTTTATCTGGCTGAAAAAGCTGCA-ACTAATTGAAATGC-CCAT---TTAAC-------------------------------------TT---TATAT----------------- |
| droVir3 | scaffold_12963:10059299-10059444 - | CGTATGTGTGTGTGTGTGTGTGTCTGTGTCTGTGTTTGTGTGTGTGCTTTTGATTGAGAACGTTT--CAT-TTCAATTTGGC--GCTTTGCCTGGCTGGAAAAGCTGCA-TTTAATTGAAATGC-GCGTCGCTAAT-AA---TTC-------------------------AATAATT--TATTA----------------- |
| droMoj3 | scaffold_6500:1220428-1220559 + | TTTGAGT----------------------------------------ATCA-TTTTAGGGCGTGTTCCAT-TTCAATTTGGC--GCTTTGCCTGGCTGGAAAAGCTGCA-TTTAATTGAGATGC-GCGT---CGACATTTTATTCGATTACATTTAGTTTAATTACAAGAAATATT---TAAGC----------------- |
| droGri2 | scaffold_15252:11801593-11801729 + | TGTGTGTGTGTG--------CTTCTCTCTCTATCTCTGTATCTCTCTCTCTGGTTGAGGGCGTTC--CAT-TTCAATTTGGCGCTTTTTGTCTGGCTGGAAAAGCTGCACATTAATTGAAATGTCGCGTCGTTAATCAACT--------------------------------AAT---TT-TG----------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:1904318-1904465 + | AAGAGCGCAAAATGA--GT--------------------------------GCGCCG----GTGTGCGTGTGTGAGAGGCC--ATCGTAAAAGCCTTGTTTGCGTGCGGAATTTAACTGTTTTCTCGCCGTCTGCGAATTGCG-----------------GGGCACTCACACACGCATATTCAGCCGCA--------CATCT--GGGAAAATGGG |
| droSim1 | chrX:1343126-1343273 + | AAGAGCGCGAAATGA--GT--------------------------------GCGCCG----GTGTGCGTGTGTGAGAGGCC--ATCGTAAAAGCCTTGTTTGCGTGTGGAATTTAACTGTTTTCTTGCCGTCTGCGAATTGCG-----------------GGGCACACACACACGCATATTCAGCCGCA--------CATCT--GGGAAAATGGG |
| droSec1 | super_10:1689518-1689665 + | AAGAGCGCAAAATGA--TT--------------------------------GCGCCT----GTGTGCGTGTGTGAGAGGCC--ATCGTAAAAGCCTTGTTTGCGTGTGGAATTTAACTGTTTTCTTGCCGTCTGCGAATTGCG-----------------GGGCACTCACACACGCATATTCAGCCGCA--------CATCT--GGGAAAATGGG |
| droYak2 | chrX:6422544-6422691 - | AAGAGCGCAAAATGT--GT--------------------------------GCGCCG----GTGTGCGTGTGTGAGAGGCC--ATCGTAAAAGCCTTGTTTGCGTGTGGAATTTAACTGTTTTCTCGCCGTCTGCGAATCGGG-----------------GGGCACTCACACACGCACATACAGCCGCA--------CATCT--GGGAAAATGGG |
| droEre2 | scaffold_4644:1874871-1875018 + | AAGAGCGCAAAATGT--GT--------------------------------GCGCCG----GTGTGCGTGTGTGAGAGGCC--ATCGTAAAAGCCTTGTTTGCGTGTGGAATTTAACTGTTTTCTCGCCGTCTGCGAATTGGG-----------------GGGCACTTACACACGCACATACAGCCGCA--------CATCT--GGGAAAATGGG |
| droAna3 | scaffold_12929:1897894-1898023 + | AAGGGGGAGAGAGCA--GT--------------------------------TTGCAT----GTGTGCGATTTT-----GTG--GTCATAAAAGCTTTGTTTGCGTGTGGAATTTAACTGTTTTCTAGCCGTCTGCGAATTGGG-----------------GGGGGGGGG-------------GGCCATA--------CAAGC--TGGAAAATAGG |
| dp4 | chrXL_group1a:2576130-2576311 + | AAGAGGGAGAGATA-----GAGAGAGAGAATAATGGAGTGCTGGTGTATATGTACCTACATATGTACGTGTGGTTGA-GTA--CCCATAAAAGCCTTGTTTGCGTGCTAGTTTTAACTGTTTTTTCGGTGTTCTTGTGTTGGG-----------------CGGCACACACACCAGCGCCATTGGCTTTT--------CACAGGGCGAGAAGTAAG |
| droPer1 | super_28:1013167-1013344 + | AAGAGGGAGAGATA-----GAGAGAGAGAATAATGGAGTGCTGGTGTATATGTACCT----ATGTACGTGTGGTTGA-GTA--CCCATAAAAGCCTTGTTTGCGTGCTAGTTTTAACTGTTTTTTCGGTGTTCTTGTGTTGGG-----------------CGGCACACACACCAGCGCCATTGGCTTTT--------CACAGGGCGAGAAGTAAG |
| droWil1 | scaffold_181096:6994288-6994457 - | GAGGCCAAAA-GAGACAGT--------------------------------GCGATA----GAGAG--AGGTAGAGAGAACGTACAGAGAGAG-CTTGTTCTGGTTTGTAACTA-ATTTTCCCCCTCAAATGTAAGCATTTCGAATGCATGTGTGTGTACGTGTAATCACACACGCACACAAATAC-CACGTCATTACGAT---TTCCACATGGC |
| droVir3 | scaffold_12928:6459245-6459266 + | G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTA--------TTTCT--GTGCAAGTGTG |
| droMoj3 | Unknown | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droGri2 | scaffold_15203:11679615-11679698 + | -----------------------------------------------------------------------------------------------TTGTTTTCGCTTTTCATTT---TGTTTTACGATTAACTGTAAACTGCA-----------------G-----CCGGCCAACCATTTTCGAGCCCA-----------CTGGCAAAGAATGGG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:16472199-16472340 - | A----------------TGTGATATTTTTTTCACATTTGCCAT---------AATCTCCTTAAAATAGT-------AAAGGCTGTTATGCTTATTTTTG-TGTTTTTTACAAAACTGGCATTCCCGTCT--T-ACTTATTTTCAGAAAACTTACACCAAAG-TGCACAGATTGAAAAAA |
| droSim1 | chr2R:15133473-15133625 - | AGTAAAAAAGACAAAAATGTGAA------CTTCAAATTGCCAT---------AATCTC---AAAATAGTAAA-----AAGTCTGTTATGCTAATGTTTG-TGTGTTTAACAAACTTGGCATAACCGCTTTTT-ACTTATTTGCAGAAAACTAACCACAAAG-TGCACAGATTGAAAAAA |
| droSec1 | super_1:14026397-14026532 - | A----------------TGTGAA------CTTCAAATTGCCAT---------AATCTC---AAACTAGTAAA-----AAGTCTGTTATGCTAATG-TTG-TGTGTTTAACAAACTTGGCACAACCGCTTTTT-ATTTATTTGCAGAAAACTAACCACGAAG-TGCACAGATTGAAAAAA |
| droYak2 | chr2R:12723862-12724011 + | TTTG-----------------ATTCTGCATTAGAAATCGCCACCCAACTTTGATTTTTCTAGAAATATT-------TAAGTCTGTTCTGCTTAGATTTG-TGAATTTGACAAAATCTGCACAGCCGGCT--TAATGTATTTTTAGAAACTTAGCACCTTTTGTGTAAAGA---AAAAAC |
| droEre2 | scaffold_4845:10617439-10617588 - | TTTG-----------------ATTCTGCTTCTTAAATCGCCACCCAACTTATAGTATTCCAAAAATATT-------TAAGTCTGTTATGCATACTTTTG-TGAGTTTGACAAAATGTGCACAACCGGCT--TACTGTATTTTTAGAAAACAAACACCTTAGTTGTAAAGA---ATAAAC |
| droAna3 | scaffold_13266:4132040-4132139 + | AATA-----------------AATAAAC-----AAAATTCTCA---------AATATT---TAAC--GTAAAAACTT--------------AATT-TTGTCGCGATATACAAATTTGGCGC------CA--AAACGTATTTTCATAAAATTTTA--------------------AGCTA |
| dp4 | Unknown | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droPer1 | Unknown | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | Unknown | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | Unknown | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | Unknown | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droGri2 | Unknown | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:19451026-19451151 + | CTTTGGGCGTTCGCCTCCTTGCTGT------GGGTGTGGT--------TGCGTGCGTAGACGTCAGCGCAATGCCTTTGTTTGGCGGCATGCG-G---ATGACAT-----------------TCACGTCCGTATCCGCACACACATCCGCATCCATATA-----------------------------TC------ |
| droSim1 | chrX:15016847-15016968 + | CTTTGGGCGTTCGCCTCCTTGCTGT------GGG--TGGG--------TGCAGGCGTGGACGTCAGCACAATGCCTTTGTTTGGCGGCATGTG-G---ATGACGT-----------------TCATGTCCACATCCGCACACACATCCGCATCCATA-------------------------------TC------ |
| droSec1 | super_8:1733318-1733439 + | CTTTGGGCGTTCGCCTCCGTGCTGT------GGG--TGGG--------TGCAGGCGTGGACGTCAGCACAATGCCTTTGTTTGGCGGCATGTG-G---ATGACGT-----------------TCATGTCCACATCCGCACACACATCCGCATCCATA-------------------------------TC------ |
| droYak2 | chrX:11887438-11887559 - | CTTTGGGCGCTCTCCTCCTTGCTGT------GAG--CGGG--------TGCGTGCGTTGACGTCAGCGCAATGCCTTTGTTTGTCGGCATGCG-G---ATGGCGT-----------------ACACGTCCACATCCGCACACACACACGCATCTGTA-------------------------------TC------ |
| droEre2 | scaffold_4690:9687367-9687488 + | CTTTGGGCGCTCCTTTCCTGGCTGT------GAG--TGGG--------TGCGTGCGTTTATGTCAGCGCAATGCTTTTGTTTGGCGGCATGCG-G---ATGGCAT-----------------ACACGTCCACATCCGCACACACATCCGCATCCGTA-------------------------------TC------ |
| droAna3 | scaffold_13417:2469661-2469798 - | CGA-----------CTT----CTGTGTGT--GTGTGCGTG--------TGTTGGCGTTGGCGTCAGCGCAATGCCATTGTTTGCCGGCATGCG-G---CTGGCGT-----------------GCACGTCTACATCCGCACCTGCATCCACAT------AGCAGCTGCAACAACAAACACGGCACTCCGTC------ |
| dp4 | chrXL_group1e:12520639-12520746 - | TTTTTGA-------------GT-----GTGTGTT--TGTATTTATTTATTTTTGTGTGGACTTCACTGCATTGTCATTGATTGGCGGC-----------TGTCGT-----------------GCAGGACAATGT--GAAACATCATTCGACA-CAAA-------------------------------TC------ |
| droPer1 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | scaffold_13042:909712-909778 - | A----------------------------------------------------------------------GGCCATTGTT--ATGGCAGGTGGGCAGGTGTCAT-----------------CAATAGCCGCATCC--AGGCACATCCGCATCCACA-------------------------------T------- |
| droMoj3 | scaffold_6328:2902676-2902778 - | CTGTGGGCTTTAGGCCAATTGATAT------GGT--CGTG--------T------------------------------------GGCATGAG-G---CAGGTGTCAGCAGGTGGCAGCAATTCGGAACCAT-TGTGTGCCCACATCCGCATTTGCA-A-----------------------------GC------ |
| droGri2 | scaffold_15081:2046312-2046418 - | TGTTGCA-------------GTTGC------ATT--TGAA--------TGTAGGTGTTGTCATTA-------------TTTTGAGGGCATGCG-G---CAGGTGTCAACG------------CCACGTCCTCATTTGCATCCGCTTCCGCATCCGCA-------------------------------TCCGCTGT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:9289926-9290048 - | GTG-------TGCCG------------CCTACTTACC-----------------------------------------------AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGAGTTGCCCAGCAAAA---------GAA |
| droSim1 | chr3R_random:533427-533549 - | GTG-------TGCCG------------TCTACTTACC-----------------------------------------------AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGAGTTGCCCAGCAAAA---------GAA |
| droSec1 | super_0:12715202-12715324 + | GTG-------TGCCG------------TCTACTTACC-----------------------------------------------AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGAGTTGCCCAGCAAAA---------GAA |
| droYak2 | chr3R:13598006-13598135 - | GTGCTAGATGTACGA------------TGTACTTACC-----------------------------------------------AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGAGTTGCCCAGCAAAA---------GAA |
| droEre2 | scaffold_4770:12350666-12350788 + | GTG-------CTAGA------------TGTACTTACC-----------------------------------------------AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGAGTTGCCCAGCAAAA---------GAA |
| droAna3 | scaffold_13340:1848657-1848824 - | GAG--------------------------TACTTAGCCCCAACCATTGGTAAATATTGATTTTATACTTACATTACTTCCTGCGAAG-TCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGAGTTGTCCAGCAAAATACAAG---GAA |
| dp4 | chr2:16736618-16736739 - | T-A-------TCTTG------------TGCATTTTGG-----------------------------------------------CGGTTTGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG-GTGGTCCAACAGTG---------AAA |
| droPer1 | super_0:3659179-3659300 + | T-A-------TCTTG------------TGCATTTTGG-----------------------------------------------CGGTTTGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG-GTGGTCCAACAGTG---------AAA |
| droWil1 | scaffold_181130:6363211-6363342 - | GAT-------GGATCAATACTTACTTGAAC------------------------------------------------GAAG--CGTATTGCTTTACTAAGTACTAGTGCCGCAGGAGTTTGGTTCGTGTCCGTAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGACGACTTTACCTACTTAA---------AAA |
| droVir3 | scaffold_12855:2861518-2861626 + | T----------------------------------------------------------------------------------------TGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTTGTGTCCGCAATGCCTCCTGCTGCCCAAGTGCTTATTAAAGCGACTAGTTTTCCACCAGCA-ACAATTAGAAA |
| droMoj3 | scaffold_6540:10349255-10349360 - | T----------------------------------------------------------------------------------------TGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGGTTGTGTCCGCAATGCCTCCTGCTGCCCAAGTGCTTATCAAAGCGACGAGTTTTTCAACAGCA-GCAAT---TAA |
| droGri2 | scaffold_14906:3807816-3807948 - | TTG-------TGGCA----CTTACTTGAGC----------------------------------------------TTGATG--CGTATTGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTTGTGTCCGCAATGCCTCCTGCTGCCCAAGTGCTTATTAAGGCGACGAATTTTCCAACAATGTGC------GAG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:11953395-11953518 - | CCATCTAAT----------------------------------------GGT--ATATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTTA--TACAACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAAACAT---------CCAAAATGAA |
| droSim1 | chr2L:11760450-11760573 - | CCATCTAAT----------------------------------------GGT--ATATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTTA--TACAACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAAACAT---------CCAAAATGAA |
| droSec1 | super_16:152684-152807 - | CCTTCTAAT----------------------------------------GGT--ATATAGATCTCGACACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTTA--TACAACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAAACAT---------CCAAAGTGAA |
| droYak2 | chr2L:8374818-8374940 - | CCAGCTGCT----------------------------------------GGT--ATATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTACTTTTTA--TACAACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAAACAT---------CCAA-ATGAA |
| droEre2 | scaffold_4929:13456433-13456555 + | CCATCTGAT----------------------------------------GGT--GTATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTACTTTTGA--TACAACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAAACAT---------CCGA-ATGAA |
| droAna3 | scaffold_12943:2289700-2289819 + | ACA----------------------------------------------AGT--TTCTCCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTCTA--TACAACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGATTAAAACATCAAA------A-AAGTGA- |
| dp4 | chr4_group3:7322788-7322905 + | ACTCATAAG----------------------------------------TGT--ATCCACATCCCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTT-TTTCAA--TACAACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGACT----CAT---------CTCA-ATCAA |
| droPer1 | super_1:8768281-8768398 + | ACTCATAAG----------------------------------------TGT--ATCCACATCCCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTT-TTTCAA--TACAACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGACT----CAT---------CTCA-ATCAA |
| droWil1 | scaffold_180708:2657721-2657853 - | CTTTCGATT----------------------------------------GG---TTCTGCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTTTTATTTAACAC-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGATTTAAGCATACAGAACATCCGACATCAA |
| droVir3 | scaffold_12963:13235091-13235216 + | CTTAATGTT----------------------------------------GCTTGCTCTGCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTTTTATAA--CAC-GCCCGTGATCTCTTAGTGGCATCTATGGTGCGGGA-TATTACGTACAA------C-AAATGAA |
| droMoj3 | Unknown | ACT-------------------------------------------------------------------AGTGATTGGCACTGGGAGAATTCACAGTTGA-TTATAT--AATATTCTGTGGTTCTGC-----------GGGTGCCAAAATATAATAT---------TCGGAATAAT |
| droGri2 | scaffold_15126:6621358-6621517 - | CTACCTGAATTTCTGCTGGGTAAGTTATTTTTTTCAAGTGATTTTTCTTGTT-GTTCTGCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTATTTTAA--CAC-GCCCGTGATCTCTTAGTGGCATCTATGGTGCGGGA-TATTACGT---------GCAGA---AA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:15836491-15836610 - | CTGTAGCTCTTCA-----------------------------A------TTTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAAAACCG-GCTTTGTACAACGATT------------TCT |
| droSim1 | chr3L:15181316-15181435 - | CTCTAGCTCTTCA-----------------------------A------TTTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTGAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAAAACCG-GCTTTATACAACGAAT------------TCT |
| droSec1 | super_0:7944386-7944505 - | CGCTAGCTCTTCA-----------------------------A------TTTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTGAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAAAACCG-GCTTTATACAACGATT------------TCT |
| droYak2 | chr3L_random:2539138-2539257 - | CGATAGCTCTTCA-----------------------------A------TCTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCAACG-GCTCTATACAACGATT------------TCT |
| droEre2 | scaffold_4784:18090156-18090270 - | CTG--GCGATTCA-----------------------------AACC---ATAGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGATTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCAACA-GCTCCATACAACG------------------ |
| droAna3 | scaffold_13337:11320710-11320858 + | TTGTGATTTTTGAATCAAATATTCTG--------------G----ACTCTCTGCTGTCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTGAAATAATG-GCCTAAAACCTCAAAAAAGGATATTTATTAT |
| dp4 | chrXR_group6:3598033-3598148 - | CGATCGTTA-----------------------------------------TTGCTGGCATTGGCTCTTGGCACTGGGAGAATTCACAGTTGGTTTCCAT---ATATTCTGTGGTTCTGCGGGTGCC-AAAATCGAATGTTCG-GCTCGAAACAGCAGCT------------GAA |
| droPer1 | super_9:1894031-1894138 - | T--------------------------------------------------TGCTGGCATTGGCTCTTGGCACTGGGAGAATTCACAGTTGGTTTTCAT---ATATTCTGTGGTTCTGCGGGTGCCCAAAATCGAATGTTCG-GCTCGAAACAGCAGCT------------GAA |
| droWil1 | scaffold_180727:1452378-1452537 + | CTTAAATTCTAAG-AAAGATTTTCTGTGTGTGTTTGAACGAAAATAAAGTCTGCTCACAATGCATCTTGGCACTGGGAGAATTCACAGTTGATTCTTATTCGATATTCTGTGGTTCTGCGGGTGCC-AAAATCTAATGTTTGAGCTGTGATCATCGAAA------------AAG |
| droVir3 | scaffold_13049:24412507-24412633 - | TTGT-GTTCTTCT------------------------ACGGAAAGCAGAGCTACTGCCATTTCATCTTGGCACTGGGAGAATTCACAGTCGATTACATA---ATATTCTGTGGTTCTGCGGGTGCC-AAAATGTAATGTGTG-GACCAAGACAGC-----------------CT |
| droMoj3 | Unknown | AC-TAGT---------------------------------------------------------GATTGGCACTGGGAGAATTCACAGTTGATTATATA---ATATTCTGTGGTTCTGCGGGTGCC-AAAATATAATATTCG-GAATA------------------------AT |
| droGri2 | scaffold_15110:24319786-24319904 - | ATATTGT--GGAA-----------------------------A------GCTACTGCCATTACATCTTGGCACTGGGAGAATTCACAGTTGGTTATATA---ATATTCTGTGGTTCTGCGGGTGCC-AAACTGTAATGTGTG-GACATAGA-AACAACC------------TGA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:11650003-11650132 + | AG-T----TTTGGTGAC--------GAATCC---------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTG--------------------TT------------------TGGCCG-CCAGGAT--TACTCGTTTTTGCGATCACAAATTATGAAATTGCAGCAAAA-CT---------CAACGA--------AATTG |
| droSim1 | zdo16e12.g1:275-405 + | AG-T----TTTAGTGAC--------AAATCC---------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTG--------------------TT------------------TGGCCA-CCAGGAT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-TG---------CAACAA--------AAATG |
| droSec1 | super_0:3837012-3837141 + | AG-T----TTTAGTGAC--------AAATCC---------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTG--------------------TT------------------TGATCA-CCAGGAT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CG---------CAACAA--------ATATA |
| droYak2 | chr3L:11678621-11678750 + | TG-A----TTTTATGCC--------GAATCC---------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTG--------------------TT------------------TGGTCG-CCAGGAT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CG---------CAACAA--------AGTCG |
| droEre2 | scaffold_4784:11632283-11632412 + | TG-A----TTTTATGGC--------CAATCC---------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTG--------------------TT------------------TGGCCG-CCAGGAT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CG---------CAACGA--------AGTCG |
| droAna3 | scaffold_13337:5918600-5918728 + | GC-C----TTTTTTTAA--------AAAACA-------GAAATGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTT--------------------AC------------------AGGACATACAGGAT--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAA-AA---------CAGCAA--------A---- |
| dp4 | chrXR_group6:10040179-10040309 - | CC-TGGCACCTGGAACC--------TGGTCC---------CGTGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGG---------------------C------------------TGGCCG--CAGGAC--TACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACG-AG---------CAGCGA--------AACTG |
| droPer1 | super_61:320241-320372 - | ACCTGGCACCTGGGACC--------TGGTCC---------CGTGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGG---------------------C------------------TGGCCG--CAGGAC--TACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACG-AG---------CAGCGA--------AACTG |
| droWil1 | scaffold_180949:2705123-2705289 - | TT-T-------TGTGAT--------TATTTT---TAATATCCTGTTGCAGTTTCATTTTGTGACCGACACTAACGGGTAGTAACGGGTTAACAAAGTCGTTTTTC------------------TGGCCT------TT--TACTCGTTTTTGCGATCACAAATTCTGAAATTGCAGCAAAAGATCAACGTATACAACAAACACATAAAATGA |
| droVir3 | scaffold_13049:23860698-23860839 + | AA-T----CCCAATGTC--------GCATCCTGT-------TTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGGG----------------------GCA-CCTCGAATAC-G--------CTGTTT--TACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-AG---------CAACAA-----GAAAATTT |
| droMoj3 | scaffold_6680:18485462-18485604 + | GA-A----TCTGTTGTCAAGT----GTATCC---------TGTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGAG----------------------GCA-TCTCGTATTC-G--------CTGTTTTATACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-CG---------CAACGA--------AAATG |
| droGri2 | scaffold_15110:13805592-13805748 - | AA-AGTGAAATAGTGCAACGTATACGAGTCCTGT-----GCGTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTA--------------------AAGGGCATCCTCGCATTCTG--------CTGGCT--TACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-AT---------CAACAA--------AACCA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:7425780-7425907 + | TGATGTTCCCCCGACTGTA--AAGTCTCCTACCTTGCGCGCTAATCAGTGACCGGGGCTGGTTTT-----TTATAT---ACAGTCAGGTACCTGAAGTAGCGCGCGTGGTGG-CAGACATATAT----CTCCATCTT-------------------CACC--AT |
| droSim1 | chr2L:7217350-7217477 + | TGATGTTCCCCCGACTGAA--AAGTCTCCTACCTTGCGCGCTAATCAGTGACCGGGGCTGGTTTT-----TTATAT---ACAGTCAGGTACCTGAAGTAGCGCGCGTGGTGG-CAGACATATAT----CTCCATCTC-------------------CGCC--AT |
| droSec1 | super_3:2941240-2941367 + | TGATGTTCCCCCGACTGAA--AAGTCTCCTACCTTGCGCGCTAATCAGTGACCGGGGCTTGTTTT-----TTATAT---ACAGTCAGGTACCTGAAGTAGCGCGCGTGGTGG-CAGACATATAT----CTCCATCTC-------------------CGTC--AT |
| droYak2 | chr2L:5473766-5473897 - | TGATGTTCCCCCGACTGAACAGAGTCTCCTACCTTGCGCGCTAATCAGTGACCGGGGCTGGTTTT-----TTATAT---ACAGTCAGGTACCTGAAGTAGCGCGCGTGGTGC-CAGACATATAT----CTCCAACTC-------------------CACGATAT |
| droEre2 | scaffold_4929:16344506-16344633 + | TGATGTTCCCCCGACTGAA--AAGTCTCCTACCTTGCGCGCTAATCAGTGACCGGGGCTGGTTTT-----TTATAT---ACAGTCAGGTACCTGAAGTAGCGCGCGTGGTGC-CAGACATATAT----CTCCATCTC-------------------CACC--AT |
| droAna3 | scaffold_12916:15333987-15334092 + | -------------ACTCTC--CAGTCTCCTACCTTGCGCGCTAATCAGTGACCGGGGCTGGTTTT-----TGCA-----ACAGTCAGGTACCTGAAGTAGCGCGCGTGGTGG-CAGACATATAT----C---------------------------CGCC--AT |
| dp4 | chr4_group1:4175726-4175840 + | CCACCTTC-------TTGA--AAGTCTCCTACCATGCGCGCTAATCAGAGACCGGGGCTGGTTTT-----TTCACT---GCAGTCAGGTACCTGAAGTAGCGCGCGTGGTGC-TAGACACGAA--CATC--TGT----------------------------GT |
| droPer1 | super_5:1086449-1086563 - | CCACCTTC-------TTGA--AAGTCTCCTACCATGCGCGCTAATCAGAGACCGGGGCTGGTTTT-----TTCACT---GCAGTCAGGTACCTGAAGTAGCGCGCGTGGTGC-TAGACACGAA--CATC--TGT----------------------------GT |
| droWil1 | scaffold_180772:5257564-5257692 - | -----------------------GTCTCTTACCTTGCGCGCTAATCAGTGACCAGGGCTGAGTAATTTTATTCAAT---ACAGTCAGGTACCTGAAGTAGCGCGCGTGGTTT-TAGACCAAGATTCATC------GCACGACGACGGCGACAACGACGAC--AC |
| droVir3 | scaffold_12963:15419953-15420067 - | --------------CTGCG--CCGTCTTTTACCGTGCGCGCTAATCAGTGACCGGGGCTGGTTTT-----GGTTATCCCACAGTCAGGTACCTGAAGTAGCGCGCGTGGTGGCCAGACGTATT--CATC------TT-------------------AAGC--TT |
| droMoj3 | scaffold_6500:18399386-18399492 - | -----------------------GTCTTTTACCGTGCGCGCTAATCAGTGACCGGGGCTGGTTTC-----GATTATCTCACAGTCAGGTACCTGAAGTAGCGCGCGTGGTGGCTAGACGCATT--CAAC------GCTC-----------------T-----GC |
| droGri2 | scaffold_15126:5008400-5008494 + | -----------------------GTCGTTTACCGCGCGCGCTAATCAGTGACCGGGGCTGGTTTT-----GATTATCCCACAGTCAGGTACCTGAAGTAGCGCGCGTGGTGGCCAGACGCAT------------------------------------------ |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:10358313-10358440 + | CC-AA----------GA---------TATTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CAAGTGAATGCAAAA-------------------------------------ATCC |
| droSim1 | chr3L:9747980-9748107 + | CC-AA----------GA---------TATTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CAAGTGAATGCAAAA-------------------------------------ATCC |
| droSec1 | super_0:2571151-2571278 + | CC-AA----------GA---------TATTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CAAGTGAATGCAAAA-------------------------------------ATCC |
| droYak2 | chr3L:10348871-10348998 + | GC-AA----------GA---------TATTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CAAGTGAATGCAAAA-------------------------------------ATCC |
| droEre2 | scaffold_4784:10353122-10353248 + | GC-AA----------GA---------TAT-TTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CAAGTGAATGCAAAA-------------------------------------ATCC |
| droAna3 | scaffold_13337:15274238-15274391 + | CC-AA----------GA---------TATTTCTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTAACATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCTAAAATCAAC-GA-----AA------ACATAAAGCGGAGTTGGTTTCCCCTTCAACCA-AAAAAT-C |
| dp4 | chrXR_group6:8756376-8756505 + | CG-AACGGAGGAGAAGATGTGTGTATT--TTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCATATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAGACAAC-GA------------------------------------------------------ |
| droPer1 | super_27:1191188-1191317 + | CG-AACGGAGGAGAAGATGTGTGTATT--TTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCATATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAGACAAC-GA------------------------------------------------------ |
| droWil1 | scaffold_181024:222598-222734 - | CTGAA----------AA---------TA--TGCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCATTTAATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-GTTACGAAA------ACAG----------------------CAACAAGAAA-AAAC |
| droVir3 | scaffold_13049:16143973-16144087 + | TG-AA----------AA---------TAT--GCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCAATTTATATACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-GAAGTG-------------------------------------------------- |
| droMoj3 | scaffold_6680:20621809-20621940 - | CC-AA----------AG---------TAT--GCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCAATTTAAATACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAACACAACTCAAACAAAAACGAAAACG----------------------------------AGCG |
| droGri2 | scaffold_15110:12521926-12522042 - | CA-AA----------AA---------TAT--GCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTAAATTTAAATACTCATAGGAACTTCATACCGTGCTCTTGGAAGACCAAAACACAAC-AAAG------------------------------------------------AAAC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:10312870-10312998 + | GACCA-------TC-----GAAC-GA--AAAAAACCGAAGTCTTTTTACCATCAGCGAGGTATAGAGTTCCTACGTTCCTATATT-C---AGTCGTAGGAACTTAATACCGTGCTCTTGGAGGACTGTCGACCAGCATA--------TAGTTAAAA |
| droSim1 | chr3L:9702897-9703022 + | GACCA-------TC-----GAAC-G---AAAAAACCGAAGTCTTTTTACCATCAGCGAGGTATAGAGTTCCTACGTTCCT--ATT-C---AGTCGTAGGAACTTAATACCGTGCTCTTGGAGGACTGTCGACCATCATA--------TAGTTGAAA |
| droSec1 | super_0:2526747-2526871 + | GACCA--------C-----GAAC-G---AAAAAACCGAAGTCTTTTTACCATCAGCGAGGTATAGAGTTCCTACGTTCCT--ATT-C---AGTCGTAGGAACTTAATACCGTGCTCTTGGAGGACTGTCGACCATCATA--------TAGTTGAAA |
| droYak2 | chr3L:10302128-10302256 + | GACAA-------CA-----GAAA-GAACAAAAAACCGAAGTCTTTTTACCATCAGCGAGGTATAGAGTTCCTACGTTCCT--ATT-C---AGTCGTAGGAACTTAATACCGTGCTCTTGGAGGACTGTCGACCATCATA--------AAGTTAAAA |
| droEre2 | scaffold_4784:10306167-10306292 + | GACAA-------CC-----GAAT-A---AAAAAACCGAAGTCTTTTTACCATCAGCGAGGTATAGAGTTCCTACGTTCCT--ATT-C---AGTCGTAGGAACTTAATACCGTGCTCTTGGAGGACTGTCGACCATCATA--------AAGTTGAAA |
| droAna3 | scaffold_13337:15233368-15233487 + | ATTT------------------CTG---AAGAAACCGAAGCCTATTTGCCATCAGCGAGGTATAGAGTTCCTACGTGCCA--CTTAAACTAGTCGTAGGAACTTAATACCGTGCTCTTGGAGGGCTGTCGACCATCATG--------A-----AAG |
| dp4 | chrXR_group6:8706029-8706135 + | ATCTA---------------------------AAGCGAAGCCTCTTTACCATCAGCGAGGTATAGAGTTCCTACGTGCCG-TATC-CAA-AGTCGTAGGAACTTAATACCGTGCTCTTGGAGGGCTGTCCATCAAC-------------------- |
| droPer1 | super_27:1146104-1146210 + | ATCTA---------------------------AAGCGAAGCCTCTTTACCATCAGCGAGGTATAGAGTTCCTACGTGCCG-TATC-CAA-AGTCGTAGGAACTTAATACCGTGCTCTTGGAGGGCTGTCCATCAAC-------------------- |
| droWil1 | scaffold_181024:290398-290516 - | AACAA--------------ATTT-G---AAATAAACGAAGCCTATTTACCATAAGCGAGGTATAGAGTTCCTACGTGCAA--ATTGCAATAATCGTAGGAACTTAATACCGTGCTCTTGGAGGGCTGTCGAACAACAA-----------------A |
| droVir3 | scaffold_13049:16093198-16093326 + | TATCT--------T---AAGATTTA---AAGATACCGAAGTCTATATACCATCAGCGAGGTATAGAGTTCCTACGTGCAA--ATTGCAATAATCGTAGGAACTTAATACCGTGCTCTTGGAGGGCTGTCGACCAGCAA-----------GAAAAGA |
| droMoj3 | scaffold_6680:20678203-20678343 - | GACCAAGTGAAACAGAG--ATTGTA---AAGATAACGAAGTCTATATACCATCAGCGAGGTATAGAGTTCCTACGTGCAA--ATTGCAATAGTCGTAGGAACTTAATACCGTGCTCTTGGAGGGCTGTCGACCAACAAA--------ACGAATAAA |
| droGri2 | scaffold_15110:12572308-12572448 - | AAATC-------TC---AAAACCGA---AAGATAACGAAGTCTATTTACCATTAGCGAGGTATAGAGTTCCTACGTGCAA--ATTGCAATAATCGTAGGAACTTAATACCGTGCTCTTGGAGGGCTGTCGACCAGCATTGATCAAAACAATTAAGT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:5925729-5925858 + | G-ATAAAAT--GCA--TCCT-TTGA--AGGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAACTATCTGA-AGCATGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAGGAAA------------------ |
| droSim1 | chr3R:15450308-15450437 - | G-ATAAAAT--GCA--TCCT-TTGA--AGGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAACTATCTGA-AGCATGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAGGAAA------------------ |
| droSec1 | super_0:15987777-15987906 - | G-ATAAAAT--GCA--TCCT-TTGA--AGGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAACTATCTGA-AGCATGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAGGAAA------------------ |
| droYak2 | chr3R:9973459-9973588 + | G-ATAAAAT--GCA--TCCT-TTGA--AGGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAACTATCTGA-AGCATGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAGGAAA------------------ |
| droEre2 | scaffold_4770:15674279-15674408 - | G-ATAAAAT--GCA--TCCT-TTGA--AGGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAACTATCTGA-AGCATGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAGGAAA------------------ |
| droAna3 | scaffold_13340:6488981-6489110 + | A-GAAAAAT--GCA--TCCT-TTGA--AGGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAACATTCTGA-AGCTTGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAAGAAA------------------ |
| dp4 | chr2:5020571-5020711 - | G-ATTAACTGAGCA--TCCT-TTGA--AGGTTTTGGGTTGCGTGTCAGGAGTGCATTTGCACTGAAACATTCTGA-AGCTTGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAAGACAAATA--TGC-GA------ |
| droPer1 | super_19:726018-726152 - | G-ATTAACTGAGCA--TCCT-TTGA--AGGTTTTGGGTTGCGTGTCAGGAGTGCATTTGCACTGAAACATTCTGA-AGCTTGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAAGACAAAT--------------- |
| droWil1 | scaffold_181089:11168086-11168217 - | G-AAAACAA--GCA--TCCTTTTGA--AGGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAAATTTCTAAAAGCTTGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCTCGAATGCAAGAAA------------------ |
| droVir3 | scaffold_12855:2684186-2684333 - | GTATATAGA--GCATATCCT-T-GAGACAGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAACATTCTGAAAGCTTGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAAACAA-ATAAATGCTGAAT---- |
| droMoj3 | scaffold_6540:11885074-11885210 - | T-ATAGCAT-AGCA--TCCTCTTGAGACAGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAACATTCTGA-AGCTTGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAACAA--CTAA------------- |
| droGri2 | scaffold_14624:2266182-2266325 + | A--TA------TCA--TC-T-TTGAGACAGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAACATTCTGAAAGCTTGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAAGAAA--TAAATGCTGAATAAAC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:11544556-11544683 + | T--GATACGAG---------------------------ACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTG---TCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------G---------TGTCCGT |
| droSim1 | chr2R:10277194-10277321 + | T--GATACGAG---------------------------ACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTG---TCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------G---------TGTCCGT |
| droSec1 | super_1:9037606-9037733 + | T--GATACGAG---------------------------ACCATAGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTG---TCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------G---------TGTCCGT |
| droYak2 | chr2R:17445962-17446088 - | T--GATACGAC---------------------------ACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTG---TCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------G---------TGTCCG- |
| droEre2 | scaffold_4845:14318899-14319025 - | T--GATACGAG---------------------------ACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTG---TCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------G---------TGTCCG- |
| droAna3 | scaffold_13266:12641317-12641435 - | TATG-----------------------------------TAACGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTG---TCCTTCGAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCA----------------------------TCCGG |
| dp4 | chr3:19640883-19641018 - | T--G-----------------------------------CAACGGTAATGGTACGGTGCGACCGGACGATGGTTCACAACGACCGTG---TCTCTTAAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCATCATCGTCGCGCCCCAG---------TGCTCGT |
| droPer1 | super_37:642280-642415 - | T--G-----------------------------------CAACGGTAATGGTACGGTGCGACCGGACGATGGTTCACAACGACCGTG---TCTCTTAAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCATCATCGTCGCGCCCCAG---------TGCTCGT |
| droWil1 | scaffold_181009:1555699-1555856 - | T--GTAACGAGTTAAAAAAAAATAAGGGGAGATCCCCCATAATGGTAATGGTACGGTGCGACCGGATGACGGTTCACAACGACCGTG---TCAATTTTACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCATAATC----------------------TCTAGG |
| droVir3 | scaffold_12875:6427523-6427640 - | T--G---------------------------------------GTTTATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGCA-TACTTTTAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------A---ATCAG------AT |
| droMoj3 | scaffold_6496:23589388-23589515 + | T--G---------------------------------------GTTTATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTACAGTTTTTTCAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------GCAAATCAGATATCAGC |
| droGri2 | scaffold_15112:1314106-1314223 - | T--GGTC--------------------------------------TGATGGTACGGTGCGACCGGATGACGGTTCACAACGACCGTGCT-TATTTTTAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCA----------------A----------ATCAGT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:25041292-25041421 + | ACTGG--------AGCTGGAATTGG-AATTCATACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATTGATTTTCTT-AGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAAG--------------CACGT |
| droSim1 | chr3R:24712183-24712312 + | ACTGG--------AGCTGGAATTGG-AATTCATACTGCTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATTGATTTTCTT-AGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAAG--------------CACGT |
| droSec1 | super_4:3904072-3904201 + | ACTGG--------AGCTGGAATTGG-AATTCATACTGCTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATTGATTTTCTT-AGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAAG--------------CACGT |
| droYak2 | chr3R:21456037-21456166 - | ACTGG--------AACTAGAATTGA-AATTCATACTACTGTTTTTAGTGGGTGAGGGTCCAGTGCTTCACATTGATTTTCTT-AGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAAG--------------CACGT |
| droEre2 | scaffold_4820:2989050-2989173 - | ACTGG--------------AATTGG-AATTCATACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATTGATTTTCTT-AGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAAG--------------CACGT |
| droAna3 | scaffold_13340:14200293-14200422 - | GGCGG--------CGATACTAATAC-TACTACTACTACTGTTTTTAGTGGGTGAGGGTCCAGTGTTTCACATTGATTT-C---TGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCAGCAAG-----------GCCCACGT |
| dp4 | chr2:1881900-1882031 + | AGTGG--------TTTTA-AGTTCG-CGATCATACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATTGATTTTCTT-AGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCAACAGA-----------ATGCACGT |
| droPer1 | super_7:2045298-2045429 + | AGTGG--------TTTTA-AGTTCG-CGATCATACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATTGATTTTCTT-AGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCAACAGA-----------ATGCACGT |
| droWil1 | scaffold_181108:1734340-1734482 + | ACTAC--------TACTACGACTAG-AACAACTACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATTAAATAT-TT-AGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCGAAAATAAAAAAAGAAACACGT |
| droVir3 | scaffold_12822:2330907-2331031 + | ACGAG-----------TGGA-TCGAATATGCGTACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATTCGTTTTTTCAAGTATTTGTGACTAGATCCACACTCATTAACAACGGTAGTTCAATCAGCAAA--------------TA--- |
| droMoj3 | scaffold_6540:26447118-26447234 + | AC-GG--------TTCTG-A-TCGGAAATACGTACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATTGTTTG-CTTAAGTATTTGTGACTAGATCCACACTCATTAAAAACGGTAGTTCAATC------------------------- |
| droGri2 | scaffold_14624:3249724-3249850 + | ATAAGGGAAGTGATTTA-----TGGATAACCGTATTACTGTTTTTAGTGGGTGAGGGTCCAGTGTTTCACATTGTTT--ATT-TGTATTTGTGACTAGATCCACACTCATTAAAAACGGTAGTTCAATCAACA-------------------GT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:4185596-4185720 + | CTGACGT-------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAA-------------------------------------GTCGA------GGTCCTCCA-----------CACT-------GCACTCGC-CGC-CTCGA |
| droSim1 | zee54c10.b1:599-724 + | CTGACGT-------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAA-------------------------------------GTCGA------GGTCCTGCA-----------CACT-------GCACTCGC-CGC-CTCGA |
| droSec1 | super_1:1832273-1832397 + | CTGACGT-------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAA-------------------------------------GTCGA------GGTCCTGCA-----------CACT-------GCACTCGC-CGC-CTCGA |
| droYak2 | chr2L:16840791-16840915 + | CTGACGT-------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAA-------------------------------------CTTGA------GGTCCTGCA-----------CACT-------GCACTCTC-CCG-CTCGA |
| droEre2 | scaffold_4929:18446687-18446817 - | CTGACGT-------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAA-------------------------------------GTCGA------GGTCCAGCA-----------CACTGCACACTGCACTTGC-C-C-CTCGA |
| droAna3 | scaffold_13266:1806990-1807233 - | TTGAAAT-------------------G-----TGTGTATGTGGG--------TG----------GGTG----GGTGTGTGTGCACTTTCTGCCATCCAGACTGCCAGCCAGCCATCTAGCCAGCCTGCCTGACTGCTTTCCTTGCCACTT-----GTGTGTATGTGTGTGTG-----------------TGTATGAGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAA-------------------------------------G-------------CCTGAACAACTTTGGAACACT-------GCAATCGC-CTT-CTGGA |
| dp4 | chr3:2170016-2170201 + | TTGATGC-------------------C-----tgtgtgtgtgtg--------------------------tgtgtgtgtgtCCAGTCGGTGTCATGA-GG-------------------------------------------------CGTATGCC----GTGTGTGTGTG-----------------TGTGTGAGACGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATG--TGCAG-------------------------------------CTGAA------GAGCCTGTC-----------CATT-------GCACAATC-C-C-CACCC |
| droPer1 | super_2:2339680-2339867 + | TTGATGC-------------------C-----TGTGTGTGTGTG----------------------------TGTGTGCGTCCAGTCGGTGTCATGA-GG-------------------------------------------------CGTATGCCgtgtgtgtgtgtgtg-----------------tgtgtgAGACGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATG--TGCAG-------------------------------------CTGAA------GAGCCTGTC-----------CATT-------GCACAATC-C-C-CTCCC |
| droWil1 | scaffold_180701:589914-590141 + | TTGATGCCCCAACACACACCCACCTCC-----TATCTATCTATCTATCTCTGTCTCACCATAACTGAg------------------------------------------------------------------------------------------tgtgtgtgtgtgtg-----------------tgtgtatgtTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATG--TGCAACCGAAGCAGCAGAAGCCAGGCC--CAA----------GTAGAAGCAAAAGGCCTGAA-----------CATT-------GCACTTGGGC-CATACGC |
| droVir3 | scaffold_12875:9206154-9206327 + | TTGATGT-------------------CGTCTTTGTGTG-----CCAT------------------GTGTGTGTGTGTGTGTCCATT-------------------------------------------------------------------------------------T-----------------TGTGTGTGTTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATACATGCCA------------------GA----GCAGTGCATGCAACTG------------C-CCA-----------CAAT-------GCACATTT-C-TATCCGC |
| droMoj3 | scaffold_6496:17934933-17935113 - | TTGATGT-------------------CGTCGTTGTGTA-----CCATGCATTCG----------TGTG------------------------------------------------------------------------------------------TGCCTGTGTGTGTG-----------------CGTGTGTGTTAGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATACATGCCA------------------GGCCGGCCAGTGCATGCAACTT------------C-TCT-----------CAAT-------GCATATTC-C-AATCCAC |
| droGri2 | scaffold_15245:2520625-2520797 + | TTGATGT-------------------TGTCGTTGAGT------CTAtgtctgtg----------tgtg------------------------------------------------------------------------------------------tgtgtgtgtgtgtgtgtgcgagtgtCCAGTTCGTGTGTGTTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATACATGCAA-------------------------------------CTC------------CTTCT-----------CAAT-------GGATCCCC--------AC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:8057863-8057982 - | AATCGAATC-CAAATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA--AACTA-TT-TAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGATGCGCTGTGAG |
| droSim1 | chr2R_random:2148092-2148211 - | AATCGAATC-CAAATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA--AAGCA-TT-TAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGATGCGCTGTGAG |
| droSec1 | super_1:5602965-5603084 - | AATCGAATC-CAAATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA--AACCA-TT-TAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGATGCGCTGTGAT |
| droYak2 | chr2R:8893333-8893452 + | AATCGAATC-CATATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA--ATTCA-TT-TAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGATGCGCTATGAG |
| droEre2 | scaffold_4845:17736182-17736301 + | AATCGAATA-CATATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA--AACCA-TT-TAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGATGCACTATGAG |
| droAna3 | scaffold_13266:2568740-2568853 + | CT---ATCT-CGAATGCGAATACGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA--TACCT---ATAAC---ACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGCTTCGCTCCGAT |
| dp4 | chr3:418413-418523 - | AA---AACA-CGAATGCGAATAGGTGAATAAAGAGAGCTGTCCGTCGACAGTCAACG--TACCAATT-TAAT---ACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGTTGCGC----AG |
| droPer1 | super_2:605310-605420 - | AA---AACA-CGAATGCGAATAGGTGAATAAAGAGAGCTGTCCGTCGACAGTCAACG--TACCAATT-TAAT---ACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGTTGCGC----AG |
| droWil1 | scaffold_181141:3241875-3241979 + | AG---A-----AAAAGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGTTAAACGA-TTTTAAA---ACTGTCATGGAATTGCTCTCTTTGTATGATATTCGACGT--------GAC |
| droVir3 | scaffold_12875:19829913-19830024 + | AATCGTACC-CAAAAGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGT--AACAA-ATGTAAT---ACTGTCATGGAATTGCTCTCTTTGTATGATATTCGACGTTGCCC------ |
| droMoj3 | scaffold_6496:6376225-6376337 - | AATCGTAGCGAAAATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGT--AAAGA-TTGTAAA---ACTGTCATGGAATTGCTCTCTTTGTATGATATTCGACGTTGCCC------ |
| droGri2 | scaffold_15245:18178188-18178294 + | AATT---AT-GAAAAGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGT--ATAAA-TTTTAAT---ACTGTCATGGAATTGCTCTCTTTGTATGATATTCGACGTTGC-------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:8057643-8057764 - | CTTTCAG----ATC-CTCCGCGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A----AGACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TAT |
| droSim1 | zdp42d09.g1:294-416 + | CTTTCAG----ATC-CTCCGCGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A----AGACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TAT |
| droSec1 | super_1:5602746-5602867 - | CTTTCAG----ATC-CTCCGCGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A----AGACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TAT |
| droYak2 | chr2R:8893539-8893660 + | CTTTCAG----ATC-CCCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A----ATACCAATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAGGCGACGAT--TAG |
| droEre2 | scaffold_4845:17736400-17736520 + | CTTTCAG----ATC-CTCCACGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A----ATACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TA- |
| droAna3 | scaffold_13266:2568922-2569043 + | CCGCAAG---GATA-CTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-AA--AACACGGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT----- |
| dp4 | chr3:418209-418322 - | TAT---A----ATA-CTGAACGAATAGTGAAATAAAGAGAGCTATCCGTCGACAGTCAAGTT-A----A-TCAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGCCGA------ |
| droPer1 | super_2:605106-605226 - | TTTTCTGTATAATA-CTGAACGAATAGTGAAATAAAGAGAGCTATCCGTCGACAGTCAAGTT-A----A-TCAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGCCGA------ |
| droWil1 | scaffold_181141:3242068-3242181 + | T------------------CCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCCAGTTTAATACATCCGAATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAATCGACGGT--TTT |
| droVir3 | scaffold_12875:19830099-19830219 + | CTAACCA----AAC-T--TGCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGCT-A-----TACAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGACGACTTTAT |
| droMoj3 | scaffold_6496:6376053-6376173 - | CCCTCAG----T----TCTGCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A---TATACATATTTTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAATCGACGAT-ATAT |
| droGri2 | scaffold_15245:18178374-18178494 + | GTTTCAC----AACAAATTACGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A---TATACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGACGAT----- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:3251007-3251133 + | CCGTTCTTT---------AACTATAGTTTCCTTCTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAA-AGCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAACAATCAGC------------------GAAAACGGA |
| droSim1 | chr3L:2784381-2784507 + | CCGTTCTTA---------AACTAAAGTTTCCTTTTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAA-AGCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAACAATCAGC------------------GAAAACGGA |
| droSec1 | super_2:3244745-3244871 + | CCGTTCTTA---------AAATAAAGTTTCCTTTTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAA-AGCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGTGAACAATCAGC------------------GAAAACGGA |
| droYak2 | chr3L:3795918-3796050 + | TCGTTCTATATCCGTTATAT---CAGTTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TACGAA-AGCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGTGAAAAATCAGC------------------GAAAACGGA |
| droEre2 | scaffold_4784:5933708-5933834 + | TCGTTCTAT---------CACCACAGTTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCAAA-AGCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAACAAGCAGC------------------GAAAACGGA |
| droAna3 | scaffold_13337:7556585-7556720 + | CCGTTCTAA-TTCGAAA-ATCGAAAATTTCCTTATAGATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAA-AGTCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGACAAGACATC----------------ACAAAAACGGA |
| dp4 | chrXR_group8:3299974-3300083 - | ---------------------------TGCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGAAAACCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGAAGAAATGCATC------------------AAAAGCGGA |
| droPer1 | super_65:103931-104040 - | ---------------------------TGCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGAAAACCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGAAGAAATGCATC------------------AAAAGCGGA |
| droWil1 | scaffold_181136:1999668-1999787 + | TTTTCCTTTAT--GTAA-TATTAATATATCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGGA------TTCAGACATAGCCTATGAGAGGTTAGGTGTACCAAGGAGAAAATACAAC------------------A-------- |
| droVir3 | scaffold_12758:910696-910814 - | GCGTCCGAC--------------AAATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAT-ATACGGTCAGACATAGCCTATGAGAGGTTAGGTGTACCAAGGGG-ACAAGCAGC------------------GAGGGCG-- |
| droMoj3 | scaffold_6680:1963284-1963406 - | ATTTTTTTT-TGCG------GT-GCATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGAT-ATAAGATCAGACATAGCCTATGAGAGGTTAGGTGTAGCAAGGGG-TCAAACAGC------------------AGA----GA |
| droGri2 | scaffold_15110:607073-607202 + | ---------------------------TTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCACTTTTTCA-ATTCAATCAGACATAGCCTATGAGAGGTTAGGTGTACAAATGGATCAAAGCAACAAGGCTGCTGTCGGGGACTAAAAATGA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:15401974-15402103 + | AGAGAA-A----------AG-----------------------TGTCACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT |
| droSim1 | chrX_random:4022807-4022936 + | AGAGAA-A----------AG-----------------------TGTCACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT |
| droSec1 | super_73:136400-136529 + | AGAGAA-A----------AG-----------------------TGTCACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT |
| droYak2 | chrX:9587590-9587719 + | AGAGAA-A----------AG-----------------------TGTCACCTTACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT |
| droEre2 | scaffold_4690:11632475-11632604 - | AGAGAA-A----------AG-----------------------TGTCACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT |
| droAna3 | scaffold_12929:2900376-2900509 - | GTGTTA-CAGTGTT------------------------CA-----CCACCTCACCTGATTCTTAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTGATTA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTCGAATTGCATTTTATCACCAA |
| dp4 | chrXL_group1a:976013-976147 + | AGAGAA-A-----------G------------CGACGTCACGA-TTCACCTCA--CGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGC-AAGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA- |
| droPer1 | super_26:1090677-1090833 + | AGAGCG--AACGAGAGAGAGTGCCAGAGAAAGCGACGTCACGA-TTCACCTCA--CGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGC-AAGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA- |
| droWil1 | scaffold_180702:1594772-1594907 - | GAGTGC-GAGTGGG------------------------A----GGGAGCCTAACG-AATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTAGATATTTGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTAATCACCAA |
| droVir3 | scaffold_12970:2047646-2047770 + | ACA---------------AG----------------------ATGTCACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACC-- |
| droMoj3 | scaffold_6359:3257693-3257822 + | AGTGAACC----------AG----------------------CTGTCACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCCC-AATA--TGAAACACTCGGAATTTCAGTTGGTATATACTTTTTTGAATTGCATTTTATCACCA- |
| droGri2 | scaffold_14853:6953507-6953633 - | AGAAT--------------G--------------A--------CGTCACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCC-AAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:8377222-8377351 - | ATAATCGGTGATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGGC-AAGGCTTGAATAATGCTCCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCGAT-----------------------------------ATTCCTCAACAATG |
| droSim1 | chr3R:13050845-13050974 + | ATAATGGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGGC-AAGGCTTGAATACTGCTCCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCGAT-----------------------------------ATTCCGCAACAATG |
| droSec1 | super_0:13609227-13609356 + | ATAATGGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGGC-AAGGCTTGAATACTGCTCCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCGAT-----------------------------------ATTCCGCAACAATG |
| droYak2 | chr3R:12662228-12662357 - | ATAATGGGTGATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGGC-AAGGCTTGAGTACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCAAT-----------------------------------ATTCCGCAACAATG |
| droEre2 | scaffold_4770:13275536-13275665 + | TTAATGGGTGATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGGC-AAGGCTTGAGTACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCAAT-----------------------------------ATTCCGCAACAATG |
| droAna3 | scaffold_12911:3307955-3308116 - | ACAAAAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGGC-AAGGCTTGAGAACTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCAAGTACAGCA---GAAAGAGCCGTGAACCGTGTTCAATATGCCACGACAATG |
| dp4 | chr2:2484958-2485100 - | ATCAGAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGGGAAGGC-AAGGCTTGAGCACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCAAGCACAACGCTGAATGG------------TGCTCAAAATAC---------- |
| droPer1 | super_7:2652948-2653090 - | ATCAGAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGGGAAGGC-AAGGCTTGAGCACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCAAGCACAACGCTGAATGG------------TGCTCAAAATAC---------- |
| droWil1 | scaffold_181130:2186197-2186330 - | GTGTGTGACAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTTAGGGGAAAGGCTTGAGCATTGCATACTAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCAAGCTCAACGTT--------------------------------CAACAGTG |
| droVir3 | scaffold_12855:584465-584599 + | ATAAATGGAAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTAAAGGG-AAGGCTTGTGCACTGCTTACAAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCAAGGACAACGTTGGAAAG------------TGTC------------------ |
| droMoj3 | scaffold_6540:12381805-12381927 - | TGTAT---TAATTGCGTTGCAGTTCCTGGAATAAAGTTGACTGTGTCGCCTGTAAGGGG-AAGGCTTTTGCATTGCTTACAAAGTCAGCAACTTGATTCCAGCAACTGCGGCCCAAGCT---------------------------------------CAACGTGG |
| droGri2 | scaffold_14906:1700701-1700824 + | ATA--TGGAAATTGGGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTAAGAGG-AAGGCTTGTGCACTGCTTACAAAGTCAGCAACTTGATTCCAGCAATTGCGGCTCAAACT---------------------------------------CAACGTTG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:11939178-11939306 - | AC-----TTGCC---CT---------------GCCACTTCGAATCGAAGAAC-TGAGATCGATTGGTGCATAGATATC----AGGAGAACCCACTCA---------ATTTAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAA------------GTGTC |
| droSim1 | chr3L:11307954-11308082 - | AC-----TTGCC---CA---------------GCCACTTCGAATCGAAGAAC-TGAGATCGATTGGTGCATAGATATC----AGGAAAACCCACTCA---------ATTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAA------------GTGTC |
| droSec1 | super_0:4127812-4127940 - | AC-----TTGCC---CA---------------TCCACTTCAAATCGAAGAAC-TGAGATCGATTGGTGCATAGATATC----AGGAAAACCCACTCA---------ATTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAA------------GTGTC |
| droYak2 | chr3L:11984774-11984902 - | TC-----TTGCC---CT---------------ACCACTTCGAATCGAAGAAC-TGAGATCGATTGGTGCATAGATATC----AAGACAACCCACTCA---------ATTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAA------------GTGTC |
| droEre2 | scaffold_4784:11929878-11930011 - | TCAGGAGCTGCA---CT---------------CCCACTTCGAGTCGAAGAAC-TGAGATCGATTGGTGCATAGATATC----AAGAAGCCCCACTCA---------ATTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGGA------------GTGTC |
| droAna3 | scaffold_13337:6191341-6191461 - | GC---------C---AG---------------GATAATTCGAATCAAAGAAC-TGAGATCGATTGGTGCATAGATATC----AAGGAGATCCGATCA---------TTTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAACCACTCAACAGA----------------- |
| dp4 | chrXR_group6:1929779-1929903 - | TC-----TTACA---AT---------------TACAGTTCGAATCGAAGAAC-TGAGATCGATTGGTGCATAGATATC----AAGAGGACTCGCTAAT--------TTTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATGAGAACCATTCAACAGA----------------- |
| droPer1 | gnl|ti|738578230:636-763 + | TC-----TTACA---AT-------------T-TACAGTGGGAATCGAAGAACCTGAGATCGATTGGTGCATAGATATC----AAGAGGACTCGATAAT--------TTTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATGAGAACCATTCAACAGA----------------- |
| droWil1 | scaffold_180949:5768880-5769006 + | AC-----A------------------------AATTGTTCGAATTAAAGAAC-TGAGATCGATTGGTGCATAGATAAT----ATGCGAATTCTATCATTTGATTTCATTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATTAGAACCAATCAACAAG----------------- |
| droVir3 | scaffold_13049:21101427-21101556 + | AT-----GCAC----CA---------------GCCAGTTCAAATTGAAGAAC-TGAGATCGATTGGTGCATAGATATCGCCCAAAA--AGTAATTCA---------TTTCAATTCTAGCACCATTCGAAATCAGTGCTTTTTATTCGAACCGATCAGCGGC------------GCATC |
| droMoj3 | scaffold_6680:15475365-15475526 + | AC-----ACACCCAGCAGACATCAAACACCACACCAGTTCAAATTGAAGAAC-TGAGATCGATTGGTGCATAGATAACGCCCAAAAAG--TCATTTT----A----TTTCAATTCTAGCACCATTCGAAATCAGTGCTTTTTATTGGAACCGATCAACGGTGTATGGGAACAAGTGTC |
| droGri2 | scaffold_15110:22570097-22570226 - | AT-----GTAG----CA---------------GCCAGTTCAAATTGAAGAAC-TGAGATCGATTGGTGCATAGATATCGTCCAAGAA---TAATTTA----A----TTTCAATTCTAGCACCATTCGAAATCAGTGCTTTGTATTGGAACCGATCAGCGGC------------GCATT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:15548912-15549041 - | TTG-G--------GCAC--------T------CC----------AGTTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCAAA-G-A------AA-------GGTT----TCG--ATTAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGC-----TCA--G |
| droSim1 | chr2R:14254346-14254476 - | TTG-G--------GCAC--------T------CC----------AGTTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCCAA-AGA------AA-------GGTT----TCG--ATCAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGC-----TCA--G |
| droSec1 | super_1:13063641-13063770 - | TTG-G--------GCAC--------T------CC----------AGTTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCCAA-T-A------AA-------GGTT----TCG--ATCAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGC-----TCA--G |
| droYak2 | chr2R:13623749-13623876 + | TAG----------GCAC--------T------CC----------AGTTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCAAA-A--------GA-------GGTT----TCG--ATCAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGC-----TCA--G |
| droEre2 | scaffold_4845:9749162-9749292 - | TAG----------GCAC--------T------GC----------AGTTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCAAA-G--------AA-------GGTT----TCG--ATCGA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGC-----ACACTG |
| droAna3 | scaffold_13266:9731344-9731477 + | TTT-A--------GCAT--------C------AG----------AATTTTAAAATTGAATGGCGATTGTCGGTATGGTCGCTTTTTCACA-A-A------AAAATT---GGTT----ACC--AACAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCATCAAGC-----TAA--A |
| dp4 | chr3:12677574-12677700 - | AAA-A--------GAAG--------A------CA----------AATTTTAAAATTAAATGGCGATTGTCGGTTTGGTCGCTTTTTACCA-----------G-------GGTT----CCG--ATCAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAGAATGTTCAACATGG-----CCA--A |
| droPer1 | super_2:8905966-8906092 + | AAA-A--------GAAG--------A------CA----------AATTTTAAAATTAAATGGCGATTGTCGGTTTGGTCGCTTTTTACCA-----------G-------GGTT----CCG--ATCAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAGAATGTTCAACATGG-----CCA--A |
| droWil1 | scaffold_180701:1651730-1651882 - | TAT----------GCAA--------T------TG-AAATT----ACTTTTAAAATTGAATGGCGATTGTCGGTATAGTCTCTTTTTCCAA-A--------AATCTTGTTTGTTTTTGCCA--ATCTAATAAGAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACAAGCAACAACCA--A |
| droVir3 | scaffold_12875:4112084-4112243 + | GTG-----TTCCAGTATTCCAGTGTTTCAATTCCAATATTCCAGTATTTTAAAATTAAATGGCGATTGTCGGTATGGTCGCTTTTTCAAA-C--------AA-------TATA----CCATTATC--TATATAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACGTAT-----ATA--A |
| droMoj3 | scaffold_6496:20936771-20936914 - | TCC-A--------GTGT--------T------CGAAAATTATAAAATTTTAAAATTAAATGGCGATTGTCGGTATGGTCTCTTTTTCAACAT-ATACACCAA-------ACAT----T------C--TATATAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACAATT-----TCA--A |
| droGri2 | scaffold_15112:2108802-2108953 - | TGTGTGTGTT---GCAG--------T-CAAACCCAG----CCAGTATTTTAAAATTAAATGGCGATTGTCGGTATGGTCGCTTTTGAACC-T-AAACTC------T---ATAT----ACA--ATA--TATATAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACATAG-----GCA--T |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:17574595-17574717 + | AAGCC--------CACTC-A--CA-----------------GAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACG-ACTGTGAGCAA--AACAC---G-TCGGA |
| droSim1 | chr2L:17277816-17277938 + | AAGCT--------CACTC-A--CA-----------------GAGGACGCCGTGGATGTATGGGTGTGTAGGGTCGGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACG-ACTGTGAGCAA--AACAC---G-TCGGA |
| droSec1 | super_7:1215433-1215555 + | AAGCT--------CACTC-A--CA-----------------GAGGACGCCGTGGATGTATGGGTGTGTAGGGTCGGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACG-ACTGTGAGCAA--AACAC---G-TCGGA |
| droYak2 | chr2R:3525115-3525236 - | ACATA--------TATA-CACACA-----------------GAGCAAGCCGTGGATGTATGGG--TGT-GGGTCTGAAATTTTGCACACATTTACAGTAATTGTAAATGTGTTGAAAATCGTTTGCATG-ACTGTGAGCAA--AACAC---T-TCGGA |
| droEre2 | scaffold_4845:6676077-6676186 - | GTGTG--------GACG-------------------------------C--TGGATGTATGGGTGTGTGGGCTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACG-ACTGCGAGCAA--AACAC---G-TCGGA |
| droAna3 | scaffold_12916:3302442-3302546 - | ATA----------------------------------------GGG--C--TGTGTGTATTGG--TAGTGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACA-ACTGTGAGCAA--AGCAC---G-TCGGA |
| dp4 | chr4_group3:10858860-10858990 - | ACACA--------CACA-CA--TA-----AATATATTCACGGAGACAGTCT--TATGTGTGAG--TGTGGGGCCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACA-ACTGTGAGCAA--AACAC---G-TCGGA |
| droPer1 | super_8:2069946-2070076 - | ACACA--------CACA-CA--TA-----AATATATTCACGGAGACCTGCT--TATGTGTGAG--TGTGGGGCCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACA-ACTGTGAGCAA--AACAC---G-TCGGA |
| droWil1 | scaffold_180764:928810-928950 - | ACTCC--------CACAT-A--CATTGGAAAGAGCTTCTCCGTAATATGTA--TATGTATTGC--TGTAAAGTCTGAAATTTTGCACACATTTACAATTATTGTAAATGTGTTGAAAATCGTTTGCACAAACTGTGAGCAA--AATCCTGTAGCTGGG |
| droVir3 | scaffold_12963:16502531-16502646 + | AGATT--------GACTC-C--CA-----------------CGCTTTCGCACACACACAAACGTGCATAATGTTTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACA-ACTGTGAGCAA-------------CCGA |
| droMoj3 | scaffold_6500:21428983-21429089 + | ACTCC--------CACGC-A--CA-------------------------------CACACACGCGCATAATGTTTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACA-ACTGTGAGCAA--CCAAC---A---GCA |
| droGri2 | scaffold_15252:13917089-13917209 + | CAGTTTTCACTCCCACAC-A-------------------------------CTCACACACACATGCATAATGCTTGAAATTTTGCACACATTTACAATATTTGTAAATGTGTTGAAAATCGTTTGCACA-ACTGTGAGCAAGCAACAC---A-CATGT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:20618351-20618477 - | TGGAATTCCGGGT-------------------GCC------GGCCATGTCGTAATTAGCGGAGCACGGCATC-GCCGGCGATAATTAATGACGGTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGC-ACCTCCCAAT |
| droSim1 | chr2L:20181621-20181747 - | TGGAATTCCGGGT-------------------GCC------GGTCATGTCGTAATTAGCGGAGCACGGCATT-GCCGGCGATAATTAATGACGGTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGC-ACCTCCCAGT |
| droSec1 | super_18:498537-498663 - | TGGAATTCCGGGT-------------------GCC------GGTCATGTCGTAATTAGCGGAGCACGGCATT-GCCGGCGATAATTAATGACGGTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGC-ACCTCCCAGT |
| droYak2 | chr2R:6966481-6966606 - | TGGAATTCCGGGT-------------------GCC------GGTCATGTCGTAATTAGCGGAGCACGGCGTT-GCCGGCGATAATTAATGACGGTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCACAGGC-ACCTCCA-GT |
| droEre2 | scaffold_4845:3835093-3835218 + | TGGAATTCCGGGT-------------------GCC------GGTCATGTCGTAATTAGCGGAGCTCGGCGTT-GCCGGCGATAATTAATGACGGTGGTCACGTTGGTTTCATGTCGATTTCATTTCAGGACACGGCCGCAGGC-GCCTCCA-CT |
| droAna3 | scaffold_12916:7118734-7118858 - | AAAAGTCCGGGGT-------------------CCA------GGTCATGTCGTAATTAGCAGGGCACAGAATT-GCCGGCGATAATTAATGACGTTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGC-TCCACCCA-- |
| dp4 | chr4_group3:7696584-7696728 + | GGGAGGTCAGAGAGCTAGAGGGGGGGCCAGGCGCC-----TGGCCATGTCGTAATTAGCAGGGTACAGCGTT-GCCGGCGATAATTAATGACGTTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGC-AGG--CAGAC |
| droPer1 | super_1:9142351-9142488 + | CAGAAAGCTA-------GAGGGGGGGCCAGGCGCC-----TGGCCATGTCGTAATTAGCAGGGTACAGCGTT-GCCGGCGAAAATTAATGACGTTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGC-AGG--CAGAC |
| droWil1 | scaffold_180708:2031441-2031569 - | TGGCCGGCTGACT-------------------CCC------CCTCAGGTCGTAATTAGCAGCGCACAACATTCGTCGGCGATAATTAATGACGTTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGCCAGCTCTGATG |
| droVir3 | scaffold_12963:13472850-13472962 + | C----------------------------------------AGCCGCGTCGTAATTAGCTGTGCACAACGTT-GCTGGCGATAATTAATGACTTTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGC-AGTTCCTGTG |
| droMoj3 | scaffold_6500:24709786-24709910 - | G-----TCCAG---------------------GCAGGACATGGACGCGTCGTAATTAGCTGTGCACAGCGTT-GCTGGCGATAATTAATGACGTTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGC-AGTTCCT-GT |
| droGri2 | scaffold_15126:6391659-6391788 - | TTGTGTCCTGG----------------------CAGGACATGGCCGTGTCGTAATTAGCTGTGCAGAACGTA-GCTGGCGATAATTAATGACGTTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGC-AGTTCCTGTG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:13613907-13614035 + | TAC------------------------GGTTTTTAGGTTGA-GTTTACAGTAAAATAAATATTTAAGTGGAGCCTGCGA---------CTT----------------------------------------CAGTCCCTCTGACTGACTGGGGTAAGTCACTTGAGCGTTTGTTGGCACGTAAAAGACATCATAATTAGCATT |
| droSim1 | chr3L:12997848-12997976 + | TAC------------------------GGTTTTTAGGTTGA-GTTTACAGTAAAATAAATATTTAAGTGGAGCCTGCGA---------CTC----------------------------------------CAGTCCCTCTGACTGACTGGGGTAAGTCACTTGAGCGTTTGTTGGCACGTAAAAGACATCATAATTAGCATT |
| droSec1 | super_0:5775586-5775714 + | TAC------------------------GGTTTTTAGGTTGA-GTTTACAGTAAAATAAATATTTAAGTGGAGCCTGCGA---------CTC----------------------------------------CAGTCCCTCTGACTGACTGGGGTAAGTCACTTGAGCGTTTGTTGGCACGTAAAAGACATCATAATTAGCATT |
| droYak2 | chr3L:13706954-13707082 + | TAC------------------------GGTTCTTAGGTTGA-GTTTACAGTAAAATAAATATTTAAGTGGAGCCTGCGA---------CTC----------------------------------------CAGTCCCTCTGACTGACTGGGGTAAGTCTCTCGAGCGTTTGTTGGCACGTAAAAGACATCATAATTAGCATT |
| droEre2 | scaffold_4784:13614855-13614983 + | AAC------------------------GGTTTTTAGGTTGA-GTTTACAGTAAAATAAATATTTAAGTGGAGCCTGCGA---------CTC----------------------------------------CAGTCCCTCTGACGGACTGGGGTAACTCACTTGAGCGTTTGTTGGCACGTAAAAGACATCATAATTAGCATT |
| droAna3 | scaffold_13337:21827571-21827739 - | TTC-CGGCACTCCGGCATTCCAGCTC-GGGTTTTAGGTTGA-GTTTACAGTAAAATAAATATTTAAGTGGAGCCTGCGACTCTG----CTACTGCC---ACTGCCACTGCCACTGCCACTGCCGCTC------------------------GGGGAGTCACTTGAGCGTTTGTTGGCACGTAAAAGACATCATAATTAGCATT |
| dp4 | chrXR_group8:6818889-6819024 - | TATCCG------------------TCGGGTTTTTAGGTTGA-GTTTACAGTGAAATAAATATTTAAGTGGAGCCTGCGACTGG---GACTC----------------------------------------CAG-----CTCTCCGACTGGGCTAACTCACTTGAGCGTTTGTTGGCACGTAAAAGACATCATAATTAGCATT |
| droPer1 | super_36:488140-488275 + | TATCCG------------------TCGGGTTTTTAGGTTGA-GTTTACAGTGAAATAAATATTTAAGTGGAGCCTGCGACTGG---GACTC----------------------------------------CAG-----CTCTCCGACTGGGCTAACTCACTTGAGCGTTTGTTGGCACGTAAAAGACATCATAATTAGCATT |
| droWil1 | scaffold_180698:607141-607313 - | TTT------------------------TTTTTTTAGGTTGAAGTTTACAGTAAAATAAATATTTAAGTGGAGTC---GACTGTGTCGACTACAGCCCGGACTACC---CGGACTGCTAGAACGACTCGGTTCCGACTCTTTTTCTGTCGGGGTAAAGTCACTTGAACGTTTGTTGGCACGTAAAAGACATCATAATTAGCATT |
| droVir3 | scaffold_13049:19817984-19818083 - | ---------------------------GTTTTTTAGGTTGA-GTTTACAGTAAAATAAATATTGAAGTGG---------------------------------------------------------------------------GCCT-GGGGAAGTCACTTGAACGTTTGTTGGCACGTAAAAGACATCATAATTAGCCGT |
| droMoj3 | scaffold_6680:7513468-7513568 - | G--------------------------GCTTTTTAGGTTGA-GTTTACAGTAAAATAAATATTGAAGTGGGCCC----------------------------------------------------------------------------GGGGAAGTCACTTGAACGTTTGTTGGCACGTAAAAGACATCATAATTAGCCGT |
| droGri2 | scaffold_15110:17555344-17555443 + | ---------------------------AGTTTTTAGGTTGA-GTTTACAGTAAAATAAATATTGAAGTGG---------------------------------------------------------------------------GCCT-GGGGAAGTCACTTGAACGTTTGTTGGCACGTAAAAGACATCATAATTAGCCGT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:19569882-19569987 - | TATTGG-CGCATTCATGCTGGGCTCTCAAAGTGGTTGTGAAATGCATT-TC----CGCTTTGCGCGGCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTATCGTACA |
| droSim1 | chr2L:19257947-19258052 - | TATTGG-CGCATTCATGCTGGGCTCTCAAAGTGGTTGTGAAATGCATT-TC----CGCTTTGCGCGGCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTATCGTACA |
| droSec1 | super_7:3184244-3184349 - | TATTGG-CGCATTCATGCTGGGCTCTCAAAGTGGTTGTGAAATGCATT-TC----CGCTTTGCGCGGCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTATCGTACA |
| droYak2 | chr2R:6066940-6067043 - | --TTGG-CGCATTCACGCTGGGCTCTCAAAGTGGTTGTGAAATGCATT-TC----CGCTTTGCGCGGCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTATCGTACA |
| droEre2 | scaffold_4845:4719792-4719897 + | TATTGG-CGCATTCATGCTGGGCTCTCAAAGTGGTTGTGAAATGCATA-TC----AGCTTTGCGCGGCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTATCGTACA |
| droAna3 | scaffold_12916:12013650-12013754 + | TATTGG-CACATTCCTGCTGGGCTCACAAAGTGGTTGTGAAATGCATT-TC----CATTTTGCCC-GCATATCACAGCCAGCTTTGATGAGCTTAGCGTTATGTATCGTACA |
| dp4 | chr4_group5:1152486-1152589 + | TATTGG-CACATTCATGCTGGGCTCACAAAGTGGTTGTGAAATGCATT-TT-----GCTTTGCCC-GCATATCACAGCCAGCTTTGATGAGCTCGGCGTAATGTATCGTACA |
| droPer1 | super_5:5559971-5560074 + | TATTGG-CACATTCATGCTGGGCTCACAAAGTGGTTGTGAAATGCATT-TT-----GCTTTGCCC-GCATATCACAGCCAGCTTTGATGAGCTCGGCGTAATGTATCGTACA |
| droWil1 | scaffold_180708:4284676-4284781 + | CA-CGA-CACATTCATGCTGAGCTCACAAAGTGGTTGTGAAATGCATTATT----TGCTTTATCCAGCATATCACAGCCAGCTTTGATGAGCTCTGCGTAATGTGAATTGCA |
| droVir3 | scaffold_12723:2960768-2960874 - | GATTGG-CACATTCATGCTGCGCTCTCAAAGTGGTTGTGAAATGCATT-TG--AAAGCTTTGCGC-GCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTCACGTACA |
| droMoj3 | scaffold_6500:6908308-6908415 + | -ATTGGCCACATTCATGCTGAGCTCTCAAAGAGGCTGTGAAATGCATT-TT-GAAAGCTTTGCGA-GCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTAACGTACA |
| droGri2 | scaffold_15126:521642-521748 + | --TTGG-CACATTCATGCTGCGCTCTCAAAGTGGTTGTGAAATGCATT-TTTGAAAGCTTTGCGC-GCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTAAACTACt |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:19569475-19569576 - | TGT---ACGATGTTGATTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCAACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGGAGACA |
| droSim1 | chr2L:19257527-19257628 - | CGT---ACGATGTTGATTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCAACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGGAGACA |
| droSec1 | super_7:3183838-3183939 - | CGT---ACGATGTTGATTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCAACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGGAGACA |
| droYak2 | chr2R:6066549-6066650 - | CGT---ACGATGTTGATTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCAACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGGAGACA |
| droEre2 | scaffold_4845:4720188-4720289 + | CGT---ACGATGTTGATTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCAACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGGAGACA |
| droAna3 | scaffold_12916:12013971-12014072 + | GGC---ACGATGTTGCTTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCAACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGGAAACA |
| dp4 | chr4_group5:1153071-1153173 + | TAT--TATGATGTTGCTTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCAACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGAAAACA |
| droPer1 | super_5:5560564-5560666 + | TAT--TATGATGTTGCTTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCAACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGGAAACA |
| droWil1 | scaffold_180708:4285049-4285146 + | --------GATGTTGCTTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCAACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGAAAACA |
| droVir3 | scaffold_12723:2960501-2960597 - | --------GATGTTGCTTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCGACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGAAAACA |
| droMoj3 | scaffold_6500:6908893-6908997 + | AGAAATTTGATGTTGCTTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCGACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGAAAACA |
| droGri2 | scaffold_15126:521944-522043 + | TT-----TGATGTTGCTTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCGACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGAGAACA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:8258601-8258707 - | CAAAATAACT-------AAAAACTTCAACTGTCTTCA-----------------------------------------AAGTGGCAGTGACATGTTGTC----------------------------AACAATATTCATATCACAGCC-A-GCTTTGAGGAGCGTTGCGGTTTTTCT---------CGTCCGGC----- |
| droSim1 | chr2L:8042700-8042806 - | CAAAAGAACT-------GAAAACTTCAACTGTCTTCA-----------------------------------------AAGTGGCGGTGACATGTTGTC----------------------------AACAATATTCATATCACAGCC-A-GCTTTGAGGAGCGTTGCGGTTTTTCA---------CGCCCGAC----- |
| droSec1 | super_3:3755253-3755359 - | CAAAAGAACT-------GAAAACTTCAACTGTCTTCA-----------------------------------------AAGTGGCGGTGACATGTTGTC----------------------------AACAATATTCATATCACAGCC-A-GCTTTGAGGAGCGTTGTGGTTTTTCT---------CGCCCGCC----- |
| droYak2 | chr2L:10894231-10894336 - | GGAAAAAG-T-------GAAAACTTCAACTGTCTTCA-----------------------------------------AAGTGGCGGTGACATGTTGTC----------------------------AACAATATTCATATCACAGCC-A-GCTTTGAGGAGCGTTGCGGTTTTTCT---------CGCCAACC----- |
| droEre2 | scaffold_4929:17167539-17167644 - | CGCAATAG-T-------GAAAACTTCAACTGTCTTCA-----------------------------------------AAGTGGCGGTGACATGTTGTC----------------------------AGCAATATTCATATCACAGCC-A-GCTTTGAGGAGCGTTGCGGTTTTTCT---------CGCCCGCC----- |
| droAna3 | scaffold_12916:6006043-6006142 + | CAGATTTTTT----TA-GGGAACTGCGACCCTCCTTA-----------------------------------------AAGTGGCGGTGACATGTAGCT----------------------------TTC-ATATTCATATCACAGCTTT-GCTTTCAGGAGCGTTGAGGTTTCTC----------------------- |
| dp4 | chr4_group3:3919027-3919154 + | CCCATGGGATACTATAGGAAAGCTGCGACGCTCTTTA-----------------------------------------AAGTGGCGGTGACGTGTTGGT----------------------------AATAATATTCATATCACAGCC-A-GCTTTGAGGAGCGTTGCGGCCCTTCTGAAAATATGCGCCTCATTGGGG |
| droPer1 | super_1:5401823-5401939 + | CCCATGGGATACTATAGGAATGCTGCGACGCTCTTTA-----------------------------------------AAGTGGCGGTGACGTGTTGGT----------------------------AATAATATTCATATCACAGCC-A-GCTTTGA-GAGCGTTGCGGCCCTTCTGAA-A----TATGCGCC----- |
| droWil1 | scaffold_180703:495398-495497 + | TGTAAATTAT-------AGAATTTATGATAGATTTTT-----------------------------------------AATCATGGT-----------------------TTGAGTCAAAATTAAACAAAAATAGTTTAAATAAAAGC-AAA-TATA-GTAATATTTTTGTTT--------------------T----- |
| droVir3 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | scaffold_6500:5445901-5446049 - | TTAACTCCCG----AA-AGTAGGCTCTATT--ATCTAAAGTCGTACATTAAATTTTGTTTAGTATACCTAAATGAATTATATGAAAGTGAAATATTTCCTCAATATTGGCTCGAATC----------AATAGT----GTGTTGCGGTA-A-ACCTTAAAGAAAAATCTG----------------------GAA----- |
| droGri2 | scaffold_15252:13434449-13434542 - | TTCAATAGCA----AG-GAAATTCTTGGTTTTCTTTT-----------------------------------------GTTTATCGGGAAAATGTTATA----------------------------TAA-ACCTATATATCTTT----A-TCTC-----------TAGATCTCTCA---------CTATTTGC----- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:19570167-19570279 - | ATCGAAAC-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGGCAAAA--------------A |
| droSim1 | chr2L:19258228-19258340 - | ATCGAAAC-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGGCAAAA--------------A |
| droSec1 | super_7:3184520-3184632 - | ACCGAAAC-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGGCAAAA--------------A |
| droYak2 | chr2R:6067209-6067321 - | ATCGAAGC-----------------------------------------AAGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTCTGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGACAAAA--------------A |
| droEre2 | scaffold_4845:4719511-4719623 + | ATCGAAGT-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGACAAAA--------------A |
| droAna3 | scaffold_12916:12013302-12013412 + | CC----AC-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCAATG-CTCAAGACAAAA-------------AA |
| dp4 | chr4_group5:1152145-1152298 + | ACCCAAAGAACCCAAAGCCTCGGGTCTCGGGGCCCCCGTGTCCGGGCCAAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACACGATG-CTCAAGACAAAA--------------G |
| droPer1 | super_5:5559630-5559783 + | ACCCAAAGAACCCAAAGCCTCGGGTCTCGGGGCCCCCGTGTCCGGGCCAAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACACGATG-CTCAAGACAAAA--------------G |
| droWil1 | scaffold_180708:4283205-4283312 + | ---GAGGC-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCAATGGCTCAAGTTA------------------ |
| droVir3 | scaffold_12723:2961084-2961203 - | AGCGAGAGA----------------------------------GAGAGAAAGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTACTCATATCACAGCCAGCTTTGAGGAGCGACACGATG-CTCAGCACAAAA--------------A |
| droMoj3 | scaffold_6500:6907804-6907929 + | GACCAAGA-----------------------------------------GAGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGC-TTTTTCTGCCTACTCATATCACAGCCAGCTTTGAGGAGCGACACGATG-CTCAGTACAAAATTCAAAACATGAAAA |
| droGri2 | scaffold_15126:521314-521426 + | GAGAGAGA-----------------------------------------GAGAGAATTGTGTCCTTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTACTCATATCACAGCCAGCTTTGAGGAGCGACACGATG-CTCAACACAAAA--------------A |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:11243451-11243582 - | TGCGT----CG-----------ACGTTACCTCGTAT-CTTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTCTGCATTTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAATGAGCAGCG------ATAGCA-AA-------------------------------------------ATGTG--------------ACC |
| droSim1 | chr3R:10237596-10237727 + | TGCGT----CG-----------ACGTTACCTCGTAT-CTTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTCTGCATTTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAATGAGCAGCG------ATAGCA-AA-------------------------------------------GTGTG--------------ACC |
| droSec1 | super_0:10704829-10704960 + | TGCGT----CG-----------ACGTTACCTCGTAT-CTTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTCTGCATTTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAATGAGCAGCG------ATAGCA-AA-------------------------------------------GTGTG--------------ACC |
| droYak2 | chr3R:15188346-15188476 + | TTCGT----CG-----------ACGTTACCTCGTAT-CTTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTCTGCATTTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAATGAGCATCG------ATAGTA--A-------------------------------------------GTGCG--------------ACC |
| droEre2 | scaffold_4770:10769593-10769723 - | TGTGT----CG-----------ACGTTACCTCGTAT-CTTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTCTGCATTTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAATGAGCATCG------ATGGCA--A-------------------------------------------GTGTG--------------ACC |
| droAna3 | scaffold_13340:12827820-12827951 - | TGCGTTTAGCG-----------ACGTATCTACGAAT-CTTACTTTCAATGTCATCAAAAAGGGCTGAAG--AGATATTTCTGCATTTGAAGTGTATCACAGCCAGCTTTGATGGGCATTGCAATAAGCCTAGATTCCGATTGAA-----------------------------------------------------------------A-C |
| dp4 | chr2:9824664-9824803 + | TGCGT----GCGTGCTTGCGTATCGGCACTTGGTATCCTTACTTTCAGTGTCATCAAAAATGGCTGAAGAAAGATATATTTGCATTTGAAGCGTATCACAGCCAGCTTTGATGGGCATTGCAATGAGCATCG------ATTGCA------------------------------------------------GTT--------------TCG |
| droPer1 | super_0:10660285-10660410 - | TGCGT----AT------------CGGCACTTGGTATCCTTACTTTCAGTGTCATCAAAAATGGCTGAAGAAAGATATATTTGCATTTGAAGCGTATCACAGCCAGCTTTGATGGGCATTGCAATGAGCATCG------ATTGCA-GT---------------------------------------------TT------------------ |
| droWil1 | scaffold_181089:2143458-2143641 - | TGTGT----GT---------------GA-ATTGCGT-CTTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTTTGCATTTGAAGCGTATCACAGCCAGCTTTGATGGGCATTGCAATGAGCATCGTT-----TTGCA-TTTTTCCCCTCATTATTCGCCACACACTCTGGGAGTACCAGCCAACAGAGACAGAGAGCGAGCGAC- |
| droVir3 | scaffold_13047:13335413-13335531 + | TGT---------------------------ACATGT-CTTACTTTCAATGTCATCAAAAAGGGCTGA-GAATGATATATCTGCAATTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAAAGGGCAACG-------TAGCAGAA-------------------------------------------AAGTA--------------ACA |
| droMoj3 | scaffold_6540:10568085-10568205 + | CATGC-------------------------TTG-GT-CTTACTTTCAGTGTCATCAAAAAGGGCTGA-GAATGATATTTCTGTAATTGAATTGTATCACAGCCAGCTTTGATGGGCACTGCGAAGGGCGAAG-------TAACA-GT-----------------------------------------AACATTA--------------ACA |
| droGri2 | scaffold_14906:4357869-4357995 - | TGTGT----GT-----------TTGTGTGTACATGT-CTTACTTTCAATGTCATCAAAAAGGGCTGA-GAATGATATATCTGCAATTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAAAGGGCAATG-------TAGCA-AA-------------------------------------------AAGAG----------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:15549085-15549183 - | GCCA-C------------CTAA-GGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTC--AAT-------CT----CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCG--------------TCG |
| droSim1 | chr2R:14254518-14254616 - | ACCA-C------------CAAA-GGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTCC--AAT-------CT----CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCG--------------TCG |
| droSec1 | super_1:13063812-13063910 - | ATCA-C------------CAAA-GGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTC--AAT-------CT----CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCG--------------TCG |
| droYak2 | chr2R:13623606-13623704 + | ACCA-T------------CAAA-GGTCCTGATCCTGGGATGCATCTTGTGCAGTCATGTTTC--CAT-------CT----CACATCACTGGGCAAAGTGTGTCTCAAGATCTTGGCCACTTCG--------------ACG |
| droEre2 | scaffold_4845:9749329-9749427 - | ACCC-A------------CCAA-GGTCCTGATCCTGGGATGCATCTTGTGCAGTTATGTTTC--TAT-------CT----CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACTTCG--------------ACG |
| droAna3 | scaffold_13266:9731210-9731313 + | GCCC-C------------CAACTGGCTACGATCTTGGGACGCATTTTGTGCAGTTATGCACC--AAA-AATA------TATCCATCACTGGGCAAAGTGTGTCTCAGGATCTTGGCCATCTCA--------------ACG |
| dp4 | chr3:12677741-12677846 - | ACGA-CGA--------TACCGA-GGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTA--CGTGATCA------TCCTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCA--------------A-- |
| droPer1 | super_2:8905820-8905925 + | ACGA-CGA--------TACCGA-GGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTA--CGTGATCA------TCCTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCA--------------A-- |
| droWil1 | scaffold_180701:1651920-1652025 - | TCGA-A------------TTTA-GACCATGATTTTGGGATGCATTTTGTGCAGTTATGTCTTCATGTGATAATTCT----CTCATCACTGGGCAAAGTGTGTCTCATAATTTTGGTAACCATA--------------T-- |
| droVir3 | scaffold_12875:4111929-4112038 + | AATAAAAATACCAGAATCTCAT-AGCTCTGCTTTTGGGATGCATTTTGTGCGGTTATGTCTG--CCT-------CCAAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCTACC-------------------- |
| droMoj3 | scaffold_6496:20936961-20937077 - | AACT-C------------TCGC-AGCTCTACTTTTGGGATGCATTTTGTGCAGATGTCTAAC--GAT-------TGGAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGGGGCAACTAGCACAAAGGAGGAGTGTTT |
| droGri2 | scaffold_15112:2109003-2109099 - | AATT-T------------TCAT-AGCTCTGCTTTTGGGATGCATTCTGTACAGTAATGTTGA--CTCTTGTA------AAACCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCAA---------------------G |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:4260197-4260296 - | AAAACC-AAATTGATATCTTGGTTTAGGTTTCAC-AGGAAACTGGTTTAATAACGAAAA----------CTAGTTTCCTCTAAAATCCTAATCAAGACATCATGTGTCGTCG |
| droSim1 | chrX:3275244-3275342 - | AAAACC-AATGTGATCTCTTGCTTTGGCATT-AA-AGGAAGCTAGTTTAATTACGAAAA----------CTAGTTTCCTCTAACGTTTCAAACAATACATCATGTGTCGTCG |
| droSec1 | super_4:2464323-2464421 + | AAAACC-AATGTGATCTCTTGCTTTGGCTTT-AA-AGGAATCTAGTTTGATTACGAAAA----------CTAGTTTCCTCTAAGGTTTTAAACATTACATCATGTGTCGTCG |
| droYak2 | chrX:4177737-4177835 + | GAACTCAAATAATCTGCCTTGCTTAGAATTTTAA-GAGCAAAAAGTTTGTTTACAAAAA----------CTATTTACCCCTAAAATTCTAATCTAGTCAGCATTAT--TTCG |
| droEre2 | scaffold_4690:1630987-1631073 - | GAACCA-AAAAATGTGCTTTGTTTAGAATTTTAGCGAGGAATCATTACAAATATGGATGTGAACTTAAAGTACTCACTGCAAG------------------------AAACG |
| droAna3 | Unknown | ---------------------------------------------------------------------------------------------------------------- |
| dp4 | Unknown | ---------------------------------------------------------------------------------------------------------------- |
| droPer1 | Unknown | ---------------------------------------------------------------------------------------------------------------- |
| droWil1 | scaffold_181150:2098814-2098829 + | AAA------------------------------------------------------------------------------------------------TCATTCGTCAACT |
| droVir3 | Unknown | ---------------------------------------------------------------------------------------------------------------- |
| droMoj3 | Unknown | ---------------------------------------------------------------------------------------------------------------- |
| droGri2 | Unknown | ---------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:15402977-15403094 + | GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TAAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT |
| droSim1 | chrX_random:4023795-4023912 + | GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT |
| droSec1 | super_73:137399-137516 + | GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT |
| droYak2 | chrX:9589334-9589451 + | GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT |
| droEre2 | scaffold_4690:11631458-11631575 - | GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT |
| droAna3 | scaffold_12929:2899093-2899202 - | -----------ATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGCCATTTGACGGACTCACTTTGCAACTGGAGATTGCTCGAGACTGCGGCATATGCCACAAAGT |
| dp4 | chrXL_group1a:977383-977495 + | ------ACTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGGCATTTGACACACTCACTTTGCAACTGGAGATTGCTCGAAACTGCGGCACATGCCACA--TT |
| droPer1 | Unknown | ------ACTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGGCATTTGACACACTCACTTTGCAACTGGAGATTGCTCGAAACTGCGGCACATGCCACA--TT |
| droWil1 | scaffold_180702:1593181-1593292 - | -------TTGTATCTGTAACATTGATTAATCTCAATTTGTAAATGTGAGCGATTTAAATCCATTCGATGCACTCACTTTGCAATTGGAGATTGCTCGAGATTGCAGCATATGCCACA--TT |
| droVir3 | scaffold_12970:2048738-2048856 + | TTGTTAAACTTATCTGCAGCATTGATTAATCTCAATTTGTAAATGTGAGCGATTTTAAAGTATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGATTGCAGCTTATGCCACA--TA |
| droMoj3 | scaffold_6359:3259146-3259264 + | GTCCAACTCTTATCTGCAGCATTGATTAATCTCAATTTGTAAATGTGAGCGATTTTTAACTATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCAGCATATGCCACA--TT |
| droGri2 | scaffold_14853:6952274-6952391 - | TTGTTAACT-TATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATTATTAAGAATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGATTGCAGCATATGCCACA--TT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:7425957-7426059 + | GTAT--------CAAC-----------------------------------TGTCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTGTC-TCGTAACCCGGCACATGTTGAAGTACACTCAATATGAGGCGATTTGCAT----------------AC |
| droSim1 | chr2L:7217527-7217627 + | GTAT--------CA-C-----------------------------------TGTCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTGTC-TCGTAACCCGGCACATGTTGAAGTACACTCAATATGAGGCGATTTGCAT----------------AC |
| droSec1 | super_3:2941418-2941520 + | GTAT--------CAAC-----------------------------------TGTCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTGTC-TCGTAACCCGGCACATGTTGAAGTACACTCAATATGAGGCGATTTGCAT----------------AC |
| droYak2 | chr2L:5473614-5473716 - | GTAT--------CAAC-----------------------------------TGTCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTGGC-CCGTAACCCGGCACATGTTGAAGTACACTCAATATGAGGCGATTTGCAT----------------AC |
| droEre2 | scaffold_4929:16344683-16344785 + | GTAT--------CAAC-----------------------------------TGTCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTGGT-CCGTAACCCGGCACATGTTGAAGTACACTCAATATGAGGCGATTTGCAT----------------AC |
| droAna3 | scaffold_12916:15334141-15334251 + | GTATTTTTGAGAAATA-----------------------------------TGTCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTCCA-CCGTAACCCGGCACATGTTGAAGTACACTCAATATGAGGCGAATGTCAA----------------AC |
| dp4 | chr4_group1:4175881-4175974 + | G----------------------------------------------------TCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTGTC-CTGTAACCCGGCACATGTTGAAGTACACTCAATATGTGGCGAAGTTCGT----------------GC |
| droPer1 | super_5:1086315-1086408 - | G----------------------------------------------------TCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTGTC-CTGTAACCCGGCACATGTTGAAGTACACTCAATATGTGGCGAAGTTCGT----------------GC |
| droWil1 | scaffold_180772:5257378-5257513 - | GATT--------CT-CTTTTTTTTTTATTGGCATTTTTAATTTATTGTTGTTGTCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTCCGTTTGTAACCCGGCACATGTTGAAGTACACTCAATATGTGGCGATCTTCAT------------------ |
| droVir3 | scaffold_12963:15419827-15419927 - | GTTT--------CA-------------------------------------TGTCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTGAC-TTGTAACCCGGCACATGTTGAAGTACACTCAATATGCGTTGATTTGCAT----------------TT |
| droMoj3 | scaffold_6500:18399247-18399346 - | GTGT--------C----------------------------------------TCCCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTCAG-TGGAAACCCGGCACATGTTGAAGTACACTCAATATGCGGTGATTTGCAGTT--------------GC |
| droGri2 | scaffold_15126:5008540-5008648 + | ------------------------------------------------------CTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTCAC-TCGTAACCCGGCACATGTTGAAGTACACTCAATATGCGGTGATTGGCATTTGCTGCGTTTTAATTAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:16698389-16698503 + | GTGAATAG-TTTAAA------AG--------------TCCACTC-G-----ATGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTTGA--CATTTTGGGGGTCACTCTGTGCCTGTGCTG-----CCAGTGGGACATA-ATCTACA----AATA-------------A |
| droSim1 | zdv96e12.b1:525-640 + | GTGAATAG-TTTAAA------AG--------------TCCACTC-G-----ATGGCTCAGGTACTTAGTGACTCTCAAT--------GCCTTTGA--CATTTTGGGGGTCACTCTGTGCCTGTGCTG-----CCAGTGGGACATA-ATCTACA----AATA-------------A |
| droSec1 | super_7:345406-345520 + | GTGAACAG-TTTAAA------AT--------------TCCACTC-G-----ATGGCTCAGGTACTTAGTGACTCTCAAT--------GCCTTTGA--CATTTTGGGGGTCACTCTGTGCCTGTGCTG-----CCAGTGGGACATA-ATCTACA----AATA-------------A |
| droYak2 | chr2R:4404548-4404662 - | GTGAAAAG-TTTTAA------AG--------------TCCACTC-G-----GTGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTTGA--CATTTTGGGGGTCACTCTGTGCCTGTGCTG-----CCAGTAGGACATA-ATCCACA----AATA-------------A |
| droEre2 | scaffold_4845:19768040-19768155 + | GTGAATAG-TTTAAG------TG--------------TCCACTC-G-----GTGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTTGA--CATTTTGGGGGTCACTCTGTGCCTGTGCTG-----CCAGTGGGACGCA-ATCAACA---AAATA-------------A |
| droAna3 | scaffold_12916:15864848-15864962 - | GTGAAAGT-GCCAGA------AG--------------TCCACTT-G-----GTAGCTCAGGTACTTAGTGACTCTCAAT--------GCATTTGA--CATTTTGGGAGCCACTTTGTGCCTGGGCCA-----TCAGTGCGACTAT-ATCTTCT----ATTA-------------A |
| dp4 | chr4_group3:8443802-8443917 + | GTGATTTA-TCTACA------AG--------------CACACTTTG-----CCGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTCGA--CATCTTGAGAGTCTCTCTGTGCCTGCACTG-----GCGGTGGTGCAAC-TGCAACG----ATTA-------------A |
| droPer1 | super_1:9894921-9895036 + | GTGATTTA-TCTACA------AG--------------CACACTTTG-----CCGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTCGA--CATCTTGAGAGTCTCTCTGTGCCTGCACTG-----GCGGTGGTGCAAC-TGCAACG----ATTA-------------A |
| droWil1 | scaffold_181132:873705-873839 - | GTGACTATACAAAGTGATACGAG--------------TTATCTCTGCCTAAACAGCTCAGGTACTTAGTGACTCTCAAA--------GAATATATATAGACTTGAGAGACGCTCTGTACCTAGACTGTTGTGTCTGCGGAATGTC-AACATCA----TGTG-------------T |
| droVir3 | scaffold_12963:12863192-12863320 - | GTGCTG--------A------ACTC-CTCCCGCCCTGCACACCC-C-----GCTGCTCAGGTACTTAGTGACTCTCAATCATCTATTGCTTTGCA--TACCTTGAGGGTCGCTCTGTGCCTGTGCCG-----CCTGTGCTGCACA-ACCAACG----ACGA-------------G |
| droMoj3 | scaffold_6500:7201931-7202062 + | ATTCATGA-TGTCC-------AG--------------CACACGC-T-----GCAGCTCAGGTACTTAGTGACTCTCAATCACATATTGCTTTGCA--TACTTTGAGGGTCGCTCTGTGCCTGTGCCG-----CCCGTGTTGCACACAGCCACA----CA---ATTGTGA-ATTCG |
| droGri2 | scaffold_14978:830883-831041 + | GTGTTAAA-TGTGGAAAAACCAATCCAATCCG--CTGCACACGT-T-----GCTGCTCAGGTACTTAGTGACTCTCAATTCAACATTGTATTGCA-CGCCTTTGAGGGTCGCTCTGTGCCTGTGTTG-----CACGTGTTGCATT-CACACCATCCGAGTGATTTGTGTCCTTTG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:5508741-5508858 - | AAGT---------TAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC |
| droSim1 | chr2R:4140609-4140726 - | AAGT---------TAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAGC |
| droSec1 | super_1:3126041-3126158 - | AAGT---------TAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAGC |
| droYak2 | chr2L:18140631-18140748 - | AAGT---------TAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC |
| droEre2 | scaffold_4929:8848869-8848986 + | AAGT---------TAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC |
| droAna3 | scaffold_13266:12795467-12795585 - | AAGT---------TAG--CAGCCTTTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACAAGAC |
| dp4 | chr3:14135687-14135806 - | AAGT---------TCGGGTCGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGC |
| droPer1 | super_4:1183061-1183180 + | AAGT---------TCGGGTCGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGC |
| droWil1 | scaffold_180701:3433650-3433765 - | ---T---------TAA--CA-CA-TTTTGCCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTTATAATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGT |
| droVir3 | scaffold_12875:5789441-5789560 - | AAAT---------AAACCGAACA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTAGTT-CGATTTGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAGTATCCACTAAGC |
| droMoj3 | scaffold_6496:24271667-24271782 + | AAAC---------TA----AGAA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATTCGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGC |
| droGri2 | scaffold_15112:722942-723066 - | AAAATAAAAGAACT----AAACA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATTTGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAGAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:5508724-5508873 + | TT--------CACTGGTGCCAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-GCTGC--TAACTTTGCA-------------------------TCGGTTTCACT- |
| droSim1 | chr2R:4140592-4140741 + | TT--------CACTGGTGCCAGTTAGCTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-GCTGC--TAACTTTGCA-------------------------TCGGTTTCACT- |
| droSec1 | super_1:3126024-3126173 + | TA--------CACTGGTGCCAGTTAGCTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-GCTGC--TAACTTTGCA-------------------------TCGGTTTCACT- |
| droYak2 | chr2L:18140614-18140763 + | CT--------CACTGGTGCCAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-GCTGC--TAACTTTGCA-------------------------TCGGTTTCACT- |
| droEre2 | scaffold_4929:8848853-8848999 - | TA--------TTTTG----TAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-GCTGC--TAACTTTGCA-------------------------TCGGCTTCACTT |
| droAna3 | scaffold_13266:12795452-12795608 + | TTAA------CATT----CTAGTTAGTCTTGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAAGGCTGC--TAACTTTC----------------GTTTCGGAT--TGGGGTTCACTG |
| dp4 | chr3:14135673-14135829 + | TA--------TTCTTTTGTCCG---GCTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-GCGACCCGAACTTTTTCTCAGTTTTCA-----------------GTTTTCACT- |
| droPer1 | super_4:1183038-1183202 - | TGAATCACTATTCTGTTGTCCG---GCTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-GCGACCCGAACTTTTTCTCAGTTTTCA-----------------GTTTTCACT- |
| droWil1 | scaffold_180701:3433631-3433773 + | GTAATAAAT---C---TTTCATTGAACTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATTATAAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGGCAAAAT-GT-GT--TAAG----------------------------------TTCTATAA- |
| droVir3 | scaffold_12875:5789437-5789575 + | ---------------------GTTGGCTTAGTGGATACTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCAAATCG-AACTAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-GTT----------------------CGGTTTATTTT---GTCACTTTTGCACT- |
| droMoj3 | scaffold_6496:24271651-24271794 - | TC--------TATTGGT-----TTAGCTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCGAATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-TCT----TAGTTTT-----------CT--------T---G--TTGTTTTTATT- |
| droGri2 | scaffold_15112:722926-723081 + | TC--------GCCTGTCGCCTGTTTTC-TTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCAAATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-GTT---------------TAGTTCTT---TTATTTTTATT--TAATTTTTTCT- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:10103292-10103384 - | AACACG--TCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGTTTTGCAATCCAAATCACAGGATTATACTGTGAGATGACCAGCGTG---CCA |
| droSim1 | chr2R:8866656-8866748 - | CACACG--TCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGTTTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTG---CCA |
| droSec1 | super_1:7611688-7611779 - | CA--CG--TCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGTTTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTG---CCA |
| droYak2 | chr2R:10041132-10041224 - | CACACG--TCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCCTTTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTG---CCA |
| droEre2 | scaffold_4845:15739235-15739330 + | CACACG--TCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGTTTTGCAAATCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCCGCCA |
| droAna3 | scaffold_13266:5819955-5820045 + | CA--TG--TCTCGTCGCCTCGCAGTATATTTTTGTGTTTTGTTTGG-TTTGAAACTCAAATCACAGGATTATACTGTGAGATGCCAAGCGTG---TCA |
| dp4 | chr3:16336992-16337078 - | --------TCTTGACGCCTCGCAGTATATTTTTGTGTTTTGTTGTG-TCTGAAACGCAAATCACAGGATTATACTGTGAGATGCTGGGCGTG---CTA |
| droPer1 | super_4:426256-426345 + | G---CG--TCTTGACGCCTCGCAGTATATTTTTGTGTTTTGTTGTG-TCTGAAACGCAAATCACAGGATTATACTGTGAGATGCTGGGCGTG---CTA |
| droWil1 | scaffold_180700:1860929-1861010 + | AGACTA--TTCTTGCGTCTCGCAGTATATTTTTGTGTTTTGTTCAATTTGTCAACTCAAATCACAGGATTATACTGTGAGCTGC-------------- |
| droVir3 | scaffold_12875:17605293-17605383 + | AACGCA--T-TCGATGTCTCGCAGTATACTTTTGTGTTTTGTTTAT-TTTGAAAATCAAATCACAGGATTATACTGTGAGTTATCGGCTGTA---GCA |
| droMoj3 | scaffold_6496:11229058-11229148 + | AACACA--T-TCGATGTCTCGCAGTATATTTTTGTGTTTTGTTTAT-TATAAAAATCAAATCACAGGATTATACTGTGAGTTATCGGCTGAA---ACA |
| droGri2 | scaffold_15245:14076242-14076330 - | CCCACCACTGTCGATGTCTCGCAGTATATTTTTGTGTTTTGTTTATTTTTGAAAATCAAATCACAGGATTATACTGTGAGTTATC------G---CCA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:15549196-15549294 - | AA-------GTTT---GGAATAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCA------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACGA--------------C-GACC |
| droSim1 | chr2R:14254629-14254727 - | AA-------GTTT---GGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCA------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACGA--------------C-GACC |
| droSec1 | super_1:13063923-13064021 - | AA-------GTTT---GGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCA------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACGA--------------C-GACC |
| droYak2 | chr2R:13623487-13623590 + | AA--GCAAAGTTT---GGAACAG-CAATTATACGACAAACCTTGTTCTGTTTTGCCA----------------ATTTCCT------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACGA--------------C-GACC |
| droEre2 | scaffold_4845:9749440-9749538 - | GA-------GTTT---GGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCT------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACGA--------------C-GACC |
| droAna3 | scaffold_13266:9731105-9731197 + | GA-----------------AGAT-C-ATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCT------A--GCAGCACTGGGTAAAGTTTGTCCTATAATCTATAAAAAA--------G-----CCGTCC |
| dp4 | chr3:12677873-12677971 - | AA-------CTAT---CTCGGAA-CTATTATACGATAAACTTTGTTCAGTTTTGCCA----------------ACTTGCT------T--GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTAA--------G-----C-GATC |
| droPer1 | super_2:8905688-8905793 + | AAAAACGAACTATCTCGGA---A-CTATTATACGATAAACTTTGTTCAGTTTTGCCA----------------ACTTGCT------T--GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTAA--------G-----C-GATC |
| droWil1 | scaffold_180701:1652063-1652174 - | A---------TTT---CATATAA-T-ATTATATGATAAACTTTGTTCAGTTTTGCAATCAAAAAATCAAGAAAA-TTCCT------TA-GCATCACTGGGTGAAGTTTGTCTTATAATCTTTAAACTA--------------C-AATC |
| droVir3 | scaffold_12875:4111798-4111897 + | TA---------------TAACAA-ATATTATATGGTAAACTTTGTTCAGTTTTGCCA----------------GGCTCTT-TTTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGCAAAAAGA--------------A-CAGC |
| droMoj3 | scaffold_6496:20937092-20937209 - | TA-------TACA---AGAACAGAATATTATAAGGTAAACTTTGTTCAGTTTTGCCG----------------GGTTCTATGTTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCG--AAACGAAACAGCAAGGAAAAA-GTCC |
| droGri2 | scaffold_15112:2109131-2109231 - | AA-------ATAT---ATAATTA-C-ATTATATGGCAAACCTTGTTCAGTTTTGACA----------------ACTTTGTTTCTGTGCATCATCACTGGGTGAAGTTTGTCGTATAATC--GAAATG-----------------GATC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:16471242-16471360 - | AAAAGTGTTT------GC----G-----------------------AAAACATAAACATTTGCAGGGC-GGGTCGTGTGTCAGTGTATTTAT-------------ATCT-TAGC----------TATATTGCACACTTCCCGGCCTTTAAATGTCCA---ATGTTTCAACATT-------------TAAATCT----- |
| droSim1 | chr2R:15132542-15132660 - | AAAAGTGCTT------GC----A-----------------------AAAACATAAACATTTGCAGGAC-GGGTCGTGTGTCAGTGTATTTAC-------------TTCT-TAGC----------TATATTGCACACTTCCCGGCCTTTAAATGTCCA---ATGTTTCAACTTT-------------AATATCT----- |
| droSec1 | super_1:14025465-14025583 - | AAAAGTGCTT------GC----A-----------------------AAAACATAAACATTTGCAGGAC-GGGTCGTGTGTCAGTGTATTTAC-------------TTCT-TAAC----------TATATTGCACACTTCCCGGCCTTTAAATGTCCA---ATGTTTCAACTTT-------------AATATCT----- |
| droYak2 | chr2R:12724925-12725037 + | CTT-------------GC----A-----------------------AATACACAAACATTTGCAGGAC-GGGTCGTGTGGCAGTGTATTGAT-------------TTCT-TAGC----------TATATTGCACACTTCCCGCCCTTTAAATGTCCA---GTGTTTCGACTTG-------------GATATCT----- |
| droEre2 | scaffold_4845:10616419-10616531 - | CTT-------------GC----A-----------------------AATACACAAATATTTGCAGGAC-GGGTCGTGTGTCAATGTATTGAT-------------CTCT-TAGC----------TATATTGCACACTTCCCGCCCTTTAAATGTCCA---GTGTTTCAACTTG-------------AATATCT----- |
| droAna3 | scaffold_13266:4133041-4133158 + | AATAGC----------------------------------------AAAACATAAACACTTGCAGGAC-GGGGAGCGTGACAATATATATAT-------------TTTA-TAAA--------CATATATTGCACACCTCCCGGCCTATAAGTGTAAA----TGTTCCTACAGG-------------TAAAACTTCTAA |
| dp4 | chr3:8679992-8680133 + | ATTATAGTGT------GCGGAGTATGTGCTGTGTAT--T-------TGTACACCAACATTTGTGCGTCTAAGATCTGT-GCAGTATATACAT-------ACATAG-AA-TACAA----------AATATTGCAGACTTCTCAGACTACAAATGTGAA---CTGTCTGGTCTTC-------------AAAAAAT----- |
| droPer1 | super_4:2566796-2566912 + | CTGTGCATTT------G-------------------------------TACACCAACATTTGTTCGTCTAAGTTCTGTG-CAGTATATACAT-------ACATAG-TT-TAAAA----------AATATTGCACACTTCTCAGACTACAAATGTGAA---CTGTCTGGTCTTC-------------AAAA-------- |
| droWil1 | scaffold_180700:3453399-3453550 + | GAAGGAGTCAATGACCAC----A-----------------------AATTTTCAAACATTCTTTGGAC-GGACTT-GT-CAAATATGTTTGG-------ATATAAAATT-CAACAATTGGACAACATATTGATCAAAACCGGGCCAAAAATTGTTGG---AAAATTCTTCAAAGTTGTTGGACTTGACAATTT----- |
| droVir3 | scaffold_12875:13668721-13668866 - | AAAACAATTT------GG----TAAATACTGCGCATAGCCTTGCGCCTTATGTAATCATTTTTAGGCC-GTGCTCTGTGTGAATATGTTTTT-------------AACTATAAT----------CATATTGCACATCTCCCGGCCTATAAGTGTAGATGCATAATTCATCAAA-------------TATAAAT----- |
| droMoj3 | scaffold_6496:9090283-9090389 - | TGT--------------------------------------------------ATCCATTTTTAGGCC-GTGCTATGTGACAATATGTATTT-------AAATTG-TA-TTTAT----------CATATTGCACATCTCCCGGCCTACAAGTGTAAATGCACAATTCAACT----------------ATGTAC----- |
| droGri2 | scaffold_15245:17564471-17564548 + | C--------------------------------------------------------------AGGAT-GGAAGCTGTGACAATATGTAGGTTTTAATTAATTTA-TA-TTTCA----------TATATTGCACACCTCCCGGCCTATAAATG--------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:16471367-16471480 - | TGAAAA-----------------A-TCG---AAATTTCTAGATCATTTTTCGGA--CGGTATATGGGTTAATATTTCAT------------TTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCA-A--GAATT-------AACATC-----------------------------------GAA---AAG |
| droSim1 | chr2R:15132667-15132782 - | TGAAAA-----------------A-TCG---AAATTTCTAGATAATTTTTCGGA--CGGTATATGAGTCAATATTTTCT----------TTTTTTCGAATATATTGCACATTCACCGGCCTGAAAATATCA-A--GAATT-------AGCATC-----------------------------------GAA---AAA |
| droSec1 | super_1:14025591-14025696 - | GAAA------------------------------TTTCTAGATAATTTTTCGGA--CGGTATATGAGTCAATGTTTTCT------------TTTTCGAATATATTGCACATTCACCGGCCTGAAAATATCA-A--GAATT-------AGCATC-----------------------------------GAA---AAA |
| droYak2 | chr2R:12724807-12724923 + | TTTAAA-----------------AA-TATCTCACTTTCTAGATAGTTTTGCGGA--CGGTATCTGCGTCAATATTTCCT------------TGTTAGAATATATTGCACATTCACCGGCCTGAAAATATCA-A--GGACT-------TGCATC-----------------------------------GAA---AAG |
| droEre2 | scaffold_4845:10616532-10616644 - | TTGAAA-----------------C-CCC---TA-ACCCTAGATAGTTTTTCGGA--CGGTATCTGCGTCAATATTTCCT------------TGTTAGAATATATTGCACATTCACCGGCCTGAAAATATCA-A--GGACT-------TACATC-----------------------------------AAA---AAG |
| droAna3 | scaffold_13266:4132915-4133034 + | AGAGAA-----------------A-TAT---TTGTTGCCAGATTATCTTCAGGA--CGGTATTTGTGTCAATATGGATA-------------TTTCAAACATATTGCACTTATACCGGCCTGATGATCTCC-G--GCGCTCGTCATCTGTGAC-----------------------------------TAA---AAG |
| dp4 | chr3:8679876-8679985 + | CATCGA-----------------GC-TGCTTTGATTTGTA-----------GGC--CGTGGTTCTTGCAAATACGGATT---------------CATAACGTATTGCACTAGCCCCGGTCCAAAAAACAAT-A--GCAA-CGCC---GGCAAC-----------------------------------AGCAAAGTA |
| droPer1 | gnl|ti|732560583:591-697 + | CATCGA-----------------GC-TGCTTTGATTTGTA-----------GGC--CGTGGTTCTTGCAAATACGAATT---------------CATAACGTATTGCACTAGCCCCGGTCCAAAAAACAAT-A--GCAA-CGCC---GGCAAC-----------------------------------AGC---AAA |
| droWil1 | scaffold_180700:3453290-3453392 + | TAAT-------------------------------TTATA-----------GGCTTCGGGGT-TGTTGCAAAATGGTTTATTCT-----AATAACTCCCCATATTGCACCTTTTCCGGCCTCTAAATTAACTTTTG-----------AACATCCCG--------------------------------GGT---GGG |
| droVir3 | scaffold_12875:13668876-13669002 - | GAAAAA-----------------C-TAG-TGCGTCCGCATGACCATTTTAAGGA--CGGTATTTGTGACAATATGTGCAG-TTAAATCAATTTGTTTAGCATATTGCACATCTCCCGGCCTAAAAATGAAC-C--GTGCT-------CTCTTC-----------------------------------GAT---ATA |
| droMoj3 | scaffold_6496:9090405-9090568 - | AAACGAAAAATGTCAAATTTTCAGC-TG---------------CGTTTGCAGGA--CGGTATTTGTGACAATATGAATTATTGAAATCAATTTATTCAGCATATTGCACATCTCCCGGCCTATAAAACAGT-T--GTGA-GCCC---GTCGAT---TTAAATGATTTGTGTATTTAAAATAAATTTTCACC-----A |
| droGri2 | scaffold_15245:17564385-17564474 + | AAAT-------------------------------TTGCAGTTCGTGTTTAG------T-----------GTTTTTTCC------------CGCTTAAGCATCTTGCAAATTATATGGCTTGCAGTTATCT-G--CATTA-------ACCATT-----------------------------------TTC---AGG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:16471546-16471641 - | AATTAAGTT-TGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATT--TTTTAACTAGTATTGCACTTGAGACGGCCTGATTA--CTTTA-----AAACGAATC |
| droSim1 | chr2R:15132834-15132929 - | AATTAAGTT-TAAAGCGTTTTGGTTCGTCACAAGGGCAATTCTGCATT--TTTAAACTTGTATTGCACTTGAGACGGCCGAATTA--CTTTA-----AAAAGAATC |
| droSec1 | super_1:14025748-14025843 - | AATTAAGTT-TAAAGCGTTTTGGTTCGTCACAAGGGCAATTCTGCATT--TTTAAACTTGTATTGCACTTGAGACGGCCGAATTA--CTTTA-----AAAAGAATC |
| droYak2 | chr2R:12724685-12724781 + | AATTGCGTT-TGAAGCGCTTCGGTTCGTCCCAGGAGCAATTCTGCACTA-TTAAAGCTAGTATTGCACTTGAGACGGCCGGATTA--CTTTT-----AAACGAATC |
| droEre2 | scaffold_4845:10618147-10618242 - | AATTAAGTT-TGAAGCGCTTCGGTTCGTACCAGGAGCAATTCTGCATT--TTTAAGCTAGTATTGCACTTGAGACGGCCGGATTA--CTTTT-----AAACAAAAC |
| droAna3 | scaffold_13266:4132676-4132765 + | TCTACAAT--------TTTCCGGTGCGTCTCTAGTGCAACTCTTGGTTT-TTTATACAAGTATTGCACTTGAGACGGCCGAAATA--TAGTG-----GATCTAAGC |
| dp4 | chr3:8679756-8679828 + | G---------------------------------GGCAATACTGTGTTGTATTTCACCAGTATTGCACACCCACTGGCCTGAAAGTGCCTACTGCTGGGTTCAACA |
| droPer1 | gnl|ti|732455623:23-94 + | G---------------------------------GGCAATACTGTGTTGTATTTGAACAGTATTGCACACCCACTGGCCTGAAAGTGCCTACTGCTGGGTTCAA-- |
| droWil1 | scaffold_180700:3453141-3453235 + | CATAAACTCGAAAATTTTTTAGGTTCGTTTAGTCTGCAAATT-GTAAT--ATACGAAAATAATTGCACACTTCACGGCCGGAAAA--GTTCA-----AGTTAAACA |
| droVir3 | scaffold_12875:13669041-13669063 - | AGCTATATT-T-----------------------------------------------------------------------------TTCA-----GGCCGTGTC |
| droMoj3 | scaffold_6496:9090603-9090622 - | GTCTGCAAT-TTAAGCTTCTT------------------------------------------------------------------------------------- |
| droGri2 | scaffold_15245:17564268-17564358 + | AAGCAAATC-TTCAGTTTTTCGGCTGTGGTTAGTGTCAATTCTTTTT---ATTTGACAAGCATTGCACTCTTCACGGCCGGATAA--AT---------GAGGGTCT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:16471680-16471780 - | TCGTTCT--AGCCAACAA---TTTTCTGCTGCGGATGGGGGCAGTACTG--------------------------TTTTTTTAACATT--GAGTATTGCACTTTTCACAGCCCG-----AAAATGTTAGCAACTGC-CTT |
| droSim1 | chr2R:15132971-15133071 - | TCGATCT--AGCCAACAA---TTTTCTGCTGCGCATTGGGGCACTACTG--------------------------TTTTTTTTAAATT--GAGTATTGCACTTTTCACAGCCTT-----AAAATGTTAGCAACTGC-CTA |
| droSec1 | super_1:14025885-14025985 - | TCGATCT--AGCCAACAA---TTTTCTGCTGCGCATTGGGGCACTACTG--------------------------TTTTTTTTTAATT--GAGTATTGCACTTTTCACAGCCTT-----AAAATGTTAGCAACTGC-CTA |
| droYak2 | chr2R:12724540-12724640 + | TCTACGT--AGCCAACAA---TTTTCGGCTGTGGATTGGGCTAGTACTG--------------------------TGATTTTAGCATT--AAGTATTGCACATTCCCCAGCCTG-----AAAGTGTTAGTAACTGC-CAA |
| droEre2 | scaffold_4845:10618281-10618381 - | TCGATGT--AGCCAACAA---TTTTCGGCTGTGGAGTGGGCTAGTACTG--------------------------TGATTTTAACATT--GAGTATTGCACATTCCCCAGCCTG-----AAAGTGTTTGCATTTGC-CAA |
| droAna3 | scaffold_13266:4132526-4132623 + | TTT--GT--AGTCAGCAT---TTCCAGACTGTGGTTTGGGCAGATACTA--------------------------CATTTT--AGGAT--CAGTATTGCACATTCCCCAGCCTG-----GAAACGCTTGCGACAGA-CCT |
| dp4 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------- |
| droPer1 | super_4:2566453-2566554 + | TTCGTGTTCGGTGGATAC---CTTCAAGCTGGGGGATGGG-CAATACTG--------------------------TGTTGTATTTGAA--CAGTATTGCACACCCACTGGCCTG-----AAAGTGCCTACTGCTGG-GTT |
| droWil1 | scaffold_180700:3452993-3453102 + | TTAATTATTTGTCCAAATTTAGTTCTGGCTGCGGTTTGTGCAAATTACT---T----------------------ATTTT--TTTGTA--AAGTATTGCACAACCTACAGCCTGGCACTAAATGGAGAAAAATCAT-CAA |
| droVir3 | scaffold_12875:13669100-13669187 - | T---------------------TTTCGGCTGTGGTCAGTGTCAATTCTT--------------------------TTTTTTTATTTTTACAAGTATTGCACTTTTCACGGCCGG-----AAAAATTGAGATTCCATTTAA |
| droMoj3 | scaffold_6496:9090655-9090750 - | TTT--TT--TGCATTCGT---TTTCCGGTTGTGAATTGTGTCAATTCTT--------------------------TTTATTTTAC-----AAGTATTGCACTTTTCACGGCCGG-----AAAAAGGATAAAATATT-TAA |
| droGri2 | scaffold_15245:17564118-17564229 + | TCATTAT--CCCGAACAA---CATCATTCCGCGCTCGGCTTTAGAATTTGTTCCTTATTTTGTGAGGATAATTTACAATTC--GAAGA--TAATAT-----------TGGC-AG-----GATATG-TTACAGTTCC-TCT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:11766097-11766216 + | TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAACTTACCTAGTTGAGGAAA-----ACTCCC-ATG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT |
| droSim1 | chr3L:11131600-11131719 + | TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AGTCCC-GTG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT |
| droSec1 | super_0:3951120-3951239 + | TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AGTCCC-GTG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT |
| droYak2 | chr3L:11794902-11795021 + | TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AACCCC-ATG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT |
| droEre2 | scaffold_4784:11743709-11743828 + | TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAG-----AATCCC-ATG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT |
| droAna3 | scaffold_13337:6019503-6019620 + | TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AATC-A--GT-TTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT |
| dp4 | chrXR_group8:4342117-4342235 - | TGGTCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----ACTC-CGA-A-ATGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAAATCGCATT |
| droPer1 | super_29:576219-576337 - | TGGTCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----ACTC-CGA-A-ATGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAAATCGCATT |
| droWil1 | scaffold_180949:2570151-2570270 - | TAGTTCGTACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AATTCA-ATG-TTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT |
| droVir3 | scaffold_13049:23988146-23988266 + | TGGTTCGTGCTCTTATCGTAACTTGTGTGGCTT-GAATGTACCTGGTTGAGGAAC----GAATTCA-ACGTTTGGATTTTGTTGCCTTTGGTATTCGAGCCAATAAGTTCGGCCACCGGTTCACATT |
| droMoj3 | scaffold_6680:18619757-18619881 + | TAGGTCGGGCTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTCGTCGAGCGAAAAGCGAATTCA-TTG-TTGGATTTTGTTGCTCTTGGTATTCGAGCCAATAAGTTCGGCAACCAGTTCGCATT |
| droGri2 | scaffold_15110:9705224-9705329 - | TATTTCCAGCTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTGGCTAAGGAAA--------------G-TTGGATTTCC------TAGGTATTCGAGCCAATAAGTTCGGCAGCGGGTTCGCATT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:18854056-18854169 + | GAGTTCCTTC------------ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTG-TTTACC---AGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCAACGCTG----- |
| droSim1 | chr3L:18159364-18159477 + | GAGTTCCTTC------------ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG-TTTACC---AGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTCTCATCGCTG----- |
| droSec1 | super_19:820227-820338 + | GAGTTCCTTC------------ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG---TACC---AGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCATCGCTG----- |
| droYak2 | chr3L:21787014-21787126 - | GAGTTCCG-C------------ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTA-TTTAAC---AGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACATTG----- |
| droEre2 | scaffold_4784:18670595-18670707 + | GAGTTCCTAC------------ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCT-ATTA-TCTAAC---AGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACGCTG----- |
| droAna3 | scaffold_13337:18585473-18585582 - | GAGCTCCTAA------------ATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAA-ATTATT---AGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAAC--------- |
| dp4 | chrXR_group6:4103840-4103943 - | G---------------------CCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA-TTAACC---AGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACATT------ |
| droPer1 | super_9:2393048-2393151 - | A---------------------CCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA-TTAACC---AGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACATT------ |
| droWil1 | scaffold_180955:104826-104946 + | GGTTTGCTTATTTGCCCA---TCTGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTACTTTATC---AGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGAGCCTGTCAACA-------- |
| droVir3 | scaffold_13049:18083575-18083698 - | CATTTCCTTCCTACCTCACAAAACGGACGCCTATATCATTTTGATTGTTGCTCAGAAAGCCCTG--CA-TTCAAT---ACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCCTAACTACGTTT----- |
| droMoj3 | scaffold_6680:23648550-23648660 - | ----------------------ACGGACCCTTATATAATTTTGATTGTTGCTCAGAAAGCCCGTAA---TTTAACTTAACATGGCTTTCGAGTAATAATCGAAACCAAATAAGGCATCCAAACATCATTTTGTCA |
| droGri2 | scaffold_15110:24135484-24135597 - | CAGCCAACTACT----------ATGGACGCTCATATAATTTTGATTGTTGCTCAGAAAGCCTTT--CA-CTTGAC---ACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCCTAACTACAATT----- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:21661799-21661917 - | GAAAA--------------------------------------------GTGGATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTCAGCGATT------------------------------TGCA------------------------------------ |
| droSim1 | chr3L:21004826-21004944 - | GAAAA--------------------------------------------GTGGATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCCCAGCGACT------------------------------TGCA------------------------------------ |
| droSec1 | super_11:1581867-1581985 - | GAAAA--------------------------------------------GTGGATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCCCAGCGACT------------------------------TGCA------------------------------------ |
| droYak2 | chr3L:18849495-18849613 + | GAAAA--------------------------------------------GTGGATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGACCAGCGATT------------------------------TGCA------------------------------------ |
| droEre2 | scaffold_4784:21318808-21318933 - | GAAA-------------------------------------TACACAAAGTGGATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAACAACGACAGGAAAGGGAAAAAGGCGTATTCACTATGAGTTTGGCCAGCGACT------------------------------TGCA------------------------------------ |
| droAna3 | scaffold_13337:3985740-3985858 - | CAAGA--------------------------------------------ACATATATTC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTAATTCAAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGGTCAACATTT------------------------------CGTC------------------------------------ |
| dp4 | chrXR_group6:4548558-4548677 + | GTAAA----------------------------------A-TATACAAAG-----ATC-AAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGATCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTATCCAACAA---------------------------------ACA------------------------------------ |
| droPer1 | super_9:2845596-2845715 + | GTAAA----------------------------------A-TATACAAAG-----ATC-AAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGATCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTATCCAACAA---------------------------------ACA------------------------------------ |
| droWil1 | scaffold_180698:1092691-1092806 + | ATATA--------------------------------------------ATGTATGTAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTTAACTAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTAATCAACAAAT------------------------------T--------------------------------------- |
| droVir3 | scaffold_13049:24266823-24266971 + | ATATC--------------------------------------------TTTGATCTATAAAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATT-GAGCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAATTTGTTCAACCAATCTGTTTAAACACCTATTCAATGAAAAGAAATGCT------------------------------------ |
| droMoj3 | scaffold_6680:18891183-18891347 + | GATCTA--ACTGAATCGATTTT--------------------------------TATATAAAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGACGTTTTATT-GAACAACGGCAGGGAAGGGAAAAAGGCGTATTTACTATGAATTATTTCAACGATA------------------------------TAAAAATTTCTATTAAAATAATAATCAGAGTGAGAGAGGG |
| droGri2 | scaffold_15110:9482044-9482193 - | TACCAGAGACTAAA-CATTTTGTGTATAAGTATTGTATGATTAAGCAATC-----TTC-AGAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATT-GAGCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAATGTAATCAACAA------------------------------------------------------------------------ |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:5916833-5916954 + | AA----GC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGG-CATCCT-TGCTGCACCA-------------CA- |
| droSim1 | chr3R:15459127-15459249 - | AA----GC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGG-CATCCTTTGCTGCTCCA-------------CA- |
| droSec1 | super_0:15996573-15996694 - | AA----GC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGG-CATCCT-TGCTGCTCCA-------------CA- |
| droYak2 | chr3R:9963959-9964079 + | AA----GC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGG-CGTCCT-TGCTGCTCCAG--------------- |
| droEre2 | scaffold_4770:15683457-15683577 - | AA----GC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGG-CGTCCT-TGCTGCTCCAG--------------- |
| droAna3 | scaffold_13340:6479980-6480089 + | AA----GC------TCATTT---G-------------TGTGCATCGGCTGCTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TTG-CATCCT-TTC----------------------- |
| dp4 | chr2:5029980-5030116 - | AA----GC---------TCTTCCGTGTCTCGTGTCTCTGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATATGGTGCAAGCAAGTGAACACAGCTGGTGGTATCCAATGGCCGTT--CTG-CAACAA-TGCAACATCAGC---------AACAA |
| droPer1 | super_19:735499-735629 - | AA----GC---------TCTTCCGTGTCTCGTGTCTCTGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATATGGTGCAAGCAAGTGAACACAGCTGGTGGTATCCAATGGCCGTT--CTG-CAACAA-TGCAACATCAG--------------- |
| droWil1 | scaffold_181089:11180051-11180176 - | AA----GCTTTCTAGATTCTTC---------------TGTGCAACTGCCACTGGGATAC-ACCCTGTGCTCGCTTTGAATATTGTGCAAACAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTTTTG-CATCCA-TGCAACACCA---------------- |
| droVir3 | scaffold_12855:2698510-2698638 - | AA----GC---------TTTTTC--------------AGTGCAATTGCCGCTGGGATAC-ACCCTGTGCTCGCTTTGAATT--GTGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT---GGCAGCCAA-TGCAACAATTGCAACAACTGCAACA- |
| droMoj3 | scaffold_6540:11898843-11898966 - | GAGTAAGC----------TTTCT-----------CTCTGTGCAATTGCCGCTGGGATAC-ACCCTGTGCTCGCTTTGAGTT-TATGT-TGCAAGTGAACACAGCTGGTGGTATCCAGAGGCCGTT---GACAGCCAA-TGCAACAACAGC---------A--A- |
| droGri2 | scaffold_14624:2253109-2253242 + | AAA-AAGC---------TTTTCGC-------------TGTGCAATTGCCACTGGGATATTGCCCTGTGCTCGCTTTGAATATTGTGTAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGG-CGCACA-TGCAACAACAACAACAAGAGCA--A- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:6234009-6234106 + | G-------TCCTT--CGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACAC-T--TCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCA |
| droSim1 | chr3R:15159142-15159239 - | G-------TCCTT--CGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACAC-T--TCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCA |
| droSec1 | super_0:15709308-15709405 - | G-------TCCTT--CGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACAC-T--TCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCA |
| droYak2 | chr3R:10262524-10262621 + | G-------TCCTC--CGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCGCAC-T--ACAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCA |
| droEre2 | scaffold_4770:15383893-15383990 - | G-------TCCTC--CGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACAC-T--TCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCA |
| droAna3 | scaffold_13340:867198-867296 - | G-------TCCTC--CGGTTTCAATTTGTGGGATACACACGGTTCAGTTGTGTCACTTTT--GCGAGCATCACTGGGCTTTGTTTATCTCATAAGACTGAAATTTGTTCA |
| dp4 | chr2:7233334-7233438 - | CGTGTGCCTCTTT--TGGTTTCAATTTATGGGATGCACCAAGTTCAGTTTTGTCACAT-T--TCGAGCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTGATTCA |
| droPer1 | super_0:1094016-1094113 - | C-------TCTTT--TGGTTTCAATTTATGGGATGCACCAAGTTCAGTTTTGTCACAT-T--TCGAGCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTGATTCA |
| droWil1 | scaffold_181108:652-751 + | G-------TCAGA--CGGTTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCGCAT-TCCACGAGCATCACTGGGCTTTGTTTATCTCATAAAGGAGAAATGAATACA |
| droVir3 | scaffold_13047:1194317-1194415 + | T-------GATTT--GGATTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCAGATGT--CCAAGCATCACTGGGCTTTGTTTATCTCATAAGAGTGAAATTTGTTCA |
| droMoj3 | scaffold_6540:5225327-5225427 + | G-------TGATTAAGGATTTCAATTTATGGGATACACTAAGTTCAGTTTTGTCAGATGT--CCAAGCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTTGTTCA |
| droGri2 | scaffold_14906:5077291-5077389 - | G-------ATTTC--GGATTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCAGATGT--CCAAGCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTAGTTCA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:13671285-13671406 - | CGATC---------------GTAT--ATC---AACTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAGCGAG---ATC------------------------------------------ |
| droSim1 | chr2R:12409842-12409963 - | CGATC---------------GTAT--AGC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAGCGAG---ATC------------------------------------------ |
| droSec1 | super_1:11168758-11168879 - | CGATC---------------GTAT--AGC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAGCGAG---ATC------------------------------------------ |
| droYak2 | chr2R:15512007-15512128 + | CGATC---------------GTAT--AGC---ACCTCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTT--GAAGATCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACACTCAGCGAG---ATC------------------------------------------ |
| droEre2 | scaffold_4845:7899182-7899303 - | CGATC---------------GTAT--AGC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGCTTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAGCGAG---ATC------------------------------------------ |
| droAna3 | scaffold_13266:10515593-10515725 + | CGATC---------------ATAT--AGCCAAGAATCTGTTGTT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAACGAATTT--TGAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAACAAG---ATCGAAACTCT---------------------------------- |
| dp4 | chr3:16483204-16483318 - | CG---------------------T--ACC---GCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGATCTT--TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACAGTCAACA-G---ATC------------------------------------------ |
| droPer1 | super_4:278992-279106 + | CG---------------------T--ACC---GCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGATCTT--TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACAGTCAACA-G---ATC------------------------------------------ |
| droWil1 | scaffold_180700:4557862-4557981 - | CA-TC---------------ATCATTAT-----CATCTGTTTTTCGAATTGGCAAGATGTCGGCATAGCTGATA-------AT-ATTTTTAGAAAAGCGCTATGCTGCATCTAGTCAGTTTATTCAATAGAGCAATCGACAATATTATC------------------------------------------ |
| droVir3 | scaffold_12875:16937652-16937767 - | ---TC---------------GCCT--C-----GCATCTGTTGTT-CAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGCATTT--TTATAGCGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACAATCAACAAA---A-------------------------------------------- |
| droMoj3 | scaffold_6496:11065442-11065572 + | CTATATTTATAAATATTTCGGTTT--ATC---GCATCTATTGTT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTCAAAGCGCAT-T--GCATAGCGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACAGTCAACA-------------------------------------------------- |
| droGri2 | scaffold_15245:16476618-16476778 - | CTCTC---------------GCGA--TTC---TCATCTGTTGGT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGCATCT---TATAGCGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACACTCAACA-T---ATCCATAC-CTGAAATGCTTAGAAACTTGGAGTATCTACGGATTA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:8887323-8887479 - | TCGCTCCACGT-----------TAGACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CACAGCGGATCGAACATTTTATCGTCCGAAAAA---------------------------ATGTGAT---TATT---TTT--GAAAA------GCGGCTATGCCTCATCTAGTCAATTGCATTACTTTGACTCTATCAGCGTTG |
| droSim1 | chrX:7083953-7084109 - | TCGCTCCTCGT-----------TAGACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CACAGCGGATCGAGCCTCTTATCGTCCGAAAAA---------------------------ATGTGAT---TATT---TTT--GAAAA------GCGGCTATGCCTCATCTAGTCAATTGCATTACTTTGACGCTATCAACGTTG |
| droSec1 | super_34:250169-250325 - | TTGCTCCTCGT-----------TAGACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CACAGCGGATCGAGCCTCTTATCGTCCGAAAAA---------------------------ATGTGAT---TATT---TTT--GAAAA------GCGGCTATGCCTCATCTAGTCAATTGCATTACTTTGACGCTATCAACGTTG |
| droYak2 | chrX:12425680-12425836 + | TTTCTCCTCGT-----------TAGACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CACAGCGGATCGAGCCTTTGATCGTCCGAAAAA---------------------------ATGTGAA---TATT---TTT--TAAAA------GCGGCTATGCCTCATCTAGTCAATTGCATTACTTTGACTCTATCAGCGTTG |
| droEre2 | scaffold_4690:6225295-6225451 + | TCGCTCCTCGT-----------TAGACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CACAGCGGATCGAGCCTCTTATCGTCCGAAAAA---------------------------ATGTGAA---TATT---TTT--GAAAA------GCGGCTATGCCTCATCTAGTCAATTGCATTACTTTGACACTATCAACGTTG |
| droAna3 | scaffold_13047:712420-712562 - | AT---CCTCG------------AAGACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CACAGAGGATCGAGCGAGTCATCGACCGAGACG---------------------------A----------------ATT--CCAAA------GCGGCTATGCCTCATCTAGTCAATTACATTACTTTGACACTTTCCACGAGG |
| dp4 | chrXL_group1e:8162325-8162445 - | GTGT-CCT----------------GACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CAAAA-------------------------------------------------------A---GAAGATGA-----TTT--GAAAT------GCGGCTATGCCTCATCTAGTCAATTGCATTCATTTGATTCTATCAACGATG |
| droPer1 | super_13:404315-404435 + | GTGT-CCT----------------GACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CAAAA-------------------------------------------------------A---GAAGATGA-----TTT--GAAAT------GCGGCTATGCCTCATCTAGTCAATTGCATTCATTTGATTCTATCAACGATG |
| droWil1 | scaffold_181150:794468-794638 + | TCACGAAT-----GTG---ATGAAAACAACTAGTGGATTTGGCAAGATGTCGGAATAGCTGAAAGTCACACAAAATCA----------------------TAAAATGTTTGCCGTTTTGTTATTGT-TGTGAA-----T-TTTATTGATTTCAAAAATTACGGCTATGCCTCATCTAGTCAATTGCATTAGTTTGATTAAGTCAAC--TG |
| droVir3 | scaffold_12726:2775742-2775905 - | TTGCAGCACATATATATAAATATAGACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CACAAAG--TC----------------------ATA-AAT----CCAGAATTTCTATT-T-TGTGTA-----TTTTTATTGAGTACA------GCGGCTATGCCTCATCTAGTCAATTGCATTCATTTGACAAAAGCAACG--- |
| droMoj3 | scaffold_6473:5711141-5711289 + | GTGGTCCTCG----------------CAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CACAAA-TATC----------------------ATAGAAT----CCAGAATTTATATT-T-TGTGTA-----T-TTTATTGAGTACA------GCGGCTATGCCTCATCTAGTCAATTGCATTCATTTGACAGCAGCAAC---C |
| droGri2 | scaffold_15203:6378282-6378443 - | TCGACCACCAT--TTGCACCCGCAAACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGACAG-CACAA--GATC----------------------ACA-AAT----CAAGAAACTTTATT-T-TGTGTA-----TTTTTATTGAGTACA------GCGGCTATGCCTCATCTAGTCAATTGCATTCATTTGAC---ATCAACAACG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:19791046-19791174 + | CTG-----AGTGCCACCAGACTCT--------TCCT-CTGGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGTC-------------------CCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACATA-CAAC------------GCCG---AATG------ |
| droSim1 | chr3L:19083102-19083230 + | CTG-----AGTGCCACCAGACTCC--------TCCT-CCGGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGTC-------------------CCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACACA-CAAC------------GCCG---AATG------ |
| droSec1 | super_29:452742-452870 + | CTG-----AGTGCCACCAGACTCT--------TCCT-CCGGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGTC-------------------CCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACACA-CAAC------------GCCG---AATG------ |
| droYak2 | chr3L:20771315-20771443 - | CTG-----AGTGCCACCAGACTCT--------TACT-CCAGAGATGTCACGAAGGTGCATTGTAGTCGCATTGTCTGTC-------------------CCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACAAA-CAAC------------GCCG---AGTG------ |
| droEre2 | scaffold_4784:19550563-19550691 + | CTG-----AGTGCCACCAGACTCT--------CACT-CCAGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGTC-------------------CCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACAAA-CAAC------------GCCG---AGTG------ |
| droAna3 | scaffold_13337:19456783-19456919 - | CCG-----AATACCAGCAGACACTATACACCCGCCC-TCGGAGATGTCACGCAGGTGCATTGTAGTCGCATTGTCTGTC-------------------CCACTT---GC-TCCAGGCAATACAACTGCAGTGCAAGCTCTGTGCATTTCACAAA-CAAC------------GCCA---ACTT------ |
| dp4 | chrXR_group6:5913809-5913939 + | AAA-----AACCAAACCAAACACT-----------C-CCGGAGATGACACGCAGGTGCATTGTAGTCGCATTGTCTGTC-------------------CATCTT---GATTTCAGGCAATACAACTGCAATGCAAGCTCTGTGCATTTCATAAATCAAC------------GCCGTCCAATG------ |
| droPer1 | super_47:413986-414116 + | AAA-----AACCAAACCAAACACT-----------C-CCGGAGATGACACGCAGGTGCATTGTAGTCGCATTGTCTGTC-------------------CATCTT---GATTTCAGGCAATACAACTGCAGTGCAAGCTCTGTGCATTTCATAAATCAAC------------GCCGTCCAATG------ |
| droWil1 | scaffold_180698:8572488-8572628 + | CGG-----AACCTAAACAAAT------------------TGAAGTTACACGAAGGTGCATTGTAGTCGCATTGTCTGTGCTCCAAAAAAAAAAAACCCCCAGTT-T-CTATTCAGGCAATACAACTGCAGTGCAAGCTTCGTGTGACTTATAAG-CAAC------------GGCA---AATA------ |
| droVir3 | scaffold_13049:22941104-22941227 - | CCA-----AAATC----CGACA-----------TCT-CTGGAGCTGTTACGGAGGTGCATTGTAGTCGCATTGTCTGTC-------------------TCAAAT-TTGC-CCGCGGCAATACAACTGCAGTGCAAGCTCCGTGCAGTTCACACG-CAAC------------GTCG---GAAG------ |
| droMoj3 | scaffold_6680:17552824-17552948 - | CAG-----CATTCCGACA---------------TCT-TTGGAGCTGTGACGGAGGTGCATTGTAGTCGCATTGTCTGTA-------------------TCCTTTATTCT-CTGCGGCAATACAACTGCAGTGCAAGCTCCGTGCAGTTCACTCG-CAAC------------GTCG---GACA------ |
| droGri2 | scaffold_15110:18214439-18214590 - | CTCTGCACAGTTAGGGCAGACA-----------TCTCCAGGAGCTGTCACGAAGGTGCATTGTAGTCGCATTGTCTGTC-------------------CAAAAA-TTGC-ATGCGGCAATACAACTGCAGTGCAAGCTCCGTGCAGTTCACTAG-CAACAACTCTTTGATCGCTG---ATCGATCTGA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:5926643-5926771 + | CAAACAA-GTATTC------TTAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACAA----TTCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAA----------CTTATAA--- |
| droSim1 | chr3R:15449371-15449500 - | CAATCAAAGTATTC------TCAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACAA----TTCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAA----------CTTATGG--- |
| droSec1 | super_0:15986833-15986962 - | CAATCAAAGTATTC------TCAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACAA----TTCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAA----------CTTATAG--- |
| droYak2 | chr3R:9974454-9974582 + | CAATCAA-GTATTC------TCAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACAA----TTCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAA----------CGTACTC--- |
| droEre2 | scaffold_4770:15673299-15673427 - | CAATCAA-GTATTC------TCAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TC--ATTGC-TTGTGACAA----CTCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAA----------CGTACTC--- |
| droAna3 | scaffold_13340:6489967-6490093 + | TAATTCA-GTTACC------TCAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCTGG-------TGCTCGTTGGCAATTAATTCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAGAGCAA----------CTTA------ |
| dp4 | chr2:5019555-5019683 - | AAATCCA-GAAAAT------TCAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAAAAT--ATTGC-CTTTGACCA----TTCACAGCCACTATCTTCACTGCCGCCGCGACAAGCCATAACAA----------CG-ATAA--- |
| droPer1 | super_19:724982-725124 - | AAATCCA-GAAAAT------TCAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAAAAT--ATTGC-CTTTGACCA----TTCACAGCCACTATCTTCACTGCCGCCGCGACAAGCCATAACAACGATAAGCAACATATAATCG |
| droWil1 | scaffold_181089:11166523-11166648 - | TAAC------AT--------TCTATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TTAAATTGC-CAA-AACAA-TAAACCACAGCCACTATCTTCACTGCCGCCGCGACAGGCCATGACAA----------CAATCGG--- |
| droVir3 | scaffold_12855:2682541-2682664 - | AAAAAAA-ATTACCTTAAATCCGATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTGGCCAA-T------------TGACAA----ATCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTATGACAG----------CAAA--A--- |
| droMoj3 | scaffold_6540:11883356-11883481 - | CGAAAAA-ATACCCTTTAATCCGATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTGGCCAC-T------------TGAAAA----ATCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTATGACAC----------CGAGAGA--- |
| droGri2 | scaffold_14624:2267430-2267555 + | AAACCAA-ATTCCAT-----TGAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTGGCCAA-C------------TGACAA----ATCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTATGACACCAATAA-----ATATAA--- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:5516298-5516464 - | AAACAAATCGATATGGTGAGTGC---AG-GC----------------TGTTTAT----------TGCGGCGCTGTTTACTGTTTACGATC------GCACTGGAAGTGCGCTTTCCGGCGCCTTTGGAAGCCAG-----------------------------------------CACTCAAGTTTCCTTCATTGTTTTCCTTTCTTTCCCCTCTCTCTCTC------C---CCGCAGGCAGCTTATACCGAG |
| droSim1 | chrX:4275639-4275796 - | AAACAAATAGAAATGGTGAGTGC---AG-GC----------------TGTTTAT----------TGCGGCGCTGTTTACTGTTTACGATC------G---------TGCGCTATTCGGCGCCTTTGGAAGCCAG-----------------------------------------CACTCAAGTTTCCCTCATTGTTTTCCTTTCTTCCCCCCCTCTCTCTC------C---CCGCAGGCAGCTTACACCGAG |
| droSec1 | super_4:1240682-1240837 + | AAACAAATAGAAATGGTGAGTGC---AG-GC----------------TGTTTAT----------TGCGGCGCTGTTTACTGTTTACGATC------G---------TGCGCTATTCGGCGCCTTTGGAAGCCAG-----------------------------------------CACTCAAGTTTCCCTCATTGTTTTCCTTTCTTTCC-CCCTCTCTCA-------C---CCGCAGGCAGCATACACCGAG |
| droYak2 | chrX:2953226-2953406 + | AAACAAATCGATATGGTGAGTGC---AG-GC----------------TGTTTAT----------TGCGATGCTGTTTACTGTTTACAACCGCTTTCGCACTGGAAGT-CGGTTTTCGGCGCCTTGGAAAACCAA-----------------------------------------CACTCAAGTTTCCTTCTTTGTTTTCCTTTTCTCTCCCTCTCTCTCTTTCTCTCTCTGTCGCAGGCCGCTTACACCGAG |
| droEre2 | scaffold_4690:2867616-2867787 - | AAACAAATCGATATGGTGAGTGC---AG-GC----------------TGTTTAT----------TGCGGCGCTGTTTACTGTTTACGGTC------GCACCGCAAGT-CGCTTTTCGGCGCCTTGGAAAACCAA-----------------------------------------CACTCAAGTTTCCCTCTTTGTTTTCCTTTCTTCTCCCTCTCTCTCTCACTCTCT---TCGCAGGCAGCTTACACCGAG |
| droAna3 | scaffold_13117:2022234-2022400 + | AAACAAATCGATATGGTAAGTGCGTGAA-GTAGGCAACATGACACTTTGTATAT----------TTGACAACAATTGAATGTTTACGGG--------------ACCTC--CTATTTCCCGC-TTCGGCAGCAACGA-TG-----------ACGACGAC-----------------GACTCATGTTTTCCT--TTGTTTTGTTGTT---------------------------TTTCAGGCAGCTTACACCGAG |
| dp4 | chrXL_group1a:8129365-8129509 - | CAACAAATCGATATGGTAAGTGGGCTGA-AC----------------AGTA-AT------------TGATATCGTGGCCAATATATAGCCGCT-ACGTATCGTATG---------------------------------------------GCTTTTCCACTGAGTTTTGCTGGGAGCTAATGTGTTCTT--TTGTT--TGG-T------------------------T---TTACAGGCAGCTTACACCGAG |
| droPer1 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | scaffold_12928:4987995-4988105 + | T---CAATCAATATGGTAAGTTGGCCAAAAT----------------TGTT-GTTGCT------TTT------------ACGACACGTACATT-GTTTAT--------------------------AGTGTGTTTATTCTTGCTACTTT--------------------------------------------------TGC-A------------------------T---TTACAGGCAGCTTACACCGAG |
| droMoj3 | scaffold_6359:3485302-3485418 + | -------TCAATATGGTAAGTTGGC-ACAGC----------------TGTT----------------------------------------------------------GCTATT-----TTTTAGAGAGCAAATA-ATATGTTTCGTTTGTTTTTACAATTG----------------------------------------TTGTCTTTTTCTCTTGTTA------T---TTACAGGCAGCATACACCGAG |
| droGri2 | scaffold_14853:9687493-9687620 + | CATTAAATCAACATGGTAAGTTGTATAA-AT----------------CTATTTTTGCAGCTATCTGCAGCATTGTGTGCACTATATACACATT-AAT----------------------------GAGTGTAATAA-TTTTGTTGTTTT--------------------------------------------------TGT-T------------------------T---TTACAGGCAGCTTACACCGAG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:857527-857647 + | CATCCGAAACCC-------------------------------CTTCCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---AT-----------C---ATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG-ACTAAAGCGCCACGTGG--T |
| droSim1 | chr2L_random:38968-39087 + | CATCCGAATCC--------------------------------CTCCCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---AT-----------C---ATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG-ACTAAAGCGCCACGTGG--T |
| droSec1 | super_14:828161-828280 + | CATCCGAATCC--------------------------------CTCCCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---AT-----------C---ATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG-ACTAAAGCGCCACGTGG--T |
| droYak2 | chr2L:841557-841670 + | CATCCGAGTC------------------------------------CCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---AT----------------GCCTAGTAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG-ACTAAAGCGCCACGTGG--T |
| droEre2 | scaffold_4929:914698-914811 + | CACCACC------------------------------------ATCCCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---AT----------------GCCTAGTAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG-ACTAAAGCGCCACGTCG--A |
| droAna3 | scaffold_12916:2746986-2747121 + | CCACGGAAA------------------AGACACCCCACGGAAA-CGAGGGGCAGCGAATTACTTGGGCCAAGGGAATTCAAACTGTG---AT-----------CGCAATGCTAGAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG-TTGCAAACGCCACGTGG--T |
| dp4 | chr4_group3:5649077-5649230 + | CATCCAAGGCCTGTGCCTGTGTCTGAGAGCCCACCCACCCGAA---TAGGGCAGCGAATTACTTGGGCCAGGGGAATTCAAACTGTG---AT-----------CGCAATGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCTC-AAGTAAACGCCACGTGGGTT |
| droPer1 | super_1:7140235-7140385 + | CATCCAAGGCCTGTGCCTGTGCTTGAGAGCCCACCCACCCGAA---TAAGGCAGCGAATTACTTGGGCCAGGGGAATGCAAACTGTG---AT-----------CGCAATGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCTC-AAGTAAACGCCACGTGG--- |
| droWil1 | scaffold_180772:2278802-2278947 - | AATTTAAAACCGTTTTCCATTTC-------------ATTT---TTTGGGGGCAGCGAATTACTTGGGCCAAGGGAATTCAAACTGTG---AAT-----TATTTCAAAATGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGTACAATTGCGACACGTGG--T |
| droVir3 | scaffold_12963:19405390-19405507 + | CATTCAAAGT------------------------------------TCGGGCAGCAAATTACTTGGGCCAAGGGAATGCAAACTGTC---AA-----------CGCATTGCAATAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCA-AC-ATAACGCCACGTGG--T |
| droMoj3 | scaffold_6500:23808221-23808350 - | TGTTCAGTGTATGCTC---------------------------CTGCAGGGCTGCGAATTACTTGGGCCAAGGGAATGCAAACTGTTCGAAA-----------AGCATTGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCG-A-TAAAACGCCACGTGG--T |
| droGri2 | scaffold_15252:7270330-7270448 + | C-----------------------------------------------GGGCAGCGAATTACTTGGGCCAAGTGGATGTAAACTGTG---AAAGCGCATTTTGCATATAACAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCG-A-TATAACGCCACGTGG--G |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:15548779-15548889 - | AAT---------------ATTATGGAGCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCCGGTCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC-----------------------AC |
| droSim1 | chr2R:14254213-14254323 - | AAT---------------ATTCTGTGGCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC-----------------------AC |
| droSec1 | super_1:13063508-13063618 - | AAT---------------ATTCTGTGGCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC-----------------------AC |
| droYak2 | chr2R:13623899-13624012 + | CAG---------------ATACTGGGGCAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC--------------------ATTAC |
| droEre2 | scaffold_4845:9749030-9749140 - | AAG---------------ATACTGTAGCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATCAGCAGCACC-----------------------AA |
| droAna3 | scaffold_13266:9731502-9731641 + | AATAATAT----AC-----CAATATAAAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCGGCGCTTATTAACAAGAATTTCAAATGTGAC |
| dp4 | chr3:12677403-12677511 - | TA-----------------CCTTATTGTGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT-----------------------AC |
| droPer1 | super_2:8906155-8906263 + | TA-----------------CCTTATTGTGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT-----------------------AC |
| droWil1 | scaffold_180701:1651595-1651704 - | AAC---------------CAAATGGC-GGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTATCGCCAGT-----------------------TT |
| droVir3 | scaffold_12875:4112289-4112408 + | ATATA--T----ATCTATATCATATAGAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGGC-----------------------TA |
| droMoj3 | scaffold_6496:20936612-20936737 - | AAAGAAAACAAAATCTATATCGTATAGAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGCC-----------------------TA |
| droGri2 | scaffold_5621:2961-3084 + | ATCGA--------TCTATGTTTTATAGAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATACGCAGCGATTAT-----------------ATAGT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:18872718-18872857 - | ATGCACATTTATTTGGCATCATG------------------------------------------C---------------------------------------TTCTGCGATCTCTACCAATTTTCCTTGCACTCT------TTGTCCTTTCCAAAAGTGACACGGGT----GCAGGTGAAGATTCG---GAAGAGGACGACGAAAACGACT---GCAAC-CGGACGACTCTTGGT |
| droSim1 | chr2R:17459524-17459663 - | ATCCACATTTATTTGGCATCATG------------------------------------------C---------------------------------------TTCTGCGAGCTCTACCACTTCTCCTTGCACTCT------TTGTCCTTTCCAAAAGCGACACTGAT----GCAGGTGAAGATTCG---GAGGAGGACGACAGCGAAGACT---GCAAC-AGGACGACTCTTGGT |
| droSec1 | super_9:2164747-2164886 - | ATCCACATTTATTTGGCATCATG------------------------------------------C---------------------------------------TTCTGCGAGCTCTACCACTTCTCCTTGCACTCT------TTGTCCTTTCCAAAAGCGACACTGAT----GCAGGTGAAGATTCA---GAGGAGGACGACAGCGAAGACT---GCAAC-AGGACGACTCTTGGT |
| droYak2 | chr2R:18832811-18832950 - | AACCGCGTTTATTTGCCAAAATG------------------------------------------C---------------------------------------TGCTCCGAGCTCTACCACTTCTGCTCACACTCTGTGTGTTGGTCCTCTCCAACGACGACACGGAT----GCAGATGAAGAAGAG---GAAGAGGACGA------CGACT---GCAAC-AAGGCGACTCTTGGT |
| droEre2 | scaffold_4845:20234099-20234238 - | AACCACGTTTATTTGCCATAATG------------------------------------------C---------------------------------------TGCTCCGAACTCTGCTC------CTTACGCTCTTCGTGTTTGTCCTTGCCAAAAACGATACGATT----GCAGAAGTAGAGGAA---GAGTCGGACGAGGACGAAGGAT---GCAAC-AAGGCGACTCTTGGT |
| droAna3 | scaffold_13266:15204126-15204261 - | ATTTAAGA-GCTTTTCCCTTCAAAGCCT----------------------------------------------------------------------------------------------AAACAGTTGACACAAAATGTGGCTACCCTTCTTGCTAGTGGCACTGCC----TTGGGGGACTGTGGTGGG---GGGAGGTCCTCTGACATTGGCCAATCTTAGCCGAATCATTGGA |
| dp4 | chr3:14089101-14089284 - | AAGCA-ATTAGTTTGCCATTTGCCATCTTATCGGGGTAATACCCAATCCAATTTATTGACCAATTCGAGATAGTCCCAAAGCTTTTCGCTGATTGCAACGATCCATTCCAAAGAAATTTT----------------------------------------------AGTAACTCCCAGAACAACAAAATGAA---CAAAGCTCGATCCGCGTTC---GCCGC-CGCCCTTCTTTTGCT |
| droPer1 | super_4:1228949-1229132 + | AAGCA-ATTAGTTTGCCATTTGCCATCTTATCGGGGTAATACCCAATCCAATTTATTGACCAATTCAAGATAGTCCCAAAGCTTTTCGCTGATTGCAACGATCCATTCCAAAGAAATTTT----------------------------------------------AGTAGCTCCCAGAACAACAAAATGAA---CAAAGCTCGATCCGCGTTC---GCCGC-CGCCCTTCTTTTGCT |
| droWil1 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | scaffold_6496:24343095-24343103 - | AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGGC |
| droGri2 | scaffold_15112:3934700-3934745 - | ATATTCAATATGCT-------------------------------------------GAGCACATC---------------------------------------TTCTGAAAGCATTTCAGACTTTC-------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:9137677-9137812 + | CCAGACTCAGACGGACTTA----TCGCAA----CTTATCGAT------CGGGTGGCGGATATA----------GATCA-----------------TTGGTT---------------------------------------------------------------------------------------------------------------ATCCCTTAATTAAAGC--------AAACAAGATTTGTTTCGGCCGCCC--GATTTTACATACAACGAC-----------------ACGAATAGCAGG-----------------------------ATAT-AG |
| droSim1 | chr3L:8545595-8545743 + | CCTGACTCAGACGGACTTA----TCGCAG----CTTATCGAT------CGGGTGGCGGATATA----------GATCATAGCAAGCCCTATCGAATTGGTT---------------------------------------------------------------------------------------------------------------ATACCT--ATTAAAGC---------AACTAGGTTTGTTTCGGCCGCCC--GATTTTACATACAACGAC-----------------ACAA-TAGCAGG-----------------------------ATAT-AG |
| droSec1 | super_0:1396669-1396817 + | CCTGACTCAGACGGACTTA----TCGCAG----CTTATCGAT------CGGGTGGCGGATATA----------GATCATAGCAACCCCTATCGAATCGGTT---------------------------------------------------------------------------------------------------------------ATACCT--ATTAATGC---------AACTAGGTTTGTTTCGGCCGCCC--GATTTAACATACAACGAC-----------------ACAA-TAGCAGG-----------------------------ATAT-AG |
| droYak2 | chr3L:2783249-2783373 - | CCAGACTCAGACGGACTA-------GCAA----CTTCGCGAT------CGGGTGGCGGCTGTA----------GATT-------------------------------------------------------------------------------------------------------------GT-----------------CCTTGT---------ATCAAAGG--------AAAAGAGATTTCTTTTGGCCACCC--GATTCAAAATACAACGAC-----------------ACAA-TAGCAGG-----------------------------ATAT-AG |
| droEre2 | scaffold_4784:4908876-4909031 - | CCTGACTCAGACGGACTA-------GCAA----CTTATCGAT------CGGGTGGCGGATATACCCGTGCACAGATTGTAGCACACCCTATCGAATTGGAA---------------------------------------------------------------------------------------------------------------TTCCCC--ATTAAAAC--------TGAGTGGGCTTATATCGGCCGCCC--GATT-CACATACAACGAC-----------------ACAA-TAGCAGG-----------------------------ATAT-AG |
| droAna3 | scaffold_13337:19535893-19536018 + | CACTGCGATCTCGAGTACT----TT-GATCTCTCTTCTCAGGGCCCC-AAAAAGTATGCTAT-------------------------------------------------------------------------------------------------------------GA-------AAT-ATTTCGTTTGC--------------------------TAAAGTG--------TTTCAAGGATTCTTTTGCGAGCCC--ACCT------------CA-----------------AGGA-TGTCAAA-----------------------------CTCT-AG |
| dp4 | chrXR_group5:393309-393508 - | C-AGACTTAGACGGACTTCAATCTAGCAG----TTTAACGAT------CGGGAAACGGGAATA----------AACCAAAGT---------------------------------------------------CGGCAGCCTATCCATCAAAATTCCAATATAATCACAACAGAAA-----TC-CAATTTGTTGC----------------------------------------------TGGTTTATTTACGTTTCTC--GAGC-CACATACAACGAC-----------------ACAA-CAGCAGGTCTTCAGATAACTCATATGAAATATACTTATGC-GG |
| droPer1 | super_9:3484001-3484112 - | GCATACATAGGCATCGCA----------T----CC---------------------------------------------------------------------------------------------------------------ATCGGGGTCAC---------CCGGTGGAGGATAAA-TTTTGC-----------------GGTGGTAACCCCGCAACACAAGC--------A--------------------------CTCACACACACAGCGAC-----------------CCAA-ACACGTG-----------------------------CAATAAC |
| droWil1 | scaffold_181096:6035694-6035827 - | TCAGGCCTAAAATTAGTTG----CCATAA----CT-CTCATT------TATATAGTAGATTTG----------ATGCTTTTT-----------------------------------------------TGTT----------------------------------------------------------TTTT---------------------------TAATAT---------ATTAAAATTTTTATTA-------------ATGCATTTCA--GTGTAAAAATTAAAATGACACATTTTTCCTT-----------------------------ACGT-AA |
| droVir3 | scaffold_13246:101577-101715 - | CAGG---CAGACGAAAGTA----TCTC-----------CGAC--CC--CATGAAGTGTATATA------------TTC-----------------TTGATCAGCATCAATAGCTGAGTCGATGTAGCCATGTCCGTCTGCC----------------------------------------------------------------------------------------------------------TGTCCGTCCGTCC--GTCCGTATGTATGA--ACGCA--------------AGGA-TCTCAGA-----------------------------ACCT-TT |
| droMoj3 | scaffold_6540:2381798-2381917 - | GTAGATTCAGTTGTACTTT----ATAGAA----TT--TCGAT-----TTA---------------------------------------------------------------------------------------------------------------------TGTTAA-------AAT-TCATCCCTTAC---------------------------CAATAT---------ATATGTGTT-TTTTCAAATGCATGCATTT-TAATGGTATCAAC-----------------ACAATTTGAAAG-----------------------------TCTC-AT |
| droGri2 | scaffold_15074:3698733-3698860 + | CTGAACATAACTGAATAAA----TT--------------------------------------------------------------------------------------------------------------------------------------------CACAACAT-------ATT-TAGTCAGTTACTTATGTATATACT----------TGATACAATTGTGCAAACATGCAAAATTCCAATTAAATGTCA--CAATATATAAAAACTG----------------------A-TGCGAGA-----------------------------AGAT-TG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:16024273-16024406 + | CACGCTCACCAATCCCATGACCGGCGAGGAGATGCGATTCCTCGAGCTGCTCACCGCCTTTGGCTTGGACATCGAGGCGGTGGCCGCCGCTCTGGGAGTCGATATGCACACGCTCAACAACATGGAGCGCACCG |
| droSim1 | chr3L:15362441-15362574 + | CACGCTCACCAATCCCATGACCGGCGAGGAGATGCGCTTCCTCGAGCTGCTCACCGCCTTTGGCTTGGACATCGAGGCGGTGGCCGCCGCTCTGGGAGTCGATATGCACACGCTCAACAACATGGAGCGCACCG |
| droSec1 | super_0:8124906-8125039 + | CACGCTCACCAATCCCATGACCGGCGAGGAGATGCGCTTCCTCGAGCTGCTCACCGCCTTTGGCTTGGACATCGAGGCGGTGGCCGCCGCTCTGGGAGTCGATATGCACACGCTCAACAATATGGAGCGCACCG |
| droYak2 | chr3L_random:1624866-1624999 - | CACGCTCACGAATCCCATGACCGGCGAGGAGATGCGCTTCCTGGAGCTGCTCACCGCCTTCGGCTTGGACATCGAGGCGGTGGCCGCCGCTCTGGGCGTCGACATGCACACGCTCAACAACATGGAGCGCACCG |
| droEre2 | scaffold_4784:18269422-18269555 + | CACGCTCACGAATCCCATGACCGGCGAGGAGATGCGCTTCCTGGAGCTGCTCACCGCCTTCGGCTTGGACATCGAGGCGGTGGCCGCTGCACTGGGCGTCGACATGCACACGCTCAACAACATGGAGCGCACCG |
| droAna3 | scaffold_13337:16593401-16593534 - | CACCCTCACGAACCCCCTGACCGGCGAGGAGATGCGCTTTCTGGAGCTGCTCACGTCCTTCGGCATGGACATCGAGACAGTGGCCACCGCCCTGGGCGTGGATATGCACACGCTGAACAACATGGAGCGGACGG |
| dp4 | chrXR_group8:4268508-4268641 + | CACACTGACCAATCCGCTGACCGGCGAGGAGATGCGCTTCCTGGAGCTGCTCACCTCGTTCGGACTGGACATCGAGGCGGTGGCGGCGGCCCTGGGCGTCGACATGCACACCCTCAACAACATGGAGCGGACGG |
| droPer1 | super_29:501948-502081 + | CACACTGACCAATCCGCTGACCGGCGAGGAGATGCGCTTCCTGGAGCTGCTCACCTCGTTCGGGCTGGACATCGAGGCGGTGGCGGCGGCCCTGGGCGTCGACATGCACACCCTCAACAACATGGAGCGGACGG |
| droWil1 | scaffold_181024:787133-787266 + | CACATTAACCAATCCACTGACAGGTGAAGAGATGCGTTTCCTTGAGCTGCTCACCTCCTTCGGTTTGGATATTGAGGCAGTGGCAGCGGCGCTTGGCGTCGATATGCATACCCTCAACAATATGGAACGTACCG |
| droVir3 | scaffold_13049:9209848-9209981 + | CACGCTAACAAATCCGCTGACCGGCGAGGAGATGCGCTTTCTCGAGCTGCTCACCTCCTTCGGCCTGGACATCGAGGCCGTCGCCGCCGCACTCGGCGTCGATATGCACACCCTGAACAACATGGAACGCACCG |
| droMoj3 | scaffold_6680:6136665-6136798 - | CACGCTCACGAATCCGCTGACCGGCGAGGAGATGCGCTTCCTCGAACTGCTCACCTCCTTCGGTCTGGACATCGAAGCCGTGGCCGCAGCACTCGGCGTCGATATGCACACGCTGAACAACATGGAACGAACGG |
| droGri2 | scaffold_15110:4981116-4981249 + | CACGCTCACGAATCCGCTAACCGGCGAGGAGATGCGCTTCCTCGAGCTGCTCACCTCATTCGGCTTGGACATTGAGGCGGTGGCAGCAGCGCTGGGTGTCGATATGCACACCCTGAATAACATGGAGCGAACGG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:23332312-23332452 + | TATGACATCTGCCTGTT-----------ATGAA-------TACATATATT-TTTATGTTTG--AG-TCAACATC--GA------------------------------------------GTTGCCGATGTTTGG---AAAACATCGATGACATCGCT----------GTTGGCATCGA----AATATGTCCATATCTAATATATAGTTCCATTCTGTTTTATT |
| droSim1 | chr3L:22456065-22456207 + | AATGACAGCTGCCTGTT-----------ATAAG-------TAATTGTATT-TTTATGTTTG--AGCTAAACATC--GA-----------------------------------------TTATGCCGATGTTTGG---AAAACATCGATGACATCGCT----------GTTGCCATCAA----AGTATGTCCATATCTAATATATAGTTCCATTCTGTTATATT |
| droSec1 | super_41:217199-217341 + | AATGACATCTGCCTGTT-----------GTAAG-------TAATTGTATT-TTTATGTTTG--AGCTAAACATC--GA-----------------------------------------TTATGCCGATGTTTGG---AAAACATCGATGACATCGCT----------GTTGCCATCAA----AGTATGTCCATATCTAATATATAGTTCCATTCTGTTATATT |
| droYak2 | chr3L:23917805-23917956 + | TATGATATCTGAATATTTAGTTTTTCTTTTGC---------ATATTTATT-TTTAATATTG--AGCTTCACATA--TA-----------------------------------------TATTGCCGATGTTTAC---AAAACATCGATGACATTGTT----------TTTGGCATCGT----CATATGCCCATCACTAATATATAGTCCCCTTCTGTTTCATT |
| droEre2 | scaffold_4784:22817455-22817604 - | GGC---ATCTGTATAGG-----------ATGAA-------TAAATTAATT-TTTAAGTTTG--ACCACAACTTT--CA-----------------------------------------TTTTGCCGATGTTTAG---AAAACATCGATGACACCGCA-----TCATCGTTGTCATCGACTTACATATGTACATCTCTAATATATAGTATCATTCTGTTTTATT |
| droAna3 | scaffold_12916:14167403-14167537 + | TGCT---------CGTT-----------AGAGA-------TGAT-AAACA-TCGATGTTGGCTTGCCAAACATC--GA-----------------------------------------TGTCAACGATGTTTTC---AAAACATCGATGACATCGAT----------GTTAACATCGA----TGTTTCTCCACCTCTGACCACTGGAGTGAATTATTTTTAGT |
| dp4 | chrXL_group1e:10317112-10317245 + | TCAAACATATTATTTTT--------ATTGTAAATATCCTA----------------GTTAT--GGTGTAAATCT--GA-----------------------------------------AAATATCGATGTTTGAGAAAAAACATCGATGACATCCAT----------GTTAACATCGA----TGTTTGTCCAGCTTTAGCTTGCATCCCTAGCTTG------- |
| droPer1 | super_69:203478-203603 - | CATATT-----ATTATT-----------GTAAATATCCTA----------------TTTAT--AGTGTAAATCT--GA-----------------------------------------AAATATCGATGTTTGAGAAAAAACATCGATGACATCCAT----------GTTAACATCGA----TGTTTGTCCAGCTTTAGCTTGCATCCCTAGCTTG------- |
| droWil1 | scaffold_181155:90645-90784 - | TATTGTTTCCGCCTCTT-----------CTGAT-------CAATCTATTT-CTAATTTATT--TGCT-AACTT---CTTCTCGACTACGTACATATCTACTACGTACAACTCTAGTCAGATATATCCATATCCTATAACG-----------------------------------------------------------AAATCCAACTGCATTCTTAATCGTG |
| droVir3 | scaffold_13036:829247-829384 - | TTTATCGTTTATATTTGAAATT------ATTAA-------TTAAATTATT-ATTATTTTTA--AGTAATACAAA-----------------------------------------------------------------ATAAATTAAGGAAATAAAAGTGCAAATTTGTTGTTTTCAA----AG-ATACATTTAATTAATTTTTATTTTTTTTTTATTTTATT |
| droMoj3 | scaffold_6500:19787300-19787437 - | TATTATG---AGCTGAA-----------ATAAA-------TATAAAAATA-TTTA--ATTA--AATTCAACAAAATGATGTC------------------------------------------TAGATATTAAA---AAAAAAAAAAAAAATAAAAT----------ATATATATATA----TATATATATATATAT-ATATATATATATATTTTTTTTTTTT |
| droGri2 | scaffold_14853:4224791-4224937 - | TATATC-TATGCGTCTGTAGATACT----TGCA-------TAAGTGTATCATCTATGTACG--GTTTACATATA--GT-----------------------------------------GT---ATGGTTTATAA---AAAATATTTCTCAATACGCC----------GTTAGTACAAA----AAAAAAGTAGTGTATAAAAAATGCTTGCACTTTGTTTTAGT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:16528359-16528506 - | ATTTTAAACAACTA-TTTCGG-------ATCGTTTG---------------AATGACCAATTTTGT-------------CTTTTATTTTCTCT--G--------------T-G-----TTTT-----CAGTTAATG-AAAGAT-AG-TGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCC---------AAGAAGACGATGTTGATTG |
| droSim1 | chr2L_random:601476-601603 - | ATTT------------------------ATTT-TTG---------------AATGACCAATTTTGT-------------CTT---TCTTCTCT--G--------------T-C-----GTTT-----CAGTTAATG-AAAAGT-AG-TAAACACAGTGCTAAATGAAAGAGAATGAGACCCAGTCGACAGGACCC---------AAGAAGACGATGTTGATTG |
| droSec1 | super_7:174891-175018 - | ATTT------------------------ATTT-TTG---------------AATGACCAATTTTGT-------------CTT---TCTTCTCT--T--------------T-C-----TTTT-----CAGTTAATG-AAAAGT-AG-TAAACACAGTGCTAAATGAAAGAGAATGAGACCCAGTCGACAGGACCC---------AAGAAGACGATGTTGATTG |
| droYak2 | chr2R:4574442-4574584 + | ATTTTATAAAACTA-TGGGGG-------ATAC-TTA---------------GATAATTAATTTTGT-------------CAT---TGTTCTTT--G--------------T-C------TTT-----CAGTTAATG-AAAAGT-AG-TAAACACAGTGCTAAATGAAAGAGAATGAGACGCAGTCGACAGGACCC---------AAGAAGACGATGTTGATTG |
| droEre2 | scaffold_4845:19592406-19592554 - | ATTTTATGCAACTA-TTGTGT-----GTATCT-TTA---------------AATGACTAATTTTGT-------------CAT---TCTTCTCT--G------TTT-----T-T-----TTTT-----CAGTTAATG-AATAGT-AG-CAAACACAGTGCTAAATGAAAGAGAATGAGACGCAGTCGACAGGACCC---------AAGAAGACGATGTTGATTG |
| droAna3 | scaffold_12916:16031637-16031788 + | ATGTT------------------------TAA-ATG---------------ATTAAAAAATTATGTTCAACTAATTATTAA-------TTTAT--A------TTTT-ATTGTCTTCCCATTA-----CAGTTAATGAAAAAGT-AATTTAAAAAATCGCTAAATGAAAGAGAATGAGACCCAGTCGACATTTCCC---------AAGAAGACCATGTTGATTG |
| dp4 | chr4_group3:8251613-8251715 - | TT-----------------------------------------------------------------------------------TGTTCCTTTTC--------------T-C-----TTTA-----CAGTTATTTGCCAAGC-AG--AAGAAAAGTGCTAAATGAAAGAGAATGAGACACAGTCGACAGACGAA---------CAGAAGACGATGTTGATTG |
| droPer1 | super_1:9700572-9700674 - | TT-----------------------------------------------------------------------------------TGTTCCTTTTC--------------T-C-----TTCA-----CAGTTATTTGCCAAGC-AG--AAGAAAAGTGCTAAATGAAAGAGAATGAGACACAGTCGACAGACGAA---------CAGAAGACGATGTTGATTG |
| droWil1 | scaffold_180772:4810613-4810759 - | AAGTTTACCAATTAATAGCAA-------ATTG-TTGGTATTTCCATTTTAAAATTGCTAACATTTA---------CCTTAA-------TTTCT--C------TTCT-TTTC-T-----TTTT-----CAAT---------TCC-AG-CTTACGTTGCTATAAATGAGAAAGGATCAA------------GATCAA---------ACGAAAAGGATGTTGATTG |
| droVir3 | scaffold_13052:1601321-1601473 - | ATATTGCGCAACCA-TTCTGGTCCGAATTTCA-TTG---------------AGTCAGTCATTTTGG----GTAACTCTT------------GA--GTTTATTTCTTAATTGTC------TTTCGCTGAAATTGTGCAATAAAT-AA-CA---ATTT---------------TACCATCAGCATTAGCCAGCACAC---------ACACGCACGCTATCGGTTT |
| droMoj3 | scaffold_6500:21042727-21042874 - | AATTA------------------------TAA-TTG---------------AACACTTGA-TGCGATTGCCAAATTTTTGAT---TTTTGGTTCTA--------------T-T-----TTTA-----GAGTTACAG-CTAAAT-GA-AA---ACTATACCAATTATAAAATCAAAAGGGCTACACAAGAACATTTATGATTTCAAAGAAAAGTGTTTCATTTG |
| droGri2 | scaffold_14822:853797-853916 - | GCATG-----------------------------------------------ATGACTTGTGGTCT-------------CTA---TTCTATAT--G--------------C-T-----GGTT-----GAGTTTGTG-AATGGTCAG-TTGCCGTGGCGAAAGATAAAAGACAAG--GAACAGGTTGGATTGACCA---------AAGAGAAATATGATCATAG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:6338711-6338870 - | AGA-TG-CCCAGACAGCAAAAGT----------------------------------------------------------------------------------------------------------------------------------AACTT-TCGTAATCGAAAAAGTTTCGCTTTTTTTTCTGCTT--CT--GCCGCTGAGCAAGTTTTAAATATTACCGCTTAGTT-------ACAGCTGCAGG------------------------------AAG-AAAAGTTATAATTATGGACTACGTACATAAATATCTTGGCAAGTGT----------------------TT |
| droSim1 | chr3R:15041591-15041748 + | AGA-TG-CCCAGACAGCAAAAGT----------------------------------------------------------------------------------------------------------------------------------AACTT-TCGTAATCGAAAAAGTTTCGCTTTTTT--CTGCTC--CT--GCCGCCTAGCAAGTTTTAAATATTAACGCTTAGTT-------ACAGCTGCAGG------------------------------AAG-AAAAGTTATAATTATGGGCTAAGTACATAAATAACTTGGCAAGTGT----------------------TT |
| droSec1 | super_0:15602732-15602889 + | AGA-TA-CCCAGACAGCAAAAGC----------------------------------------------------------------------------------------------------------------------------------AACTT-TCGTAATCGAAAAAGTTTCGCTTTTTT-TCTGCTC--CT--GCCGCCGAGCAAGTTTTAAATATTAACGCTTAGTT-------ACAGCTGCAGG------------------------------AAG--AAAGTTATAATTATGGGCTAAGTACATAAATAACTTGGCAAGTGT----------------------TT |
| droYak2 | chr3R:10367066-10367225 - | AGA-TG-CCCAGACAGCAAAAGT----------------------------------------------------------------------------------------------------------------------------------AACTT-TCGTAATCGAAAAAGTTTCGCTTTTTTCGCTGCTC--CT--GCCGCCGAGCAAGTTTTAAATATTAACGCTTAGTT-------ACAGCTGCAGG------------------------------AAG-AAAAGTTATAATTATGGGCTAAGTACATAAATAACTTGGCAAGTGT----------------------TT |
| droEre2 | scaffold_4770:15270440-15270598 + | AGA-TG-CCCAGACAGCAAAAGT----------------------------------------------------------------------------------------------------------------------------------AACTT-TCGTAATCGAAAAAGTTTCGCTTTTTT-GCTGCTT--CT--GCCGCCGAGCAAGTTTTAAATATTAACGCTTAGTT-------ACAGCTGCAGG------------------------------AAG-AAAAGTTATAATTATGGGCTAAGTACATAAATAACTTGGCAAGTGT----------------------TT |
| droAna3 | scaffold_13340:761260-761417 + | AGA-TGGCCCAGACAGCAAAAGT----------------------------------------------------------------------------------------------------------------------------------AACTT-TGGTAATCGAAAAAGTTTCGCTTTCGT------TTTTTTCCATC-CCGAACAAGTTTTAAATATTAACGCTTAGTT-------ACAGCTTCGGA------------------------------GAG-GAAAGTTATAATTATGGCCTAAGTACATAAATAACTCGCCAAATGT----------------------TT |
| dp4 | chr2:7128424-7128589 + | AGA-TG-G-CAGACGGCCCAAGG----------------------------------------------------------------------------------------------------------------------------------AACTT-TGGTAATCGAAAAAGTTTCGCTTTTTTCGC---TTTTTT--CTCAGTGGCCAAGTTTTAAATATTAACGCTTAGTTACTCCGTACAGCTGCAGA------------------------------AAGAAAAAGTTATAATTATGGCCTAAGTACATAAATAACTCGGCAAATGT----------------------AC |
| droPer1 | super_0:982713-982880 + | AGA-TG-G-CAGACGGCCCAAGG----------------------------------------------------------------------------------------------------------------------------------AACTT-TGGTAATCGAAAAAGTTTCGCTTTTTT-TTTGCTTTTTT--CTCAGTGGCCAAGTTTTAAATATTAACGCTTAGTTACTCCGTACAGCTGCAGA------------------------------AATAAAAAGTTATAATTATGGCCTAAGTACATAAATAACTCGGCAAATGT----------------------AC |
| droWil1 | scaffold_181108:125373-125548 - | AGA-TG-GG------GCAAAAGTATGTCGACTGAGGAAAACC-GGA--------------------------------------------------------------GAG----------------------CA------------------AACTTGTAGTAATCGAAAAAGTTTCGGTTTGTT------------------GTAGCCAAGTTTTAAATATTAACGCTTAGTT-------ACAGCTGCAGAA--G---------------------------AGAAAAAGTTATAATTATGCCGTAAGTACATAAATAACACGGCAAATGTGAC--------TT---T-----TT |
| droVir3 | scaffold_13047:1304900-1305088 - | AGAA----TAAGAAAGAA-----ATG-----TTAGGACGGCT-GGA--------------------------------------------------------------CAG----------------------GATTCAGTTTTGTTGCTGCTTACTG-CGGTAATCGAAAAAGTTTTGTT-----------------------GTAGCCAAGTTTTAAATATTAACGCTTACTT-------ACAGCTGCAGAGCTG--------------------------GAA-AAAAGTTATAATTATGGCGTAAGTACATAAATAACGCTGCAAATGTGCC------GCTTTTCT-----TT |
| droMoj3 | scaffold_6540:5375448-5375637 - | GGAATA-ATAAGAAAGAA-----ATG--------------CT-GGA--------------------------------------------------------------GAGGCACAGGCACAGTCTGGCTTGAGATTCAGTT----TGCTGCTTACGG-CGGTAATCGAAAAAGTTTT----------CTGTT-----------GTAGCCAAGTTTTAAATATTAACGCTTACTT-------ACAGCTGCAGAGCTG--------------------------GAA-AAAAGTTATAATTGTGGCGTAAGTACATAAATAACGCTGCAAATGC------------------------ |
| droGri2 | scaffold_14906:4949937-4950239 + | AGAA----TAAGAAAGAA-----ATG-----TAAGCAACGCTCGGACAGATACAGATACAGAGACAGAGCCAGAGACAGAGCCAGAGACGGACACCGAAACTGAAACTGAGGCACA-GCACAG---GACTTGAGATACAGTTTTGTTGCTG----CTG-CGGTAATCGAAAAAGTTTGGTT-----------------------GTAGCCAAGTTTTAAATATTAACGCTTACTT-------ACAGCTGCAGAGCAGAGCTAAGCAGAAAAAAAAAATAAATAAAA-GAAAGTTATAATTATGGCGTAAGTACATAAATAACGCTGCAAATGTGCCAGAGTGGGGTTGGTAGGAGTT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:7267898-7268043 - | TTGGTGATGGTGATGGTGATGGTGCTGGTGGTGGTGCC------TTCATTG-------------------------TTTT---------TCTCTTCTT--TTTGTTGTTTGACTTTTACACTTTTG---------------AAC--------------------------------------AA------CAAGCCGAAAGGAA----------------------------------------------AAAG--CAT---GAA-GGAATGCAAAGTATTCGATAAAAAAT-TATGAAA |
| droSim1 | chr3R:14102257-14102390 + | TTGGTGATGG------------TGCTGGTGGTGGTGCC------TTCATTG-------------------------TTTC---------CCTCTTCTT--TTTGTTGTTTGACTTTTACACTTTTG---------------AAC--------------------------------------AA------CAAGCCGAAAGGAA----------------------------------------------AAAG--CAT---GAA-GGAATGCAAAGTATTCGATAAAAAAT-TATGAAA |
| droSec1 | super_0:14695532-14695664 + | TTGGTGATGG------------TGCTGGTGGTGGTGCC------TTCATTG-------------------------TTTC---------CCTCTTCTT--TTTGTTGTTTGACTTTTACACTTGTG---------------AAA--------------------------------------AA------CAAGCCGAAAGGAA----------------------------------------------AAAG--CAT---GAA-GGAATGCA-AGTATTCGATAAAAAAT-TATGAAA |
| droYak2 | chr3R:11301709-11301828 - | TTGGTGG---------------------------TGCC------TTCATTG-------------------------TTTT---------CCTCTTCTT--TTTGTTGTTTGACTTTTACACTTTTG---------------AAC--------------------------------------AA------CAGGCCGAAAGGAA-------------------------A--------------------AAAG--CAT---GAA-GGAATGCAAAGCATTCGATAAAAAAT-TATGAAA |
| droEre2 | scaffold_4770:14352366-14352483 + | TTGGTGG---------------------------TGCC------TTCATTG-------------------------TTTT---------CCTCATCTT--TTTGTTGTTTGACTTTTACACTTTTG---------------AAC--------------------------------------AA------CAAGCCGAAAGGA-----------------------------------------------AAAG--CAT---GAA-GGAATGCAAAGCATTTGATAAAAAAT-TATGAAA |
| droAna3 | scaffold_13340:13702429-13702549 - | TCGGCAG---------------------------TGCC------CCCATTG-------------------------TTTT---------CTTCTCATTT-TTTCTTGTTTGACTTTTACACTTTTTT--------------AAC--------------------------------------AA------CAA--CAAAAGCAA----------------------------------------------AGAGACAAT---GGACGGAATGCAAAGTATTCGATATAAAAC-CG-AAAA |
| dp4 | chr3:2000510-2000593 + | CTGGTGGTGGTGGTGGTGGTGGTCTTGGTGCTGCTGCT------------------------GCAATTCAATTTCGTTTC---------GCTTTTGTTTCTTTTTTGTTTGCCTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droPer1 | super_6:893248-893436 - | TTGGCGGCGACGGCG-------------------TCTC------TTCTCTGTCTCTCTCCCTCCCGTTCTCGTTCGCTCCCACAGGACGG------CC--TCTGTTGTTTGACTTTTGCACTTCTTT---------TTTTAAACAGGGAGTGGGAGTGGGAGTGTGAGCGAGACAAACAGACAGCA---GC-----------------------------------------------------------AAAA--CAT---AAA--GAATGCAAAGTATTCGATAAAACACACACAAAA |
| droWil1 | scaffold_181089:4216454-4216565 + | TTGGCAGCAGC--------------------------A------GCCATTG-------------------------TCTT---------AAG---------CAGTTGTTTGACTTTTACACTTCTCC--------------CGC--------------------------------------AGCAACAACAAAGCATAAAAAG----------------------------------------------A-------------A-AACATGCAAAGTATTGGAAAAACACT-GAAAAAT |
| droVir3 | scaffold_12855:9719552-9719632 - | TTGGTTCGCG------------------------CGCGCGCACGGCCATTG-------------------------TCTT---------AAG---------CAGTTGTTTGACTTTTGCACTTTTTT--------------AAC--------------------------------------AACA---ACAAAGAA-----------------------------------------------------A------------------------------------------AGTCA-- |
| droMoj3 | scaffold_6540:24748319-24748394 - | TTCGCGCAGG----------------------------------GCCATTG-------------------------TCTT---------A------CG--ACAGTTGTTTGACTTTTGCACTTTTTT--------------AAG------------------------------A-------AA------C------------------------------------------------------------------------------------------AAACAAAAAAC-AATGAGC |
| droGri2 | scaffold_14830:2094020-2094205 - | TTTGGCG-----------------------------CC----C-AGTATTG-------------------------TTTT---------AAG---------CAGTTGTTTGACTCTTGCACTTTTTTCTTCTTTTTTTTT-AAT------------------------------AAGCAAACAACA---ACAAAGCCAAGTCAGCAACCTGTACACAGTCTGAAGGGGGAAGGGCTGGAGTTTGCTTGAAAAAG--TATCTGCAA-AGAATGCAAAGTATTGTATACAAAGTGTGTAGAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:18867030-18867176 - | TAAAAATAAAA----AAATG-------------CTC-----------------GATTGCTGCAA-----------------------------------------CTAAGAAACA--AATATTTTCAGTTGTTCAT----TGCAAATTAATTTA---TGTACATTGCTAT---------------GAAATCAATTGAAAATATAAT---TGTA--------------------TCCTAGGCTTATCAGCT-GCAATGCCTCTATGAAGGG |
| droSim1 | chr2L:18557325-18557471 - | TAAAAATAACA----AAACG-------------CTC-----------------ATTTGCTGCAA-----------------------------------------ATAAGAAACA--AATATTTTCAGTTGTTCAT----TGCAAGTTAATTTA---TGTACATTGCTAT---------------GAAATCAATTGAAAATATAAT---TGTA--------------------TCCCAGGCTTATCAGCT-GCAATCCCCCCAAGAAGGG |
| droSec1 | super_7:2494148-2494294 - | TAAAAATAACA----AAACG-------------TTC-----------------ATTTGCTGATA-----------------------------------------ATAAGAAACA--AATATCTTAAGATGTTCAT----TGCAAATTAATTTA---TGTACATTGCTAT---------------GAAATCAATTGAAAATATAAT---TGTA--------------------TCCTAGGCTTATCAGCT-GCAATCCCCCCAAGAAGGG |
| droYak2 | chr2R:5382904-5383074 - | TAAAAATAACA----AAGCA-------------TAT-------------TAGCATATGCTGCAA-----------------------------------------ACAATAAATA--AATATTTTCAGCTGTGCAT----TGCAAATTAATGTA---TTTACATAGCTAT---------------GAAAGCAATTGAAACGACAAT---TGCAGGTCATTTTTATTGCACACATCCTAGGCTTATCAGTG-GCAATGCCCCTACGAAGAG |
| droEre2 | scaffold_4845:5409251-5409398 + | TACAAGTAACA----AAGTG-------------CTA-----------------ATTCGCTGCAA-----------------------------------------ATAGGAAATA--AATATTTTCAT------------------------TATTAT-CACATTGCCA----------------GAAACCAATTGAAAAGATAAT---TGTAGGCCACTTTTGTTGCACGCATCCTAGGCTTATCAGCT-GATATGCCCCCACGAAGGG |
| droAna3 | scaffold_13334:1096999-1097137 - | TAAATATTTTT----AAGTA-------------ATT-----------------AATTG-----------GGCTACTG----------------------------GCTTTAAAAAATAATATTTTCAAATGTTATT----GGTAATTTAATTTT---TTTATAATTTT-TAAA------------TACATTTTTTTAAACTAAAATCCTTGTT--------------------TTCT----------------GCTTCCTTT--TCAGCT |
| dp4 | chrXR_group6:8932576-8932713 + | TTAAAATAAAA----ACATT--------------TC-----------------ATATTTAAATT-ACAAGGTTTTAT----------------------------ATTTTAAATA--AATAT------------ATTTCCCACAAATTAAAGAT---AATATATTTATTT---------------TAAAGTAATTTATAATTAAAT---TGAA--------------------TATGGGCCCTA----C---------TACAAAGACTTT |
| droPer1 | super_1:5889084-5889218 + | GATAGGTT---------------------------T-----------------TTGCAACACAA-----------------------------------------AAAATAAACA--AAGATTAGTTTCCAGTTAT----TAAATATTAATATA---TATATTTGAAGCA---------------GAAATATGTATATTTTAGAAT---CGTT--------------------TCTGTGGGGTTTTCATT-GCAATACCTTT--TATGAA |
| droWil1 | scaffold_180698:8557325-8557469 - | ACCAAAGAGAA----ATATCTCAAACTCAAACTCACAAACAAGACACATCAGCGC--------------------------------GCAAGAGCAACAACGCAAAGAACAAT--------------------------------------------TAAACAATTCTAT---------------TAAATTGATCGAAAATATAAA---CATT--------------------TCA-CAGCATAACAACA-ACAAA-----AGAAAAGGA |
| droVir3 | scaffold_12855:7203873-7204022 + | TGAAAATGAAT----AAATA-------------TAT-------------------ATGCTCCAATTAAAATTGAAACTACTATCCGAT--------------------------------------CGAAGGTCTT-TG-TTCAAATTCATTTG---A--GGGGTTTTTC---------------GCACTTTTTGGAAAATCCATC---ACTC--------------------CCCGATGGAAATGGGCT-TCAATGACTTAGTGGGTGG |
| droMoj3 | scaffold_6500:29247639-29247782 - | GGCCAATTAAC----AAACG-------------CAC-------------------GTGCAGCAG-----------------------------------------CTACAACAGC--ATCGTGTGCACACATACAT----TCAAACT-TCTTCT---GGAACATTCTTTTAATCACATCAGCTGTTAGTTTGGTTTAGTTTTGGTA---GATG--------------------G---------CGCTGCA-G------CACTGAATCTAT |
| droGri2 | scaffold_14853:9426729-9426870 + | TCCACAAAGATATCAAAATC--------------TC-----------------AGATACTGCTT-GAAAGTTGACAT---------------------------------------------TT-----CCCTCAT----AGAATA-TCCTTTA---TGTACAGTAATAT---------------GAGT--GTTTGTATTTGAAGTCT-TCTT--------------------TTTCATCGTCATTTATCTCCATCCTCTCTTTGACTGC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:24834459-24834589 - | TAAAGTAATAATATGAAAGCGACCCACCCAT--TC------------------------------------------------CCCTTCCGCCCATATTTATCCTT------------------------CGTCTACTGTTTCATCG----CAGGATTTAAGTGGGCGGAGCACGGAAT-----------TCGGGGGCGTGGCGC-----A--CTGGGTAGCGGGTA |
| droSim1 | chr3R:24520998-24521128 - | TAAAGTAATAATATGAAAGCGACCCACCCAT--TC------------------------------------------------GCCGCCCGCCCACTTTTATCCTT------------------------CGTCTACTGTTTCATCG----CAGGATTTAAGGGGGCGGAGCACGGAAT-----------TCGGGGGCGTGGCGC-----A--CTGGGTAGCGGGTA |
| droSec1 | super_4:3696490-3696620 - | TAAAGTAATAATATGAAAGCGACCCACCCAT--TC------------------------------------------------GCCGCCCGCCCACTTTTATCCTT------------------------CGTCTACTGTTTCATCG----CAGGATTTAAGGGGGCGGAGCACGGAAT-----------TCGGGGGCGTGGCGC-----A--CTGGGTAGCGGGTA |
| droYak2 | chr3R:21664594-21664723 + | TAAAGTAATAATATGAAAGCGACCGGCCCAC--C-------------------------------------------------CCTCGCCGCCCACTTTTATCCTT------------------------CGTCTACTGTTTCATCG----CAGGATTTAAGTGGGCGGAGCACGGAAT-----------TCGGGGGCGTGGCAC-----A--GTGGGTAGTGGGTA |
| droEre2 | scaffold_4820:3199292-3199428 + | TAAAGTAATAATATGAAAGCGACCGGCCCAC--C-------------------------------------------------CCTTTCCGCCCACTTTTATCCTT------------------------CGTCTACTGTTTCATCG----CAGGATTTAAGGGGGCGTAGCACGGAAT-----------TCGGGGGCGTGGCACAGTGGCTAGTGGATAGTGGGTA |
| droAna3 | scaffold_13340:19733656-19733776 + | TAAAGTAATAATATAAAAGCGACCAGCCCCT--AC---------------TTCTACTCCACCCAACCA-------------------GCCTCCCGATCCTGGGCAG------------------------CGTTGGTTGTTTCAGAG----G--------------CGGCTTGAGGAAC-----------TCGGGGGCGTGCCGC-----T------------CCTA |
| dp4 | chr3:722533-722667 - | TAAAGAGATAATGACAAAGCAACCCATTAAAAGCCATCCCTTGACAACACTCCTCTCTCATCCC-------------------------------------------------------------------CTTCATATTCCCATCT----CCGAA---AAATGAGCGAAGAACGGAGA-----------GCAACGTTTTAATAA-----A--TTTGTAAACAGATT |
| droPer1 | super_26:1114277-1114391 - | GACGGTGGCCTTCC-------ACTTCCTCTT--CC------------------GCCGCCACCACACCCCCTTCCCACTGCCAA---------GC------A---CG------------------------CTCTTTTTATCGCAATT----G-------TTGTCGG-------CGGA------------------TTTTCGGCTT-----A--CATGCGAGGAGCTA |
| droWil1 | scaffold_181096:10088805-10088934 + | CAAAATGTCCTTGATG-----ACTGGC-------A-------------------------TTCACACACACACA---------CACACACACACACATTTAAACACATCCATATGTACATCCATGTATACATTTATCTAATACAGAT----G--------------CAGAGCTCGGA--------------------------AC-----T--TCAAGTATAAGGCA |
| droVir3 | scaffold_13049:15807-15938 + | TATG-TGGCAGTAGAAATTTCTCCCATAAATATAT-----------------------------GTAC---------------CCTTTCCGTCTTTATGTTTGTTT------------------------GGTTGAATGGATCGAAC----TACAAATCTAGAGATTAGAAATTGGAAA-----------TCCGTATTCTAGTA-----------ATGTATCCAGAA |
| droMoj3 | scaffold_6500:17797597-17797712 + | CACACACAC--------------ACACACAG--AC------------------------------------------------TTTGGCTACAAAATGTTAACTTG------------------------AGTTTGAAATTTTCCAG-----GGAATATGAGTGAGAGGCGAGCGAAAG-----------CAGTGAACAGAGTGA-----A--CAATGTATAAAGTA |
| droGri2 | scaffold_14853:8203259-8203387 + | CAAATTAACAACAAGAATTCTTTCCAGCTCC--CT-------------------------CTCTCTCTCTCTCTCTCTCTCTA---------AC----------TC------------------------CGTCTC-----TCATTTCCGAGAGAGAGCTAGTTACATTGCTGAGAGAGAAGTGAAGAGAGCCGAGC-----------------------TTTGTTA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:26876804-26876940 - | GCACTCCCAGTCCCGGTCGTAGATGTGGGCGTAGGTGGCGGCGGGCGTGGCGTGCGTGATCCTGGTTGTGGTGACCACGCCGGTGCGCTTGCCCTCCTTCTGGGCCCACTCCATGACGCTCTGGACCCTGCCTTGCT---------------- |
| droSim1 | chr3R:26523820-26523956 - | GCACTCCCAGTCGCGGTCGTAGATGTGGGCGTAGGTGGCGGCGGGCGTGGCGTGGGTGATCCTGGTTGTGGTGACCACGCCCGTGCGCTTGCCCTCCTTCTGGGCCCACTCCATGACGCTCTGGACCCTGCCTTGTT---------------- |
| droSec1 | super_4:5701489-5701625 - | GCACTCCCAGTCGCGGTCGTAGATGTGGGCGTAGGTGGCGGCGGGCGTGGCGTGTGTGATCCTGGTTGTGGTGACCACGCCGGTGCGCTTGCCCTCCTTCTGGGCCCACTCCATGACGCTCTGGACCCTGCCTTGCT---------------- |
| droYak2 | chr3R:27815996-27816132 - | GCACTCCCAATCCCGGTCGTAGATGTGGGCGTACGTGGCGGCAGGCGTGGCATGGGTGATCCTGGTGGTGGTGACCACTCCAGTGCGCTTGCCCTCCTTCTGGGCCCACTCCATGACGCTTTGGACCCTACCTTGCT---------------- |
| droEre2 | scaffold_4820:1105506-1105642 + | GCACTCCCAATCCCGGTCGTAGATGTGGGCGTACGTGGCGGCAGGCGTGGCATGGGTGATCCTGGTTGTGGTGACCACTCCAGTACGCTTGCCCTCCTTCTGGGCCCACTCCATGACGCTTTGGACCCTGCCCTGCT---------------- |
| droAna3 | scaffold_12911:4046748-4046884 + | GCACTCCCAATCCCGATCGTAGATGTGGGCGTAGGTTGCAGCTGGCGTGGCGTGGGTAATCCGAGTGGTGGTCACTATTCCAGTTCGCTTCTTCTCCTTTTGGGCCCACTCCATGACGCTCTGAACGCGTCCTTGCT---------------- |
| dp4 | chr2:271882-272018 + | GCACTCCCAGTCGCGATCGTAGATGTGGGCGTAGGTGGCCGCAGGCGTGGCATGCGTAATCCTCGTTGTGGTCACGATTCCCGTGCGCTTGCCTTCCTTCTGGGCCCACTCCATGATAGTCTCAATCCGGCCCAGCT---------------- |
| droPer1 | super_7:3056347-3056483 + | GCACTCCCAGTCGCGATCGTAGATGTGGGCGTAGGTGGCCGCAGGCGTGGCATGCGTAATCCTCGTTGTGGTCACGATTCCCGTGCGCTTGCCTTCCTTCTGGGCCCACTCCATGATAGTCTCAATCCGGCCCAGCT---------------- |
| droWil1 | scaffold_181108:531799-531935 - | GCATTCCCAGTCCCGATCATATATATGCGCATAGGTTGAGGCAGGCGTGGCATGTGTAATTCTGGTAGTGGTAACAATTCCCGTTCGTTTACCCGCACGCTGGGCCCAATCCATAATGGATTCCACCCGACCCTGTT---------------- |
| droVir3 | scaffold_12855:1470098-1470234 + | GCACTCCCAGTCCCGATGATAGACACGCGCAAAGGTGGCTGCGGGCGTGGCGTGCGTAATGCGTGTGGTGGTCACCACGCCAGTGCGTTTGCCTTCACGCTGTGCCCAGTCCATGATGGAGTCGAGTCGACCCTGGC---------------- |
| droMoj3 | scaffold_6540:27213622-27213758 + | GCACTCCCAGTCCCGATGATAGATCCTTGCATAGGTGGCCGCAGGTGTGGCGTGTGTTATACGCGTGGTAGTCACGACGCCGGTCCGCTTGCCCTCACGCTGTGCCCAGTCCATGATGGAGTCGAGTCGACCCTGGC---------------- |
| droGri2 | scaffold_15203:6653367-6653519 - | GCACTCCCACCGCCGATCGGCGACATGGGCGTAGAGGGCAGCGGGTGTGGCATGGGTTACCCGCGTTGTGGTCACAAATCCAGTGCGCATGCCATCCACCTGCGCCCAGTTGAATATGTTCTGGACGTGATGTTCCTCCTTGAGAGAGGCACT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:27044980-27045109 - | TGCGAAACG----------------TGTTTGA-T------AATGCGCCGCCATCTTGCGGCACACTCGCACA-C------ACACA-CGTGTGCC-----------ATTCTGG-------TTTTGC--AGTGGTGTGCGTGTGTGCCTC-------GAGTCGTTGCGTCACTGGAAAAGTT-----------AGAAAATC |
| droSim1 | chr3R:26688146-26688275 - | TGCGAAACG----------------TGTTTGA-T------AATGCGCCGCCATCTTGCGGCACACTCGCACA-C------ACACA-CGTGTGCC-----------AGGCTGG-------TTTTGC--AGTGGTGTGCGTGTGTGCCTC-------GAGTCGTTGCGTCACTGGAAAAGTT-----------AGAAAATC |
| droSec1 | super_4:5862973-5863106 - | TGCGAAACG----------------TGTTTGA-T------AATGCGCCGCCATCTTGCGGCACACTCGC---ACACACACACACA-CGTGTGCC-----------AGGCTGG-------TTTTGC--AGTGGTTTGCGTGTGTGCCTC-------AAGTCGTTGCGTCACTGAAAAAGTT-----------AGAAAATC |
| droYak2 | chr3R:27981306-27981430 - | TGCGAAACG----------------TGTTTGA-A------AATCCGTCGCCATCTTGCGGCACACTCAC---AC------ACACA-CGTGTGCC-----------AATATGG-------T-TTGC--AGTGGTGTGCGTGT--GCCTC-------GAGTCGTTGCGTCACTGGAAAAGTC-----------AGAAAATC |
| droEre2 | scaffold_4820:935924-936048 + | TGCAAAACG----------------TGTTGGA-A------AATTCGCCGCCATCTTGCGGCACACACA-----C------ACACA-CGTGTGCC-----------AGTCTGG-------T-TTGC--AGTGGTGTGCGTGTGGGCCTC-------GAGTCGTTGCGTCACTGGAAAAGTC-----------CGAAAATC |
| droAna3 | scaffold_13340:14436299-14436405 - | CTCAAAACG----------------TGTTCAA-TGG----A----ATCGCCATCTTGCGGCTCACAC---------------ACA-CATGTGAC---------------------------------AGTTGTTCGTGCGTGTGTCTGG------GAGTCGTTGCGTCACTGAGAAAGTC-----------GGAAAAT- |
| dp4 | chr2:85298-85449 + | TAC-------ATTTTCTCGAAAACGTGTCGAA------------TGTCGCCATCTTGCGGCACACACAC---AGACACACACACA-CATGTGAC-----------GAGAGGAATTGCCAGT--GCTCAATAGTGTGCCTGTGTG--TC-------GAGACGTTGCGTCACTGAAAAAGTCGAACAGC--AAAGTAAATT |
| droPer1 | super_7:2877006-2877157 + | TAC-------ATTTTCTCGAAAACGTGTCGAA------------TGTCGCCATCTTGCGGCACACACAC---AGACACACACACA-CATGTGAC-----------GAGAGGAATTGCCAGT--GCTCAATAGTGTGCCTGTGTG--TC-------GAGACGTTGCGTCACTGAAAAAGTCGAACAGC--AAAGTAAATT |
| droWil1 | scaffold_181108:712012-712143 - | TGAAAAATGTATTTTATC--TA--------GA-G------ATATTGTCGCCATTTTGCGGCACTCAC-------------ACACA-CGTGTCAC-----------AAGA-GAACTGTCAAATTGT--AGCTGTATGCGTGAG----AC-------CAGTCGTTGCGTCACAGCAAAAGTT-----------TTCAAATT |
| droVir3 | scaffold_12855:1227223-1227391 + | TAA------TATTTTTTC--AAACGTGTTCAG------------TGTCGCCATCTTGCGGCACATACAC---ACACATTCAGACAAGATGTCACACGGACGTACGAAGA-GAACTGTCAGT--GTGTT-TTGTGTGCCGTAGTG--TGGAGTGTAAATTTGTTGCGTCACTAGAAAAGTTCAACTGT-TGAAGGAAATC |
| droMoj3 | scaffold_6540:26974787-26974936 + | TAA------CATTTTTTC--AAACGTGTTCAA------------TGTCGCCATCTTGCGGCTCACGCAC---ACACTCA--TGCAAGATGTCACACGGGCGTATGAAGA-GAACTGTCAGT--GTT--AC------------TGTGTG-------AAGTCGTTGCGTCACTAGAAAAGTTCAACGATTTGAAGAAAATT |
| droGri2 | scaffold_15245:5068344-5068468 + | G-CGACAAG----------------TGGTTGACTGCACCTGCACCCTCC-CAA---CAGACACACTCACACA-C------ACACA-CACAACCC-----------TCTGTGT-------GTGTGC--AAGTGTGTGTGTGTGTGTGTC-------AAA-CGCAGCA--ACTGCTGAAGTT-----------T----AAC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:3277158-3277280 + | TTTATACATTTG--TTTAT-----------------------AATGCACATAATAAATGCCAACC------ATTCATCATGA-AATTATAAATAGTAT--CATTTCAAGATGCATGG-TAAG-GCTT------TATTTT---------------------------------------------G--------TTTTGCA---ATCAAAGACATCTTTCTT |
| droSim1 | chr3R:3321450-3321569 + | TTTATATATATT-ATTTAT-----------------------TATGCTCAGCATAAATGCCAAGC------ATTCGTCGTGA-AATTATAAATTATATATTA--TATAAATTCATGG-TAAG-GCTT------CATTTT---------------------------------------------T--------TAACGCA---GTCTAAGACATC----TT |
| droSec1 | super_6:3368064-3368189 + | TTTATATATATT-ATTTAT-----------------------TATGCTCAGCATAAATGCCAAGC------ATTCGTCGTGA-AATTATAAATTATATATTATTTCTAGATTCATGG-TAAA-GTTT------CATTTT---------------------------------------------G--------TAACGCA---GTCTAAGACATCTTTCTC |
| droYak2 | chr2L_random:3663454-3663574 - | TTTAGCCAAGTT-A-ATT--------------------------TGGTAAAAACAAAAACCAGAA------ACCGGCTACAC-GATGAAACGCTAAATGCCATTTTAGCAGTC--AG-GTAATTATA------TATT--------------------------------------------------T--AT-TTTTAAA---TTTAAACCCATTTTTTAT |
| droEre2 | scaffold_4784:2237866-2237984 - | TTTCCAAATTTG-A-ATGC---AGA-TTTTT------------------AGACAATTGCTCCAGA------AACATT------------TAGAGGTATGCCACTTCAAAATACGA----TAATTGAAGGTTGAATTATG---------------------------------------------G-----AC--TTTAG----AACTTCAGCCTTCTTTTT |
| droAna3 | scaffold_13340:2198726-2198841 + | TTAATAATTTTA--TTTAT-----------------------CGAAC------TAATT-AGGCTT------TTCATACAGATTTAAGCTTAATATTAAATTA--TAG-------------------------------------------------------AGCACTGGCTGCGGTGGTATATA--T--AT--TTTTC----AATAAACACATTTTTATG |
| dp4 | chrXR_group6:912830-912970 - | TTTATACCACGC--ACTAGATTGGGTTCTCCAGATAACGAATGTTGTCCAGTAAAATCCCAATCCATTCAAATGGATTATGT-GACCA-------------GTGTTAAGATGCGTCG-AGGG-CAGT------CAGCTT---------------------------------------------G--------TGTTGCT---ATCTCGCTCCCCTCCGCC |
| droPer1 | super_3:249021-249147 + | TTTTAAATCTGTTCCCTAAAATATACTTTTTGAAC------------------GAG-------------------------A---------------------------------------G-AGTA------TATATGTATGTATGCCGAGCAACTTCTAGTACCCCCTACTCAAT-A----TGTTTTTTTTTGGCTTAGTAAAATAATACATCTATATC |
| droWil1 | scaffold_180708:152570-152690 - | TTTATATATATA-T-ATAT---GAT-GTAGA---TATA---TATTTTTTAT----ATTTAAATTTTT----------------------TTAAAGTGA--TTTTTGTCAA-GGCTAG-AAAA-GCTT------TATTTT-------------------------------------------TTGTTT-----TGTTTTA---GTTTATGCGATATTTCTT |
| droVir3 | scaffold_135:841-956 - | TATATATATGTG-A-ACAT---AAC-TTATA-------------------TAATA------------------------------------CATATGA--CATACTGCCAGAC--AAATAAA-CGTA------ACTATTTATGTTTGAA-------ATCAAGATCACCAAAATAAATGATGATTT--T--AT--TT--------------------TACAA |
| droMoj3 | scaffold_6308:1934837-1934961 - | TTTATATATTAT-A-AAAA---AAA-T-----------------TACTTAAATTAAAGCTTAGGA------AATATTTGTAT-CCATAAAAAATATGA--TATATTTTTATGCATGG-TAAA-TTTA------ATTTTT---------------------------------------------A--------ATTTCTA---ATAAAAAAAATTATATAT |
| droGri2 | scaffold_14906:7885716-7885837 + | ATTATTATTTTT--TTTTT-----------------------A--TTTCAAGTTAATTTACAATT------ATCGAACCGGT-TAAACTAAATTTTAGCTTA--TAGATATTTATTG--------------------------------------------------------CTTAATTAACTGTTTTT---TTTTGTT----GTTAAAACATTTTTTTT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:17142422-17142602 + | TTTGAA-AATCC-CTTCCTTTTCG----TACGT---ACAA-AAAAGCATCAGGT-TTTCGGGTGAGGTTTC--TGATGCTTTG---TCTCTTAAGTTTTTCCTAACAATT--------------------------------------AAA--C-----CCTATGTCGGTATTA-CGAATACCA-T------CAAAAAACCTCACCCACCAAATGTATGACCAGAGAGATAAAAA-T-TTCAATAAACAA-C------G- |
| droSim1 | chr3R:4327111-4327287 - | TTTCAAAAATCC-CTTCCTTTTCG----TACGT---ACAA-AAAAGCATCAGGT-TTTCGGGTGAGGTTTC--TGATGCTTTG---TCTCTTAAGTTTTCCCTAAAAATA--------------------------------------AGA--C-----CCTATGTCGGTATTT-CGAATACCA-T------CAAAAAACCTCACCCACCAAATGTATGACCAGAGAGATAAAAA-T-TTCAATAAA------------- |
| droSec1 | super_6:4348795-4348971 - | TTTCAAAAATCC-CTTCCTTTTCG----TACGT---ACAA-AAAAGCATCAGGT-TTTCGGGTGAGGTTTC--TGATGCTTTG---TCTCTTAAGTTTTCCCTAACAATT--------------------------------------AGA--C-----CCTATGTCGGTATTT-CGAATACCA-T------CAAAAAACCTCACCCACCAAATGTATGACCAGAGAGATAAAAA-T-TTCAATAAA------------- |
| droYak2 | chr3R:5943432-5943618 + | TTAAAAAAATTCATTTACTTTACG----TGCGT---ACAAAAAAAGCATCAGGT-TTTCGGGTGAGGTTTC--TGATGCTTTG---TCTCTTAAGTTTTTCCTAACAACT--------------------------------------AGT--C-----CCTATGTTGGTACTA-CGAATACCA-AAT----CAAAAAACCTCACCCACCAAAAGTATGAACAGAGAGATAAAAA-T-TTCAATATAAAAAC------A- |
| droEre2 | scaffold_4770:4529493-4529670 - | T---------AT----------TGTACGTAAGC---ATTA-TTAAGCATCAGGT-TTTCGGGTGAGGTTTC--TGATGCTTCG---TCTCTTAAGTTTTCCATAACAATT--------------------------------------GGT--C-----CCTATGTTGGTATTA-CAAATACCA-TAC----CAAAAAACCTCACCCACCAAATGTATGAACAGAGAGATAAAAA-T-TTCAATAAAAAAATGTTGTCGA |
| droAna3 | scaffold_13340:3794779-3794949 + | T---------CT-CTACATTAATA----TTATC---ATGG-AAAAGCATCAGTTTTTTCGGGTGAGGTTATACTGATGCTTAG---TCATTTCAATTGCCCAAAATAATT--------------------------------------GAA--T-----TTT-AATTGGTATTTTTCAATACCC-A------AGACTAACCTCACCCACCAAATATATGAACAAAGAGATATAAA-T-TTCAATAAA------------- |
| dp4 | chr2:5640393-5640558 + | C---------CC-CGTCAATATTG----TAATT---AAAATAAAAGCATCCGAG-CTTCGGGTGAGGTTAT--GGATGCATTTTGATCTCTGCACTTATCTCCAA--------------------------AA-------------------CC-----CC--CTTTTGTATGGAAACATACCA-C-C----CAAATAACCTCACCCACCAAAT-TATGAACAAAGAGAAAAAAA-T-TTCAATAAA------------- |
| droPer1 | super_19:1368761-1368939 + | C---------CC-CGTCAATATTG----TAATT---AAAATAAAAGCATCCGAG-CTTCGGGTGAGGTTAT--GGATGCATTTTGATCTCTGCACTTATCTCCAA--------------------------AA-------------------CC-----CC--TTTTTGTATGGAAACATACCA-C-C----CAAATAACCTCACCCACCAAAT-TATGAACAAAGAGAAAAAAA-T-TTCAATAAACACAAAACCACG- |
| droWil1 | scaffold_181130:16134997-16135163 + | T---------AA-AT--CTTACTG----TTATC-----CA-AAAATCATCACGG-TTTCGGGTGAGGTTAG--TGATGACTTTTCCTTTTT----------CAAACAACTAA--AATTTTAATTCCAA---AA-------------------AC-----CC--TTTCGGTATAG-ACAATACCA-A------AAAAAAACCTCACCCACCAAATATATGAACAAAGAGAAACAAA-TTTTCA------------------ |
| droVir3 | scaffold_12822:1191963-1192168 - | CTT--------------AATGTCG----TACGACTTA-TG-AGAAGCATCTAG--TTTCGGGTGAGGTTTTA-TGATGCAATTCTCGCTCT---ATCC-------CATCTTG--AACATACGTTCCAAAAT--AAATACATAATAAAAAAATCC-----CCTGCTTTGGTATTT-AAGCTACCA-ACCA---AAAAAAACCTCACCCACCAAATGTATGAACAAAGAGATAAAAAATTTTCAATACACCA-T------G- |
| droMoj3 | scaffold_6540:33813435-33813629 - | C---------CTCCTCCCAAGTTG----TACAGCTTG-TG-AGATGCATCAGAT-TTTCGGGTGAGGTTTTA-TGATGCAGTACTC--CAT---GTCCC-------ACTCCGAATACTAAAAT----------AA----------AAAGAATCCTTCTCCC--ATTTGGTATTA-AAGCCACCCAC-C----AAAAAAACCTCACCCACCAAACATATGAACAAAGAGATACAAAATATTCAATACAACAAC-------- |
| droGri2 | scaffold_15074:2653282-2653451 + | T---------G----------TCG----TACGACT-AATG-AAATGCATCTAGT-TTTCGGGTGAGGTTTT--AGATGCGTT---------------TCCCCCAGAAAAT-----------------------A--------------AAA--C-ACT-CC-TTTTTGGTATTT-AAACTACAA-AAAAAAAAAAAAAACCTCACCCACCAAATATATGAACAAAGAGATAAAAT-A-TTCAATAAACCAACAAACCCG- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:18306519-18306675 + | CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGTAGCGGGGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA |
| droSim1 | chr3R:18115675-18115831 + | CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGTAGCGGGGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA |
| droSec1 | super_0:18660821-18660977 + | CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATATTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGATTGCACGCCGCCATTCGAATCGGGTAGCGGGGATGATCTCATAACACCAGTCTACGTGCCGCCCACCAAGCA |
| droYak2 | chr3R:19151970-19152126 + | CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGAAGCGGAGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA |
| droEre2 | scaffold_4820:9770831-9770987 - | CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGAAGCGGGGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA |
| droAna3 | scaffold_12911:5347592-5347748 + | CTCCGGCGAGTGGCTATCCGGGTGCCCTGGACGATCTGATCTTCTCGGGAGCGGGATCCGGGTGCCGGGGCGATGACGAGGACGAGTGCACGCCACCCTTCGAGTCGGGCAGCGGGGACGACCTGATCACTCCGGTGTATGTACCGCCCACCAAGCA |
| dp4 | chr2:13773155-13773311 - | CGCCGGCCAGCGGCTATCCCGGCACCATTGACGATCTGATCTTCTCCGGGGCCGGGTCCGGGTGCCGCGGCGACGACGAGGACGAGTGCACACCGCCCTTCGAGTCGGGCAGCGGCGATGACCTCATCACGCCCGTGTATGTGCCACCCACCAAGCA |
| droPer1 | super_0:6673715-6673871 + | CGCCGGCCAGCGGCTATCCCGGCACCATTGACGATCTGATCTTCTCCGGGGCCGGGTCCGGGTGCCGCGGCGACGACGAGGACGAGTGCACACCGCCCTTCGAGTCGGGCAGCGGCGATGACCTCATCACGCCCGTGTATGTGCCACCCACCAAGCA |
| droWil1 | scaffold_181089:2782020-2782176 + | CGCCGGCCAGTGGCTATCCTGGGGCCATAGATGATCTTATATTCTCCGGTGCCGGATCCGGTTGTCGCGGCGACGATGAAGACGAATGTACGCCGCCCTTCGAGTCGGGCAGTGGAGATGATCTAATCACACCTGTCTATGTGCCTCCGACAAAACA |
| droVir3 | scaffold_12822:645540-645696 - | CGCCTGCGAGCGGCTATCCGGGCGCCATAGACGATCTGATCTTCTCCGGGGCCGGGTCCGGTTGTCGCGGCGACGACGAGGACGAATGCACGCCCCCCTTCGAGTCGGGCAGCGGGGATGACCTAATAACGCCCGTCTATGTGCCGCCCACCAAGCA |
| droMoj3 | scaffold_6540:33300209-33300365 - | CGCCGGCTAGTGGCTATCCGGGCGCCATAGACGACCTGATCTTCTCCGGAGCCGGATCTGGGTGTCGCGGCGACGACGAGGATGAATGCACGCCGCCCTTCGAGTCGGGCAGTGGGGATGACCTGATCACACCCGTCTATGTGCCGCCCACCAAACA |
| droGri2 | scaffold_15074:3142694-3142850 + | CGCCGGCGAGTGGTTATCCGGGTGCGATAGACGATCTGATCTTCTCCGGTGCGGGATCCGGGTGTCGCGGCGACGATGAGGACGAATGCACGCCGCCCTTCGAGTCGGGCAGCGGGGATGATCTAATTACGCCCGTCTATGTGCCACCCACCAAACA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:18599846-18599969 + | CGTAAGAATA-------------TTG-------CACTAAAGTTCACAGGCGACCATGA-AT---GTTAATAAAG----A--------ATAT---------------------TTACCAATAAAGTTTTATTTTTTATTGAAGGTCATGGACATCCTTGAACCGATTTTGCAACATG-----CATGT |
| droSim1 | chr3R:18412164-18412275 + | CGTAAAAATA-------------TTG-------CACGAAAGTTCGCAGGCGACCATGA-AT---GTTAATAAAG----A--------ATAT---------------------TTACCAATAAAGTTTTGTTTTTTATTAAAGGTCATGGACATCCTTGAACG--------------------GTGT |
| droSec1 | super_0:18960705-18960813 + | CGTAAAAATA-------------TTG-------CACGAAAGTTCGCAGGCGACCATGA-AT---GTTAATAAAG----A--------ATAT---------------------TTACCAATAAAGTTTTGTTTTTTATTAAAGGTCATGGACATCCTTGAACG--------------------GTGT |
| droYak2 | chr3R:19450585-19450700 + | TGCTCAAATT-------------TTG-------CACGAAAGTTCGATGGCGACCATGA-AT---GCGAATGAAG----A--------ATAT---------------------TTACCATTAGTGTTTTGCTCATTATTGAAGGTCATGGACATCCTTGA-----TTTTGCAAAATG--------TT |
| droEre2 | scaffold_4820:9473651-9473779 - | CGCTAAAATA-------------TGG-------CACGAAAGTTCACTGGCGACCATGA-AT---GTTAATAAAG----A--------ATAT---------------------TTACCATAAAGATATGTTTTTTTATTGAAGGTCATGGACATCCTTGAACCGATTTTGCAATATGTTCTACGTGT |
| droAna3 | scaffold_13340:12717426-12717507 - | GGGGAAAAAA-------------TGA-------AAAGAA-----ACAAATGACCTTAGTAGGTCAGTGACTAAATTTTTGCCCATAA----GT-----------------------------GATTTAATCGTATATCAA---------------------------------------------- |
| dp4 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| droPer1 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| droWil1 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| droVir3 | scaffold_12822:414561-414651 - | TGCAAGCAAA-------------TTT-------TGCCTAAGTTCTGA------------------CTAATAACT----A--------ATGT---------------------ATGTACTTAATGTTATTGTGATAAATTAATGTTATTTGTAACCAA------------------------AATGT |
| droMoj3 | scaffold_6540:33042485-33042630 - | CGTAGTTTGACCACATAGAGACATCAAGTCTAAGAGGAAAACTCA--------TTTGG-AC---ACTGATTAAAAATCAGTCCCGAT----GAGAGCGAT------------AT---ATTAACATTAATTTTCTTATTGCATTTTACGTATATTTTTTTTTTGCTTTTAACA---------TACAT |
| droGri2 | scaffold_15074:3394740-3394844 + | GTATGATACA-------------------------TTAAAGTTCTCCATAATCAATTT-GT---GT-------------------------GTGTGTGTGTCATCGACAAATTTACCATCTTAACTACACTTATTTTCAAAAT-------------------A-TTTCACATA--------TATTT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:1923021-1923142 - | ATATAAGTGTTCG--------ATTTGGCGCTTGGAATCGATACCCGAGCCATGATAGATTGAAGTCAA-CCCA-ATC----G----------ATC-GC-GGT-TCGAGTGCTCGAGTCTTGTGCGCCGGCATGC-TTGAGAT---GTCCACTA |
| droSim1 | vgb65a08_5.b1:263-385 - | ATATAAGTGTTCG--------ATTTGGCGCTTGGAATCGATACCCGAGCCCTGATAGATTGAAGTCAA-CCCA-ATC----G----------ATC-GC-GGT-TCGGGTGCTCGAGTCCTGTGCGCCGGCATGC-TTGAGAT---GTCCACTA |
| droSec1 | super_10:1708076-1708197 - | ATATAAGTGTTCG--------ATTTGGCGCTTGGAATCGACACCCGTGCCCTGATAGATTGAAGTCAA-CCCA-ATC----G----------ATC-GC-GGT-TCGGGTGCTCGAGTCTTGTGCGCCGGCATGC-TTGAGAT---GTCCACTA |
| droYak2 | chrX:6403257-6403382 + | ACATAAAAGTTCA--------ATTTGGCGCTTGGAATCGTAACTCGAGCCCTCAAAGATTGAAGTCAAATGCA-ATC----G----------ATCCGG-GGTGTCGAGTGCTCGATTCTGGTGCGCCGGCATGCTTTGAGAT---GTCCACTA |
| droEre2 | scaffold_4644:1895276-1895400 - | ATATAAGTGTTCG--------ATTTGGCGCTTGGAATCGAACCTCGAGCCCTGACAGATTGAAGTCAA-CCCAAAAC----G----------ATC-CCGGGG-TCGAGTGTTCGAGTCCGGTGCGCCGGCATGCTTTGAGTT---GTCCACTA |
| droAna3 | scaffold_12929:1917028-1917098 - | ATATCCTTGACTT-------------------------CATAA-GGAACAATGA---------------------------------------TC-AT--GT--------------TAAGGTTCTCAGGCATGTCTCGAGATTATATCGAATC |
| dp4 | chrXL_group1a:2597066-2597203 - | ATATAAATACATACTGCATAGTGTAGCAGAATGGACTCGGAACTCGATCCATGCATGCCACATGCCACATGCC-ACATGTCGCAGAGGGGGCAGC-GT-GGC-TCGAGTGCCAGAGTCCGGCGAG-------GC-ATGAGAC---TACTTACC |
| droPer1 | super_28:1034311-1034357 - | A--------------------------------------------------------------------------------------------GC-GT-GGC-TCGAGTGCCAGAGTCCGGCGAG-------GC-ATGAGAC---TACTTACC |
| droWil1 | Unknown | --------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | Unknown | --------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | scaffold_6473:2911987-2912050 + | ATATATGTGTGTG--------TGTTTGTGTATTGTATTTAGATTTGAGCTATAAAATGTTTAATAAAA-CTCA-------------------------------------------------------------------------------- |
| droGri2 | Unknown | --------------------------------------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:2438757-2438956 - | T--T-GCTGATGTCAA-----ATCACCGATTTGCTTCCCCT-TTT----------------------------------TCCGTGCGCGGAGAAAAAAATCCCCAGAAACATAATATCAGGATGCTCTCTATC------------------------TCTGTCTCTGTCTAACGCTTA-----ATTGTTGCT-CAATTGCGAATTAATGTC------------------------------------------------------TGGGGCTTTTTTT---CTCCGTGCAGTGCCATAGCCGTA------------------------------------------------------------A-CCAC------------------------AACCTGCCAGCCGT-TTAAAGC |
| droSim1 | chrX:1743323-1743545 - | T--T-GCTGATGTCAA-----ATCACCGATTTGTTTCCCTT-TTT----------------------------------TCCGTGCGCGGAGAAAAAAATCCCCAGAAACATAATATCAGGATGCTCTCTATATCTATCTCAGTCTGGGCCCAAGTGTCTGTCCCTGTCTGACGCTTA-----ATTGTTGCT-CAATTGCGAATTAATGTC-------------------------------------------------------GGGGCTTTTTTT---CTCCGTGCAGTGCCATAGCCGTA------------------------------------------------------------A-CCAC------------------------AACCTGCCAGCCGT-TTAAAGC |
| droSec1 | super_10:2212704-2212927 - | T--TTGCTGATGTCAA-----ATCACCGATTTGTTTCCCCT-TTT----------------------------------TCCGTGCGCGGAGAAAAAAATCCCCAGAAACATAATATCAGGATGCTCTCTATATCTATCTCAGTCTGGGCCCAACTGTCTGTCCCTGTCTGACGCTTA-----ATTGTTGCT-CAATTGCGAATTAATGTC-------------------------------------------------------GGGGCTTTTTTT---CTCCGTGCAGTGCCATAGCCGTA------------------------------------------------------------A-CCAC------------------------AACCTGCCAGCCGT-TTAAAGC |
| droYak2 | chrX:5905985-5906183 + | T--T-GCTGATGTG-------TTCACCGATTTGTTTCCCCT-TTT----------------------------------TCCGTGCGCCGAGAAAAAAATCCCCAGAAACATAATATCAGGATGCTCTC----------------------------CCTGTCTCTGTCTTACGCTTAATTTAATTGTCGCT-CAATTGCGAATTAATGTC------------------------------------------------------GGGGGCTTTTTTT---CTCCGTGCAGTGCCATAGCCGTA------------------------------------------------------------A-CCAA------------------------AACCTGCCAGCCGT-TCAAAGC |
| droEre2 | scaffold_4644:2389120-2389318 - | T--T-GCTGATGTG-------TTCACCGATTTGTTTCCCCT-TTT----------------------------------TCCGTGCGCTGAGAAAAAAATCCCCAGAAACCTAATATCAGGATGCTCTCTGTCTC----------------------CCTGTCTCTGTCTCACGGCAA-----ATTGTTGCT-TAATTGCGAATTAATGTC-------------------------------------------------------GGGGCTTTTTTT---CTCCGTGCAGTGCCATAGCCGTA------------------------------------------------------------A-CCAC------------------------AACCTGCCGACCGT-TTAAAGC |
| droAna3 | scaffold_12929:2354513-2354742 - | G--T-GTTTCTTCCAA-----ATCTTCACTTCTCTTCTCTTTTCTTTTCTTTCCTTCTTCTGTTTTTTTTTTTTGTTGGTCCCTGCACGGAGAAGAAGTTGTTAGGACA-------TT-----------------------A----------------------------------------------------GAGTGGACCTTAG---TGTGGTTAATAGATCATATGACTCATTGTCCTTGCAATT--ATTTCACAACTCGCT-CCAC-TTTTCT---CTCTGTGCAGTGCCATAACCGTA------------------------------------------------------------A-CCAC------------------------AACCTGCCAGCCGT-TCAAAAA |
| dp4 | chrXL_group3a:2134676-2134849 - | TTTC-GCTGATTCGGGAATATATTCTCCACCCCCCCACCCT-CTACCA--TTTC-------------------------CTCTTCTGCTGACCTA----------------------CACGATTTTCCCCCTC----------------------------TCTCTT---------------------------------------------------------------------------AACGATCTTAACGCTCCACTCTTT-CTGT--CTCTCTCGATTTTTGCAGTGCCATAGCCGTA------------------------------------------------------------AAACAC------------------------TGTCTTCCTACCGT-TTACCGT |
| droPer1 | super_13:248212-248305 - | T--C-TCTGG--------------------------------------------------------------------------------------------------------------------------C------------------------TCTGTCTCTGTCTCAGGCGTA-----ACAGGTGCGTTGAGTGCATTTCAATTGT-------------------------------------------------------ATGGATA---------ATTGTGCTGTATTGTAATTGAA------------------------------------------------------------ATCCAC------------------------AA-------------------- |
| droWil1 | scaffold_181096:12164007-12164188 - | T--C-GCTGATTTTGGAAAACATTTCTTATTTGCTCTCCTT-TAATTTATGTTTTT---------------------------------------------------------------------------------------------------------------------TTTTT-----GTTGTTGTT-CTTTTGTATATTTTT----------------------------------------------------------TATGT--TTATT---TTGTTTGCAGTGCCATAA-CATAATAATAGTTAATACTTATTGTGTTCACACAAAAATTTTGGGCCGCCGAATCGAAAACGAAT-------------------------------------------ATCAAAAC |
| droVir3 | scaffold_12928:1476007-1476072 - | T--T-T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTT---TTACTTGCAGTGCCATAAACATCGTA---------------------------------------------------------A-CCTTTTT-C--TTTCTTTATCACGTCTAAACGC---------------AT |
| droMoj3 | scaffold_6473:13536163-13536218 + | C--G-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTC---TCTCTTGCAGTGCCATAAACATCGTA-------------------------------------------------------------AT-------------------------TTTTTTCATTTAT-TTACGTC |
| droGri2 | scaffold_15203:8273975-8274075 + | AATA-GCTGAA-----------------ATTTGTTTTCCTC-A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTGCAGTGCCATAAACATCGTA---------------------------------------------------------A-CCTTTTTTCTTTTTTTTTCTTACGTCAAAACGCATCGATCGCATCAGAGG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:6979754-6979901 - | GAGTGCCAACAATTTAGGGG---------GCGGCAACATGTGCCACCTGCCGCCGATGGCCAGCAACAACTCGCTGAATAATCTCTGCGGATTGTCGCTGGGCAGCGGTGGTAGTGATGATCTCATG------AACGATCCTCGGGCAAGCAACACCAACCTG |
| droSim1 | chrX:5492772-5492919 - | GAGTGCCAACAATCTAGGGG---------GCGGCAACATGTGCCACCTGCCGCCGATGGCCAGCAACAACTCGCTGAATAACCTCTGCGGATTGTCGCTGGGCAGCGGTGGTAGTGATGATCTCATG------AACGATCCTCGGGCAAGCAACACCAACTTG |
| droSec1 | super_24:199934-200081 - | GAGTGCCAACAATCTAGGGG---------GCGGCAACATGTGCCACCTGCCGCCGATGGCCAGCAACAACTCGCTGAATAATCTCTGCGGATTGTCGCTGGGCAGCGGTGGTAGCGATGATCTCATG------AACGATCCTCGGGCAAGCAACACCAACTTG |
| droYak2 | chrX:14374793-14374940 + | GAGTGCCAACAATCTGGGGG---------GCGGCAACATGTGCCACCTGCCGCCGATGGCCAGCAACAATTCGCTGAATAACCTCTGCGGACTGTCGCTGGGCAGCGGCGGTAGCGATGATCTCATG------AACGATCCCCGGGCAAGCAACACCAACCTG |
| droEre2 | scaffold_4690:15890244-15890391 - | GAGTGCCAATAATCTTGGGG---------GCGGCAACATGTGCCACCTGCCGCCGATGGCCAGCAACAATTCGCTGAATAACCTCTGCGGACTGTCGCTGGGCAGCGGCGGTAGCGATGATCTCATG------AACGATCCCCGGGCAAGCAACACCAACCTG |
| droAna3 | scaffold_13117:2326296-2326455 - | CAGTGCCAATTCCCTTGGCGGCGGCGGTGGCGGCAACATGTGCAACCTGCCGCCCATGACCAGCAACAATTCGCTTAACAATCTGTGCGGCCTGTCGCTGGGCAGCGGCGGCAGCGACGATCACATGCTT---AATGACCAGCGGCCGAGCAACACCAACCTG |
| dp4 | chrXL_group1a:6391512-6391662 - | CAGTGCCAATAATCTTG------------GCGGCAACATGTGCAACCTGCTGCCAATGACCAGCAACAATTCGCTTAGCAATCTATGCGGACTGTCGCTGGGCAGCGGCGGCAGCGATGATCACATGATGATGCACGATCAGCGATCGAGCAACACCAATCTG |
| droPer1 | super_25:931278-931428 + | CAGTGCCAATAATCTTG------------GCGGCAACATGTGCAACCTGCTGCCAATGACCAGCAACAATTCGCTTAGCAATCTATGCGGACTGTCGCTGGGCAGCGGCGGCAGCGATGATCACATGATGATGCACGATCAGCGATCCAGCAACACCAATCTG |
| droWil1 | scaffold_180777:2984533-2984680 + | CAGTGCCAATTCCCTTGGCG---------GTGGCAATATGTGCAATATGCCACCGATGGCCAGTAACAATTCATTGAACAACCTGTGCGGTCTATCATTGGGCAGCGGCGGCAGCGATGATCTTATG------AACGATCATCGTCCGAGTAATACCAATTTG |
| droVir3 | scaffold_12928:60655-60799 - | CAGCGCCAATTCCCTTG------------GCGGCAACATCTGCAATATGCCGCCAATGGCCAGCAACAATTCGCTGAACAATCTGTGCGGCCTATCGATTGGCAGCGGCGGCAGCGATGATCACATG------AACGATCAGCGCAACAGCAACACCAATTTG |
| droMoj3 | scaffold_6359:1380681-1380818 - | C-----CAATTCCCTCG------------GCGGCAACATCTGCAACATG---CCAATGGCCAGCAACAATTCGCTGAACAATCTGTGCGGCCTATCGATCGGCAGCGGCGGCAGCGATGATCTGATG------AACGATCAGCGCACAAGCAACACCAATTTG |
| droGri2 | scaffold_14853:6692716-6692854 - | CAGCGCCAATTCACTCGGCG---------G---A---CTCTGCAACATG---CCGATGGCCAGCAACAATTCGCTGAACAATCTGTGCGGCCTATCGATAGGCAGCGGGGGCAGCGATGATCTTATG------AACGATCCACGCAACAGCAACACCAATTTG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:15213971-15214085 - | CTTTTTTTT--------------CTCTGCTC----GT-----------------------T--GTA--------TTTTACGCA--CTCTGCTGGCAGCG---CTGTCGGC---GTCGCTGCCAGCTGCCAGCAGCGAGCGGTACACTT--------GCAACTATC-----CTGT-GCACCCTACAATT |
| droSim1 | chrX:11736931-11737042 - | CTTTTTTTTTTTT----------CTCTGCTC----GT-----------------------T--GCA--------TTTTACGCA--CTCTGCTGGCAGCG---ACGCCGAC---AGCGCTGCCA-------GCAGCGAGCGGTACACTT--------GCAACTATC-----CTGC-GCACCCTACAATT |
| droSec1 | super_56:101687-101796 - | CTTTTTTTTT--T----------CTCTGCTC----GT-----------------------T--GCA--------TTTTACGCA--CTCTGCTGGCAGCG---ACGCCGAC---AGCGGTGCCA-------GCAGCGAGCGGTACACTT--------GCAACTATC-----CTGC-ACACCCTACAATT |
| droYak2 | chrX:9414156-9414285 - | TTTTTTT----------------CTCTGCTC----GTTTTTCTCTCTTTTTCTTCTCGCCT--GCA--------TTTTACGCA--CTCTGCTAGCAGCG---ACGCCGAC---TGCGCTGCCA-------ACAGCAAGCGGTACACTT--------GCAACTATT-----CTAT-GCACCCTACAATT |
| droEre2 | scaffold_4690:11807313-11807440 + | TTTTTT-----------------CTCCGCTC----GTTTTTCTCTCCTTTTCTGCTCGCCT--GCA--------TTTTACGCA--CTCTGCTGGCAGCG---ACGCCGAC---TGCGCTGCAA-------ACAGCGAGCGGTACACTT--------GCAACTATT-----CTGT-GCACCCTACAATT |
| droAna3 | scaffold_13117:1427273-1427395 - | ATTTTTCTTC---CCATGCAACC-TGTGTCC----AT-----------------------TGTACG--------TTTTACGCA--CTCTCC--CCAGCA---ACACCGCC---GCCGATAGCG-------ACTGCGACGAGTACGTTG--------GCAGCGGCACTTGACTCT-TTTTGCGGCAATT |
| dp4 | chrXL_group1e:12152468-12152588 - | CTTTAGCTTT---TTG--------------CGTTTGCGTTTGCCCCGATTTCAATGCA-AT--GTG--------TTGTACGCA--CACGGGTT---TTT---ATCTCAGC---TGTGGGATGA-------ACGGC--CCGAGACACTT--------GC--CGATG-----CGGC-GA-CCC--CAGGC |
| droPer1 | super_14:1456573-1456693 + | CTTTAGCTTT---TTG--------------CGTTTGCGTTTGCCCCGATTTCAATGCA-AT--GTG--------TTGTACGCA--CACGGGTT---TTT---ATCTCAGC---TGTGGGATGA-------ACGGC--CCGAGACACTT--------GC--CGATG-----CGGC-GA-CCC--CAGGC |
| droWil1 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | scaffold_12928:4095173-4095244 - | CTCTTTATTG---CAA--------------------------------TGCGAC-----------------------TACGCATGATTTAGGCGCAGGT---TGGTCG----------------------------------ACACTT--------GCATTGGTT-----GC--------AAGTACTT |
| droMoj3 | scaffold_6680:3750941-3751063 - | TTTGTTTTTG---TTT-----------TCTT----TT-----------------------T--GTAGCCTAGGAATTTACC-----TCTTGTGGCATATCAGCTGTTGGC---TTTGGTTGCA-------AACACACG--TTGACTTTTCACACACAGAATTCTG-----TTGAAATGTTTAACACTT |
| droGri2 | scaffold_14853:566008-566117 + | CTCTTTTATT----------------------------------GCAATGAGACTGCG-AC--GCA--------TGATTTGGG--CGCAGG-------T---CTATCACCACTTGCACTGACG-------ACTGCTTTTGCTTTTGCT--------ACTACTTTT-----ACTT-GCCAGCGGAACTT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:15974940-15975104 - | GTCCG------------------------------------A------ACCGTACGATCTCT--------------------------------GGCAGCTGCAGTTCCGTTT------CCGGAGCGGGATCTGGAACGGGCTCTGGTTCTAGATCAGGATCCAATCATGCACCCGGTCCAGGTACCGCTCCAGGTCCCGTTCCCGGAAACGGTGCCACCGCCAATGCAGCTGCAGCGGCATTCA |
| droSim1 | wgm54c09.g1:392-557 + | GTCCG------------------------------------A------ACCGCACGATCTCT--------------------------------GGCAGCTGCAGTTCCGTTT------CCGCAGCGGGATCTGGGACGGGCTCTGCTTCTAGATCAGGATCCAATCATGCACCCGGTCCAGGTGCCGCTCCAGGTCCCGTACCCGGAAGCGGAGCCACCGCCAATGCAGCTGCAGCGGCATTCA |
| droSec1 | super_47:33133-33297 - | GTCCG------------------------------------A------ACCGTACGATCTCT--------------------------------GGCAGCTGCAGTTCCGTTT------CCGCAGCGGGATCTGGCACGGGCTCTGCTTCTAGATCAGGATCCAATCATGCACCCGGTCCAGGTGCCGCTCCATGTCCCGTACCCGGAAACGGAGCCACCGCCAATGCAGCTGCAGCGGCATTCA |
| droYak2 | chrX:10123735-10123899 - | GTCCA------------------------------------A------ATCCCACGATCTCT--------------------------------GGCAGCTGCAGTTCCGTTT------CCGCAGCGGGTTCTGGAACGGGCTCTGGTTCTGGATCCGGATCCAATATGGCATCCGGTCCTGGTACCGCTCCAGTTCCCGTACCCGGAAACGGTGCCACCGCCAATGCAGCTGCAGCGGCCTTCA |
| droEre2 | scaffold_4690:11103030-11103194 + | GTCCA------------------------------------A------ATCCCACGATCTCT--------------------------------GGCAGCTGCAGTTCTGTTT------CCGGAACGGGTTCTGGAACGGGCTCTGGTTCGGGATCCGGATCCAATCTGGCACCCGGTCCTGGTACTGCTCCAGTTCCCGTACCCGGTAACGGTGGCACCGCCAATGCAGCTGCAGCGGCATTCA |
| droAna3 | scaffold_13165:312527-312640 - | GCATA------------------------------------A------GCCACATGGACTCT--------------------------------G---------------------------------------------------------GATCAGGCTCCGTATCTGCGTCAATTTTGGGCACCGGTCCAGGCCCTTTACATGGAAATAGTGCGACCTCGAATGTCTCTTCTGCACCCTTTA |
| dp4 | chrXL_group1e:9575758-9575916 - | GCCCC------------------------------------A------ATCCCAATGCCAGC-----------------------------AACGGCAGCTGTGGCTCCGCCTCTGCCTCCGGTTCGTCCAGTGGCTCG-GCACCGGCTCCGGCTCAGGGTCAGACTCAGGCCACGACTCAGGCACCG-----------ACTCACGGCAACACTTCGG---CCGGTGGCACAGCCTCGGCGTACT |
| droPer1 | super_22:633193-633346 + | GCCCC------------------------------------A------ATCCCAATGCCAGC-----------------------------AACGGCAGCTGTGGCTCCGCCT------CCGGTTCGTCCAGTGGCTCGGCACCGGTTCCGGGCTCAGGGTCAGACTCAGGCCACGACTCAGGCACC-----------AGCTCACGGCAACACTTCGG---CCGGTGGCACAACCTCGGCGTACT |
| droWil1 | scaffold_181096:10624772-10624892 + | CTGCATCATCGGCATCGCCAACTTATCAGAAGGGCAGTCCGAATCCAAATCCCAAT---------------------CTGAATGCAAATGCAACGGC--------------------------------------------------------------------------T------------------------------GGTGGCTCTGGAGCCAGTTCATCTGCTGCCACCGCTGCCTTTA |
| droVir3 | scaffold_12472:523224-523310 + | GCCCG------------------------------------A------ATCCCAATGGCGGT--------------------------------GGCTCCAGCGGTGCC------------------------------------------------------------------------------------AGTCTATCTGGCAGTAACAATGTGACTGCCACCGCTACAGCCGCCGCCTTTG |
| droMoj3 | scaffold_6308:2944361-2944510 - | GCCCG------------------------------------A------ATCCCAATGGCGGCGGCAGCGGCGCCGGTGG--------------------CGGTGGCGGTGCCGCTGCTGCTGGCTCCAACGGTGGC------------------------GGAAGTCT---------CTCGGGCAGCAGCAGCAGCAATGCAGCCACAGCCAATGCTACAGCCACCGCCGGTGGCGCGGGCTTTG |
| droGri2 | scaffold_15203:4433131-4433217 - | GCCCG------------------------------------A------ATCCCAATGGCTGT--------------------------------GTCTCCAGCGGTGCC------------------------------------------------------------------------------------AGTCTCTCTGGCAGCAACACTGTGACTGCCACCGCTACTGCCGCCGCCTTTG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:19063148-19063296 - | TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC |
| droSim1 | chrX:14724057-14724205 - | TGCTCATGGCCCTGATGTCCGGCTTGAACCTTCTGTGCCGGCTGGCCATGATCTGCAGCAGGTACCTCCGAGAGCAGATGATACGCAGCCAGCTGCGTTTCATGACCAAGCGGCATGTGAAGCGTGCCCTGCGTGACCTGACCATCGGC |
| droSec1 | super_8:1352288-1352436 - | TGCTCATGGCCCTGATGTCCGGCTTGAACCTTCTGTGCCGGCTGGCCATGATCTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGCTGCGTTTCATGACCAAGCGGCATGTGAAGCGTGCCCTGCGTGACCTGACCATCGGC |
| droYak2 | chrX:17654811-17654959 - | TACTGATGGCCCTGATGTCTGGCCTAAATCTCCTCTGCCGGCTGGCCATGATCTGCAGCGGGTATCTTCGGGAGCAGATGATACGCAGCCAGTTGCGGTTCATGACCAAGCGGCATGTGAAGCGCGCCCTGCGCGACCTCACCATCGGC |
| droEre2 | scaffold_4690:9326382-9326530 - | TGCTGATGGCCCTGATTTCCGGCCTGAACCTCCTCTGCCGGCTGGCCATGATCTGCAGCAGGTATCTACGGGAGCAGATGATCCGCAGCCAGCTGCGGTTCATGTCCAAGCGGCATGTGAAGCGCGCCCTACGGGACCTCACCATCGGC |
| droAna3 | scaffold_12903:667658-667806 + | TCCTGATGGCCCTGATGTCCGGCCTGAATTTGGTCTGTCGCGTGGCGATGATTATCAGCAAGACCCTAAGAGAGCAGATGATCCGGAGCCAGTTGAGGTTCATGAAGAAGCGGCATGTCCAGAGGGCGCTGAGGGATCTGACGATCGGG |
| dp4 | chrXL_group1e:10756223-10756371 - | TCCTGATAGCCATCATATCCGGCGTGAATATCCTCTTCCGGCTGGCCATGCTGTCCATCAAGAGTCTGCGCGAGAAGATGATCCGCAGCCAGCTGTCCTTCATGACCAAACGACATGTGCAGCGGGCCCTGCGCGACCTCACCATCGGG |
| droPer1 | super_14:190427-190575 - | TCCTGATAGCCATCATATCCGGCGTGAATATCCTCTTCCGGCTGGCCATGCTGTCCATCAAGAGTCTGCGCGAGAAGATGATCCGCAGCCAGCTGTCCTTCATGACCAAACGACATGTGCAGCGGGCCCTTCGCGACCTCACCATCGGG |
| droWil1 | scaffold_181096:8247011-8247159 - | TGCTGATGGCCATCATGTCGGGCCTCAATCTACTCTGTCGCCTGGCCATGATGCTGAGCAAGAGTGTGCGTGAGCAAATGATTCGCAGTCAATTGCGTTTTATGCCCAAACGGCATATCCAACGAGCTCTCAGGGATCTAACCATTGGC |
| droVir3 | scaffold_12726:998444-998592 - | TGCTGATGGCCTTCATGTCCGGCCTGAACCTGCTCTGCCGTCTGGCCATGATGCTCAGCCGGACGCTGCGTGAGCTGATGATACGCAGCCAATTGCGCTTCATGACCAAGCAGCATGTACAGCGCGTTTTCCGGGATCTAACCATCGGT |
| droMoj3 | scaffold_6473:9166585-9166733 + | TGCTGATGGCCTTCATGTCCGGCCTGAATCTGCTCTGTCGCCTGGCCATGATGCTCAGCCGGACGCTGCGCGAGCTGATGATACGCAGCCAATTGCGCTATATGACCAAACAGCATGTGCAGCACGTCTTCAGGGATCTGACCATCGGC |
| droGri2 | scaffold_14853:5433396-5433544 - | TCCTCATGGCGATCATCGCTGGCCTAAATCTGCTCTGTCGCCTAACCATGATGGTCAGCCGGACGCTGCGCGAACTGATGATTCGCAGCCAGTTGCGATTCATGACCAAAGAGCATGTGCAGCGCATCTTTAGCCATTTAACCATCGGC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:463920-464051 + | TGGAGTGACCAGCACAACACAAGGCCTGCCGCCCAAGAA----------------------------------------------------------------------------------------------------------------------ACGCAAGCCCAGAAGTCCGGCAGTC----------------GAGAA----------------------TCACGAGGGACTGG-G------ACCTTGGGCTTACGGTTCTCAGTTTGGCTTGACATGCATCAGCATCAT |
| droSim1 | chrX_random:776904-777034 + | CGGAGTGACCAGCACATCACAAGGCCTGGTGCCCAAGAA----------------------------------------------------------------------------------------------------------------------ACGCAAGCCCAGGAGTCCGGCAGTC----------------GAGAA----------------------TCACGAGGGACTGGGG------CCT-T-GGCTTACGGTTTTCATTTTGGCTTGACATGCATCAGCATCAT |
| droSec1 | super_10:310837-310968 + | CGGAGTGACCAGCACATCACAAGGCCTGGTGCCCAAGAA----------------------------------------------------------------------------------------------------------------------ACGCAAGCCCAGGAGTCCGGCAGTC----------------GAGAA----------------------TCACGAGGGACTGGG-------GCCTTGGGCTTACGGTTTTCATTTTGGCTTGACATGCATCAGCATCAT |
| droYak2 | chrX:383437-383616 + | TGCAATGCCCACCACAACACAAGGCCTGATGCCCGAGAAT-CGGTTTATTTCCTCCTCT------------------T-------------------------------------------------------------------------------CCGCAGGCCCAGGAGTCCGGCAGTC----------------GAGCAGTCGAGCTGTTCACCCGGTCAGTCCTT-GGTCCTTGGTCCTTGGGCCTTGGGCTTTCGGTTTTCAGTTTGGCTTGACATGCATCAGCATCAT |
| droEre2 | scaffold_4644:409107-409303 + | TGCAATGACCCTCACCACACAAGGCCCGATGCCCGGGAAT-CGGTTTATTTCCTCTTCT------------------T-------------------------------------------------------------------------------CCGCAGGCCCAGGAGTCCGGCAGTCCGACAGTCCAGCAGTCCGGCAGTCGAGTTGTCGAGTAGTCCAGTCATGAGGGGCTGGGGCCTTGGGCCTTGGGCTTACGGTTTTCAGTTTGGCTTGACATGCATCAGCATCAT |
| droAna3 | scaffold_12929:357992-358198 + | TGGAATGACC---ACAGCAGAAGGCCTTCTGCCAA-GACTTGGGTGTAGATATGAGTGTGTGTGGGTGTGGGTGTGTTTT--GGCCAGAATATGGTGGGTGATTGTGCAGGGAGGCGTGGCAGATGGGGG-GGCG-------GAGGATGAAGAAGAAGCAGTAGCAGAGGAG--------------------------------------------------------------------G------CCTTTGGGGTTTCGGTTTTCAGTTTGACTTGACATGCATCAGCATCAT |
| dp4 | chrXL_group1e:196231-196421 + | TGGAATGACC---ACGGCACAAGGCCT--TG-CCAAGACT-TGTTTTATTTTTTGCTGA------------------TTTGGGGGCAGGAACT-GTAGGTGCCT--GCCGCGCGGGGAAGTAGAAGGGAAAGGCGTGGCTGCGAG---GACGCAGGAGGCTT-------------CGCAGGA----------------GAG--------------------------------------AA------CTTTTGGGGTTTCGGTTTTGAGTTTGACTTGACATGCATCAGCATCAT |
| droPer1 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | scaffold_180777:2769923-2769983 + | CAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGATTGACG------CCTTTGGGGTTTCGGTTTTCAGTTTGACTTGACATGCATCAGCATCAT |
| droVir3 | scaffold_12970:10710181-10710231 + | G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------CCTTTGGGGTTTCGGTTTTCAGTTTGACTTGACATGCATCAGCATCAT |
| droMoj3 | scaffold_6473:10704148-10704209 - | GGGG--------------------------------GGCTTGGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------CCTTTGGGGTTTCGGTTTTCAGTTTGACTTGACATGCATCAGCATCAT |
| droGri2 | scaffold_14853:6069294-6069344 - | G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------CCTTTGGGGTTTCGGTTTTCAGTTTGACTTGACATGCATCAGCATCAT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:1267640-1267803 + | AGATATTACC--CAGAAGCGA-----------------------TATC------------------------CAATAGTAGCCAA-CTCTCTCG--CTCTC--T----------A----TGT--GTATGTATGTATCTTG---------------CTATCC---------------ATATA--TGTATATCCATATCAGAGAGCCAGGATTGGTTGAGACCATACG------ATATAACCCGAAACCACACTGG-CC-AGGAATA---------------------------------------------GCAAATCCA |
| droSim1 | wjj76b12.b1:303-467 + | AGATATTACC--CAGAAGCGA-----------------------TATC------------------------CAATAGTAGCCAA-CTCTCTCG--CTCTC--T----------A----TGT--GAATGTATGTATCTTG---------------CTATCC---------------ATATA--TGTATATCCATATCAGAGAGCCAGGATTGGTTGAGACCATACG------ATATAACCCGAAACCATACTGG-CC-AGGAATA---------------------------------------------GCAAATCCA |
| droSec1 | super_10:1091085-1091248 + | AGATATTACC--CAGAAGCAA-----------------------TATC------------------------CAATAGTAGCCAA-CTCTCTCG--CTCTC--T----------A----TGT--GAATGTATGTATCTTG---------------CTATCC---------------ATTTA--TGTATATCCATATCAGAGAGCCAGGATTGGTTGAGACCATACG------ATATAACCCGAAACCATACTGG-CC-AGGAATA---------------------------------------------GCAAATCCA |
| droYak2 | chrX:1175521-1175702 + | AGATATAACC--GAGAAGCAA-----------------------TACC------------------------CAATAGTAGCCAA-CTCTCTCGCTCTCTC--TGCGTCTCTCTA----TGT--GTATGTATGTATTTCG---------------CTATCC---------------ATATA--TGTATATCCATGTCAGAGAGCCAGGATCGGTTGAGACCATACTATATCTATATAACCCGAAACCATACTGG-CC-AGGAATA---------------------------------------------GCAAATCCA |
| droEre2 | scaffold_4644:1251466-1251631 + | AGATATAACC--CAAAAGAAA-----------------------TACC------------------------GAATAGTAGCCAA-CTCTCTCG--CTCTCTCT----------A----TGT--GTATGTATGTATTTCG---------------TTATCC---------------ATATA--TGTATATCCATGTCAGAGAGCCAGGATCGGTTGAGACCATACT------ATATAACCCAAAACCATACTGG-CC-AGGAATA---------------------------------------------GCAAGTCCA |
| droAna3 | scaffold_13117:1856374-1856503 - | --------------------------------------------------------------------------------------CTCTCTCT--CTCTC--TGTGTCTCTCTAAATGCAT--GTATGTATGTGTTGTA---------------TTATCC---------------GTATATATGTATATCCATGTTAGAGAGCCAGGACGGGTTGAGATT----------------GCCCAAGA----ACTGG-CCTAGGAATA---------------------------------------------GCAAAT-CA |
| dp4 | chr2:10126391-10126530 + | GAATAAT--CCATA-AACAAA-----------------------TATC------TA----------------T-GTAGTCA-CAT-CTATCTCT--CTCTC--T----------A----TAT--ATCTCTCTCTCTCTTT---------------CTTTAT---------------TTGTA--CATGTATTTATTTCATGGGTTTAGTTTTGC---AAATGGTATA------AAACATCTCCAAAATACATT------------------------------------------------------------------- |
| droPer1 | super_2:4840479-4840636 - | TAATATATTG--GAGTAGCAA-----------------------TATC------------------------TATTTGTATTCAG-ATTTGTAT--TTATT--T----------A----TGT--GTTTGTGGTGATACAG---------------ATATATA--------------GTATA--TATAGAAATATATTTTAAAATCA---TAGGTACATACAGTATA------TTGTATCCCTATCCAATGCATA-T-----GTGA---------------------------------------------ACGTACTTA |
| droWil1 | scaffold_180700:3267577-3267741 + | AAATATCATA--CCCA-AAAA-----------------------TATA------------------------TACTACTACACAACCTCTCTCT--CTCTC--T----------C----TAT--CTATCTATCTATCTTTGAACATAAAATGTACCTAT--ACTAAAACAAAAACTCTATA--TCTAAATCGTTGTGCT-TACCATTCATTTTCTACTACTATACT------ATATAGGGCGAAAC------------------------------------------------------------------------- |
| droVir3 | scaffold_12855:2148540-2148695 + | ATA----ACC--CAAAAGATA-----------------------CCTC------------------------AATTTGCATATAT-ATCTATGT--CTATA--T----------A----GAT--ATATACATACATATAT---------------ATATAC---------------ATATA--TATATATAAATATATGTGTGCGTGCATTA----TCGTCTTGTG------ACTAGGTCCAGAACTTTACAGG-TG-CGCAGTG---------------------------------------------TCGAAATCA |
| droMoj3 | scaffold_6496:26031347-26031515 + | TGATGCCACC--CAGC------------------------------CC------------------------CCACCGCCTCCTG-CTCCCTCC--CTCTC--TATGTTTATATG----TGT--ATATGTGTGT---------------------GTGTCT---------------GTGTG--TTTGTGTCCCTTC--------------------GATTGGCG------------------------TGCCTGAAT-GGCTGTGAAAACACAGCCAGTTGCAGCTGTATCCACAATCATTATCACAAAAGCAAACTAC |
| droGri2 | scaffold_14853:6570585-6570746 + | AAAAACAAAA--AACAAACGAAGTAACAGCCCAAGCCGACAATGGCTGAATATATATGTTATGTATTTGTATT-ATTGTC------------GT--GTATA--T----------A----TATCTATATATGTATATTACA---------------CTAT---------------------------------------------------------ATACTATATG-----TATATATATATAGACAATGTCTG-AT-GGCTATG---------------------------------------------CCAAAGCCA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:3671399-3671553 + | TGTGTTTGGTTGTTTTTCCTTTCTTTTC------------TCTCCGTCTCTCTCTTTC------------CCTCTCTCTGTT-TACATTGAGCTG-------TTTTGTCCGTGCAC----------GTGCTA---G---------------------ACGATGTAGAGAGTGAGG--GAGA---------------GAGCG---------------------AATAGAATAACAGCTCATTGTGCTGAG-CGCCCAGCC-T |
| droSim1 | chrX:2692027-2692181 + | TATGTTTGGTTGTTTTTCCTTTCTTTTC------------TCTCCGTCTCTCTCTTTC------------CCTCTCTCTGTT-TACATTGAGCTG-------TTTTGTCCGTGCAC----------GTGCTA---G---------------------ACGATGTAGAGAGTGAGG--GAGA---------------GAGCG---------------------AATACAATAACAGCTCATTGTGCTGAG-CGCCCAGCC-T |
| droSec1 | super_13710:747-901 + | TATGTTTGGTTGTTTTTCCTTTCTTTTC------------TTTCCGTCTCTCTCTTTC------------CCTCTCTCTGTT-TACATTGAGCTG-------TTTTGTCCGTGCAC----------GTGCTA---G---------------------ACGATGTAGAGAGTGAGG--GAGA---------------GAGCG---------------------AATACAATAACAGCTCATTGTGCTGAG-CGTCCAGCC-T |
| droYak2 | chrX:4740636-4740793 - | TGTGCTTGGTTGTTTTTCCTTTCTTTTC------------TCTCCGCCTCTCTCTTTC------------CCTCTCTCTGTT-TACATTAAGCGG-------TTTTGCCCGTGCAC----------GTGCTA---G---------------------ACGATATAGAAAGAGAGAGGGAGA---------------GAGCG--------------AA------TAACAATAACAGCTCGTTTTGCTGAG-CGCCCAGCC-T |
| droEre2 | scaffold_4690:1061104-1061256 + | TGTGTTTGGTTGTTTTTCCTTTCTTTTC------------TCTCCGTCT--CTCATTC------------CCTCTCTCTGTT-TACATTAAGCGG-------TTTTGCCTCTGCAC----------GTGCTA---G---------------------ACGGTATAGAGAGAGAGG--GAGA---------------GAGCG---------------------ATTACAATAACAGCTCATTGTGCTGAG-CGCCCAGCC-T |
| droAna3 | scaffold_13337:5571517-5571673 - | TGTGTTTTTGTTTTTGTTGTCTCTGTTT------------TCTTCGCCTTTTTTTTC-------------TC-ATTTTTG-------TGGAGCTTTGCATGCCCGGCTGCAGGAGT----------GTTAGT---GAGTGGTTTGACTTGTTTTGCGGCAGCAGGCAGCACACGC--GCTG---------------CTGT-------------------------------------CGCCGTCGCCGC-TGTCTAGC--- |
| dp4 | Unknown_group_658:20580-20732 - | TACATTTTTCCACTTGCCCACACTTTTCGCTGCGCT----GCTCTCTCGCTCTCTCTCTCTCTCATGCTCTC-------ACT-CTCAGAAAGCTG-------TGCAAT------------------GCACCATGCG---------------------ACGACTGAAAGCATGAGA--GTGA---------------G--CC--------------AG---CTTTCAGTGTGGCAGTTTTTTTCGTTG-------------- |
| droPer1 | super_23:1560592-1560751 - | GTTTCTCTGCCTCTCCCTCTC-------------------------TCCCTCTCTCTCTCTCTCGCTGTCTTCCTCTTTCTC-AACTATGTGTGG-------CCATGTGTGTGTGT----------GTGTGT---G---------------------TGTGGGTTGTATCTGTGT--GTGA---------------GAGCG-------------AAGCG---CAGACAATTAGT-TTTATTATGCTTTGTTGCCGAGCTTC |
| droWil1 | scaffold_181096:11652056-11652210 + | TCTGTTTGTGAGGGTCCCTCTCTTTTAC------------TCTCTGTCGCTCTCTCTC------------TCTCTCGCGCTG-CACAAAAAAATTAG-----TCATACC-AAAAACAAAATACAGATTGCAA---A---------------------GCAATAGAGAGAGAGAGG--GAGA---------------GAGAG---------------------AGA------GTAAGTGAGTGTG-AGAG-CGCCCA----- |
| droVir3 | scaffold_12855:8711965-8712121 + | TCTCTTTCTTTATTTCTCTGCTT--TTCTCTGTCTCTCTTTATCTGTATCTCTCTCTC------------TTTCTCTCTATTTTCTATTGCTCTG-------TTATGTC-AAACATTTGCTGCATACTTTCA---G---------------------GCGATATTAAAAGCGTGC--AAGA---------------TTTTC---------------------ATTTGTATAACTGCGTATT-------------------- |
| droMoj3 | scaffold_6496:4311996-4312145 - | TGTCTCTC--TATTTCTCTCTCTCTCTC------------TCTCTCTCTCTCTCTCTC------------TCTCTCTCTGCC-TGCCTTCA---C-------TTTTATACAAA---------------AATA---A---------------------TGGCCATCAAAATTAATA--AAAACGTAATCAGAGCGAATGACTACAGAGGAAAACGAAAAG--------TATAAAAG-------------------------C |
| droGri2 | scaffold_15203:9842081-9842230 + | TCCCTTCTCTCTCTC-------------------------TCTCTCTCGCTCTCTCTC------------TC------TCTC-TCTAT----TTG-------TCTCTTCCGCATA-----------GCGCAA---G---------------------TCGACGTCGGGGCTGACG--GGCA---------------GCGTTTCACAGGAGAATCGGGTGACTATCACCCTGATTGC-TGTTGTGCTG-C-TGTTCATCG-T |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:5684770-5684909 + | CACCCACTGCGAATTGCTGTAGGAAAT-------TTTTT-GGGGTACTTCTGGTTTCATAACGCAGAGAATCATC-----------AGCGTGAAGGAATGATTCTCTGCGGGCTGGAACCAGAAGTCCTGCAAATGTTCTTTTACGGATTTTAA---CCAGG |
| droSim1 | chrX:4425250-4425396 + | CACCCACTGCGAATTGCTATAGGAAATGATGGAGTTTTT-GGGGTACTTCTGGTTTCATACTGCAGAGAATCTTC-----------AGCGTGCAGTAATGATTTCCTGCGGGCTGCAACCAGAAGTCCTGCAGATGCTCTTTTACGGATTTTAA---CCAGG |
| droSec1 | super_4:1079282-1079434 - | CACCCACTGCGAATTGCTATAGGAAATGATGGAGTTTTT-GGGGTACTTCTGGTTTCATAACTCAGAGAATCTTCATGATTTCTTAATCA-----TAATGATTTCCTGCGGGCTGCAACCAGAAGTCCTGCAGATGCTCTTTTACGGATTTTAA---CCAGG |
| droYak2 | chrX:2788911-2789034 - | CACCCACTGCGAAATGCTATAGGACATGATGGAGCTTCTGGAGGTACTTCTGGTTTTATAATGCAGAGAATCGTA-----------ATCGTGAAGGAATGATTCTATGCGTACTGAAATCGGGAGTCCTGCAGAT--------------------------- |
| droEre2 | scaffold_4690:3033374-3033523 + | CACCCACTGCGAAATGCTATAGGAAACGATGGGGTTTCT-GGGGTACTTCTGGTTTTATAACGCACGGAATCTGA-----------ATCGTGAATGAATGATTCCTTGCGGACTGGAACCAGAAGTCCTGCAGAGGCTTCTTGAATGATTTGAAGTTTCGGA |
| droAna3 | scaffold_13117:1117754-1117783 + | CACCCACTGCGACGTACTTTAGAGAGTTGT------------------------------------------------------------------------------------------------------------------------------------ |
| dp4 | chr3:13862643-13862665 + | CACCAGCTGTGGGCTGCTTTAGG------------------------------------------------------------------------------------------------------------------------------------------- |
| droPer1 | super_4:1457976-1457998 - | CACCAACTGTGGGCTGCTTTAGG------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | scaffold_181096:7345062-7345085 - | AACCCACTGTGATGTCCTGTAAAA------------------------------------------------------------------------------------------------------------------------------------------ |
| droVir3 | scaffold_13324:2924689-2924720 + | CACGGCCTGTGGTGTGCTATAAATTTT------------------------------------------------------------------------------ATGTG---------------------------------------------------- |
| droMoj3 | scaffold_6496:13805954-13805976 - | CACCGACTGCGGCGTCCTCTGAG------------------------------------------------------------------------------------------------------------------------------------------- |
| droGri2 | scaffold_15112:3786307-3786359 + | CACCAGCTGCGGCGTGCTATAAATTC--------TTTTC-GTTGTATTTCTGGGTGTTCAAC---------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:8859818-8859960 + | TCGCCATGCTTCGACAATT----------------------------TT---------------------------TGAATGGTCCTTTT----------CATGCCCAAGG---------------------CGAATAAATAT------------GTATTTATGTATATTTTTTTATATGGTACGTATTTATTTGTCTGCAAATGGCTGCCAAG-----------------------------------GAGT---------------------GCTACATAATCAATTTGTTTG-TT |
| droSim1 | chrX:7057967-7058102 + | TCGCCATGCTTCGACAATT----------------------------TT---------------------------TGAATGGTCCTTTT----------CATGCCCAAGG---------------------CGAATAAATAT------------GTATTTATGTATATATATTTATA-------TACGCATTTGTCTGCAAATGGCTGCCATG-----------------------------------GAGT---------------------GCTACATAATCAATTTGTTTG-TT |
| droSec1 | super_34:222375-222488 + | TCGCCATGCTTCGACAATT----------------------------TT---------------------------TGAATGGTCCTTTT----------CATGCCCAAGG---------------------CGAATAAATAT------------GTATTTATGTTTATATATT-----------------------------TGGCTGCCATG-----------------------------------GAGT---------------------GCTACATAATCAATTTGTTTG-TT |
| droYak2 | chrX:12451967-12452096 - | TTGCCATGCTTGGACAATT----------------------------TT---------------------------TGAATGGTCCTTTT----------CATGCCCAAGG---------------------CGAATAAATAT------------GTATTTATGTGTAGATA-------------TATGTATTTGTCTGAAAATGGCTGCCAAG-----------------------------------GAGT---------------------GCTACATAATCAATTTGCTTA-TT |
| droEre2 | scaffold_4690:6251913-6252052 - | TTGCCATGCTTGGACAATT----------------------------TT---------------------------TGAATGGTCCTTTC----------CATCCCCAAGG---------------------CGAATAAATATGTTTGTGTGTACGAGTATATATTTATA---------------TATGTATCGGTCTGCAAATGGCTGCCAAT-----------------------------------GAGT---------------------GCTTCAAAATCAAATTGTTTG-TT |
| droAna3 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| dp4 | chrXL_group1e:8134181-8134346 + | TTTCCATGCTTGGACAATT---------------------------CTT---------------------------TGAACGGTCGTCCCT----TTTTGCCAGCCCAAGGGGGGAGGGATGGGGGGGGGGGGGAATAAATAT--------------ATCAACAA----AAA-------------TAC--------------------------TCGTAAGGCGAATAATGGCAACGTCTGGGGTGAGC----GATTGAGAGTTGTATCTGGAAGCTATATAATC------------- |
| droPer1 | super_13:433852-434017 - | TTTCCATGCTTGGACAATT---------------------------CCT---------------------------TGAACGGTCGTCCCGCCCGGTTTGCCAGCCCAAGGGGC----GGCGGGGGGAGGGGGGAATAAGTAT--------------ATCAACAA----AAA-------------TAC--------------------------TCGTAAGGCGAATAATGGCAACGCCTGGGGTGAGC----GATTGAGAGTTGTATCTGGAAGCTATATAATC------------- |
| droWil1 | scaffold_181150:832777-832852 + | ATGTCTTCCATTCCCTATT----------------------------TG---------------------------CGTATTTTCTT------------------TCAGTA---------------------TAAATGAATAT------------GTATGAGTCG----AAA-------------TAC--------------------------CTATA------------------------------------------------------------------------AATG-AT |
| droVir3 | scaffold_12726:2732407-2732514 + | TGGA------TCAACAAAT----------------------------GCCGCACATTTCTTTCTTGCTTTCGTTCACAATTTCTCTT------------------GTAATA---------------------TAATCAAT-TT------TT----ATTCAATTC-------------------------------------------------------------------------------------ATAC---------------------GATTCACATTCAATTCGTTTGACT |
| droMoj3 | scaffold_6500:9117978-9118115 - | CA----AGCTGCGACTATGTAATTAAAATTGTATGTATCAGCGGGTC-T-----------------------AT----------------------------TGCTATGTG---------------------TGTATAGGTGT------------GTGTGTGTGTGTATG---------------TGTGTGTATGTGTGCATATACAAAGCCAT-----------------------------------AATA---------------------GCATAAAACTCGATAAGCCTG-GC |
| droGri2 | scaffold_15110:597989-598133 + | TCGCCATATTTCGTTGAAT---------------------------T-C-----------------------TT----CGCCATATATCG----------TATGATTT---------------------------ATATATAT------ATATATAAATATATATATATATTTCGGCTCCAAATATTTTTTATATTTTGCAAAGACTTGCTGTG-----------------------------------G--TTTTTCATAAGTGAGTTTGAAT-----------------ATTG-TA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:16500125-16500242 + | GTATTCGCAGTAC-AAGCACAAGGTGATCGATGGGAGATGA----GCGCCTGA--TGTGATGATGAAGTAGATCGATCACACCAC--ACACTCACTCA--------------------------CCCAGGTTTCATCCATACAAATGTGTTTG |
| droSim1 | chrX_random:4339044-4339160 + | GTATTCGCAATAC-AAGCACAAGGTGATCGATGGGAGCTGA----GCGCCTGA--TGTGATGATGAAGTAGATCGATCACACCAC--ACACTCACTCA--------------------------CCCA-GTTTCATCCATGCAAATGTGTTTG |
| droSec1 | super_17:323461-323577 + | GTATTCGCAATAC-AAGCACAAGGTGATCGATGGGAGCTGA----GCGCCTGA--TGTGATGATGAAGTAGATCGATCACACCAC--ACACTCACTCA--------------------------CCCA-GTTTCATCCATGCAAATGTGTTTG |
| droYak2 | chrX:10606276-10606397 + | GAATTTAGAATAA-AAACAAAAGGTGATCGATGGGAGCTGACCTTGAGCCTGAGCTGAGATGATGAAGTAGATCGATCACAC-AC--TCACTCACTCA--------------------------CTCA-GTTTCATCCATGCAAATTTGTTTG |
| droEre2 | scaffold_4690:6858711-6858812 + | CCC-----AATAA-AACCAAAAGGTGATCGATGGGAGCTGA----G--CCTGA--AGTGATGATGAAGTAAATCGATCACA-------CACTCACT------------------------------CA-GATTCATCCATGCAAATTTGTTTG |
| droAna3 | scaffold_13337:17013621-17013746 + | GAAATCTCAGCAGCAAGCTCAG-CGGATCG---GGTGTTGG----A--GGTGG--TCTGCCATTGACGAAGAGCAACAGCACCAA--TTCCTTCC---AGGAGCATAGCGCTCCCAAGC----------GTCGTCCCAGTATGGGTGCCTTGG |
| dp4 | chrXL_group1a:8134511-8134553 - | ACT------------------------------------------------------------------------------CCAC--ACACACACACA--------------------------CACA---GACAGACATATAAAGGA-CATG |
| droPer1 | super_5:779941-779973 + | ACACTCGCACTCC-C---ACAAGAAGAGCAGCAGTAG-------------------------------------------------------------------------------------------------------------------- |
| droWil1 | scaffold_180698:6476640-6476654 + | ATTT------------------------------------------------------------------------------------------------------------------------------------------GAATGTGTGTG |
| droVir3 | scaffold_13042:4246856-4246902 - | CAC-----------------------------------------------------------------------------AC-ACACACACACACATG--------------------------TACAGCTTTCACTCATGCATATTTGTT-- |
| droMoj3 | scaffold_6500:26586811-26586907 + | GCATTTGCACTG------------------CTCGAAAATGA----GCAATTGC--AAAGATCATTG-----------CACA---A--TACATTGC---AGAGAAATACTGCACAAAATAATTTAGTTA-ATTT------------TAAGTTGA |
| droGri2 | scaffold_15245:5234538-5234618 - | GCAAAATGAACAC-----AAAAACTGTTG------------------------------------------------CATACCAC--ACACTAACTG--T--AAATATCA--------------CATTTTTATTATTCTTATAATTATTAATA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:19452387-19452544 + | GTTTCCAGGACATTGAGCTGTGTGACAACAAACTTGTCGGCACTGGAGTACTAAATA--TATTGCACATGTTCATGC----------ATGTTCAACATATTTAGCACTCAAGTACCGAA--------------------------AAATGAACAACGAAACGAAAAATAACACG-AA---CATCATGCTGCCCATTATAT |
| droSim1 | chrX:15018266-15018398 + | ACTTTGTCGG------------------------------CACTGGAGTGCTAAATA--TATTGCTCATGTTC--------TCATACATGTACAACGTATTTAGCACACGAGTACTGAA--------------------------AAATTAACAACGAAACGGTTG--AACTCGGAAGTGCAATATTGAGTTTTTGATTT |
| droSec1 | super_8:1734644-1734797 + | GTTTCCAGGACATCGAGCTGTGTGACGG------------CACTAGAGTACTAAATA--TATTGCACATGTTCATACATGTTCATACATGTAAAACATATTTAGCACTCAAGTACCGAA--------------------------AAATGAACATCGAAACGGGAG--AACACG-AG---CATCTTGCTACCCATTATAT |
| droYak2 | chrX:11886103-11886223 - | GTTTCCGGGACTTCGTACTGTATGACAGA---------------------CTATATATACAA-------------------TACGAAGCCTCTGAAATTTTCTGCGCTCAAGTACCAAAAACTACCAGCA-------------------AACCAACGAAACTGGAG--AACTACGGA---CGGCA--------------- |
| droEre2 | scaffold_4690:9688657-9688714 + | GTTTCAGGGACTTCGCACTGTATGACAA-------------------------------------------------------------ACTATAAATTTTGTGCACTCAAGTACCAAA--------------------------------------------------------------------------------- |
| droAna3 | scaffold_13417:2468043-2468174 - | GTTTCCGGGATCTCGTACTGTATGAAGTT---------------------TTCTATATACAA-------------------TTCGAAAACTCAGAAACTTCCTGCCGTGAGCTACCATTGATCAACGGCTGAGTATGCGACCGGAAAGGGGACGCGAATGCGAGGACTAA----------------------------AG |
| dp4 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droPer1 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droGri2 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:5899582-5899719 - | CATAGATATGGC--TAACTATAGCGTTGTCTCTTGCGCAAATTGCATTTTC---------TCTCTGTTAACATGTACACATAATTCCTGTAACAAAGGGCATTT-----GCAA--TGTGTGAGTCAGCAAA--CCGCATCCGCTTCCCGGC-CCCTCCT |
| droSim1 | chr2R:4528976-4529111 - | CGAGGAAATAGC--TAACTATAGCGTTCTCTCTTGCGCAAATTGCATTTTC---------TCTCTGTAAACATGTACACATAATTCCTGTAACAAAGGGCATTT-----GCAA--TGTGTGAGTCAGCAAA--CCGCATCCGCCCC-C--CGCCCTCCC |
| droSec1 | super_1:3512309-3512447 - | CGAGGAAATATCTTTAACTATAGCGTTCTCTCTTGCGCAAATTGCATTTCC---------TCTCTGTAAACATGTACACATAATTCCTGTAACAAAGGGCATTT-----GCAA--TGTGTGAGTCAGCAAA--CCGCATCCGCCCCTC--TGCCCTCCT |
| droYak2 | chr2L:18527608-18527740 - | CGGGAAACTCG-----ACTATAGCGTTCTCTCTTGTTTAAATTGTATTTTC---------TCTCTGTTAAAATGTACACATAATTCCTATTTCAAAGGGCTTTG-----GAAA--AGTGTGAGTCAGCAAA--CCGCATCCGCCCG-A--TTTCTTCCT |
| droEre2 | scaffold_4929:8470755-8470887 + | CGGTAAATTCG-----ACTAAAGCGTTCTCTCTTGCTTAAATTGTATTTTC---------TCTCTGTTAACATGTATACATATTTCCTGTAACAAAGGCCATTG-----GAAA--TGTGTGAGTCAGCAAA--CCGCATCCGCCCC-C--TTTCTTCCT |
| droAna3 | scaffold_13266:17255662-17255760 + | TGCTATA-TATCTGTACCTATA----------------------------------------------TGTATGTACGGGTG-TTTATGTAACAAAAGGCATTTTGGTGGAAA--TGCGTGAGTCAGCGGA--CCGCATTAT-------GC-CCTTTGT |
| dp4 | chr3:6114287-6114365 - | C-------------------------------------------------------------TCCATCCATATGTAC--------TTTATAACAAAGGGCATTT-----GGAATATGTGTGAGTCAGCACATGCCGCATCCGTG-----GC-CCCTTCC |
| droPer1 | super_2:6317550-6317666 - | TTTTGACA--GC-----TTTAAGCGTTCC----------------ATTTCCATTCACGAACCTCCATCCATATGTAC--------TTTATAACAAAGGGCATTT-----GGAATATGTGTGAGTCAGCACATGCCGCATCCGTG-----GC-CCCTTCC |
| droWil1 | scaffold_180700:5327370-5327375 - | CCC---------------------------------------------------------------------------------------------------------------------------------------------------------TTT |
| droVir3 | scaffold_12875:417241-417243 - | CCT------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| droMoj3 | scaffold_6496:5073155-5073192 + | GAGACACTTA-------------------------------------------------------------------------------------ACTCCGTTC-----ACCT--TGTGCGA----------------------------C-TCCCTAA |
| droGri2 | Unknown | --------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:11545623-11545808 - | AAACTGCATTCAAGT-----------TTTTCC-T-----------------------CAGAGC-----C-GCGACT----GCTGG---CGTGTTA-TTG------------------TTGC----TGTTGCAGCTAGCTGCCACGGT-------TTGTTGCTTCACTGATTACGCGCAATGCAGCAACAGCAGCA---------------GCAGC------A------------------------------------------------------------------GAAGCAACAGCAACT-AACTGCAGAGGAGCAATAGCAGCT-GAGAGTTCAGTTGCGAAAC-CGGCG |
| droSim1 | chr3L:10929570-10929746 - | AAACTGCATTCAAGT-----------TTTTCC-T-----------------------CAGAGC-----C-GCGACT----GCTGG---CGTGTTA-TTG------------------TTGC----TGTTGCAGCTAGCTGCCACGGT-------TTGTTGCTTCACTGATTACGCGCAATGCAGCAGCAGCAG------------------------------------------------------------------------------------------------AAGCAACAGCAACT-AACTGCAGAGGAGCAATAGCAGCT-GAGAGTTCAGTTGCGAAAC-CGGCG |
| droSec1 | super_0:3745423-3745605 - | AAACTGCATTCGAGT-----------TTTTCC-T-----------------------CAGAGC-----C-GCGACT----GCTGG---CGTGTTA-TTG------------------TTGC----TGTTGCAGCTAGCTGCCACGGT-------TTGTTGCTTCACTGATTACGCGCAATGCAGCAGCAGCAGCA---------------GCA---------------------------------------------------------------------------GAAGCAACAGCAACT-AACTGCAGAGGAGCAATAGCAGCT-GAGAGTTCAGTTGCGAAAC-CGGCG |
| droYak2 | chr3L:11579958-11580167 - | AAACTGCATTCAAGT-----------TTTTCC-T-----------------------CAGAGC-----C-GCGACT----GCTGG---CGTGTTA-TTG------------------TTGC----TGTTGCAGCTAGCTGCCACGGT-------TTGTTGCTTCACTGATTACGCGCAATGCAGCAGCAGCAGAA---------------GCAGC---AGCAGCAGC----------------------------------AGTAGAAA------TAGCAGCA-----GTAGCAACAGCAACT-AACTGCAGAGGAGCAATAGCAGCT-GAGAGTTCAGTTGCGAAAC-CGGCG |
| droEre2 | scaffold_4784:11545792-11545968 - | A-ACTGCATTCAAGT-----------TTTTCC-T-----------------------CAGAGC-----C-GCGACT----GCTGG---CGTGTTA-TTG------------------TTGC----TGTTGCAGCTAGCTGCCACGGT-------TTGTTGCTTCACTGATTACGCGCAATGCAGCAGCAGCAG------------------------------------------------------------------------------------------------AAGCAACAGCAACTGAACTGCAGAGGAGCAATAGCAGCT-GAGAGTTCAGTTGCGAAAC-CGGCG |
| droAna3 | scaffold_13337:5830221-5830437 - | AAACTGCATTCAAGTTTTGTTTTTGTTATTTTTT-----------------------CTTTGC--TTCT-GCAACTATT-GCTGGTTAGCTGCTAGTTG------------------CTGC----TGCTGCTGCT-GCTGCCACGGT-------TTGTTGCTTCACTGATTACGCGCAATGCAGCAGTAGCAGTA---------------GCAGT---GGCA----------------------------------------------------GAG---GAGACAGAGGAGCCACTGCAAC--AACTGCAACAA---AACAGCAGCT-GAGAGTTCAGTTGCGAAAC-CGGCG |
| dp4 | chrXR_group6:10126891-10127089 + | AAACGGCATACAAGT-----------TTTTCC-TCGCCAAACACAAAGCGTTTTAGCCAGAGCTCTTCT-GCAACTATT-GCTGG-------TTG-TAG------------------TTGT----AGTT-------GCTGCCACGGT-------TTGTTGCTTCACTGATTACGCGCAATGCAGCAGCGGTGGCA---------------GCGGT---GGCA----------------------------------------------------GCG---GTGGCAGCGG-----TGGCA------------------GACGGCAGCCCCCGAGTTCAGTTGCAAAAC-CGGCG |
| droPer1 | super_4:4953737-4953917 + | TTTC-GTTTTC--GT-----------TTTCATTT--------------------------CGC-----T-GT--AA----ACAAG---C--GATT-TTG------------------TTGC----TCTTTCTGCTCGTAATTGAG-A-------TAAATGCATTTT---AAATGCGCAAC--CGCAGCTGCA------------------GCAGCAGCAGCA----------------------------------------------------GAGGCAGCA-----GTTGCAACAGCAGCT-AGCTTCAACT----GGTTGCAGTT-GCGTATGCAGATGCGATGCAAGGCG |
| droWil1 | scaffold_180698:2057599-2057768 - | ACACTGCAGACAAGTTTTAAATGCCTTTTTTT-T-----------------------CGTAGC-------------------TCT---CTTGTTG-TTGTTGTTGCTAA-GT--------C----TTCTGCAACTA-TTGCCACGGT-------TTGTTGCTTCACTGATTACGCGCAATGCAGCAGCAGCAGCG---------------GCAG---------------------------------------------------------------------------------CAGCA------------------AGCGGCAGCT-TCGAGTTCAGTTGCAAAAC-CGGCG |
| droVir3 | scaffold_12855:885802-885977 - | AGGATATGGGCGATT-----------GTCTTA-T-----------------------CAGTGG-----TGGTGCCG----GACCA---GCTGTTA-GTG------------------CCGT----TGCTGATGCCAGCGGCAACCTT-------TTGCTCGATCAT-CATCACCATCATC---------ATCAT--CAACAACAGCAGCAGCAGC------A----------------------------------------------------G--------------CAGCAGCAGCAACA-ACAACAACAGCAGCAACAGCAGCA-GCTACTGCAG--------------- |
| droMoj3 | scaffold_6496:11355914-11356095 - | AAACGAAATGAAACT-----------TTGTGC-G-----------------------CATAG--------GCAACCAACAGC-GG-------CGG-CAG------------------CAGC----AGCAGCAG------------------------------------------------------------------------------CAGC---AGCAGCAGCGCCAGCATCGCTGAGACTTTGACGCGTTGGCAAAAGAAGCAGCAGCAG------CA-----GCAGCAACAGCAAC--AACAGCC--GCAGCAGCAGCAGCA-GCGACGGCAGCAGCAGAAA-CGTCG |
| droGri2 | scaffold_15110:4649694-4649883 + | CAAT----------T-----------TTCTCA-T-----------------------CAGTTT-----C-T-------------------TGCCG-ATGATGAAGCAAATGTCATCGCTGCAGAATGTTGCATTTCGC-GCCAAGATGGGTGAGCTGCTGCTGC---------ACACAATGCAACAATCACAAATGCAACAACAGCAGCAACAGC------A----------------------------------------------------GCAGCAGCA-----GCAACAACAACA--------GC--AACAACAACAGGAGCC-G---ATGCAGCAGCA------ACCG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:17624220-17624408 - | TATATATATGTTTTTGTATGGATTTTTCGGCGTGGCGGTAA------------ATTGAATGATGAGTGG-GAGG--ATGTCGCTGCCATTG----------TTTGG---TTGATA--------------------------------------AGGGAGCCTGGCGCACTATTACCTGGCTCTCTGAA-------------------------------------------A-CGAGAGC--------CCACCTGTCA--------ATCAATACCACCCCG-------CCGA--TGCGACATCATCATAATAATCATCGCCTTT |
| droSim1 | chr3R:17429869-17430050 - | TGTTTTTG--------TATGGATTTTTCGGCGTGGCGGTAA------------ATTGAATGATGAGTGG-GAGG--ATGTCGCAGCCATTG----------TTTGG---TTGATA--------------------------------------AGGGAGCCTGGCGCACTATTACCTGGCTCTCTGAA-------------------------------------------A-CGAGAGC--------CCACCTGTAA--------ATCAATACCACCCCG-------CCGA--AGCGACATCATCATAATAATCATCGCCTGC |
| droSec1 | super_0:17996591-17996767 - | TATATATATGTTTTTATATGGATTTTTCGGCGTGGCGGTAA------------ATTGAATGATGAGTGG-GAGG--ATGTCGCAGCCATTG----------TTTGG---TTGATA--------------------------------------AGGAAGCCTGGCGCACTATTACCTGGCTCTCTGAA-------------------------------------------A-CGAGAGC--------CCACCTGTCA--------ATCAATACCACCCCG-------CCGA--AGCGACA------------TCATCGCCTTT |
| droYak2 | chr3R:18444204-18444378 - | G---------------TATGGATTTTTCGGCGTGGCGGTAA------------ATTGAATGATGAGTGG-GAGG--ATGTCGCAGCCATTG----------TTTGG---CTGATA--------------------------------------AGGGAGCCTGGCGCACTATTACCTGGCCCTCTGAA-------------------------------------------A-CGAGAGC--------CCACCTGTCA--------ATCAATACCACCCCG-------CCGA--ACCGACATCATCATAATAATCATCGCCAGC |
| droEre2 | scaffold_4820:10462895-10463063 + | TGTAT--------------GAATTTTTCGGCGTGGCGGTAA------------ATTGAATGATGAGTGG-GAGG--ATGTCGCAGCCATTG----------TTTGG---CTGATA--------------------------------------AGGGAGCCTGGCGCACTATTACCTGGCCCTGTGAA-------------------------------------------A-CGAGAGC--------CCACCTGTCA--------ATCAATACCACCCCG-------CCGA--ACCGACATCATCATAGTAATCAT------- |
| droAna3 | scaffold_13417:705028-705198 + | TGTATATGTGTGGGTGTAGAGGTGTGT--------AGGTGT------------GCAGGTGTACGGTTGT-GTGT--GTGTGGCATTCGTTGCT-ACTTATGTTTAA-GCTTCGTA--------------------------------------TTTAAGCTTTTTGCACGATTTCCT----CTAACAA-------------------------------------------A-TGGATTT--------TCACTTGTT------------------GCCCAGCCAG---ACG---AACGAAGCCATCACAAAAAT---------- |
| dp4 | chr4_group3:1192892-1193069 - | TATATGGCCTATCCAGCAGGAATTTATCCAGCGGATGGTAG------------CTAGAGATGC-AGTTG-GAGG--GGG---GCACCATAG----------TTTGG---AGTAGC--------------------------------------CAAA---------------TGCCAGGCGATAAGGC-------------------------------ATGAAAAATACAA-CTAATAA--------ACATAAACCAGTCTTCTTTTAAAA--------G-------CTGC------TCATCATCATCATCATCATGATCATC |
| droPer1 | super_7:2291330-2291534 - | CATAAAAGGGTCTGAGTATCTGAGCGT----C------------------------------TGGGTGG-AACC--TCTGTGCTGCTAATG----------TT-AG---CTGATCCCTCTCCTCCCTCCCACTCGGTCCCTGCCCCCGCTCCCTTGGTGGCTGTTGCACTTTCCCCCGGGGCTCTGGA------------GTGTGCACACTTTTGGCA---------TAATA-CAACAAAATTGATTTG----------------------------------------------CAGCATGCATCATTATCAACATCGTCGTT |
| droWil1 | scaffold_181089:335812-335995 + | TTTTTTGAAATGTTTGTAAATGTGTGT----G----TGTTT------------GTGTGTGAAGAAGAA-TGTGTGTATGTGCTGACTAG--TTCAATAATG----C---C--------------------------------------------CAGAGAATGTTACAAGTTTAATGGAAGTTTTCAA-------------------------------------------ATAGAAAAG--------CTAAAAGGAA--------TTTAATTTTAGACAT-------CAGTTTCGAAGCATCGGCATCACAATCATCCCCATT |
| droVir3 | scaffold_12963:15197471-15197651 + | TATATATATAGATATATATATATATATATGCTGGGT----------------------TATATGA--------------------CTTTTG----------GG-TG---CTGATAAGAGGCG----TTCAGCTCAGTGC---------------CAGAGCCCAGCGGCTAATTGACAGCCCCACGGG-----------------CCATGCGGTTA---------AATTAAAA-CGAAAAA--------TCATTTGCCA--------GCA-GCAACAGC-AG----CAGCAGC--AGCGGCAGCAGC-----------------A |
| droMoj3 | scaffold_6496:7093711-7093898 - | TAGCAACTCGTTTCTGTTGCTGTATGT----GTAGCTGTAGCTGTATCTGTAGCTGTATCTGTGGCTG-TATCTGTATCTGGCAGCTGG----CAGCAGTA----G---C--------------------------------------------TGGTAGCTGCTGCTGGCTC--------TGTTGCT------GCCAGAGTATCTGTATCTGTGGCGCGTCAT-----------------------------TGT------------------------T-------GTGC--GTTGCCGTTGCCATCGTAACCAACGCCGTC |
| droGri2 | scaffold_15126:1496468-1496644 - | TACATCCACATCGCTGCTTCGGCTTAT----GTTGTGGTAA------------GTCATTAGAT--GCAG-ATGA--TTGGCGTCATCATCG----------CCTGCT--TCCACA--------------------------------------TCATAGTCAAGGGTATTCTTTTCTGCCGTCTC--AATGAGCGCTAGCG--------CCGATGAGATATCAA-----------------------------CGA------------------------G-------GTGC------TCTTCATCATCATCATCATCGTCATC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:10741869-10742002 + | CATGTTTAGATCGGA--CCCAAAGGTGGGCGAC--AAG---GGCTGGGAGCAGC-----AGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCG----------------TGG---GTTGCTCTTGCTCC-------------------TGACCCTCCTCTTCCT------------------------CCGCTTCATCCT----------C-C---TCCGCAT |
| droSim1 | chr2L:10541288-10541421 + | CATGTTTAGATCGGA--CCCAAAGGTGGGCGAC--AAG---GGATGGGAGCAGC-----AGTTGCTGGCGGTATTCTGAAGTTTCTTTTTCG----------------TGG---GCAGCTCTCGCTCC-------------------TGACCCTCCTCTTCCT------------------------CCGCTTCGTCTT----------C-C---CCCGCAT |
| droSec1 | super_3:6159513-6159646 + | CATGTTTAGATCGGA--CCCAAAGGTGGGCGAC--AAG---GGATGGGAGCAGC-----AGTTGCTGGCGGTATTCTGAAGTTGCTTTTTCG----------------TGG---GCAGCTCTCGCTCC-------------------TGACCCTCCTCTTCCT------------------------CCGCTTCGTCTT----------C-C---CCCGCAT |
| droYak2 | chr2L:7146365-7146495 + | CATGTTCAAATCGGA--GCCAAAGGTGGGCGAG--AGG---GGCTGTGAGCAGC-----CGTTGCTGGCGGTGTTCTGTCTCTGCTCCTCCG----------------CCG---GCTGCTGTTGCTCC-------------------TGACCCTCCTCGTCCT------------------------CCGCGTCTTCC-----------------TCGCCGT |
| droEre2 | scaffold_4929:14689286-14689416 - | CATGTTCAAATCGGA--CCCAAAGGTAGGTGAG--AGG---GGCTGGGAGCAGC-----CGTTGCTGGCGGTATTCTGCCTCTGCTCCTCCA----------------CCG---GCTGCTGTTGTTCC-------------------TGAACCACCTCGTCCT------------------------CTGGTTCGTCAT----------C-G---C---CTT |
| droAna3 | scaffold_13117:2651271-2651404 - | CAGCATTAGGGCGATCCTCCGCCAGTGGTTGATCGAAG---GCATGGGATCCAC-----CCC----AGCGTCTATCTGAAAACGATGTTTAT----------------CCA---CCTGCTCCTGCTCC-------------------TGCTCCTCATCCTCCT------------------------TCCCTTCGTCTT----------C-G---TCATCAT |
| dp4 | chr3:14693225-14693346 - | CATGTTCAGATCCGA--TCCAAATGTGGGGGAC--AAG---GGCTGGGAACAGC-----CATTGCTCTGAGTGATGTGCTGCTCC-------TCCCG---CTCTCCCGTTGGCA-------------------------------------------------GTTCCTCATCCTCCTCGTCCGGGTCT-----------------------------AGTT |
| droPer1 | super_4:2921871-2921992 + | CATGTTCAGATCCGA--TCCAAATGTGGGGGAC--AAG---GGCTGGGAACAGC-----CATTGCTCTGAGTGATGTGCTGCTCC-------TCCCG---CTCTCCCGTTGGCA-------------------------------------------------GTTCCTCATCCTCCTCGTCCGGGTCT-----------------------------AGTT |
| droWil1 | scaffold_180708:9012130-9012236 - | CATGTTTAAATCTGA--ACCAAATGTGGCCGAC--AAT---GGTTGAGAGCAGC-----CATTTGTTA-----------------------------------------------------------------------------------------------GTTGTTCATCCTCTTCA-CAGGCTCC---AGCAGCTTGCTCACCCCC-C---TCAGCGT |
| droVir3 | scaffold_12963:15905405-15905563 - | CATGTTTAAATCGGA--GCCATAGGTAGCCGAC--AATGCCGGCTGCGAGCAGC-----CATTGCTTAGGGTTATCTGCGGCTTC-------TGTGGTGCCTGTTCCGTT----------------GCGTTAATCGGCTGGGAGTAGAGCTCACCGGCGGCC------------------------------TCCAGATCGCTGTCGCCT-CCTGTCGCGAT |
| droMoj3 | scaffold_6500:3051871-3052002 + | CGTGCGTAGCT---G--CTCGTGGCTGGGTGGC--GTG---GCATTGTAGAGTCTCAGCTGCTG-----------CTGCTGCTGCTGCTCAG----------------ACT---CCTGCTCTTGCTCA-------------------TGCCCCTCCAGCTCCT------------------------CCTCTTCAGCCTCGCTGT----CGC---TCAGCGG |
| droGri2 | scaffold_15252:8305990-8306138 - | CATGTTCAAATCGGA--GCCATAGGTGGCCGAC--ATG---GGTTGTGACCACT-----CATTGGCCGATGCTTGCGGTTCCTTC----TCG----------------GGT---TCCGGTTCCGCTTCGGTCGCTGGCTGGGAATAGGGTTCCTCAGCTGCAT------------------------TCGCTTCCTGAT----------C-G---CTGTCCT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:3463274-3463415 - | GGAAG-GGCCAACTTCT---CGGCCCT--------CGACACGGTGGATGAGCTTGTCAGTGGCGGATC------CAGGAGCAATTCTGCCGC-------TGGCGACAG--ATCATCGGCCA--CTGACAATGC----------------------CCATTCACTGTTCGAGGAGATCATGTCGG--------GCTCGGATG |
| droSim1 | wop21h10.b1:281-423 + | GGAAG-GGCCAATTTCT---CGGCTCT--------CGACACGGTTGATGAGCTTGTCAGTGGCGGATC------CAGGAGCAATTCTGCCGC-------TGGCGACAG--ATCATCGGCCA--CTGACAATGC----------------------CCAGTCACTGTTCGAGGAGATTATGTCGG--------GCTCGGATG |
| droSec1 | super_129:25371-25512 - | GGAAG-GGCCAACTTCT---CGGCCCT--------CGACACGGTTGATGAGCTTGTCAGTGGCGGATC------CAGGAGCAATTCTGCCGC-------TGGCGACAG--ATCATCGGCCA--CTGACAATGC----------------------CCAGTCACTGTTCGAGGAGATCATGTCGG--------GCTCGGATG |
| droYak2 | chrU:14964015-14964156 + | GGAAG-GGCCAACTTCT---CGGGCCT--------CGACACGGTGGATGAGCTTGTCAGTGGCGGATC------CAGGAGCAATTCTGCCGC-------TGGCGACAG--ATCATCGGCCA--CTGACAATGC----------------------CCACTCACTGTTCGAGGAGATCATGTCGG--------GCTCGGATG |
| droEre2 | scaffold_4929:3498112-3498253 - | GGAAG-GGCCAACTTCA---CGGGCCT--------CGACACGGTGGATGAGCTTGTCAGTGGTGGATC------CAGGAGCAATTCTGCCGC-------TGGCGACAG--ATCATCGGCCA--CTGACAATGC----------------------CCACTCGCTGTTCGAGGAGATCATGTCGG--------GCTCGGATG |
| droAna3 | scaffold_12943:2497935-2498076 + | GGCAG-AGCCAACTTCG---GAGCCCT--------TGAAACGGTCGACGAGCTTGTCAGTGGCGGCTC------CATAAAGAATCCTGCCGC-------TGGCGACAG--ACAGTCGGCCA--CTGACAACGC----------------------GCACTCGCTGTTCGAGGAAATAATGTCTG--------GCTCCGACG |
| dp4 | chr4_group3:936699-936854 - | GGAGT-GCTCGTCTACG---TGGTTTTGCCCCACGCAATACCATTGATGAGCTGGTCAGTGGTGGCTCCTCCGCCATTAGCAATTCTGCCGC-------TGGCGACAG--ATTGTCGGCCA--CTGACAATGC----------------------CCATTCACTGTTCGAGGAGATCATGTCGG--------GCTCTGATG |
| droPer1 | super_1:2415168-2415323 - | GGAGT-GCTCGTCTACG---TGGTTTTGCCCCACGCAATACCATTGATGAGCTGGTCAGTGGTGGCTCCTCCGCCATTAGCAATTCTGCCGC-------TGGCGACAG--ATTGTCGGCCA--CTGACAATGC----------------------CCATTCACTGTTCGAGGAGATCATGTCGG--------GCTCTGATG |
| droWil1 | scaffold_189765:461-602 - | GTAAC-GATAGACGGAG---ATACCTT--------CGAGGTGGTGGACGAGTTCGTCTACCTCGGATC------CTTGTTGATGGCTGACAA-------CAATG----------TTAGTCG--GGAAATACGA----------------------AGGCGCATTATCAGCGGAAGTCGTGCCTACTATTGGCTCCAGAAGA |
| droVir3 | scaffold_12963:15952027-15952160 - | ATTAGATGCCGATTGCGGTTCGTCCAT--------CAAGTCTGCGGCTGAGCTTGTCAGCGCCGT---------------CAATGCTGCCGC-------TGGCGACAG----CCTCGGC-G--CTGACAAGGA----------------------GCATGCCATGTTTGAGTATTTCCTCAACG--------AAGATGACG |
| droMoj3 | scaffold_6473:12510219-12510341 + | GGTTT-G----------------------------------------TGTGTGTGTGTGTGGTGGAACTTC---AATGCGAACCT------CTTGCCACAATCGAGTGCAATTAACTGCCA--TGATATATGGCCAATCCCA-------------------TATGCAGACGGCGACCGAGTCGAA-------GTTCGGCTG |
| droGri2 | scaffold_14853:4216060-4216150 - | ------------------------------------------------------------------------------------TCGACCGC-------TGGCCACAA--ATGGCCGGACAGACAGACA-------GACAGACAGACAGACAGACAGACTCACTGACATAATTGATCATATC----------GCTTATACG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:3636951-3637088 - | CACTTGCATGGCATAAATCAAAAGCGCCGTAGGCCT-CCACCTCG--------------GC---------------------------------------------------------------------------------------TTTACAGATATATATATATATATCGTGTATATATCTGTGCGATCGGG-A-TTGAGACTGAGGTTGGT-----CCGAG-TACTTTTGTGGCCA--TTTACACC |
| droSim1 | chr2L:3596396-3596533 - | CACTTGCATGGCATAAATCAAAAGCGCCGTAGGCCT-CCAACTCG--------------GC---------------------------------------------------------------------------------------TTTATATATATGTATATATATCGTGTATATATATCTGAGAGATCGGG-A-TTGAGACTGAGGTTGGT-----CCGAG-TACTTTTGTGGCCA--TTTACACC |
| droSec1 | super_5:1737908-1738045 - | CACTTGCATGGCATAAATCAAAAGCGCCGTAGGCCT-CCACCTCG--------------GC---------------------------------------------------------------------------------------TTTATATATATGTATATATATCGTGTATATATATCTGAGAGATCGGG-A-TTGAGACTGAGGTTGGT-----CCGAG-TACTTTTGTGGCCA--TTTACACC |
| droYak2 | chr2L:3630931-3631061 - | CACTTGCATGGCATAAATCAAAAGCGCCGTAGGCCT-CCAACTCG--------------AC---------------------------------------------------------------------------------------TATATATGTATATATATA-------TATATATATCTGTGAGATCGGG-A-TTGAGACTGAGGTTGGT-----CTCAG-TACTTTTGTGGCCA--TTTACACC |
| droEre2 | scaffold_4929:3675838-3675960 - | CACTTGCATGGCATAAATCAAAAGCGCCGTAGGCCT-CCACCTCA--------------GC---------------------------------------------------------------------------------------TATATATATATGT---------------GTGTATCTGTGGGATCGGG-A-TTGAGACTGAGGTTGGT-----CTTAG-TACTTTTGTGGCCA--TTTGCACC |
| droAna3 | scaffold_12916:5691742-5691836 - | CACTTGCAAGGCATAAATCAAAAGCGCCGTAGGCCT-CCGCCACT------------------------------------------------------------------------------------------------------------------------------------------------ATGAGT-C-TGGAGTCTGGTGATGGT-----GGAGT-GCCTTTTGTGGCCA--TTGGCACC |
| dp4 | chr4_group3:5095808-5095886 + | CACTTGCGTGGCATAAATCACAAGCGCCGCAGGCCT-GAGACTT-TGGAGTTTTTTGTGGCACAG-------------------------------------------------------------------------------------TGTGTGT--GTG----------------------------------------------------------------------------------TGTGTG |
| droPer1 | super_1:6587322-6587402 + | CACTTGCGTGGCATAAATCACAAGCGCCGCAGGCCT-GAGACTT-TGGAGTTTTTTGTGGCACAG-------------------------------------------------------------------------------------TGTGTGTATGTG----------------------------------------------------------------------------------TGTGTG |
| droWil1 | scaffold_180708:9512363-9512488 + | CACTTGCATGGCATAAATCAAAAGCGCCGTAGGCCTTCCACCTCT---------ATAT-------AGTATAATGTGTTCCACATACTCGAC---------------------------------------------------------------------------------------------------TTGGG-AGTTGAATTCGAAGTTG-T-----CCATG-T-CTTTTGTGGCCAATTTTACACC |
| droVir3 | scaffold_12963:15108661-15108745 + | CACTCGCGTGGCATAAATCAAATGCGTTGCAGGCCG-CCGGCGCT-------CCACGTT-----------------------GCACTCGACTC--------------------------------------------------------------CT-------------------------------------------------------------------C-TA--CTTGCGGCTA--GCAGCTCC |
| droMoj3 | scaffold_6500:18077427-18077576 + | CACTTGTGTGGCATAAATCAAATGCGCAGCAGGCCG-CCAGCTGA--------------------CGCTGACCGTGTT----GCACTCGAGTCGAG------------------------TTGAGTGGA---GTCAACTCGCCGCAGCTTTTCATTCGCATATACCCA-----------------------------------------GCCAAGCCAAG-----TGGTCTTTGGGGCCA--TTTACACG |
| droGri2 | scaffold_15126:4287105-4287265 - | CACTTGCATGGCATAAATCAAATGCGCCGCGGGCCT-TTGCTACG-----------------------------TGCCACATGCACTCGACTCTCGCCTCTCAACACGACTGACCGAACATTGGCTGGACAAGCCAAGCTGCAG------------------------------------------CAGATCGGGGCATTCCACTCCAAG---------------TGGTCTTTGAGGCCA--TTTGCACG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:20562282-20562463 + | GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGTT--------TGGACTGCTCC--------------------------------------------------------------------------------TCCTCCAACTACTACTGCGGCC-----------------------------------GCTGCTGCTGCTGCTG---CGG-----------------------CTGCTGCATCCGC---CTGCAACCT--------------------------GCAACACTCACACCACGGCAA----------------------------------------------------CAGAAGTAGACGCGTCGC |
| droSim1 | chr2L:20133895-20134076 + | GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGTT--------TGGACTGCTCC--------------------------------------------------------------------------------TCCTCCAGCTACTACTGCGGCC-----------------------------------GCTGCTGCTGCTGCTG---CGG-----------------------CTGCTGCATGCGC---CTGCAACCT--------------------------GCAACACTCACACCACGGCAA----------------------------------------------------CAGAAGTAGACGCGTCGC |
| droSec1 | super_18:446156-446334 + | GGTCCTTGGGCCA-TCGCTGGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGTT--------TGGACTGCTCC--------------------------------------------------------------------------------TCCTCCAGCTACTACTGCGGCC-----------------------------------GCTGCCGCTGCTGCTG---CG--------------------------GCTGCATCCGC---CTGCAACCT--------------------------GCAACACTCACACCACGGCAA----------------------------------------------------CAGAAGTAGACGCGTCGC |
| droYak2 | chr2R:6918558-6918738 + | GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGTT--------TGGACTGCTCC--------------------------------------------------------------------------------TGCTCCAACTACTACTGCGGCC-----------------------------------GCTGCT---GCTGCTG---CGG-----------------------CTGCTGCATCTGC-ATCTGCAACCT--------------------------GCAACACTCACACCACGGCAA----------------------------------------------------CAGAAATAGACGCGTCGC |
| droEre2 | scaffold_4845:3882318-3882503 - | GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGTTTGGACGTTTGGACTGCGCC--------------------------------------------------------------------------------TCCTCCAACTACTACTGCGGCC-----------------------------------GCCGCTGCTGCTGCTG---CGG-----------------------CTGCTGCATCT-------GCAACCT--------------------------GCAACACTCACACCACGGCAA----------------------------------------------------CAGAAGTAGACGCGTCGC |
| droAna3 | scaffold_13117:435722-435893 + | GGCC-TTGGTC---TCCATCTT-GGGGTAGCCGTAGGGAGC----GATGGCCTTGT-TGGTGAG-TTCCA----------GGGGCTTCTCT--------------------------------------------------------------------------------GGGGCCATTTGCTGCAGCTGCT-----------------------------------GCTGCTGCTGCTGCTGGTGTTG-----------------------CTGCTGCTTCT-C---C-TCGGCGT-------------------------CGCGTCGCTCGCGCAGCTGCT------------------------------------------------------CGTAGTAGGGACGATGC |
| dp4 | chr4_group3:7758140-7758314 - | GGTCCTTTCGCCAGGCGCTCGTTTCAGTCGTCGTTGCGTGTTGTAGGTGGActggtctgctctg-ctccgct------------ctgc---------------------------tctgc---cc-------------------------------------------------------------------------------------------------------agcactgctGTTGCTC---C---------------------------ACTGCATCTCTCTC-------CTacacacacacacacgcacgcacacacacg-caagca---cacaACAG----------------------------------------------------CAAAAAT-CTCGCGACGC |
| droPer1 | super_1:9204247-9204421 - | GGTCCTTTCGCCAGGCGCTCGTTTCAGTCGTCGTTGCGTGTCGTAGGTGGACTGGTGCGGTCTG-ATCCGCT------------TTGC---------------------------TCTGC---CC-------------------------------------------------------------------------------------------------------AGCACTGCTGTTGATC---C---------------------------ACTGCATCTCTCTC-------CTacacacacacacacgcacgcacacacacg-caagca---cacaACAG----------------------------------------------------CAAAAAT-CTCGCGACGC |
| droWil1 | scaffold_180708:1965385-1965667 + | GGTCCTTTCGCAA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGtggcctggtctggtctggcttggac--------tggactggtctgAAGTTTTTGGCAAGTTTTTTTGCTCTGC---C--------------------ACTGCCACAACCAG----TG-------TTCTTCAACTAAtgctgcttct-----------------------------------actgctaaagctgctg---ctg-----------------------ctgctgcATCT-TCAC-------CTGCACACATAGCCACGT-CG-----ACTCGTCGGGGT---CACCAAGGA-AAAAATCAACGAAAAATAAT------AA---TAACTGCTAAAAATGAAAGAAAAAAGAGTCTCGTCGC |
| droVir3 | scaffold_12963:13534067-13534330 - | GGTCCTTTCGCAA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGTCTGGTCTGCTCTG-TGCT------------GGTCTGC---------------------------GCTGCTGCCC----AGATTTTTGCTGCC-ACTGGCACACACTGATTGGGATGCCTc------tgccgctgctgccgttgctgtcgagccgacgttgctgctgattttgctgttgctgttgctgttgctg---ttg-----------------------ctgctACATCT-TCC---------------------------------------------------------GCAATG----ACGACGACCAACCC---AAA---CTTCTGTTTCAATTG----CCGTACGCGACGCGACGC |
| droMoj3 | scaffold_6500:24644505-24644771 + | GGTCCTTTCGCAA-TCGCTCGT-TCAGTCGTCgttgcgtgttgtaggtggtctggtctgctctg-gtct------------ggcctgc---------------------------gctgctgttcagcctactttttgatgcc-actgccacacactgatggtgatgcctt------cgctgctgctgctgctgctgct-----tctgttgctgct---gccgtcgttgctgtcgtcgctgcta---ttg-----------------------ctgcCACATCT-TCT---------------------------------------------------------ACAACGACCGACGACGACCAACCC---AAACTGCTTCTGTTTCAATTG----CCGTACGCGACGCGACGC |
| droGri2 | scaffold_15126:6330398-6330651 + | GGTCCTTTCGCAA-TCGTTCGT-TCAGTCGTCGTTGCGTGTTGTAGGtggtctggtctgctctg-gtct------------ggtctAC---------------------------GCAGCTGCTCC-CCAAACTTTTGCTGTCTGCTGA-----ACTGAATGTAATGGCTc------tgctgatgctgatgcc-----------------------------------gccgatgccgctgatg---ccgctgctgcCCATCGCTGCCCAATGCAGCCACATCT-TCG---------------------------------------------------------ACAATG----ACGACGACTAACCCACCAAA---CTTCTGTTTCAATTG----CTATACGCGACGCGACGC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:21263917-21264049 + | GCATTGACTTCTTTTGTTCTT---TGTTTTTATTCCCTGTCAG--AGAGTATATT--GATTTTAGGTGG-----------------------AC-------ATTTGCGACCATATAAAATAT-ATATATTCCTGATAAAGAATATTTA--------ATATATCTTCTTTTTCGGTATAC |
| droSim1 | chr2L:20861453-20861585 + | GCACTGACTTCTTTTGTTCTT---TGTTTTTATTCCCTAGCAG--AGAGTATATT--GATTTTAGGCGG-----------------------TC-------ATTTGCGACCATATAAAGTAT-ACATATTCCTGATCAGAACTATTTA--------ATATATCTTTTTTTTCGGTACAC |
| droSec1 | super_18:1195266-1195398 + | GCACTGACTTCTTTTGTTCTT---TGTTTTTATTCCCTAGCAG--AGAGTATATT--GATTTTAGGCGG-----------------------TC-------ATTTGCGACCATATAAAGTAT-ACATATTCCTGATCAGAACTATTTA--------ATATATCTTTTTTTTCGGTATAC |
| droYak2 | chrU:19793626-19793766 + | GAACTTAATTATATCGTTCTC---T-CTCTTACACCCTTAAAG--AGGGTGTATT--GATTTTAACCGGAAAAAC-----GCAAAAAAGGAGAC-------ATTTGCGGCCATATAAAGTAA-ATATATTCTTAATCAGTATCAA-----------------CGTCAGTTTTAAGATCC |
| droEre2 | scaffold_4784:24793627-24793751 + | TAATTGAATTTCTTTGGTTTT---T-TTACCATTTACTTTTAG--AGAATATACTAGAATTTC--TGAGAAGTGTGTAACAGGCAGAAGGAAAC-------GTTTTCGACCATATAAATTAT-ATATATTCTTGATCAGGA-------------------------------------- |
| droAna3 | scaffold_13499:388035-388162 - | TTATT----TCCTTTGTTCTT---CGTTTTTATACCCTTGCAG--AGGGTATTAT--AATTTTGGTCAAAAGTGTGCAACGCAGAGAAGGAGAC-------ATCTCCGACCCTATAAAGTAT-ATATATTCTTGATCAGGATCACCT-------------------------------- |
| dp4 | chr2:13223937-13224089 - | CCGTTCGCCTTTTTGGTTCTTTATTGTTTTTATACCCTTCTAG--AGAGTATTAC--GATTTTGGGCTAATGTCTGCAAGACTGGAAC--------CTGCAACATAGAATCCCATAGGGTATTATATAT-----ATGAGGATCGGTAG--------CCATCTCT-CTTTTTCTATACAC |
| droPer1 | super_0:7229185-7229317 + | CCGTTCGCCTTTTTGGTTCTTTATTGTTTTTATACCCTTCTAG--AGAGTATTAT--GATTTTGGGCTGCTGTCTGCAAGGCTGAAAT--------CTATTGCATAGAATCCTATAGGGTATTATATAT-----GTCAGGA-----------------------------TCGGTAGCC |
| droWil1 | scaffold_181150:776667-776791 - | T--------TTTTTTGATTTT---CTTTTTTATAACCTTGCAAAAAGGGTATATT--CATTTTGGTCAAAGGAAT-----------------GC-------ATCTCCGACCATGTAAATTAT-ATATATTCTTGATTAGCACGACGAGACGAGTTCATATAG----------------C |
| droVir3 | scaffold_12963:16876342-16876466 - | GAACTCGTTTCTGGTGTACGT-CGTGTTTTTATACCCTTGTAG--AGAGTATTTT--AATTTTGTCGTGGAATGTGCAACGCATGGATGGAGAC-------ATTTGGGACCCCATAAAGTAT-ATGTATTCTAGATAA----------------------------------------- |
| droMoj3 | Unknown | GGTTTCAGTTCTTTTGTTTTT---TTTTG--ATATCCCAAA-------------------------------TGTGAAGTGCTAAAGAGTTGAAATTCGGAATGTAGATTGGCAT-----------------TGAGTTCAATAAGATA--------TGGCGGATATATTGTATAC---A |
| droGri2 | scaffold_3049:4191-4318 - | ATTGACAAAT---TTATTTTT---AATTCTTCTTTTGTTCGAG--TGGGTATAAC--AGGTAGAAGGAA-----------------------GC-------ATCTCCGACGCCATAAAGTAT-ATATGTTTCTGAGAAGGATCAATTG--------AGGAGTCGATGTAGTTCGT---C |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:2594652-2594793 - | TAGAACTGGAAATCTGGGCAAATAA--AGCACGTTGCTCCCTGTTTACTTGGGTTTTCTG----------------------------TTCATTTCGCCTATCGAACGTTGAACTTAAAAAGCCACGATCAGTTGTTTAACATACAGATATCTCTGTACACAAGAAGATTCA |
| droSim1 | chr2R:1414726-1414867 - | TAGAACTGAAAGTCTCGGCAAATAG--AGCACGTTGCTCCCTGTTTACTCAGGTTCCCTG----------------------------TTCATTTCGCCTATCGAACGTTGAACTTCAAGAGCCACGATCAGTTGGTAAAGATACAGATATCTCTGTATACTAGAAGATACA |
| droSec1 | super_1:259050-259190 - | TAGAACTGGAAGTCTCGGCAAATAA--AGCACGTTGCTCCCTGTTTACTCAGGTTCCCTG----------------------------TTCAGTTCGCCTATCGAACGTTGAACTTCAAGAGCCACGATCAGTTGGT-AGGATACAGATATCTCTGTATACTAGAAGATACA |
| droYak2 | chr2L:15337545-15337682 - | TAGAAATGAAAATCTCGGCAAGTAA--AGCACGTTGCTCCATGTTTACTCAGGTTTGCTG----------------------------TTTATATCGCCTATCAAACGTTGAACTTGA---ATCACGATCAGTTGGTCAACATACATATATTTGT-CACACTAGGTGATCCA |
| droEre2 | scaffold_4929:19950710-19950840 + | TAGGACTGCAGATCCCGGCAACTAA--AGCACGTTGCTCCCAGTTTACTCAGGTTCGCTG----------------------------TTTATATCGCCTATCGAGCGTTGAACTTGAGGAGCCACGATCAGTTGGTCAGCATACATATA-----------AAGATGATCCA |
| droAna3 | scaffold_13266:18414789-18414883 + | AAGTCTA----ATTTCGGT------------------GCCTTGTTTACTTCGCTCTCCGGCGGAGAGCTGCAGTGCACGAGGTGTCTAATCGGCCAGCCCATAGAGCAATGAACTT-------------------------------------------------------- |
| dp4 | chr3:859167-859237 - | TAGCACAGAAAATCTCGGCAATCAAAAAACACGCCGTT-TCTGTTTACGTTACTTCTCGT----------------------------CCCGTCCCGTCT------------------------------------------------------------------------ |
| droPer1 | super_2:1035040-1035110 - | TAGCACAGAAAATCTCGGCAATCAAAAAACACGCCGTT-TCTGTTTACGTTACTTCTCGT----------------------------CCCGTCCCGTCT------------------------------------------------------------------------ |
| droWil1 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droGri2 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:2723022-2723155 - | ACATCATCGATTATTGTCGATGCCGGCGTT---TCCCG---CTC------------------------------------------------------------------------------CAGGCTGTCGTCCATGGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAAGGCGTCGTCTCGCTC---CGCG---TCTGGTCCACG |
| droSim1 | chr2R:1535693-1535826 - | ACATCATCGATTATTGTCGATGCCGGCGTT---TCCCG---CTC------------------------------------------------------------------------------CAGGCTGTCGTCCATGGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAAGGCGTCGTCTCGCTC---CGCG---TCTGGTCCACG |
| droSec1 | super_1:401443-401575 - | ACATCATCGATTATTGTCGATGCCGGCGTT---TCCCG---CTC------------------------------------------------------------------------------CAGGCTGTCGTCCATGGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAA-GCGTCGTCTCGCTT---CGCG---TCTGGTCCACG |
| droYak2 | chr2L:15457678-15457811 - | ACATCATCGATTATTGTCGATGCCGGCGTT---TCCCG---CTC------------------------------------------------------------------------------CAGGCTGTCGTCCATTGAGTTTGTGTTGTCTGCATTCAGCTCGGTGGATGTCAGCCATCGGTGGAAGGCGTCGTCGCGCTC---CGCG---TCTGGTCCACG |
| droEre2 | scaffold_4929:19824507-19824640 + | ACATCATCGATTATGGTCGATGGCGGCGTC---TCCCG---CTC------------------------------------------------------------------------------CAGGCTGTCGTCCACGGAGTTCGTGTTGTCGGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAAGGCGTCGTCGCGCTC---CGCG---TCCGGTCCACG |
| droAna3 | scaffold_13266:9050244-9050380 - | ACATCATCGATTATTGTCGATGTTGGCGTT---TCCTG---CTC------------------------------------------------------------------------------CAAGTTATCGTCAAGCGGGTTTGTGTTGTCGCCATTTAGCTCCGTAGATGTCAGCCACCGGTGGAAGGCGTCATCCAGCTC---CTCGGGGTCATGTCCACT |
| dp4 | chr3:994566-994696 - | ACATCATCGATTATTGTCGATGCTGCTGTT---TCCTG---CTC------------------------------------------------------------------------------CGAGGCATCGTCCGGCGTGTTTGTGCTGTCAGCATTCAGCTCCGTCGATGTCAGCCACCGATGGAACGCATCATCCAGGTC---CTTG---CC---ACCGCT |
| droPer1 | super_2:1175582-1175712 - | ACATCATCGATTATTGTCGATGCTGCTGTT---TCCTG---CTC------------------------------------------------------------------------------CGAGGCATCGTCCGGCGTGTTTGTGCTGTCAGCATTCAGCTCCGTCGATGTCAGCCACCGATGGAACGCATCATCCAGGTC---CTTG---CC---ACCGCT |
| droWil1 | scaffold_180745:52392-52526 + | ACATCATCGATTATCGTTGATGCTGATGTTTTTTCCTG---CTC------------------------------------------------------------------------------CAAGCTAACGTCCAGTGTATTGGTATTTTCAACATTCAGCTCTGTGGATGTTAGCCAACGATGAAATGCATCATCATCTTGTTCCA-----TC---ATCTTC |
| droVir3 | scaffold_12875:15675057-15675224 - | ACATCATCGATTATTGTTGATGCTGGCGTT---TCCTG---TTCGACAGCAACTGCTGCTGCTGCTGC---------------------------------------TGCCGCAGCTGCTGCCAAGCTATCGTCGAGCGTGTTTGTGCTGTCAACATTCAGTTCCGTCGATGTCAGCCAGCGATGAAATGCATCGTCAGCTTC---CTCA--------ATTTCC |
| droMoj3 | scaffold_6496:8124753-8124946 + | ACATCATCGATTATTGTTGATGCTGGTGTT---TCCTGCTGCTGAACGGCAAgTGtTGgTGgTGgTggGtgGGgTggGGgTGtTGgTGgTGgTGgTTgTGgTTgTGgTTgTGgTGgTGgTGTCAAGCTATCGTCGAGCGTGTTTGTGCTGTCAACATTGAGTTCCGTCGATGTCAGCCAGCGATGAAATGCATCGTC--------------------------- |
| droGri2 | scaffold_15245:12478490-12478641 - | ACATCATCGATTATTGTTGATGCTGATGTT---TCCTG---CTCAATTGTAGCTTCTGCTGCAGCTGC---------------------------------------AGCTGCTGCTGCTGCCAAGTTATCGTCAAACATATTTGTACTGTCAATATTGAGTTCCGTCGATGTCAGCCAGCGATGAAATGCATCATC--------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:3294222-3294357 - | TTTTCGTTTAC-----TTTTTAACCCTCCGCT--CGAGAACGTGGTTTCT---TTTGCGACGTGCAATACTCT------------------------------------------------------------------------GTGGCAGAAGTCT-TGC-ACCGTTCCAAAAGAG-AGCAGCACGTGGAGCGACGAGAACGGCCG-TACAATACCCAAG |
| droSim1 | chrU:460991-461115 - | TTTT----------------TAACCCTCCGCT--CGAGAACGTGGTTTCT---TTTGCGACGTGCAATACTCT------------------------------------------------------------------------GTGGCAGAAGTCT-TGC-ACCGTTCCAAAAGAG-AGCAACACGTGGAGCGACGAGCACGGCCG-TACAATACCCAAG |
| droSec1 | super_1:944262-944397 - | TTTTCGTTTAC-----TTTTTAACCCTCCGCT--CGAGAACGTGGTTTCT---TTTGCGACGTGCAATACTCT------------------------------------------------------------------------GTGGCAGAAGTCT-TGC-ACCGTTCCAAAAGAG-AGCAGCACGTGGAGCGACGAGCACGGCCG-TACAATACCCAAG |
| droYak2 | chr2L:15977521-15977656 - | TTTTCGTTTAC-----TTGTTAACCCTCCGCT--CGAGAACGTGGTTTCT---TTTGCGACGTGCAATACTCT------------------------------------------------------------------------GTGGCAGAAGTCT-TGC-ATCGTTCCAAAAGAG-AGCAGCACGTGGAGCGACGAGCACGGCCG-TAAAATACCCAAG |
| droEre2 | scaffold_4929:19300554-19300689 + | TTTTCGTTTAC-----TTTTTAACCCTCCGCT--CGAGAACGTGGTTTCT---TTTGCGACGTGCAATACTTT------------------------------------------------------------------------GTGGCAGAAGTCT-TGC-ACCGTTCCAAAAGAG-AACAGCACGTGGAGCGACGAGCACGGCCG-TACAATACCCAAG |
| droAna3 | scaffold_13266:3498798-3498932 - | ACCC-CTTTAT-----TTTTATTTTCACCGTT--CGAGAGGGTGTTCTCTTTGTTTTCGGCGTGCAAAACCCT------------------------------------------------------------------------TTG--AGAAGTTT-TGC-ATCGTTCGAAATTAGGGGCAGCACCTCGAACA--GTACACGGCCG-TAAAATTCCTAAA |
| dp4 | chr3:1570003-1570137 - | TTTTTGGTT---------TTGT----------TTTGAGAACGTGCCTTCTTT-TTTTTGGCGTGCAACACTT---------------------------------TTTTC---------------------------GCGTCTCTGTGG-AAAAGTTT-TGC-ATCGTTTCAAAAAAAAAGATACACGTCGA----CACATACGGCCGCTAAGATTCCAAAA |
| droPer1 | super_2:1744183-1744317 - | TTTTTGGTT---------TTGT----------TTTGAGAACGTGCCTTCTTT-TTTTTGGCGTGCAACACTT---------------------------------TTTTC---------------------------GCGTCTCTGTGG-AAAAGTTT-TGC-ATCGTTTCAAAAAAAAAGATACACGTCGA----CACATACGGCCGCTAAGATTCCAAAA |
| droWil1 | Unknown | TTTTTTTTTTT-----TGTTTTACCTTTTTGT--TGAGGAAA---------------------------CATTTCAAAAAATTCTCCGTTTAAGTGCAAGAAACG-------------------------------------------------TGCTCTGCCTACG--CCAAA-----A----------------GTAATACGGCCGTAAACATTCCAAAA |
| droVir3 | scaffold_12875:10810504-10810650 - | TTTTGATTTACTTTAATTTCGTTTGCATCGAT--T-AAAACGTGT-TTG----TTTG---CGTGCAATCACT--------------------------------TTTTCCACCGTGTC----------------CCGGC--GTGTGCGA-GAAAGTCT-TGC-AACGTACAA-------AACAACACGTTGA----TAAGCACGGCCGCAAAAATTCCCAAA |
| droMoj3 | scaffold_6496:16132312-16132448 + | TTTT--------------------GCATCGAT--T-AAAACGTGT-TTG----TTTGCG-TTTGCAACAACT--------------------------------TTTTCCACCGTGTCCCCCA-----------CCGGCGTGTGTGCGA-AAAAGTCTTTGC-AACGTTCCAAA-------CAACACGTCGA----TAAGTACGGCCGCAAAAATTCCTAAA |
| droGri2 | scaffold_15245:3916304-3916452 - | TTTTCGTTTG---------------CATCGATTGT-GAAACGTGT-TTG----TTTGTAGCGTGCAACACACT-------------------------------TTTT-CAC----T--CCCACCCAGCGTGTGT--GTGTGTGTGTGA-AAAAGTCTGTGC-AACGTTCAGA------AACAACACGTCGAA----CTCTACGGCCGCAAAAATTCCCAAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:9893349-9893526 - | CGGAAAAG-------------CCAA-GGCGGAC---------------------------------------TTTCCAC------------------------------------TTTT----------CGTTTGG------------C-----TGGCCTGGAAAAGCTCTCTT---------TCTCTAT-TG------------CCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCG---AGCCAAAAAC----CATCGAAAAGCCTGGCAAG----------------------------------------CACACAGCTCGCACAAATTTTC |
| droSim1 | chr2R:8329883-8330063 - | CGGAAAAT-------------CCAA-GGCGCAC---------------------------------------TTTCCAC------------------------------------CTTTCCA-------CGTCTGG------------C-----TGGCCTGGAAAAGCTCTCTT---------TCTCTAT-TG------------CCTCTATGGCTCGGCCGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCG---AGCCAAAAAC----CATCGAAAAGCCTGGCAAG----------------------------------------CGCACAGCTCGCACAAATTTTC |
| droSec1 | super_1:7418494-7418674 - | CGGAAAAG-------------CCAA-GGCGCAC---------------------------------------TTTCCAC------------------------------------CTTTCCA-------CGTCTGG------------C-----TGGCCTGGAAAAGCTATCTT---------TCTCTAT-TA------------CCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTCCG---AGCCAAAAAC----CATCGAAATGCCTGGCAAG----------------------------------------CACACAGCTCGCACAAATTTTC |
| droYak2 | chr2R:7060227-7060403 + | CGGAAAAG-------------CCAA-GGTGGAC---------------------------------------TTTCCAC------------------------------------TTTT----------CGTTTGT------------C-----TGGCCTGGAAAAGCTCTCTT---------TCTCTATT--------------CCTCTATGGCTCGCCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCG---AGCCAAAAAC----CATCGAATAGCCCGGCAAG----------------------------------------CACACAGCTCGCACAAATTTTC |
| droEre2 | scaffold_4845:15928216-15928392 + | CTGAAAAG-------------CCAA-GGCGGAC---------------------------------------TTTCCAC------------------------------------TTTT----------CGTCTGG------------C-----TGGCCTGGAAAAGCTCTCTT---------TCTCTATG--------------CCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCG---AGCCAAAAAC----CATCGAATAGCCGTGCAAG----------------------------------------CACACAGCTCGCACAAATTTTC |
| droAna3 | scaffold_13266:6006643-6006792 + | -------------------------------AC---------------------------------------TTTCCAC------------------------------------TC---------------------------------------GCTGGAAAAAGCTTTCAT------------CCATTCCGGTTGCAACTTGCCACT------C---GACTCTGGGCTCCTAATCCAAATTGCGAGAAAGATCCGCTTTTCG---AGCCAAAAACCGAGCCACCGAAA-CTGGTCAAG----------------------------------------T----AGTACGCACAAATTCAA |
| dp4 | chr3:11241780-11242024 + | CGAATGAG-------------AGAAAGGTGGAGATACAAAGAGAGAAACAATGTTGCCTGCCTTTTCCCCAGTTTC--------------------------------------------CCCAGTGTTTGTGTGT------------GTGGGGCGAACTGGAAAACCTCTGTT---------TT-CCATCCC------------CCTTTTTGG------CGCGCTGAGCGCCTATTCCAAATTGCGAGAAAGATCCGCTTTTCG---AGCCAAAAAG----CCACCAAAAGCC---CAAGGAGTTGTCGCA-CTCCGGACTACGCATAAAATCCCCCAAAAGCAGAACTCGC---------- |
| droPer1 | super_4:6644552-6644788 + | CGAATGAG-------------AGAAAGGTGGAGATACAAAGAGAGAAACAATGTTGCCTGCCTTTTCCCCAGTTTC--------------------------------------------CCCAGTGTTTGTGTGTGTGTGTGTGTGTGTGTGACGGACTGGAAAACCTCTGTT---------TT-CCATCCC------------CCTTTTTGG------CGCGCTGAGCGCCTATTCCAAATTGCGAGAAAGATCCGCTTTTCG---AGCCAAAAAG----CCACCAAAAGCC---CAAGGAGTTGTCGCA-CTC-------------------------CGG--ACTACGCATAAAAT--- |
| droWil1 | scaffold_180745:1743803-1743968 + | CGGAAAAG-------------CCAA-AGCATAT---------------------------------------AC----------------------------------------------------------TAGA------------T-----TGTACTGGAAAAGCTCTGCAACCAAAAAATT-GCGTCGG------------TCATCTCTG------AGGTCTGTGCGCCTAATCCAAATTGCGAGAAAGATCCGCTTTTTGGAGAGCC----------CACCACGTTGA-----AAG---------GA-GTA-------------------------CGTACAATGAAAAAAATTGGCC |
| droVir3 | scaffold_12875:2042187-2042370 + | CAGGAAAAGCATGCGGAAAAGTGCG-TGTATGGAAAAGCAGCAAT---------------------------CGC--AAACGCCTGGAAAAGCGACCGACTG----------------------------------------------------------------CCGCCGTT---------TG-CCA------CAGCA---C-GCTTTTTCG------ATATCTGTGCGCCTAATCCAAATTGCGAGAAAGATCCGCTTTTAG---AGCTAG----------TTCAAGGCA----CACGCAGTTCGC--AGC---------------------------TC-------------CACTGTG |
| droMoj3 | scaffold_6496:23220919-23221095 - | TGGAAAAG-------------CGCG-TGTGGAGACAAGCAGCGAC---------------------------CGTACGCCCGCCTGGAAAGCCGACTGCCCGCCAGCATTTGTAGCTC---------------------------------------------------------------------------TGTAGCA-----GCTTGTTGG------ATAGCTGAGCGCCTAATCCAAATTGCGAGAAAGATCCGCTTTTAG---AGCTAG----------TTCAAGGCACACGCAGC----------------------------------------TCCACAGCGGGCACAA------ |
| droGri2 | scaffold_15112:4157535-4157620 + | CGGAAAAG-------------C-----GCAAAA---------------------------------------TTTGCGA------------------------------------CACT----------CGCTCAA------------C-----TGGC----------------------------------------------------------------AGCTGGGCGCCTAATCCAAACTGCGAGAAAGATCCGCTTTTAG---AGCTA------------------------------------------------------------------------------------------ |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:19621540-19621679 - | GG-AT----GGGAA--A-------TTATACATAGGTG------TTATATCT-AGGCCAAATATATATACTTG--TTCTATGTA---TTAGTTATTTGCAAAGGAATACATGTG-CCTGTATATATATTCGGTAAAATCACATCTTTGAAT--TG-CCACAGCTCGCTAGT |
| droSim1 | chr2R:18187644-18187778 - | GG-AT----GGGAA--A-------CT----ATAGGTA------TTATATCT-AGGCCAAATATATATACTTG--T-CTATGTA---TTAGTTATTTGCAAAGGAATACATGTG-CGTGTATATATATTCGGTAAAATCACATCTTTGAAT--TG-CCACAGCTCGCTAGT |
| droSec1 | super_9:2901906-2902041 - | GG-AT----GGGAA--A-------CT----ATAGGTA------TTATATCT-AGGCCAAATATATATACTTG--TTCTATGTA---TTAGTTATTTGCAAAGGAATACATGTG-CGTGTATATATATTCGGTAAAATCACATCTTTGAAT--TG-CCACAGCTCGCTAGT |
| droYak2 | chr2R:19599592-19599718 - | TA-AG----GGGAA--A--------------------------TTATACCT-AGGCCAAATATATATACTTG--TTCTGTGTA---TCAATTATTTGCAAAGGAATACATGTG-CCTGTATATATATTCGGTAAAATCACATCTTTGAAT--TG-CCACAGCTCGCTAGT |
| droEre2 | scaffold_4845:20984379-20984510 - | CT-GTAGAAGGAAA--A------------------------G-TTACACCT-AGGCCAAATATATATACTTG--TTCTATGTA---TTAATTATTTGCAAAGGAATACATGTG-CCTGTATATATATTCGGTAAAATCACATCTTTGAAT--TG-CCACAGCTCGCTAGT |
| droAna3 | scaffold_13266:8260384-8260523 - | GG-TT----CAATG--A-------TTAT---TAGA------GCTAACAACTAATGCCAAATATATATACTCA--ATCGATGTA--CTTGGTTATTTGCAAAGGAATACACTGCGTATGTATATATATTCGGTAAAATCACATCTTTGAAT--TG-CCAAAGCTTGTTAGT |
| dp4 | chr3:9376521-9376668 + | AC-------GAGAA--A-------TGCCATATAGGCAATAAACTATTAGCT-ATCGCAAATATATATACTCA--TTTCATGTA--CTTGTTTATGTGCAAAGGAATACATTTTTGTTCTATATATATTTGCTTTAATCACATCTTTGAATCTTT-CCATAGCTCGTTAGA |
| droPer1 | super_4:4699742-4699885 + | GAGAT----GCCA----------------TATAGGCAATAAGCTATTAGCT-ATCGCAAATATATATACTCA--TTTCATGTA--CTTGTTTATGTGCAAAGGAATACATTTTTGTTCTATATATATTTGCTTTGATCACATCTTTGAATCTCT-CCATAGCTCGTTAGA |
| droWil1 | scaffold_181141:2403442-2403586 + | GT-GT----AGGTATAAGTGTTGCCT----TTTTGTG------TTATTTCT-AGTTCAAATATATATACGCA--TTTTCTGTA--TATGACTATATGCAAAGGTATACATTTA---TGTATATATATTTGGTAAAATCACATCTTTGAAT--AATCCATAGCTCGTCAGA |
| droVir3 | scaffold_12823:519093-519222 + | GT-AT----TAT------------CT----AC-----------ATATATCT-ATGTCAAATATATATATCCCCATTTTGTATA--ACTATTTATATGCAAGGGTATACGTTTA---CGTATATATATTTGTTAAAATCACATCTTTGAAT--GCTATATAGCTCGTTAGC |
| droMoj3 | scaffold_6496:318093-318227 + | AG-TT----GCAGA--A-------GTATTCATATGTA------CAAAATCTTATATCAAATATATATATATG--TCCCA----------TTTGTATGCAAGGGTATGCGTTTC-TCTATATATATATTTGTTAAAATCACATCTTTGAAT--GGTATTTAGCTCGTTAGC |
| droGri2 | scaffold_15245:6158007-6158151 - | TT-GC----CAGGA--G-------TC-T-TACAACTAACTAC-TTATATCT-ATATCAAATATATATACTCA--CTTTGTGTATAGCTACGTATAAGCAAAGGTATACGCTTG---CGTATATATATTTGTTAAAATCACATCTTTGAAT--GGTATATAGCTCGTCAGC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:3673811-3673963 + | CAAAAACGA--------AAGAGGGGAAGAGGCTGAGAGCGGGAAAGTGAGAAGTAGAGAGCGCAGATAGGGAGTGGG-AGCTTAT----------------------------A-----------------CCGTTATAAAGCCAACTTCCGTT--CT----GCGTTTCGTTCCAAC-C-----CCCCACCTCTCT-------TTCCC---TCTTTTGGCATTGCAAAA |
| droSim1 | chr2R_random:948112-948272 + | CAAAAGCGGATGAGGTGAAGAGGGGAAGAGGCGGAGAGCGGGAAAGGGCGAAGAAGAGAGCGCAGACAGGGAGTGGG-AGCTTGT----------------------------A-----------------CCGTTATAAAGCCAACTTCCGTT--CT----GCGTTTCATTCCCCC-GCA---CCCCACCT--CT-------TTCCC---TCTTTTGGCATTGCAAAA |
| droSec1 | super_1:1330268-1330428 + | CAAAAGCGGATGAGGTGAAGAGGGGAAGAGGCGGAGAGCGGGAAAGGGCGAAGAAGAGAGCGCAGACAGGGAGTGGG-AGCTTGT----------------------------A-----------------CCGTTATAAAGCCAACTTCCGTT--CT----GCGTTTCATTCCCCC-GCA---CCCGACCT--CT-------TTCCC---TCTTTTGGCATTGCAAAA |
| droYak2 | chr2L:16346698-16346837 + | CAAAAGGGG--------AAGA--------CGCGGACAACGGGAAAGGGCAAACACGAGAGCGCAGGAAGGCAGTGGG-AGCTTGT----------------------------A-----------------CCGTTATAAAGTCAAATTCCGTT--CT----GTGTTTCTTTTCACC-------CCCCACCT--CT-------T--CC---TCTCTTGGCATTGCAAAA |
| droEre2 | scaffold_4929:18933782-18933931 - | CCAGAGGGG--------AAGGAGGGAAGAGGCGGACAGCGGAAAAGGGCGAA-CAGTGAGCGCAGGAAGGGAGTGGG-AGCCTGT----------------------------A-----------------CCGTTATAAAGTCAATTTGCGTT--CC----GCGTTTCTTTCCACC-C-----CCCCACCT--CT-------TCATC---TCTTTTGGCATTGCAAAA |
| droAna3 | scaffold_13266:10179298-10179443 + | AGCAGACGA----GGTGCAGGGGGAGAATAAAAATAACCAAAAAAAATAATAAGATAAAGTGAACTAAGAGAGTTGG-AATTT------------------------------------------------CCATATCAGCACCCATTTTCGAT--TT----ACATTCTCCTCCACCCT-----CCCCACCC--------------CACCTGCTG---CTGGTGCA--A |
| dp4 | chrXL_group1e:1273472-1273542 - | AGAGAGAGA--------GAGAGAGAGAGAGAGAGAGAGAGGGAGAGGGAGAGGGAGAGGGTGATGGTTGGGTGTGGG-AG----------------------------------------------------------------------------------------------------------------------------------------------------- |
| droPer1 | super_4:2253896-2254021 + | CAAGAGAGA--------GAGAGAGAGAGAGAAAGAGAGCGAGAAAGATAGAAGCAGAGCGAGAGCGAAAGTGATAGA-TAT--------------------------------A-------------TAGTTTATACCAAACTTTTTTAATAAT--CC----ATGTTCTTTTCGATGTT-----T---------------------------------ATTTTC----- |
| droWil1 | scaffold_181096:5834838-5834931 + | AGAGACAGA--------GAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAAGAGTGGTGAGTGGTGGAAGGGGGTGGG-GGCCAAT----------------------------A-----------------TTGTGCTAGTGCTGAAT--------------------------------------------------------------------------------- |
| droVir3 | scaffold_12963:19208738-19208883 + | TTAGTAAGA--------GAGAGAGAGAGAGAGAGGGAGAGCCAGCGAGTA--ATAGAGAGCAC---------ATGCG-AGCATAA----------------------------A-----------------CCGGTTTGAGCGC--TCTCCGCTGGCTATGCGCGCT----CCCAGG-C-CAGCGCTCACCT--GTGTACAAGTTCAC---TTTGTTGTTGTTG----- |
| droMoj3 | scaffold_6496:13778911-13779004 + | CAACAGAGA--------CAGAGAGAGAGAGAGAGAGAGCGGGAGAGAGAGAAAGAGAGAGAGA-----GAGAGAGGGAGGCCATG----------------------------G-----------------CTGTAGCTGAGCTGCTT-----------------------------------------------------------------------------ACGT |
| droGri2 | scaffold_15110:15752678-15752830 - | AGTGAGAGA--------GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA----------------GAGAGCTGGG-CACTTGTGTCTGGGGCTGTGCTCATGCAAAAATAAATGCGAACTGTGTGCAGATCGTAA---------------AT--TA----AAGTTTCTCTCGCTC-C-----CCCTATTT-------------CTC---TGTTC--CTGTT------ |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:3902738-3902863 + | GGTTATC-------------------------------------CCTGC-CACATGGCCACGTGCCCG-CAAGACGCCTTCGGCCGGCG-------------------------------------------------------------------------------------------------------CAAAGTTTCAATTTGATATTCCTTGGC-CG-----GTCGAG--CAGCGTCTTGGGG-TTGTTCG--------TGGATTAAGTTCGATTC--------------------------CTAT |
| droSim1 | chr2R_random:1106077-1106202 + | GGATATC-------------------------------------CCTGC-CACATGGCCACGTGCCTG-CAAGACGCCTTCGGCCGGCG-------------------------------------------------------------------------------------------------------CAAAGTTTCAATTTGATATTCCTTGGC-CG-----GTCGAG--CAGCGTCTTGGGG-TTGTTCC--------TGGATTAAGTTCGATTC--------------------------CTAT |
| droSec1 | super_1:1540674-1540799 + | GGATATC-------------------------------------CCTGC-CACATGGCCACGTGCCCG-CAAGACGCCTTCGGCCGGCG-------------------------------------------------------------------------------------------------------CAAAGTTTCAATTTGATATTCCTTGGC-CG-----GTCGAG--CAGCGTCTTGGGG-TTGTTCC--------TGGATTAAGTTCGATTC--------------------------CTAT |
| droYak2 | chr2L:16559915-16560042 + | GGATATC-------------------------------------CCTGC-CACATGGCCACGTGCCTG-CAAGACGCCTTCGACCGGCG-------------------------------------------------------------------------------------------------------CAAAGTTTCAATTTGATATTCCTTGGC-CG-----AACGAACGGAGCGTCTTGGGG-TTGTTTC--------GGGATTACGTTCGATTC--------------------------CGAT |
| droEre2 | scaffold_4929:18723379-18723500 - | GGATA-C-------------------------------------CCAGC-CACATGGCCACGTGCCTG-CAAGACGCCTTCGGCCGGCG-------------------------------------------------------------------------------------------------------CAAAGTTTCAATTTGATATTCCTTGGC-CG-----GTC-----GAGCGTCTTGGGG-TTGTTTC--------GGGATTGAGTTCGATTC--------------------------CGAT |
| droAna3 | scaffold_13266:16222514-16222662 + | GGAGATC-------------------------------------CTTG--CGTGTGGCCACGTGCCGGGTGAGACGCCTTCGGCCGGTA-------------------------------------------------------------------------------------------------------CAAAGTTTCAATTTGATATTCCTTTGGAGTTGCCTTCGGAGTTGAGCGTCTTGGGG-TTGTTCC--GGGCCATGGATTAAGTTG-----AGAAA-ATG------CAG----A-CTATGT |
| dp4 | chr3:5536552-5536721 + | GGTTG-C---------G------------CTGCTGCTTATGGTG----CTGGTGTTGCCACGTGCC-A-CAAGACGCCTTCATCTGGCGGTT------------------------------------------------------------------------------------------GGT-CTGGACAAAAGTTTCAATTTGATATTCCTTTGC-CT-----T--GCC--GAGCGTCTTGGGG-TTGTTTC--AGGGCATGGATTAAGTTT---TCAGGCAACTGGAGCAGCA------TCCGTGC |
| droPer1 | super_2:5730715-5730884 + | GGTTG-C---------G------------CTGCTGCTTATGGTG----CTGGTGTTGCCACGTGCC-A-CAAGACGCCTTCATCTGGCGGTT------------------------------------------------------------------------------------------GGT-CTGGACAAAAGTTTCAATTTGATATTCCTTTGC-CT-----T--GCC--GAGCGTCTTGGGG-TTGTTTC--AGGGCATGGATTAAGTTT---TCAGGCAACTGGAGCAGCA------TCCGTGC |
| droWil1 | scaffold_181141:2380508-2380690 - | ACCCATTTCTGGTCTCG------------GTCTCAATTTTTTTA----CTGGTGTGGCCACGTGCCA--TACGAG-----------------------------------------------------------------------------------TA-GTAAGGTCTTGCA-ACAGGGCGGT-GCGAACAAAAGTTTCAATTTGATATTCCCTTGC-CTTGACTTGGCCG--TAGCGTCTTAGGG-ATGTTTCC-GAAGCAAGGATTAAGTTT---TCAAA----G------GCAG------CTGTGC |
| droVir3 | scaffold_12875:14800808-14801017 + | GCTTCTTTG------------------------TGTCCATGGCCCTTGC-CGTGTGGCCACGTGCCA--TCAGACGCCTTCGCGCAGT---TTGACTC--------------------------------------------TGGAATGGCTGAGGGCTG-GTGGGG---CGGA-ACGGGGCAGCGGGGATTGACAGTTTCAATTTGCAAGCATGTTGC-CT-----TTTGTA--GAACGTCTTGGGGGTTGTTCGCCAGCTGACGGATTAAGTTT---TGAGGGC-A----------GCCAGATGCTGCT |
| droMoj3 | scaffold_6496:7113415-7113501 - | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGTTTCAATTTGCAAGCTTGTTGC-CT-----TTTACG--GAACGTCTTGGGG-TGTCTGA--------GGGATTAAGTTTAAGTCTGGGC-AT---------GCCAG--C--TGC |
| droGri2 | scaffold_15245:14811478-14811742 + | GTTTCTTTGTG-TCCAGACCCTTGCCGCCTTGCCGC--------CTTGC-CGTGTGGCCACGTGCCAGCAGAGACGCCTTCGCGCTCA---CTGACTCGTCCCGGCCCGGCAATTGTCAGAGACGCAGATGACTGTTGCGAATAGGTTGGCAGGGGGGGGAGT-CGG---CGGACAGGGGGAAGGGGTGGTTGACAGTTTCAATTTGCAAGCTTGTTGC-CT-----TTTGCA--GAACGTCTTGGGG-TTGTTTC--AGCTGGCGGATTAAGGTT---TCAGACAG-T-------CAGCC-------AGC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:14607658-14607807 + | TTTT-GAGTCGAAAGGACC--A----------------ACT-TTGCTGGCATTCGGTGGCCAA--------------TAATGCAATTGCATGTC-------------------------------------------------------CTTGTTGCTGTTGCAAT----GTTG-------CAGCTGGAATTGCAATTGCATTTCTAGTTGC------------------CGCTGCTG---------CTGCTCGAGTGGCAATTA--GCTGGGTGTCTC |
| droSim1 | chr2R:13317686-13317836 + | TTTTCGAGTCGAAAGGACC--A----------------ACT-TTGCTGGCATTCGCTGGCCAA--------------TAATGCAATTGCGTGTC-------------------------------------------------------CTTGTTGCTGTTGCAAT----GTTG-------CAGCTGGAATTGCAATTGCATTTCTAGTTGC------------------CGCTGCTG---------CTGCTCGAGTGGCAATTA--GCTGGGTGTCTC |
| droSec1 | super_1:12115359-12115508 + | TTTC-GAATCGAAAGGACC--A----------------ACT-TTGCTGGCATTCGCTGGCCAA--------------TAATGCAATTGCATGTC-------------------------------------------------------CTTGTTGCAGTTGCAAT----GTTG-------CAGCTGGAATTGCAATTGCATTTCTAGTTGC------------------CGCTGCTG---------CTGCTCGAGTGGCAATTA--GCTGGGTGTCTC |
| droYak2 | chr2R:14591968-14592144 - | TTTTCGGGTCGAAAGGACC--A----------------ACTTTTGTTGGCATTCGCTGGCCAA--------------TAATGCAATTGCGTGTC-------------------------------------------------------CTTGTTGCTGTTGCAAT----GTTGCAACTTGCAACTGGAATTGCAATTGCATTTCTAGTTGCTTCTCCTCTTTTTCCTGCTGCTCCTA---------CTCCTCGAGTGGCAATTA--GCTGGGTGTCTC |
| droEre2 | scaffold_4845:8798992-8799150 + | TTTC-GCGTCGAAAGGACC--A----------------ACT-TTGCTGGCACTCGCTGGCCAA--------------TAATGCAATTGCGTGTC-------------------------------------------------------ATTGTTGCTGTTGCAAT----GTTG-------CAACTGGAATTGCAATTGCATTTCTAGTTGCTCCTCA---------TGCTGCTGCTG---------CTCCTCGAGTGGCAATTA--GCTGGGTGTCTC |
| droAna3 | scaffold_13334:1368045-1368196 + | TTTT-GAGCTGCAG-----------------------------------------------------------------------------------------------TTGCAGATAAAGTTACAGTTGTTGTTGCTACTTTCACGTTGTTGTTGTTGTTGT--T----GCGG-------CAGCTGCAGTTGCAGTTGCAGTTGCAATTGT------------------TGCTGCAGCTGTTGGCCTAATGAGAGTGGCCAGCAATGCGGCACGAATC |
| dp4 | chrXL_group3a:862470-862596 - | ---------------------A----------------ACT-CTGCTGCCAGTAGTTGGCCAT--------------TGAGAAAATTGTGTGCCCTGGAATTTAATTCATTGCAAACAAA-------TTGCT-----------------GCTGCTGCTGCTGC----------------------------------TGCTGCTGTTGTTGC------------------TGCTGCTG---------CCGTTGCAGTGGCAATT--------------- |
| droPer1 | super_15:2034074-2034206 + | ---------------------A----------------ACT-CTGCTGCCAGTAGTTGGCCAT--------------TGAGAAAATTGTGTGCCCTGGAATTTAATTCATTGCAAACAAA-------T-----------------------TGCTGCTG----------------------CTGCCGCTGCTGCTGTTGTTGTTGTGGTTGC------------------TGCTGCTG---------CCGTTGCAGTGGCAATT--------------- |
| droWil1 | scaffold_181096:6674642-6674780 + | CTTG-GTGCCGTAT----CAAAGCTGGCATATAGTTCAACT-TCT------T-CATCGG----TGGCATCA------CGTTGCAGTTGT-TGTT-------------------------------------------------------GTTGTTGTTGTTGC-------------------------------TGTTGCAGCTGTTGTTGTTGCTGTTGTTGTTGCTGCAGCTGCTG---------CTGCTCAAGTG--------------------- |
| droVir3 | scaffold_12822:1548557-1548661 - | TGTT-------------------------------------------------------------------------------------------------------------------------------------------------GCTGCTGCTGTTGCAATTGTTGCTG-------CAGCTGTTGTTGCTGTTGCAGCTGCAGCTGTAACTGT---------TGCTGC---TG------CTGGGCATAGAGCTGCTCCTG--GT--AGTGCTTG |
| droMoj3 | scaffold_6540:8945968-8946087 + | AGCC------AGCATCGAC--A----------------ACT-TGGCTGCAATTCAGGT-------------TGCAGCTACTGCTGTTGCCTGTT------------------------------------------------G------CCTGTTGCCGTTGCC------GTTG-------CTGCTGCAGTTGCAGTTGCAGTTGTAGTTAC------------------CGTTGCAA---------TTGC---------------------------- |
| droGri2 | scaffold_15245:16288597-16288735 + | TGTT-G-----------TC--A----------------GCG-TTGTCGTTG--TGCTTGTTGA--------------TTTTCCAGTTGCT-----------------------------------------------------------GCTGTTGCTGTTGCAGTTGCAGTTG-------CAGCTGTTGCTGCTGTTGCAGTTGCAGTTGTTGCTGC---------TGCTGC---TG------TTGTTGTTGGTGTT---------GTCGGTGGTGTC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:15524903-15525041 + | AA--CACATCTGCCCGCTGG-CTGGCTG------T---------CTTGACCCACTTGCT---CG---TTTGCA------TT-TCT--GAAAAATGT--ATACGCAA-----AAACCAAAATCAGAAATTCTTTTGA-GCAAG----TGTGTCATGAAATTGCC-ATTCGTTTCTGCTCTATAT-------------AC |
| droSim1 | chr2R:14228631-14228769 + | AA--CACATCTGCCCGCTGG-CTGGCTG------T---------CTTGACCCACTTGCT---CG---TTTGCA------TT-TCT--GAAAAATGT--ATACGCAA-----AAACCAAAATCAGAAATTCTTTTGA-GCAAG----TGTGTCATGAAATTGCC-ATTCGTTTCTGCTCTATAT-------------AC |
| droSec1 | super_1:13039564-13039702 + | AA--CACATCTGCCCGCTGG-CTGGCTG------T---------CTTGACCCACTTGCT---TG---TTTGCA------TT-TCT--GAAAAATGT--ATACGCAA-----AAACCAAAATCAGAAATTCTTTTGA-GCAAG----TGTGTCATGAAATTGCC-ATTCGTTTCTGCTCTATAT-------------AC |
| droYak2 | chr2R:13649050-13649195 - | AA--CACATCTGCCCGCTGG-CTGGCTG------T---------CTTGACCCACTTGCT---CG---TTTGCATTTGTATTTTCT--GAAAAATGT--ATACGCAA-----AAACCAAAATCAGAAATTCTTTTGA-GCAAG----TGTGTCATGAAATTGCC-ATTCGTTTCTGCTCTATAT-------------AC |
| droEre2 | scaffold_4845:9723500-9723642 + | AA--CACATCTGCCCGCTGG-CTGGCTGGCTG--T---------CTTGACCCACTTGCT---CG---CTTGCA------TT-GCT--GAAAAATGT--ATACGCAA-----AAACCAAAATCAGAAATTCCTTTGA-GCAAG----TGTGTCATGAAATTGCC-ATTCGTTTCTGCTCTATAT-------------AC |
| droAna3 | scaffold_13266:9754397-9754555 - | AAAACACAAACGCCCGCTGG-----CTG------T---------CTTGACCCACTTGCT---TG---TTTGCA------TT-TCTCGCAAAAATATTCATATGCAAGACCAAAATCAGAATCAGAAATTCTTTTGG-GCAAG----TGTGTCATGAAATTGCC-ATTCGTTTCTGCTCTCTATATGTACATCTAGTAC |
| dp4 | chr3:12652733-12652881 + | AA--CACGTCTCTCCGTTTGTCAGTCTTTCAGTCTGTCAGCATGCTTGACCCACTTGATGTGCT---TTTGAA------TT-TTA--GAAATATGT---------------AAATCAAATTCTGAAACATTTCGGGGACAAGTTTATGTGTCATTAAATTCCCCA----ATTTTATACTAAA---------------- |
| droPer1 | super_2:8929657-8929759 - | AA--CACTTCTCTCCGTTTGTCAGTCTTTCAGTCTGTCAGCATGCTTGACCCACTTGATGTGCT---TTTGAA------TT-TTA--GAAATATGT---------------AAATCAAATTCTGAAACATTT------------------------------------------------------------------ |
| droWil1 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| droVir3 | scaffold_12875:4153222-4153295 - | AA--CACTTTTGAGTGCCAG-CTTTCTG------A---------GCATATC-AAACGCT---CGACATTTGTC------TT-TTT--GAGGGGGGT--TCTCGCAC-----A-------------------------------------------------------------------------------------- |
| droMoj3 | scaffold_6496:20896701-20896727 + | AA--CACTTTTGACTGCTGC-CAGCCTG------C---------C--------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droGri2 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:8141524-8141677 - | TTAAAATAGT-------------------------------------------CTCAACTTCG---------------C--TCGAGGTGTGAAAACCT--------------TTTGG----CCA--GCGA----A----TAC--GCCTCGGAT--------------CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----GGCCAAATGACACGTTCGCCATGT----T-------------------------------------TTGCGGCCAA-------------------------------------------------------GTGCTTTC----------ATT |
| droSim1 | chr2L:7922185-7922338 - | TTAAAATAGT-------------------------------------------CTCCACTCCG---------------C--TCGAGGTGTGAAAACCT--------------TTTGG----CCA--GCGA----A----TGC--GCCTCGGAT--------------CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----GGCCAAATGACACGTTCGCCATGT----T-------------------------------------TTGCGGCCAA-------------------------------------------------------GTGCTTTC----------ATT |
| droSec1 | super_3:3638638-3638791 - | TTAAAATAGT-------------------------------------------CTCCACTCCG---------------C--TCGAGGTGTGAAAACCT--------------TTTGG----CCA--GCGA----A----TAC--GCCTCGGAT--------------CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----GGCCAAATGACACGTTCGCCATGT----T-------------------------------------TTGCGGCCAA-------------------------------------------------------GTGCTTTC----------ATT |
| droYak2 | chr2L:10772572-10772720 - | TTAAAATAGT-------------------------------------------CTCGAG----------------------ACGAGGTGTGAAAACCT--------------TTTGG----CCG--GCAA----A----TAC--GCCTCGGAT--------------CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----GGCCAAATGACACGTTTGCCATGT----T-------------------------------------TTGCGGCCAT-------------------------------------------------------GTGCTTTC----------ATT |
| droEre2 | scaffold_4929:17047208-17047355 - | TTAAAATAGT-------------------------------------------CTCTAC----------------------TCGAGGTGTGAAAACCT--------------T-TGG----CCA--GCAA----A----TAC--GCCTCGGAT--------------CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----GGCCAAATGACACGTTTGCCATGT----T-------------------------------------TTGCTGCCAT-------------------------------------------------------GTGCTTTC----------ATT |
| droAna3 | scaffold_12916:9486383-9486598 - | TTTAAATAGT-------------------------------------------CTCTCG---------AGGGTC----T--TCGGGGTGTGAAAACCT--------------TTCGGTTAGCCA--GCCA---GCGA--GAC---ACTTAACTCACTTCGTGGCTTCCAAATCACGTTTCAAGATCGAGGTAAATTCTTTGACGTATTCGCT-----GGCGAAATGGCACGTCTGACATGG----AATGGCATGGCATGAGATGGGCATGGTATGGTTGGTTGGTGCGACTAA---------------------------------------------------ATA-ATGGTTTC----------ATT |
| dp4 | chr4_group3:2877715-2877892 + | TTAAAATAGTTGCAGCCCACAA-------GTCACATGCCGCCGCCGGCGCATT--GGACAT--------------------TGGAGGTGTGAAAACCA--------------AT--------------------A----TTC--GCTTCAGGT--------------CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----TGGCAAATGACACGTTTTGG---------------------------------------------------------------------------------ACCTGCAATTTCCAGCAT------------TTACTTTC----------ATT |
| droPer1 | gnl|ti|733036400:69-254 + | TTAAAATAGTTGCAGCCCACAAGTCACAAGTCACATGCCGCCGCCGGCGCATT--GGACAT--------------------TGGAGGTGTGAAAACCA--------------AT--------------------A----TTC--GCTTCAGGT--------------CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----TGGCAAATGACACGTTTTGG---------------------------------------------------------------------------------ACCTGCAATTTCCAGCAT------------TTACTTTC----------ATT |
| droWil1 | scaffold_180703:2787401-2787579 - | TCT-----------------------------------CTCCACCAACATAATATGGA------------------------CAAGGTGTTAAGGTCT------------CTTTTGG----ATG--GTAGTCAGT----TGC--TAGTTAACT--------------CAAATCACGTTTCAAGATCGAGGTGAATTCTTTGA-ATACTGTCA-----AGCGAAATGACACGTTTT----GT----C-------------------------------------TTA--------------------------------ACCCGCACCGGCCGGCCCCCACTTACATAGATATTTTT----------AGT |
| droVir3 | scaffold_12963:13862249-13862454 + | TTAAAGCGGC-------------------------------------------TTCAA------------------------CAAGGTGTTAAAATCG------------C-AAAGG----CCGTCACAG----CCA--CAG--TCCACAGTC--------------CGAATCACGTTTTAAGATCGAGGTGAATTCTT-AACACCGCCGCTTGCCCAGCCAAATGGCACGTTTTCAATGG----GCTGG----------------------------------------CAGCAGCCCCAAGCCCTCAGCCAGCTTCATCTGCAATTGCGACGAC------------TTTCTTTCTGGCCCAACGAAC |
| droMoj3 | scaffold_6500:5788118-5788309 - | TTGGAATACTTG--------------------------------------------AACACTGGTTACAGCGGCTAC---AACAAGGTGTTAAAAACAGAAAAAAGCGAACCAAAGG----CCG--GCACACAGCCACACAG--TCCACAGTT--------------CGAATCACGTTTTAAGATCGAGGTGAATTCTTA-CTACCGACGCTCAGCCAGCCAAATGGCACGTTTGCCATGG----C-------------------------------------AT-CGCTCAA-------------------------------------------------------CAGCTTTA----------AGC |
| droGri2 | scaffold_15126:6028218-6028422 - | TTTGAATACTTG--------------------------------------------AACACTGGTTACACCGACTTCAGCAACTAGGTGTTAAAGCCA------------CCAAAGG----CCT-TGCAG----A----CACAGTTCACAGTC--------------CGAATCACGTTTTATGATCGAGGTGAATTCTTTGGTAGAGCCGCTTACCCAGCCAAATGGCACGTTTGCTAAGCATGGACAG----------------------------------AT-C-CCCAAGAGCCCCAAGCTCTAAGCCA-----------------------------------GTTCCATC----------ATC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:20181738-20181869 + | ATAAAAAGTATGTCACT------------------T-GGGG-GCGCTGCACT---------GGCATTGAAA-AGTGAA------TTACATTGATCGTGACATGGGAATGGAAAATGTCGCCG-----------------------------------------------------------------------------------------------------------------------------------------------AGCCATGTAAATCGTTTGGCCTACCCGTCTACCA-GCCAACC----AACCA |
| droSim1 | chr2R:18643325-18643449 + | ATAAAAAGTATGTCACT---------------TGGTG-GGG-GCGCTGCACT---------GGCATTGAAA-AGTGAA------TTACATTGATCGTGACATGGGGATGGAAAATGCCGCCG-----------------------------------------------------------------------------------------------------------------------------------------------AGCCATGTAAATCGATTG---------AAGGCC-C-GTGGCC----AACCA |
| droSec1 | super_23:61187-61303 + | ATAAAAAGTATGTCACT---------------TGGTG-GGG-GCGCTGCACT---------GGCATTGAAA-AGTGAA------TTACATTGATCGTGACATGGGGATGGAAAATGTCGCCG-----------------------------------------------------------------------------------------------------------------------------------------------AGCCATGTAAATCGATTG---------AAGGCC-C-GTG------------ |
| droYak2 | chr2R:20147877-20148015 + | ATAAAAAGTATGTCACT------------------G-GGGG-GCGCTGCACT---------GGCACTGAAA-AGTGAA------TTACATTGATCGTGACATGGGGATGCGAAATGTCGCCAAACGAAAAA----ATAAATCA----------------------------------------------------TAG------------------------------------------------------------------------TGTAACTCGTTTG---------AAGGCCACACCAACT----AGTAA |
| droEre2 | scaffold_4845:21546843-21546980 + | ATAAAAAGTATGTCACT---------------A----GGGGGCTTCTGCACT---------GGCATTGAAA-AGTGAA------TTACATTGATCGTGACATGGGGATGGAAAATGTCGCCGCACAAAAAA--------AGTG----------------------------------------------------TAG------------------------------------------------------------------------TGTAAATCGTTTG---------AAGGCC-C-ATGGCCAACCAACCG |
| droAna3 | scaffold_13266:14229911-14230049 - | AAAAAAAGTATGTCACA---------------C--TG-GGG-GAACTGCACT---------GACATTGAAAAACTGAA------TTACATTGGACGGTGGATGGG-------------------------------------------TGGACTGATGGACTGATGGACTGACAGCCA-------------------------------------------------------CGATCATC--------ACTAGCGTCGCAGTTAAGTTATGTAA-------------------------------------ACCG |
| dp4 | chr3:18492568-18492741 - | GTAAAAAGTATGTCAGAGAAGAGAAGAGAACACAGTGGGCG-CTGCTGCACT---------GACATTGAAA-AGTGAA------TTGCATTGATCATGACGGGGGGTTGA-------CGCTG-------------------------------------------------ACTGCCACGAACCGCTCAGAACAATAGTGTAAATGTGGAATAATGCTCG--------------------------------------------------TAGAAC-CCATTC---------G----CA-GTCCATG----GGCTG |
| droPer1 | super_45:328754-328870 - | GTGAAATGTATTTGAAA---------------------------------CG---------AGTAACGGAA-ATTGCA------TTATTTCAATTACAAA-----------------------------------TCCAATGAGAGGGAGAGGG-------ACAGGGA----C---------------------------------------------AGGG-------------------------------------------ACCCAGCACAA-----------CCCTAGGAGCCA-GCCAGCC----AGCCA |
| droWil1 | scaffold_180949:4063354-4063494 - | ATTGAGGGCGTGATTTA------------------TG-CCC-GATCTACCCC---------ATCATTTAAT-GTTAAAGACAATGCTAATTGGCCATTAAAATAGGCCG-----------CA------------------------ACAGACAC-------AAATAGT----T---------------------------------------------TGGGACCTA------AAATCAAA-------------------------------------------GCCAACCGACCACCA-GCCAACC----AGCCA |
| droVir3 | scaffold_12875:7276052-7276211 + | GG----------------------------------------GCGCTGCATTTGCCAGGCCAGAGTTAAAA-AGTGAA------TTGAATTGGCCGCTTGATTGA-------------------------------------------CAG-CCGACGGGCTGA-------------------------------------ATATGTGCAGCAATGCCAACAAATCGATGCCAAAGTCAGTGTCAGTCCCACGTAATCGACAATCAGTTATTTAC-----------------------A-TACGAGC----CACAA |
| droMoj3 | scaffold_6473:1699609-1699741 - | ATAATCTATTAGTTATT---------------TAATA-TAT-GT------------------------------CAATCATTCAGCCACTCAATCATTAA-----------------------------------GTTAATCAACGAGTAACTC-------AATCAGT----C---------------------------------------------AGTCATTCAGTGCCTCAATCGTT----------------------------------------AAGTCTTCCAATAAGTCA-CTCAATC----AGTCA |
| droGri2 | scaffold_15203:4626832-4626941 - | GCCCATGCCA--------------------------------------------------------TAAAA-AGAGTT------TTGAACTAATCTTAAGCAGGCAGCGCAAATCGCTATAAATCAG-CTTTCTATTCTT--------------------------------------------------------TG------------------------------------------------------------------------TT---------TTGCCCCACTGTGCACCA-GCCAGCC----AGCCA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:9726743-9726895 - | AGACTGCCAACTGGGTTC------TGCCGCTT---TTGCTGTGGCTTCTCTGCATGGGATTCCCCATTCTGCATGGCGCCGATCTCTGCCAGCCCATCGGATGGCGGAACTTCCAGTGCAGCGAGGTCGCTTCTCTGCAGGATCTGGTGGACTTGGGCG---------CCG |
| droSim1 | chr3L:9107366-9107518 - | CAACTGCCAACTGGGTTC------TGCCGCTT---TTGCTGTGGCTTCTCTGCGTGGGATTCCCCATCCTGCATGGCGCCGATCTCTGCCAGCCCATCGGCTGGCGGAACTTCCAGTGCAACGAAGTCGCCTCGCTGCAGGATCTGGTGGATTTGGGCG---------CCG |
| droSec1 | super_0:1960228-1960380 - | CAACTGCCAACTGGGTTC------TGTCGCTT---TTGCTGTGCCTTCTCTGCGTGGGATTCCCCATCCTGCATGGCGCCGATCTCTGCCAGCCCATCGGCTGGCGCAACTTCCAGTGCAACGAAGTCGCCTCGCTGCAGGATCTGGTGGACCTGGGCG---------CCG |
| droYak2 | chr3L:9698225-9698377 - | CAACTGCCAATTGGGTTC------TGCCGCTT---TTTCTGTGGCTTCTCTGCGCGGGATTCCCCAGCCTGCATGGTGCCGATCTCTGCCAGCCCATCGGCTGGCGGAACTTCCAGTGCAACGAGGTCGCTTCTCTGCAGGATCTGGTCGAATTGGGCG---------CCG |
| droEre2 | scaffold_4784:9713780-9713932 - | CAACTGCCAATTGGGTTC------TGCCGCTC---TTTCTGTGCCTTCTCTGCGCGGGATTCCCCAGCCTGCATGGAGCTGATCTCTGCCAGCCCGTCGGGTGGCGGAACTTCCAGTGCAACGAGGTCGCTTCTCTGCAGGATCTGGTCGACCTGGGCG---------CCG |
| droAna3 | scaffold_13337:3652327-3652482 + | TGCCAGTCAAATGGACTC------TGTTGCCTTGCTTTTTGTGGCTCTTCTCGAAGGGGCTTCCCTCCACAAGAGCTCAAGATCTTTGCCAGCCCCGAGGTTGGCGCAACTTCGAGTGCCTTGAAGTGGCTTCTCTGCAGGATCTAGTGGATTTGGGGG---------CCG |
| dp4 | chrXR_group6:9932877-9933023 + | TGAATGCCAATTGGGTTT------TGTCC------GCTCTGTGGCTCTGCTGCAGGGGCTTCCCCC---AGGTCGGGGCTCTTCCCTGCCGGACTCTGGCCTGGCGCAGCTTCGAGTGTCGTGAATTAGCCAGTCTGCAGGATCTGTCTGATGTGGGGG---------CCG |
| droPer1 | super_61:212952-213098 + | TGAATGCCAATTGGGTTT------TGTCC------GCTCTGTGGCTCTGCTGCAGGGGCTTCCCCC---AGGTCGGGGCTCTTCCCTGCCGGACTCTGGCCTGGCGCAGCTTCGAGTGTCGTGAATTAGCCAGTCTGCAGGATCTGTCTGATGTGGGGG---------CCG |
| droWil1 | scaffold_180949:1195301-1195459 + | CGAATTTCCAGTGGTTTT------GGCCGTTG---GCTTTATGGCTTGTATGTCGGTGCTTCCCGC---GGTGCACAGCTCAAGTCTGTAATCCCCGCGGCTGGCGTAACTACGAATGCAGCGAATTGGCTAGTCTAGAGGATTTAATAAATTCTGAAGGCTTGTCCACTG |
| droVir3 | scaffold_13049:8736379-8736540 + | CGAATGCCAAACAGTTCTGGACTTGG---TCA---GTTCTCTGGCTGCTCTGCTGGGCTGTGCCCC---GTGCGTTGGCGCAGTTGTGCGAGGCGCAGGGCTGGCGCAGCTTTGAGTGCCGCGAGCTGGGCAGCCTGCAGGAGCTGATCAATGAGAAGGCCTTGCCCACTG |
| droMoj3 | scaffold_6680:6608267-6608428 - | TGAATGCGCAACCTTTGCGCCTAGGT---CCA---GTCCTCTGGCTGCTGTGCTGCGGCCTTTCCC---AGGTGCTGAGTCAGATATGCGAGGCTCAAGGCTGGCGCAGCTTCGAGTGTCGTGAGCTGAGCAGCCTGAAGGAGCTGAAGAACGTTAGGAACTTTCCCAAAG |
| droGri2 | scaffold_15110:4482444-4482593 + | TGTTCTACACTTGG---------------CCA---ATTCTTTGCCTGCTCTGCTTTGGGTTTTGC--CCTGGAT-TGGCTGTGGTCTGTGAGGCTCAAGGCTGGCGTAGTTTTGAGTGCCGCGAATTGAGCAGCCTGCAGGAGCTGATCGATGTGAAGGCATTTCCCACCG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:10840329-10840491 - | ATCAGTCGT---CTGTTGGCGGTGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGTGCGGCACGATTCTCACAGCAGGGCTCCAGCTCGGCCAAAAAATCGGTCGTCGCCATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAGAACAAGAAGAAAATGGT------- |
| droSim1 | chr2L:10648081-10648243 - | ATCAGTCGT---CTGTTGGCGGTGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGTGCGGCACGATTCTCACAGCAGGGCTCCAGCTCGGCCAAGAAATCGGTCGTCGCCATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAGAACAAGAAGAAAATGGT------- |
| droSec1 | super_3:6258415-6258577 - | ATCAGTCGT---CTGTTGGCGGTGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGTGCGGCACGATTCTCACAGCAGGGCTCCAGCTCGGCCAAGAAATCGGTCGTCGCCATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAGAACAAGAAGAAAATGGT------- |
| droYak2 | chr2L:7248063-7248225 - | AACAGTCGT---CTGTTGGCGGTGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGTGCGGCACGATTCTCACAGCAGGGCTCCAGCTCGGCCAAGAAATCGGTCGTCGCCATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAAAACAAGAAGAAAATGAT------- |
| droEre2 | scaffold_4929:14589948-14590110 + | ACCAGTCGT---CTGTTGGTGGTGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGTGCGGCACGATTCTCACAGCAGGGCTCCAGCTCGGCCAAGAAATCGGTCGTCGCCATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAGAACAAGAAGAAAATGAT------- |
| droAna3 | scaffold_12916:14695622-14695781 - | ACCAATCGT---CCGTGGGCGGTGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGAGCGGCACGTTTCTCGCAGCAGAGCTCCGGCTCAGCCAAGAAATCTGTCGTCGCCATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAGAACAAAAAGAAGAT---------- |
| dp4 | chr4_group4:3045338-3045500 - | AACAATCGT---CTGTGGGTGGGGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGGGCGGCACGTTTCTCGCAGCAGGGCTCCGGCTCGGCTAAGAAATTTGTCGTCGCCATTGCAAGTTCGCCTTTTGGTCTCACCACGGCCAAAAACCGGAAGAAACTGAT------- |
| droPer1 | super_10:2060188-2060350 - | AACAATCGT---CTGTGGGTGGGGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGGGCGGCACGTTTCTCGCAGCAGGGCTCCGGCTCGGCTAAGAAATTTGTCGTCGCCATTGCAAGTTCGCCTTTTGGTCTCACCACGGCCAAAAACCGGAAGAAACTGAT------- |
| droWil1 | scaffold_180703:3531157-3531322 + | AACATTCGAGTAGTGTTGGCGGTGCCGTTGACGATGACTCAGCGCGTTTGCAACAGCGTGCGGCACGATTCTCTCAGCAGGGCTCTGGTTCGGCTAAGAAATCGGTCGTTGCGATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAGAATAAGAAGAAAATGTT------- |
| droVir3 | scaffold_12963:15772752-15772915 + | ATTCGTCGT---CGGTGGGCGGTGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGTGCGGCACGTTTCTCACAGTCGAGCAGCGGCTCGTCTAAGAAATCTGTCGTCGCAATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAGCACAAGAAGAGATTGCAG------ |
| droMoj3 | scaffold_6500:18770378-18770547 + | ATTCGTCGT---CGGTTGGCGGTGCTGTTGATGATGACACAGCGCGCTTGCAACAGCGTGCGGCACGTTTCTCACAGACGAGCGGTGGCTCGGCTAAGAAATCTGTCGTCGCAATTGTAAGCTCACCGTTTGGTCTCACCACGGCCAAGCACAAGAAGAGATTGCAGGCCTCG |
| droGri2 | scaffold_15126:2074135-2074298 - | ATTCGTCGT---CGGTGGGCGGTGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGTGCGGCACGTTTCTCACAGTCGAGCAGCGGCTCGGCAAAGAAATCTGTCGTCGCCATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAGCACAAGAAGAGATTGCAG------ |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:15548648-15548746 - | TTC----------AT-CGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTT----CCTAACATATCACAGTGATTTTCCTTTATAACGCATGTTTAAA---GTCCAC |
| droSim1 | chr2R:14254083-14254180 - | TTC----------AT-CGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTC----CC-AACATATCACAGTGATTTTCCTTTATATCGCATGTTAAAA---GTCCAC |
| droSec1 | super_1:13063377-13063475 - | TTC----------AT-CGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTC----CCGAACATATCACAGTGATTTTCCTTTATAACGCATGTTTAAA---GTCCAC |
| droYak2 | chr2R:13624045-13624143 + | TTT----------AA-CGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-TTC----CCTAACATATCACAGTGATTTTCCTTTATAACGCATGTACAAA---GTCCAC |
| droEre2 | scaffold_4845:9748899-9748997 - | TTT----------GA-CGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTC----CCTAACATATCACAGTGATTTTCCTTTATAACGCATGTAAAAA---GTCCAA |
| droAna3 | scaffold_13266:9731665-9731765 + | TTC----------TA-AGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-ATCC-CTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGCAG-TT---GTCCAA |
| dp4 | chr3:12677226-12677327 - | TTC----------CTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATTC-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGTCT-GC---GCCCAC |
| droPer1 | super_2:8906345-8906446 + | TTC----------CTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATTC-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGTCT-GC---GCCCAC |
| droWil1 | scaffold_180701:1651453-1651556 - | TTT----------TTCTGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTAGATTC-ACCGTTATATATCACAGTGATTTTCCTTTATAGCGCATGCAT-GTTCTGTC--C |
| droVir3 | scaffold_12875:4112452-4112549 + | TAA----------AT-TGGGTCATGCTCTAAAAGGAACGATCGTTGTGATATGCGTTC-ATTA-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----A---GCCCGT |
| droMoj3 | scaffold_6496:20936453-20936560 - | TGCAAACTCGATGAA-TGGGCCATGCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATCG-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----A---GTCCCC |
| droGri2 | scaffold_15112:2108518-2108620 - | GTC------G---TTATGGGTCACTCGCTAAAAGGAACGATCGTTGTGATATGCGTTC-ATTAAATCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGCTC--T---GCCCAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:15548493-15548604 - | AACTTAA-----------------------TCACAGCCTTTAATGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATATACC---ATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACATC----------------ATT |
| droSim1 | chr2R:14253929-14254041 - | AACTTAA-----------------------TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATATACC---ATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-GCATTTTACATC----------------ATT |
| droSec1 | super_1:13063224-13063336 - | AACTTAA-----------------------TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATATACC---ATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-GCATTTTACATC----------------ATT |
| droYak2 | chr2R:13624186-13624297 + | AGTTTAA-----------------------TCACAGCCTTTAACGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATAACAA---ATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACATC----------------ATT |
| droEre2 | scaffold_4845:9748744-9748855 - | AGCTAAA-----------------------TCGCAGCCTTTAAAGTAGAGGGAATAGTTGCCGTGCTGTAAGTTAATATATC---ATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACATC----------------ATC |
| droAna3 | scaffold_13266:9731810-9731917 + | ---------------------------------CCGCCTTTAAAGTAGAGAGAATAGTGGCTGTGCTGTAAGTTT------C--AAAATCTATATCACAGTGGCTGTTCTTTTTGCACCTAAAGTGC--CAAACAGCCAAACCCGAG------AAT |
| dp4 | chr3:12677072-12677187 - | AC-----------------------------ACCAGCCTTTGAAGTAGAGAGAATAGTTGCTGTGCTATATGTCC----TTCG-ACTCTATATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACAGCCAAG-----GAATCGCGTT |
| droPer1 | super_2:8906485-8906600 + | AC-----------------------------ACCAGCCTTTGAAGTAGAGAGAATAGTTGCTGTGCTATATGTCC----TTCG-ACTCTATATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACAGCCAAG-----GAATCGCGTT |
| droWil1 | scaffold_180701:1651298-1651414 - | T---CAA-----------------------C--CAGCCTTTAAAGTAGAGAGAATAGTTGCTGTGTTTTATGCCC----TTTT-CAATTTCATATCACAGTGGCTGTTCTTTTTGTGCCTAAAGTGC--CCCACAACAACA-----ACAACAACAC |
| droVir3 | scaffold_12875:4112589-4112722 + | GACTTAAAACTATATCGCCCAGTTATCTGTTTATAGCCTTTAAAGTAGAGAGAATAGACGCTGTGCTGTATGTTT----TGCGTATGGTCTATATCACAGTGGCTGTTCTTTTTGTACCTGAAGCGC--CGTACAAC----------------GTT |
| droMoj3 | scaffold_6496:20936294-20936412 - | TATTTATTTCTCTAGTGT-----------TTTTTCGCCTTTAAAGTAGAGAGAATAGATGCTGTG-----AGTATATCTGTT---GCATTTATATCACAGTGGCTGTTCTTTTTGTACCTAAATGGC--CAGACAGC----------------ATT |
| droGri2 | scaffold_5621:3389-3488 + | A----------------------------------GCCTTTAATGTAAAGAGAATAGATGCTGTGCTGTATGTTG----AACGTATTGTCTATATCACAGTGGCTGTTCTTTTTGTACCAAAAGTGC--CGTACAAC----------------AAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:15548359-15548462 - | TAACCA---------------------TGCCG--TTTTTAACCCAAGGGAACTTCTGCTGCTGATATATTAT-----------TGA-------------AAAA----CTACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA |
| droSim1 | chr2R:14253794-14253897 - | TAACCA---------------------TGCCG--TTTTTAACCCCAGGGAACTTCTGCTGCTGATATATTAT-----------TGA-------------AAAA----CTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA |
| droSec1 | super_1:13063092-13063195 - | TAACCA---------------------TGCCG--TTTTTAACCCCAGGGAACTTCTGCTGCTGATATATTAT-----------TGA-------------AAAA----CTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA |
| droYak2 | chr2R:13624327-13624430 + | TAACCA---------------------TACCG--TTTTTAACCGCAGGGAACCTCTGCTGCTGATATATTAT-----------TGA-------------GAAA----CTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA |
| droEre2 | scaffold_4845:9748613-9748715 - | AACCCA---------------------TACCG--TTTTTAACCCCAGGGAACCTCTGCTGCTGATATATTAT-----------TGA--------------AAA----CTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAG |
| droAna3 | scaffold_13266:9731948-9732061 + | ATATTA---------------------TTCCG--GTGTTAGCCCCAGGGAACTGTTGCTGCTGATATATTATTCTCCCAAAAA-AA-------------AAAT----CACCTATATCACAGTGGCTGTTCTTTTTGGCTGCACCGACAAG-TTCAC |
| dp4 | chr3:12676931-12677045 - | TCCCCG---------------------TGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCTTTGA---------------CA----TTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAA |
| droPer1 | super_2:8906627-8906741 + | TCCCCG---------------------TGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCTTTGA---------------CA----TTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAA |
| droWil1 | scaffold_180701:1651131-1651259 - | TTTTTA---------------------AAGTTTTTGTTTAACCGCAGGGAACTGTCGCTGCTGATATAT-----ATATATTATTGTTATATATAATTTAAAAATGATTTTCTATATCACAGTGGCTGTTCTTTTTGGTTTTACGATCATT-TTCAA |
| droVir3 | scaffold_12875:4112748-4112878 + | TAAATATTTGCTGACAAATTTCTTATGTGCTA--TGTTTAACCGCAGGGAACTGCTGCTGCTGATATACTGTATAGATTATATCGA----------------------TTCCATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAATC-CACAA |
| droMoj3 | scaffold_6496:20936121-20936236 - | TATCCA------GAGA-----------GATTG--CGTTTAACCGCAGGGAACTGCTGCTGCTGATATACTATA----TGTATTTGT---------------CA--GTACTCTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAAATAGCCAA |
| droGri2 | scaffold_15112:2108071-2108181 - | TTCACC-------------------AATGCTA--TGTTTAACCACAGGGAACTGCTGCTGCTGATATAC-----AACCATAT-TTA-------------TACA----CGACTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCCATT-TGCAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:15548206-15548315 - | AAA-----TTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTTGAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT |
| droSim1 | chr2R:14253641-14253750 - | AAA-----TTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTCGAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT |
| droSec1 | super_1:13062939-13063048 - | AAA-----TTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTCGAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT |
| droYak2 | chr2R:13624474-13624583 + | AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTCGAAACTCT----CTCAATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACAT |
| droEre2 | scaffold_4845:9748460-9748569 - | AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTCGAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGT |
| droAna3 | scaffold_13266:9732107-9732212 + | AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT----ATTCG----CATCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGT |
| dp4 | chr3:12676789-12676898 - | AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCAAGTTTTG----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCACCGA |
| droPer1 | super_2:8906774-8906883 + | AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCAAGTTTCG----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACGA |
| droWil1 | scaffold_180701:1650985-1651090 - | CAT-----TT----TTTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTATACCATTTTGTTTAACAA--TATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATCAAC-- |
| droVir3 | scaffold_12875:4112942-4113050 + | CGC-----TCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-CGACCTTTG----TACTCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTCTCAACTT |
| droMoj3 | scaffold_6496:20935943-20936057 - | AATCGTGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCGAATTCATT----TAATCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGT |
| droGri2 | scaffold_15112:2107905-2108014 - | A-C-----TCATAAATTGTTTAAAAGGAAGAGAACGCTCGCTGCTGATGTAGTTCATGATTCA----AATATTTTATATCACAGTGGCTGTTCTTTTTTGTTTATCAATGATTCAACTT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:16493557-16493674 + | GATTGGTC-CTCC-TGGGAGTGCATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTTTGGTAA---TAACAATAAATCCCTTGTCTTCTTACGGCGTGCATTTG-TGCTCTTCATTCT----------A |
| droSim1 | chr2R:15154934-15155051 + | GATTGGTC-CTCC-TGGGAGTGCATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTTTGGTAA---TAACAATAAATCCCTTGTCTTCTTACGGCGTGCATTTG-TGCTCTTCATTCT----------A |
| droSec1 | super_1:14047859-14047976 + | GATTGGTC-CTCC-TGGGAGTGCATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTTTGGTAA---TAACAATAAATCCCTTGTCTTCTTACGGCGTGCATTTG-TGCTCTTCATTCT----------A |
| droYak2 | chr2R:12702727-12702844 - | GACTGGTC-CTCC-TGGGAGTGCATTTCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTTTGGTAA---TAACAATAAATCCCTTGTCTTCTTACGGCGTGCATTTG-TGCTCTTCATTCT----------A |
| droEre2 | scaffold_4845:10640174-10640291 + | GATTGGTC-CTCC-TGGGAGTGTATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTTTGGTAA---TAACAATAAATCCCTTGTCTTCTTACGGCGTGCATTTG-TGCTCTTCATTCT----------A |
| droAna3 | scaffold_13266:4109353-4109468 - | TGGGAGTC-CT-G-TGGAAGTGCATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTTTATGGTAA---TAACAATAAATCCCTTGTCTTCTTACGGCGTGCATTCG--GCTCATCACTCT----------A |
| dp4 | chr3:8655644-8655762 - | GATTGGCCTCTCC-TGGGAGTGTATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTCTGCTAA---TAACAATAAATCCCTTGTCTTCTTACGGCGTGCATCTG-TGCTCTTCATTCT----------A |
| droPer1 | super_4:2540080-2540198 - | GATTGGCCTCTCC-TGGGAGTGTATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTCTGCTAA---TAACAATAAATCCCTTGTCTTCTTACGGCGTGCATCTG-TGCTCTTCATTCT----------A |
| droWil1 | scaffold_180700:3423572-3423692 - | AAATTGTGTGTGG-T-GGAATGCATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTTTAATAAAATTAACAATAAATCCCTTGTCTTCTTATGGCGTGTATTTAAAGCTCTTCATT-T----------G |
| droVir3 | scaffold_12823:2295157-2295274 - | G--TCGT-----C-TCCAAATGCTTTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTCTGCTAA---TAACAATAAATCCCTTGTCTTCTTATGGCGCGCAT-TC-TGCTCTTCATTTATAATA--A-TT |
| droMoj3 | scaffold_6496:1650020-1650148 - | TAACCGTTCGTCGTATCGAGTGCTTGCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTCTGCTAA---TAACAATAAATCCCTTGTCTTCTTATGGCTCGCAT-TG-AGCTCTTCATTTCAAATCTCGTTA |
| droGri2 | scaffold_15245:15782213-15782323 + | GTTT-------------AAATGCATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTTTGTTAA---TAACAATAAATCCCTTGTCTCCTAACGGCGCGCAT-TG-TGCTCTTCATTAT----TTC-TTA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:16698539-16698665 + | AT---GAGTGCCT----TAGAGTGAAG--------------------------CTGACTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCTTCTGCAGGTCAA-TCGTCA----------GAAACA----AT |
| droSim1 | wck39a12.g1:600-726 - | AT---GAGTGCGT----CAGAGTGTAG--------------------------CTGACTTACCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCTTGTGCAGATCAA-TCGTCA----------GAAACA----A- |
| droSec1 | super_7:345550-345676 + | AT---GAGTGCCT----CAGAGTGTAG--------------------------CTGACTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCTTGTGCAGATCAA-TCGTCA----------GAAACA----AA |
| droYak2 | chr2R:4404406-4404531 - | AT---AAGTGAAT---TGAGAGTGTAG--------------------------CTGCCTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTATACTACTTCATAAAGCTAGATTACCAAAGCATTGGCTTCTGCAGATCAA-TCATCA------------GACA----AA |
| droEre2 | scaffold_4845:19768185-19768311 + | AT---AAGTGACT----TAGAGTGCAG--------------------------CTGCCTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCTTCTGCAGATCAA-TCTTCA----------GAAAGA----AA |
| droAna3 | scaffold_12916:15864702-15864823 - | TA---TAGTGTTC----TA-----TAG--------------------------CTGCTTAACCGATGCTTTGGCGCTTTAGCTGTATGATAGATTTAAA-TACTTCATAAAGCTAGATTACCAAAGCATTGGCTTCCGCAGGCCTG-TCTTCAA---------GGAATA----AA |
| dp4 | chr4_group3:8443957-8444103 + | GA---AAGTGTTT----AAAAGTACAACAATCTAATCTGTGCTTAA----GCCCTGCTCTGCTTCTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAAATACTTCATAAAGCTAGATTACCAAAGCATTGGCTC-TGTGGAAACT-TCATCC-----------AAACA----AT |
| droPer1 | super_1:9895076-9895222 + | GA---AAGTGTTT----AAAAGTACGACAATCTAATCTGTGCTTAA----GCCCTGCTCTGCTTCTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAAATACTTCATAAAGCTAGATTACCAAAGCATTGGCTC-TGTGGAAACT-TCATCC-----------AAACA----AT |
| droWil1 | scaffold_181061:28846-28963 - | GT---AAT-------------GGATAA--------------------------TGGTCTTGCCTATGCTTTGGCGCTTTAGCTGTATGATAGATTTGA-CTACTTCATAAAGCTAGATTACCAAAGCATGGGCTCTGGCTGA--CT-TAATCA-----------ACGCAAGTGTT |
| droVir3 | scaffold_12963:12863019-12863151 - | AT---AGCC---AGGATTAGA-TGAA-------------------------CGCCGCACTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTGAA-TACTTCATAAAGCTAGATTACCAAAGCATTGGCTC-TGTGGC-CAGCTTAGCA---AAGTTGTGAAACG----AT |
| droMoj3 | scaffold_6500:7202098-7202247 + | A------GTGTCT----TGTAATGTAA-------ACGTGTTTTTAAATATTCGCCCCATTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAA-TACTTCATAAAGCTAGATTACCAAAGCATTGGCTC-TGTGG-CCAA-ACCCCAGCGAACTTGTGAAATA----AT |
| droGri2 | scaffold_14978:831072-831198 + | ATTTAAAGTGCTT----CTTCTTGGTG--------------------------CCACATTGCCGTCGCTTTGGCGCTTTAGCTGTATGATAGATTTGAA-TACTTCATAAAGCTAGATTACCAAAGCATCGGCGCCTGTGGC-CA--GCTTAA----------CAAACG----TT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:12718922-12719038 + | A-----------------------------------------TCT-----------------------------TGCTAA---------TTAGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATCCT------TT-TTATAACTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTAACCTTCAGTAC-CAC--- |
| droSim1 | chr2R:11454608-11454724 + | A-----------------------------------------TCT-----------------------------TGCTAA---------TTAGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATCCT------TT-TTATAACTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTAACCTTCAGTAC-CAC--- |
| droSec1 | super_1:10223793-10223909 + | A-----------------------------------------TCT-----------------------------TGCTAA---------TTAGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATCCT------TT-TTAAAACTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTAACCTTCAGTAC-CAC--- |
| droYak2 | chr2R:16257218-16257334 - | A-----------------------------------------TCT-----------------------------TGCTAA---------TTAGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATCCT------TT-TTATAACTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTAACCTTCAGTAG-CAC--- |
| droEre2 | scaffold_4845:13131118-13131232 - | G-----------------------------------------TCT-----------------------------TGCTAA---------TTAGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATCCT------TT-TTATAACTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTAACCTTCAGTAC-C----- |
| droAna3 | scaffold_13266:13876642-13876748 - | A-----------------------------------------TCT-----------------------------TGCTTA---------TTTGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATCCT------TTCTGATAACTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTAACC--------------- |
| dp4 | Unknown_singleton_1898:47537-47693 - | AAATAACAAAAGAGGGAAACACAGTGCGGTGACGAAAACACGTTT-----------------------------TGCT-A---------TTCGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATCCT------TT-AGATACCTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTATCCATCATAAAT-CC--- |
| droPer1 | super_4:6545710-6545866 + | AAATAACAAAAGAGGGAAACACAGTGCGGTGACGAAAACACGTTT-----------------------------TGCT-A---------TTCGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATCCT------TT-AGATACCTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTATCCATCATAAAT-CC--- |
| droWil1 | scaffold_180700:6381462-6381593 + | C-----------------------------------------GCT-----------------------------TGCAAAAAGATTCTTCTTGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATTTT-GTACTAT-AGATATCTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTATCCATCATAAATCAT--- |
| droVir3 | scaffold_12875:10672387-10672513 - | A-----------------------------------------TCT----------------GTTTGCTTGCAATTACTTA---------TTTGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATTCTTGA--TTT-AAATAATTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTATACATCA----------- |
| droMoj3 | scaffold_6496:16285321-16285444 + | C-----------------------------------------AAT-----------------------------TGCCTA---------TTTGCTAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATTCCTGT--TTT-AAATAACTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTTTCCATCATAAAT-GCAAT |
| droGri2 | scaffold_15245:3783124-3783258 - | A-----------------------------------------TTTTTATGTGAAATAATCAATT----------TGCT-------------TGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATTCTTGA--TTT-AAATAATTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTATCCATCATAAAT--C--- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:9950403-9950531 - | CCAAAGT---------CCTTT--GGCAACACATTTCATTCGCGCCTGTATCTTGCTGAACCGCTGCC-ATTATGGCCAACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATC----GGAGAATTT |
| droSim1 | chr2L:9739846-9739974 - | CTTAAGT---------CCTTT--GGCGGCACATTTCATTCGCGCCTGTATCTTGCTGAACCGCTGCC-ATCATGGCCAACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATC----GGAGGATTT |
| droSec1 | super_3:5397127-5397255 - | ACCAAGT---------CCTTT--GGCGGCACATTTCATTCGCGCCTGTATCTTGCTGAACCGCTGCC-ATCATGGCCAACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATC----GGAGGATTT |
| droYak2 | chr2L:12640967-12641095 - | TCCAAGT---------CCTTT--GGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTTACA-ATTATGGTCTTCG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTTAGCATTCATC----GGAGGATTT |
| droEre2 | scaffold_4929:10570531-10570659 - | CACGAGT---------CCTTT--GGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTTGCC-ATTATGGCCTACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTTAGCATTCATC----GGACGATTT |
| droAna3 | scaffold_12916:13789760-13789886 - | TG--AAT---------CCTTTCAAGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTTACC-GATATGGCACAGA-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC----AAAAGAT-- |
| dp4 | chr4_group3:220105-220226 + | TCCTAC----------CGTGT--GCTGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTAGCC-ATAATGGTCTTTCATCCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC----AC------- |
| droPer1 | super_1:1694906-1695025 + | TCCTAC----------CGTGT--GCTGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTAGCC-ATAATGGTCTTTCATCCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC------------- |
| droWil1 | scaffold_180708:12250833-12250971 - | CCA--ATCAAAATTAACATTT-GGCCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTTACCAATTGTGATCTTCATTTCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTGACGGTAACATC----GTTGGAATA |
| droVir3 | scaffold_12723:3996238-3996344 + | CTA---T---------CCCTT-GGCCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTTACA-ATTGAGACATCTAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGT------------------------- |
| droMoj3 | scaffold_6500:14729857-14729979 - | -----AT---------CCTTA--GCCGGCATCTTTCATTCGCGCCTGTATCTTGCTGAACCGTTACA-ATTGTCACATCCAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTAGCGGTCTCATC----AAAGCA--- |
| droGri2 | scaffold_15252:3661296-3661426 - | TT---AT---------CCTTG--ACCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTTACC-ATTGTGACATCCAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTAGCGGCTTCATCACTTGGTGGATAG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:15859965-15860086 - | GGCAATATTAAATTGTGGTTGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATC-------------ATGTTAAAAAAAA |
| droSim1 | chrX:12269402-12269519 - | GGCCATATTAAATTGTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATC-------------ATGTTATTA---- |
| droSec1 | super_37:439539-439656 - | GGCAATATTAAATTGTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATC-------------ATGTTATTA---- |
| droYak2 | chrX:10049094-10049217 - | GGCAGTTAAAAATTGTGGGCGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTACCATTAC-------CATATTATTA---- |
| droEre2 | scaffold_4690:11188754-11188871 + | GGCAATAATAAATTGTGGGTGCTGCAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATC-------------ATATTATTA---- |
| droAna3 | scaffold_13250:3108664-3108783 + | TAA--------AAAAAGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGCA-TATGAAATTAGGCAAAGCGTTTGGATTCTGGAACCCTATGTATTCATTTTTATAATGTGTTTTCA---TAAAT---- |
| dp4 | Unknown_group_79:17437-17552 + | ATAGATAG-ATAACGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGAGTCTGCATTC-------------A--ACAAAA---- |
| droPer1 | super_192:48564-48679 + | ATAGATAG-ATAACGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGAGTCTGCATTC-------------A--ACAAAA---- |
| droWil1 | scaffold_180777:2521614-2521709 - | CACAATCTGACATTG--------GTAGCGTTTTAGAATTCCTACGCTTTACCGTCGCC-TACGAAACTCGGCAAAGCGTTTGGATTCTGAAACATTATCTCTGCA------------------------------- |
| droVir3 | scaffold_12970:3343518-3343635 - | AACTTTT---AATAATGTCCATCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTG-TCCGAAATTTGGCAAAGCGTTTGGATTCTGAAACGATATATGGTCGGTAAC-------------A--ACAAAAACAG |
| droMoj3 | scaffold_6473:7790778-7790858 - | ---------------TGGCCAGCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGCAATTTGGCAAAGCGTTTGGATTCTGAAACAATA--------------------------------------- |
| droGri2 | scaffold_15203:10526906-10527015 + | GATAGTAGTTTACCGTGACTATTGTATTGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGAAATTTGGCAAAGCGTTTGGATTCTGAAACGGTATGTGGTCAGAAAC-------------A------------ |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:121076-121193 + | TGA--C-ATGGCG---GAACCAG-------------TCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGA-CACAAC-----AGAGGAGC----A |
| droSim1 | chr3R:194547-194664 + | TGG--C-ATGGCG---CAACCAG-------------TCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAAC-----AGAGGAGC----A |
| droSec1 | super_6:240419-240536 + | TGA--C-ATGGCG---CAACCAG-------------TCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAAC-----AGAGGAGC----A |
| droYak2 | chr3R:481089-481206 + | TGA--A-ATGGCA---AAACCAG-------------TCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAACGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAAC-----ACAGGACC----A |
| droEre2 | scaffold_4770:471031-471148 + | TGA--A-GTGGCG---GAACCAG-------------TCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTC-CATAAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAAC-----ACAGGTGC----A |
| droAna3 | scaffold_13340:11127706-11127842 + | AGC--C-ACCAAC---CAACCAACCAACCAACCACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGAGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTACGTGGTGG----C |
| dp4 | chr2:24810831-24810947 - | G-A--A-GT-GCA---CGGCAA-------------TTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAAC-----AGTGGAGC----G |
| droPer1 | super_6:111437-111553 - | G-A--A-GT-GCA---CGG--G-----------ATTTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAAC-----AGTGGAGC----A |
| droWil1 | scaffold_181089:9825565-9825678 - | TGA-------------GAA---------------CTTCCTGCGGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTATATAAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAACAACAACAAC-----AAAAA-GCCACGA |
| droVir3 | scaffold_12822:1418795-1418911 + | AGGCCAAGT-GCGACGCGT--G-----------AATTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTT-CACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGACCCA-GACAAC-----GAG---------- |
| droMoj3 | scaffold_6540:34020273-34020392 + | ACA--T-AT-ACG---CTACGAG-----------TTTCCTCATGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTTTTTAACGACTCCCTAACGGAGTCAGATTGAATTTCAGAGGACCCA-GACAAC-----GAAGAAGC----G |
| droGri2 | scaffold_15074:2468173-2468294 - | TGA--AAGT-GTGCCCCCG--A-----------ACTTCCTGCTGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAGTTACAAAGGACCAA-GTCAAC-----AATGCCCC----A |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:21472213-21472337 + | TTTCAGCCGAA--------TATAAAT----------------------------------------------ATGAATTTCCCGTAGGACGGGAAGGTGTCAACGTTTTGCATTTCGAAT-AAACATTGCACTTGTCCCGGCCTATGGGCGGTTTGTAAT-----AAACA------------ACTAAAATCTA-------------T----AAA |
| droSim1 | chr3R:21300457-21300581 + | TTTCAGCCGAA--------TAAAAAT----------------------------------------------ATGAATTTCCCGTAGGACGGGAAGGTGTCAACGTTTTGCATTTCGAAT-AAACATTGCACTTGTCCCGGCCTATGGGCGGTTTGTAAT-----AAACA------------ACTAAAATCAA-------------T----AAA |
| droSec1 | super_13:258996-259120 + | TTTCAGCCGAA--------TAAAAAT----------------------------------------------ATGAATTTCCCGTAGGACGGGAAGGTGTCAACGTTTTGCATTTCGAAT-AAACATTGCACTTGTCCCGGCCTATGGGCGGTTTGTAAT-----AAACA------------ACTAAAATCAA-------------T----CAA |
| droYak2 | chr3R:25001360-25001484 - | TTTCGTTCGAA--------TATGAAT----------------------------------------------ATGAATTTCCCGTAGGACGGGAAGGTGTCAACGTTTTGCATTTTGAAT-AAACATTGCACTTGTCCCGGCCTATGGGCGGTTTGTAAT-----AAACA------------ACTAAAATGCA-------------T----TTT |
| droEre2 | scaffold_4820:6569995-6570123 - | TTTCGGCCGAA--------TATGAAT----------------------------------------------ATGAATTTCCCGTAGGACGGGAAGGTGTCAACGTTTTGCATTTCGAAT-AAACATTGCACTTGTCCCGGCCTATGGGCGGTTTGTAAT-----AAACA------------ACTGAAATGAA-------------TTTTATAT |
| droAna3 | scaffold_13340:3727762-3727906 + | TTTCCATCGAA--------TAT-AAT----------------------------------------------ACAAATTTCCCGTAGGACGGGAAGGTGTCAAGGTTTTGAATT-AAATT-AAACATTGCACTTGTCCCGGCCTATGGGCGGTTTGTCAA-----ACACATCGATACATATTTTTAG---AAATATTTAAAATTTGG----ATA |
| dp4 | chr2:23635253-23635419 - | CTTTA--------------------TATGCATATCCTGTAGGACAAGACTACAGTACTACTCGGAATACCATAGAGATTGCCCGTAGGACGGGAAGGTGTCAACGTTTTAAATTTTGAAC-AAACATTGCACTTGTCCCGGCCTATGGGCGGCTTGTCAT-----ACACATCGAT-CGTACAACTAG---CAA-------------C----AAA |
| droPer1 | super_3:6410293-6410459 - | CTTTA--------------------TATGCATATCCTGTAGGACAAGACTACAGTACTACTCGGAATACCATAGAGATTGCCCGTAGGACGGGAAGGTGTCAACGTTTTACATTTTGAAC-AAACATTGCACTTGTCCCGGCCTATGGGCGGCTTGTCAT-----ACACATCGAT-CGTACAACTAG---CAA-------------C----AAA |
| droWil1 | scaffold_181130:14578411-14578543 - | CTGTAGCCGGGTGAAACATT----ATCTGCAT----------------------------------------TCAAATTTCTCGTAGGACGGGAAGGTGTCAACGTTTTGCCTTATGAATCAAACATTGCACTTGTCCCGGCCTATGAGCGGTTTGTAAAAC----GACATC-----------CTAT---CA-------------------AAA |
| droVir3 | scaffold_12855:6880771-6880902 + | CGACAATATGG--------CTTTATC----------------------------------------------ACAAACTGCTTGCAGGACGGGAAGGTGTCAACGTTTTGCTTTATGAATCAAACATTGCACTTGTCCCGGCCTATGAGCGGTTTGTGCCACAACAAACG------------ATTGAAAATAT------------GA----AAA |
| droMoj3 | scaffold_6540:25734544-25734668 - | CTGCAAT--AC--------CCAAATC----------------------------------------------ATAAATTGCTTGCAGGACGGGAAGGTGTCAACGTTTTACCTTTTGATTCAAACATTGCACTTGTCCCGGCCTATGAGCGGTTTATCTTAC----AACA------------ATCAGGTCCAA-------------T----AGA |
| droGri2 | scaffold_14906:3023231-3023367 + | TTTTT---TAA--------TATATAT------ATTCT-TAA-AC-------------------GTGTACC--ATAAATTGCTTGCAGGACGGGAAGGTGTCAACGTTTTGCATTTTGAATCAAACATTGCACTTGTCCCGGCCTATGAGCGGTTTGTGCAT----CTACA------------ACTGGT----T-------------T----AAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:21477105-21477234 + | AGTGCAGT------GGTACATTAAA---ACGTCACCTGATGTAGGCCGTGCCCAGTGCTTATTTGTTGCATTTTCGAAATACAAATTGCACTAGTCCCGGCCTGCAATGAGTGTCGCAGTCGACGATCTACACAGTGCA |
| droSim1 | chr3R:21305387-21305516 + | AGTGCAGT------GGTACATTAAA---ACGTCACCTGATGTAGGCCGTGCCCAGTGCTTATTTGTTGCCTTTTCGAAATACAAATTGCACTAGTCCCGGCCTGCAGTGAGTGTCGCAGTCGACGATCTACACAGTGCA |
| droSec1 | super_13:263913-264042 + | AGTGCAGT------GGTACATTAAA---ACGTCACCTGATGTAGGCCGTGCCCAGTGCTTATTTGTTGCCTTTTCGAAATACAAATTGCACTAGTCCCGGCCTGCAGTGAGTGTCGCAGTCGACGATCTACACAGTGCA |
| droYak2 | chr3R:24996445-24996574 - | AGTGCAGT------GGTACATTAAA---ACGTCACCTGATGTAGGCCGTGCCCAGTGCTTATTTGTTGCCTTTTCGAAATACAAATTGCACTAGTCCCGGCCTGCAGTGAGTGTCGCAGTCAGCGATCTGCACAGTGCG |
| droEre2 | scaffold_4820:6565044-6565173 - | AGTGCAGT------GGTACATTAAA---ACGTCACCTGATGTAGGCCGTGCCCAGTGCTTATTTGTTGCCTTTTCGAAATACAAATTGCACTAGTCCCGGCCTGCAGTGAGTGTCGCAGTCAGCGATCTACACAGTGCA |
| droAna3 | scaffold_13340:3732627-3732749 + | AGTGCAGT------GAAGCATTAAA---ACGTCACCTGATGTAGGCCGTGCCCGGTGCTTATTTGTTACT-TTTGGAAATACAAATTGCACTAGTCCCGGCCTGCAGTGAGTGTCAAAGGCAGCTATCTTCAC------ |
| dp4 | chr2:23630755-23630875 - | -GTACAGT-----TGGAGCATTAAA---ACGTCACCTGATGTAGGCCGTGCCCAGTGCTTATTTGTCGTTGTTTGAAAATACAAATTGCACTAGTCCCGGCCTGCAGAGAGTGTCGCACACAACGAGCT---------- |
| droPer1 | super_3:6405653-6405778 - | AGTGCAGTACAGTTGGAGCATTAAA---ACGTCACCTGATGTAGGCCGTGCCCAGTGCTTATTTGTCGTTGTTTGAAAATACAAATTGCACTAGTCCCGGCCTGCAGAGAGTGTCGCACACAACGAGCT---------- |
| droWil1 | scaffold_181130:14574160-14574279 - | TGCGGAA----ATTGTATCTTTAAAAATACGTCACATGATGTAGACCGTGCCTGGTGCTTATTTGTTGCTATTTAAATATACAAATTGCACTAGTCCCGGCCTGCAGTAAGTGTCGCAAACAAC--------------- |
| droVir3 | scaffold_12855:6883792-6883910 + | AGTGGTGT------GCAACATTAAA---ACGTCACCTGATGTAGGTCGTGCCTGGTGCTTATTTGTTGTTATGCGAAAATCCAAATTGCACTAGTCCCGGCCTGCAGTGAGTGTCGCAGCCAACGTTC----------- |
| droMoj3 | scaffold_6540:25731646-25731761 - | AGTGCTGT------GCAACATTAAA---ACGTCACCTGATGTAGGTCGTGCCTGGTGCTTATTTGTTGTTATGCGAAAATACAAATTGCACTAGTCCCGGCCTGCAGTGAGTGTCGCAAACAACG-------------- |
| droGri2 | scaffold_14906:3026528-3026659 + | AGTGATGT---GGTGCAACATTAAA---ACGTCACCTGATGTAGGTCGTGCCTGGTGCTTATTTGTTGTTATGTGAAAATACAAATTGCACTAGTCCCGGCCTGCAGTGAGTGTCGCAAACAACAAACAACA-ACAGCA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:6902047-6902167 + | ATTT------CAAAAAGA----------GTATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TCATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGACGACCTTCATCATCT---GCT--------------AGAGA |
| droSim1 | chr2L:6697521-6697641 + | ATTT------CAAAAAAG----------GTATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TAATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGACGACCTTCATCATCT---GCT--------------AGAGA |
| droSec1 | super_3:2435750-2435870 + | ATTT------CAAAAAGG----------GTATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TAATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGACGACCTTCATCATCT---GCT--------------AGAGA |
| droYak2 | chr2L:6007719-6007838 - | ATTT------CAAAAAT-----------ATATTGGCTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGCT----TAATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGACGACCTCCATCATCT---GCT--------------AGAGA |
| droEre2 | scaffold_4929:15815527-15815649 + | ATTT------CAAGAAG-----------GTATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTCTT----TACTTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGACGACCTTAATCATCTGGAGCT--------------AGAGA |
| droAna3 | scaffold_12916:8482562-8482668 + | -------------------------------TTGGTTTCGAGACTTTCAATTCCGTAGTGCATTGCAGTGTTTT----TAAACTACAACTGCATGCTCTGCGGACTTGGCAGATTTGAAGACCAGGAGCAACT---TTT-------------AAGAAC |
| dp4 | chr4_group5:397117-397229 + | ----------------------------GCATTGGTGTCGTGGCTCTCAATTCCGTAGTGCATTGCAGTTTAATATAATTATCAACAACTGCAAGCGCTGTGGACTTGGCAGCTCCGATAGCCGCAAACA-CA---GCT--------------GCAGC |
| droPer1 | super_5:4895121-4895233 + | ----------------------------GCATTGGTGTCGTGGCTCTCAATTCCGTAGTGCATTGCAGTTTAATATAATTATCAACAACTGCAAGCGCTGTGGACTTGGCAGCTCCGATAGCCGCAAACA-CA---GCT--------------GCAGC |
| droWil1 | scaffold_180772:6812317-6812450 - | ATTT------AATCCAAA----------TTCAAGGCATTGTAGCTATCAATTCCGTAGTGCATTGCAGTTGGTA----CTAGAAAATACTGCAAGCGCTGCGGACTTGCTAACTCTGATGACCATAAAAC-CA---CCTAAAAGCAATTCCTTAGATA |
| droVir3 | scaffold_12963:14767730-14767833 - | --------------------------------TGGCAGCGAAACTCTCAATTCCGTAGTGCATTGCAGTTGATT----TTAGGAATTACTGCAAGCGCTGCAGAATTGGCAGCTCCGCTGACCGCAGACAACG---TAT----------------GGA |
| droMoj3 | scaffold_6500:17707448-17707541 - | TAT--------------------------CAATGGCTGCGTAACTTTCAATTCCGTAGTGCATTGCAGTTGATT----TAAGGAATTACTGCAAGCGCTGCAGAATTGGCAGCTCCGTTGACC----------------------------------- |
| droGri2 | scaffold_15126:4596325-4596461 + | ATTTGTGCGGCAGGAAAAGTTGGGAGTTGCAATGGCAATGTAACTTTCAATTCCGTAGTGCATTGCAGTTGATT----TAAGCAACTACTGCATGCCCTGCAGAATTGGCAGCTCTGTTGACCACATACAGCA---AAT--------------GGTGT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr4:646737-646853 + | GACTCATGCA--------------------CGTCT-TACAAACACAAGATTTTCTGGGTGTTGCGTTGTG------------TG--------TACCTGTGTACAGGCGTATTCACATGCA--------ACATCCCTTACATCTTGCTTGATTATACTCCGCCCG---------------------------------------------------------------CC |
| droSim1 | chrU:391095-391211 + | GACGCATGCA--------------------CGTCT-TACAAACACAAGAATTTCTGCGCGTAGAGTTTTG------------TG--------TACATGTGTACGTGCGTATTCACATCCA--------ACATCCCTGACGTCTTGCTTGATTATACTCCGCCCG---------------------------------------------------------------CC |
| droSec1 | super_30:369242-369358 + | GACGCATGCA--------------------CGTCT-TACAAACACAAGAATTTCTGCGCGTAGAGTTTTG------------TG--------TACATGTGTACGTGCGTATTTACATCCA--------ACATCCCTGACGTCTTGCTTGATTATACTCCGCCCG---------------------------------------------------------------CC |
| droYak2 | chr4:700584-700681 + | GACTCATGCA--------------------CGTCTTTACAAACACAAGATATTCTACGCGTTGTGTTTTG------------TG--------TACAT--------------------GCA--------ACATCCCTGACGTCTTGCGCGATTATACTCTGCCCG---------------------------------------------------------------TC |
| droEre2 | scaffold_4512:633126-633238 - | GAGACATGCA--------------------CGTCTTTACAAACACAAGATATTCTGCGCGTTGTGTTTTG-------------ACATGTATGTACAT--------------------GCAACCGTTATGCGTTCCAAGGACCCTATTAGATCGGAACACGGTCA---------------------------------------------------------------GT |
| droAna3 | scaffold_13337:22987804-22987813 + | TCCGCCCGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T |
| dp4 | chrXR_group8:8504771-8504835 + | CT----------------------------------TACAAATTCTAGAATTTCTGTCTGTCTGTCTGTCTGTTTTTGTGTGTG--------TATGT----GTGTGTGTGC---------------------------------------------------------------------------------------------------------------------- |
| droPer1 | super_150:7787-7872 - | AATGCATACA--------------------CGATA-TACATACATATGTGTGTGTGTGTGTGTGTGTGTG------------TG--------TGTGTGTGTGTGTGTG----------TA--------GACGTATGTGTAT-----GTGA------------------------------------------------------------------------------- |
| droWil1 | scaffold_181130:1758155-1758267 + | CACTTTTGTG--------------------CTGCG-TGTGAGT----GTGTGTGTGTGAGTTTAAGTGTG------------TG--------TATGTGCGAACATACGAATTTAGATAAA--------GATTCGTATACACATGACATTCGCATACTCACACCT---------------------------------------------------------------AC |
| droVir3 | scaffold_13049:11239836-11239930 - | TACATACGCA--------------------CA----TACATACATAGGTGTTCGTATG----------TA------------TG--------TACGTATGTAGGTGTG--CT---ATACACCCGTCAAAAGAGCTAATTTCCTTTCTTGGTTAT--------------------------------------------------------------------------- |
| droMoj3 | scaffold_6500:15364731-15364841 + | GGGTCAGGCAAATTCGAATGTGAATTCAAAATACA-TACATACATATGTACAT---------GTATTGTG------------TG--------TGCAAGTGTACATGTGTGCTCACATGCA--------AACTCACTTACATAATGTATG-------------------------------------------------------------------------------- |
| droGri2 | scaffold_14822:646607-646724 + | AACAAATGCA--------------------GCGCA-TGT----------------TT------------------------------------------TGATTCACAAGCCTGAACATA--------TCCTAGCATAT------------C------------GTTGGTAACGGGGCTCTGCAGAATACACACACAAACATATTGATGCTCGCGTTGATTATCATGCC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:3299040-3299166 + | TAAGGAACACTTTTTGGCC--AGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAA--ACAA-------------------------------------------------TT |
| droSim1 | chr3L:2834561-2834687 + | TAAAGAACACTTTTTGGCC--AGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAATCGCATTCAATTTCTGCACGGTAGAGATGGTACGCTTAGAAACAACCTAAA--AAAA-------------------------------------------------TT |
| droSec1 | super_2:3291343-3291466 + | TAATAAACACTTTTTGGTC--AGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAATCGCATTCAATTTCTGCAG---AGAGATGGTACGCTTAGAAACAACCTACA--AAAA-------------------------------------------------TT |
| droYak2 | chr3L:3844747-3844864 + | TAAAGTAAA---------C--AGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGT---GTGTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAA--ATGA-------------------------------------------------GT |
| droEre2 | scaffold_4784:5981989-5982116 + | AAGGAATACACTTTTGTCC--AGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTGTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAA--GCAA-------------------------------------------------GT |
| droAna3 | scaffold_13337:7606422-7606539 + | TGAAGGATGTTTTTTGAGA--AGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAAT----TTTTAACCATTCGCATTCAACCTTTGGACGGTAGAGATGGTCAGTGAGAAAGCAACCTA----------------------------------------------------------- |
| dp4 | chr4_group1:2379981-2380081 + | AATT----------TAAAA--AAATGAATAAATTCAAATGACAAAAATGTAAATGAATTAA-----------AAAATAAATTCAAATGATAAAAAGTAAA----------TGAATAAAAAAATAAAGTAAAA-------------------------------------------------TT |
| droPer1 | Unknown | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | scaffold_180698:10215726-10215851 + | ATTCAAATACTTTTGCGTTAAGGTTGGCTGGCTCCATCGTGCTTAGGTTTGAGTGTCTTCGTTTGTTTTCTCTAATGGCATTCAACCTTGGAGCGATAGAGACGGCCAATCGAGAAACAGCCTAAA--------------------------------------------------------- |
| droVir3 | scaffold_12758:855562-855687 - | TATGTATGGATCTCTCATC--AGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTT-TGA---GTTTTTCCTAGTGGCATTCAACCTTTGAACGGTAGAGATGGCCAACTGAAAAGCGACCTAAA--CTAA-------------------------------------------------TA |
| droMoj3 | scaffold_6680:1909563-1909732 - | TCAGGTATCCAATATG-----GGTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTT-TGT---GT-TTGGCTAGTCGCATTCAGCCTTTGAACGGTAGAGATGGCCAACTGAAAAGCGACCTAAC---TGAAAGCGAATCAAGGGAACTAGGCCAATAGGCGAGAATCATATAGAAATAGTT |
| droGri2 | scaffold_15110:657067-657177 + | TAAAG-----------------GTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTC-TGA---GT-TTGCCAAGTGGCATTCAGCCCCTGGACGCTAGAGATGGCCAACTGAAAAGCAACCTAAA--AA------------------------------------------------CAATC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:11766816-11766993 - | ATGAGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG-GCTCA-CTGGCCC---------------------AAATGCAGTTTGCC-C-GGAGA--------------CGCCGGT---------------TAACCCAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCAACAATATGCAAA |
| droSim1 | chr3L:11132280-11132457 - | ATGTGC-TCTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG-GCTCA-CTGGCCC---------------------AAATGCAGTTTGCC-C-GGAGA--------------CGCCGGT---------------TGCCCAAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCAAA |
| droSec1 | super_0:3951754-3951931 - | ATGAGC-TCTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG-GCTCA-CTGGCCC---------------------AAATGCAGTTTGCC-C-GGAGA--------------CGCCGGT---------------TGCCCAAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCTAA |
| droYak2 | chr3L:11795661-11795838 - | ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG-GCTCA-CTGGCCC---------------------AAATGCAGTTTGCC-C-GGAGG--------------AGCCGGT---------------TTACCCAG--------------CACTCAAGTGTGTAGTTTCGAGACCACTCTAATCCATTGCACCATTTTCCACTATATGCAAA |
| droEre2 | scaffold_4784:11744386-11744563 - | ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCTAGTGCTCG-GCTCA-CCGGCCC---------------------AAATGCAGTTTGCC-C-GGAGA--------------TGCCGGT---------------TTCCTCAG--------------CACTCAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCAAA |
| droAna3 | scaffold_13337:6020232-6020390 - | ATGTGC-ACTTTTCTAGATCGTTATCGCGTTTGGAATGGTCTCGTTAGCTAACGAATGGACTA------------------------------------------AAATGCAATTTGCA-A-TTCGG--------------CGCCAAT---------------TATCCAGG--------------CGCCAAAAAGTTTAGTTTCGAGACCACTCTAATCCATTGCATGATCTTCACTTGTATGCAAA |
| dp4 | chrXR_group8:4341287-4341484 + | ATGTGC-ACTTCTACTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAACTGCTTGCGCGCA-TTGGCC----------------------AAATGCATTTCGCA-C-CGGGATGGATGTG--GATG-------TGGCTGGATGTGGTGTCCCCAAG--------------CACAGCCAGGTGTAGTTTCGAGACCACTCTAATCCATTGCACCGCCCACCCATTTATGCAAA |
| droPer1 | gnl|ti|732454354:721-914 + | ATGTGC-ACTTCTACTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAACTGCTTGCGCGCA-TTGGC-----------------------AAATGCATTTCGCA-CCGGA--TGGATGTG--GATG-------TGGCTGGATGTG-TGTTCCCAAG--------------CACAGCC-AGTGTAGTTTCGAGACCACTCTA-TCCATTGCACCGCCCACCCATTTATGCAAA |
| droWil1 | scaffold_180949:2569086-2569314 + | ATGTGC-AATTATACTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAACAAGTGCTTG-GGGCAATTGAGCCAAAAACAAAACAGAAAAAAGAAAATGCACTTTGCCAT-CAAAACGAATGTGCGAATATGCAATT---------------TGGCCAGGCTCCTCGAACATAACACTAAGAGGTGTAGTTTCGAGACCACTCTAATCCATTGCCACATTTTTCACAATATGCAAA |
| droVir3 | scaffold_13049:23989392-23989532 - | ATGCGCGAAATTTAACGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAACA---------------TTGACCA---------------------AAGCGCACCTT----------------------------------------------------------------------ACAGCGTAGTGTAGTTTCGAGACCACTCTAATCCATTGCATCGTTTCTGGGCATATGCAAA |
| droMoj3 | scaffold_6680:18620871-18621011 - | ATGTGCGAAATTCAACGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAACA---------------TTAACCA---------------------AAGCGCACCTT----------------------------------------------------------------------ACGGCGTAGTGTAGTTTCGAGACCACTCTAATCCATTGCACCGTTTCTTTCCATATGCAAA |
| droGri2 | scaffold_15110:9704256-9704382 + | ATGTGCGAATCTAAGCGATCGTTATCGCGTTTGGAATGGTCTCGTTAGCTAACCAAAGCGCT--------------------------------------------------CGTT----------------------------------------------------------------------ACAGCGTAGTGTAGTTTCGAGACCACTCTAATCCATTCCATCGCTTTTCATTGTATGCAAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:22511281-22511406 - | TTATATCCG---TAGTGT------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT--CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGCGAGCATCTA----TCCAAA |
| droSim1 | chr3L:21812307-21812432 - | TTGTATCCG---TAGTGT------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT--CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----TCCAAA |
| droSec1 | super_11:2446955-2447080 - | TTGTATCCG---TAGTGT------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT--CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----TCCAAA |
| droYak2 | chr3L:22973852-22973977 - | TCATATCCG---TAGTGT------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT--ATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCAACTA----TCCAAA |
| droEre2 | scaffold_4784:22180738-22180863 - | CCATATCCG---TAGTGT------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT--CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----TCCAAA |
| droAna3 | scaffold_13337:22247678-22247807 - | TAAGATTCG---TAATATAGTAATATATACTGCCTACAATGGCCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AGTT--CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATC------------ |
| dp4 | chrXR_group8:186470-186597 - | ACCCACCAG---TAA-----------ATACTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-GATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTA----ACCAAA |
| droPer1 | super_80:80367-80497 + | ACAACCCACCAGAAT-----------ATACTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-GATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTA----ACCAAA |
| droWil1 | scaffold_180698:7262478-7262610 + | TCTCTCGCA---TCATA-------------TATCCGCAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTTAGGAAGTTTTCTATTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGTTGTGATAGAAGCAACCATGAAAACAAA |
| droVir3 | scaffold_13049:17242400-17242523 + | TTATTTCCTAACTAG-----------ATAATGCCCACAATGGTTCTTAGTTTTAGACGTGTTTTGGTGTGCTTG-A-AGTT--TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCGATTGT-GAGGTAAAAGCGTCCA---------A |
| droMoj3 | scaffold_6680:22273688-22273794 + | ------------------------------TGCCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AGTT--TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GAGGCGAAAGCATCCA----G----- |
| droGri2 | scaffold_15110:14942014-14942124 - | T------------------------------ACCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AGTT--TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GTGGTAAAAGCATCCA----AATATC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:22662374-22662495 - | GGATT-TTCC-------------------------ACGATCGGCGTGTCTATGGCAAGTAGAATAGCAGGCTTATCACATGTTTAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACACCCG---------A |
| droSim1 | chr3L:21947666-21947787 - | GGATT-TTCC-------------------------ACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACACCCG---------A |
| droSec1 | super_11:2578674-2578788 - | GGATT-TTCC-------------------------ACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCA---------------- |
| droYak2 | chr3L:23128644-23128763 - | GGATT-TTCC-------------------------ACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTAACTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCGAACCC----------- |
| droEre2 | scaffold_4784:22312266-22312387 - | GGATT-GTCT-------------------------ACGATCGGCGTGGCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTTACATCAAACCCG---------A |
| droAna3 | scaffold_13337:22380395-22380515 - | GAATA-TTCCA------------------------ACGACCGGTGGGTTTTTAGCAAGTAGAATAGCAGGCTTATCACAGGTTCC-TTTA-ACCCACTGTGAGATTCTTCTATTCTACTTTCGAGAAACACCCGTAAACACCGATCTC----------- |
| dp4 | chrXR_group8:344159-344293 - | GGATA-TGGC-------------------T--AGCACGATCGGTGTGTATTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGTTGACATCTAATAGAGC-AGCCCTC |
| droPer1 | super_96:132292-132395 + | G-------------------------------------ATCGGTGTGTATTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGTTGACATC----------------- |
| droWil1 | scaffold_180698:7060886-7061014 + | TGAGTTTTGA--------------CTATGACT--ATCTAACGGTGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCCTTTACAACCGGTGTGAGATTCTTCTATTCTACTTTCGAAAAGCACCCGATAACAACAAA-------------- |
| droVir3 | scaffold_13049:17089392-17089522 + | TGTTT-TTTTA------ATGTTCTCTATAT--ATTTTGATCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTACAATTCA-ACCTAGTGTGAGATTCTTCTATTCTACTTTCGACAAACACCAGCTAGCGTC----------------- |
| droMoj3 | scaffold_6680:22084806-22084935 + | GTGTT-TTCC--------------CTGTGATT--CTCAGTCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTACCATTTG-ACCGAGTGTGAGATTCTTCTATTCTACTTTCGACAAGCACCAGTCAGCGTCGTTTTCG---------- |
| droGri2 | scaffold_15110:15103971-15104124 - | GTGTG-TGCAGGTTTTATGGTTTTTGTTTT--ACTCTGATCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTAACATTCG-ACATGGTGTGAGATTCTTCTATTCTACTTTCGACAAACACCAGCTAGCGTCACATTCAGTTAAGTTTA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:5640925-5641052 + | CGAATTAA-ATTGATTTTAACTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTTCT---TCAG--GGAGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGTTTAAAGAAACTGCAATGATT------------ATCG---------------------------------- |
| droSim1 | chr2L:5434012-5434138 + | A--ATTAA-ATAGATTTTAACTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTTCT---TTGC--GGAGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGTTTAAAGAAGCTGCAAGGATC------------ATCG---------------------------------- |
| droSec1 | super_5:3718667-3718793 + | A--ATTAA-ATAGATTTTAACTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTTCT---TTGC--GGAGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGTTTAAAGAAGCTGCAAGGATC------------ATCG---------------------------------- |
| droYak2 | chr2L:13552255-13552381 - | CGAGTTAA-ATTGATTTTAACTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGACAAAGACCTTTCCT----TGC--GGCGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGCTCAAAGAAACTGCAAGGATC------------ATCG---------------------------------- |
| droEre2 | scaffold_4929:5729400-5729526 + | CGAGTTAA-ATTGATTTTAACTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGACAAAGAGCTTTCCT----TGC--GGCGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGCTCAAAGAAACTGCAAGGAGC------------AACG---------------------------------- |
| droAna3 | scaffold_12916:11084702-11084849 + | GAAGTTAA-ATTTATTTCAATTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTCCT----GGA--GCCGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGCTCAAAAAACCAGCACAATGT------------ATCGGCCAATAGGCCAATTAACCCG------------- |
| dp4 | chr4_group4:3182582-3182745 - | TGGTTTTC-GTTTA------------------------CGTTTTTT-TTTT--------GTTTTGGTTCTATGTTCTTAGTACTTGGGTTGATAAAGACCACTCGTAGTGTGA--GAAGCCTTTGTCATCGCGGGTATTATGCAACA---------TAGCTCAAAAGCGCAACAAAATACACA-------------AAA--------AATATACACGTAAATGTGTGTGG |
| droPer1 | super_10:2201518-2201669 - | TGGTTTTC-GTTCA------------------------CGTTTTTTTTTTT--------GTTTTGGTTCTATGTTCTTAGTACTTGGGTTGATAAAGACCACTCGTAGTGTGA--GAAGCCTTTGTCATCGCGGGTATTATGCAACA---------TAGCTCAAAAGCGCAACAAAATACACA-------------AAA--------AATATACACG------------- |
| droWil1 | scaffold_180708:8626283-8626424 - | AGTGAAAA-AGTGACTTAAGTTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACAAAATGT---TTACCAATCGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGCTCAAAAGTTCAACATAATAATTAAGAATTAACTTTG---------------------------------- |
| droVir3 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | scaffold_6500:14018136-14018207 + | TGATGTAATAAGTGTTTTAGCTTT-----------------------------------------AAGTTGTGCCATT-------------------------------------------------------------TTAAATTG---------AAAAAAGTG-AAGATTGAAAATTG------------ACTA---------------------------------- |
| droGri2 | scaffold_15252:3146904-3147001 + | CAAAGAGT-AGCAGGAGTAGTTAAGTTGTAGTTTCTTACGGTTTTTTTTTTAATAACATGCT--------------TTAGTGCT--------------------------------------------------------------TCAATGTAGGTGGCTCAA---------GATATTT------------GTTG---------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:5641048-5641170 + | TATC---G-----TA------------CCGCCCAC---------------------G---GGTTTTGTACCACATTCTGAGTATTCCAGATTGC-ATAGCTTTGTGCTAC------TATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAA-ATCAG---------ATTCA----------------CCTAATAG |
| droSim1 | chr2L:5434134-5434256 + | CATC---G-----TC------------ACGCCCAC---------------------G---GGTTTTGTACCACATTCAGAGTATTCCAGGTTGC-ATAGCTTTGTGCTAC------TATTGCTGTACGATCTGGGACACTTTTAACATGGTATCAA-ATCTG---------ATTCC----------------CCCAAACG |
| droSec1 | super_5:3718789-3718911 + | CATC---G-----TA------------CCGCCCAC---------------------G---GGTTTTGTACCACATTCTGAGTATTCCAGATTGC-ATAGCTTTGTGCTAC------TATTGCTGTACGATCTGGGAGACTTTTAACATGGTATCAA-ATCTG---------ATTCC----------------CCCAAAGG |
| droYak2 | chr2L:13552137-13552259 - | CATC---G-----CT------------TCGCCCGC---------------------G---TGTTTTGTACCAGATTCTGAGTATTCCTGATTGC-ATAGCTTTGGCCTTT------GATTGCTATACGGTCTGGGACACTTTTAACGTGGTATCAA-ATCTG---------ATTCA----------------ACCGAAGG |
| droEre2 | scaffold_4929:5729522-5729643 + | CAAC---G-----CA------------CCGCCCGC---------------------G---TTTTTTGTGCCAGATTCAGAGTATTCCAGATTGC-ATAGCTTTGGGCTTT------GATTGCTATACGGTCTGGGACACTTTAAACGTGGCATCAA--TCCT---------ATTCA----------------ACTGATGG |
| droAna3 | scaffold_12916:11084824-11084972 + | TATC---G-----GCCAATAGGCCAATTAACCCGGACC---A------ATCAATATG---AGTTTTGTGCCAGATTCTGAGTATTCCTGATTGC-ATAGCTCTGTGTTGT------GACTGCTATACGGTCTGGGACACTTCTAACATGGCATCAA-ATCTG---------TGTCAAC--------------GGCAGCAG |
| dp4 | chr4_group4:3182464-3182586 - | TGTG---G-----GT------------GTGCGTGT---------------------GTGCGGGTGTGTGCTATATTCTGAGTATTGCCTCCTGTTGTAGTTGTGGAATATTGAAATATCAACTATACGGTTCGGAATCCTCTAAATATGGCAGCC--------------------A----------------CTAAAGAC |
| droPer1 | super_10:2201395-2201525 - | TATACACGTAAATGT------------GTGTGGGT---------------------GTGCGGGTGTGTTCTATATTCTGAGTATTGCCTCCTGTTGTAGTTGTGGAATATTGAAATATCAACTATACGGTTCGGAATCCTCTAAATATGGCAGCC--------------------A----------------CTAAAGAC |
| droWil1 | scaffold_180708:8626131-8626297 - | TAAG---A-----AT------------TAACTTTGAATTGGAAACGATATTGAAA-T---GAATTTATGCTAAATTCTGAGTATTCCTGATTGC-ATAGTGTGTATTTGA------TACTACTATACGGTCGGGGAAACTTTTAACATGGCCCAAA--TGATAAATGACAGTGACAATGAAAAAGAAAATACCAAAACAG |
| droVir3 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | scaffold_6500:14018206-14018306 + | TAA-----------------------------------------------------------------GTCATGCTTTGAGTATTCCTTATTGC-ATAGTTTAC--ATAT------AATTACTATACAGTCTGGAGCACTTAAAGTTGGGCATAGACAACCG---------AACAA----------------CTTAGGAG |
| droGri2 | scaffold_15252:3146997-3147109 + | TGTT---G-----AT------------TGGCCTTG---------------------G-------TTATGCTAAATTCCAAGTATTCCTTATTGC-ATAGTTTATAAT--T------GAATACTATACAATCTGGCGTTCTTAGAATTTGTCATAAG-AC-------------TTCA----------------CATAACAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:5641176-5641294 + | GTAGTGAGCTC--GT-------T------ATCAAG-----GGCCGAGTTACCTTTGATCACCAGTAACTGAGATT-GT--TTCTGATA---CGGTTTCGTTTTCTGGCAATCAA-AAGAACTTGGACTCGA-CTTGAA----------------------------------------------------------TTCAACTAC |
| droSim1 | chr2L:5434262-5434381 + | GTAATGTGCTC--GT-------T------ATCATG-----GGCCGAGTTACCTTTGATCATCAGTAAGTGAGATT-GT--TTCTGATA---CGATTTCGTTTTCTGGCAATCAA-AGGAACTCGA-CTCGA-CTTGAA-TC-------------------------------------------------------TACAACTAC |
| droSec1 | super_5:3718917-3719036 + | GTAATGTACTC--TT-------T------ATCAAG-----GCCCGAGTTACCTTTGATCACCAGTAAGTGAGATT-GT--TTCTGATA---CGATTTCGTTTTCTGGCAATCAA-AGGAACTCGA-CTCGA-CTTGAA-TC-------------------------------------------------------TACAACTAC |
| droYak2 | chr2L:13552021-13552135 - | GAAAA----TCTAAT---------------TCATG-----GGTCGAGTTACCATTGATCACCGGTTACTGAGGTT-GT--TCCTTCTT---TGGCTTCGTTTTCTGGCGATCAA-AAGAACTCGA-CTCGA-CTCGAA----------------------------------------------------------TCCAACCAA |
| droEre2 | scaffold_4929:5729649-5729755 + | TG-----------AT---------------TCATG-----GGTCGAGTTACCATTGATCACCGGTTACTGAGGTT-GT--GCCACATT---CGGCTTCGTTTCCTGGCGATCAA-AAGAACTCGA-CTCGG-CTCGAA----------------------------------------------------------TCCCAGTAC |
| droAna3 | scaffold_12916:11084979-11085099 + | ACAAAGGACTA--CAGGAAAGCG------ACT-TA----AGTCCGAGCACTATTTGATCACTGGTTACTGAGGTT-GT--TTTGTCAT---AAGCTTCGTTTTCTGGCGATCAA-ATACGCTCGA-CTT-----TGGG----------------------------------------------------------CCCAACCAC |
| dp4 | chr4_group4:3182338-3182458 - | GAGGAGAGCTG--TT---------------TCGCCGGACAGTCAGAGTTTGATTTGATCTCTAGTTACTGGGCTTTGA--TTCGAAATAAGTAGCTTATTATTCTAGTGATTGAAATGAACTCGA-CTCG------AG----------------------------------------------------------TGCCACAAA |
| droPer1 | super_10:2201269-2201389 - | GAGGAGAGCTG--TT---------------TCGCCGGACAGTCAGAGTTTGAGTTGATCTCTAGTTACTGGGCTTTGA--TTCGAAATAAGTAGCTTATTATTCTAGTGATTGAAATGAACTCGA-CTCG------AG----------------------------------------------------------TGCCACAAA |
| droWil1 | scaffold_180708:8625990-8626125 - | GTGTGAAACT-----------------------TG----AGTTTGAGTTTACATTGATCACTGGTTAGTGAGGTT-CAAAGTCAGACC---CAACTTCGTTATCTGGCGATCAA-ATAAACCTGG-CTTACA----AAAGCTATAATTGCTGAAATGGATACACGT-----------------------T------T---TCTAT |
| droVir3 | scaffold_12963:3615378-3615429 + | G---------------------------------------------------------------------------------------------TTTCATTTTTCAGTGAATTA-AACAACTCAA-TTTACACACACA----------------------------------------------------------CACACACAT |
| droMoj3 | scaffold_6500:14018312-14018360 + | ATTTAAATGTA--TT---------------CCGGTCTATGGCG--------------------TTTACGG--------------------------TCGTTTTGTCGTA---------------------------------------------------------------------------------------------CTC |
| droGri2 | scaffold_15252:3147112-3147237 + | GTTGTTAGCAG--CCACATCTCTGAATTGAAT-TG----GATTCGTT-----------------TTACT--------------------------TTCTTTTATTACTGAAATG-AGTTGTTCAG-TTC-T-TTTAAA-TT-------------------------TCAGTCTACAAACTAAGAGCAGGTTACTTTCATAACACA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:5641283-5641404 + | GAATTCA---ACTACTT---CG-----AT-GGGGC-ACTCAGGCTATAAGGTAGAGAAATTGATGCTGTCTACACTAT--------------T----CAGACTTCAGTTTCATTACCTTTCAATTTGTTTGCCCC-CA--TGCAACAGTGA------------------------------------------TA-----G---------------------------------TA |
| droSim1 | chr2L:5434368-5434488 + | GAATCT-ACAACTACCT---CG-----AT-GGGGC-GCTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTAT--------------T----CAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CC--TGCAACAGTGA------------------------------------------TA----------------------------------------- |
| droSec1 | super_5:3719023-3719143 + | GAATCT-ACAACTACCT---CG-----AT-GGGGC-ATTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTAT--------------T----CAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CA--TGCAACAGTGG------------------------------------------TA----------------------------------------- |
| droYak2 | chr2L:13551914-13552032 - | GAATCCA---ACCAACT---TC-----AT-GGGGC-ACACAAGCTATAAGGTAGAGAAATTGTTGTCTTCCACACTAT--------------T----CAGACATCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CA--CGCAACAGTGA------------------------------------------TA----------------------------------------- |
| droEre2 | scaffold_4929:5729744-5729862 + | GAATCCC---AGTACCT---CC-----TT-GGGGC-ACTCAAGCTATAAGGTAGAAAAATTGTTGTCTTCCACACTAT--------------T----CGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CA--CGCAACAGTGA------------------------------------------CA----------------------------------------- |
| droAna3 | scaffold_12916:11085088-11085210 + | GGGCCCA---ACCACCT---GG-----CCGAGGGC-ACTCAAGCTATAAGGTAGAGAAAATAATGTCTTCGTCTCCAA--------------A----TAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCC-CA--AGCAACAATGA------------------------------------------TA-----A---------------------------------CA |
| dp4 | chr4_group4:3182204-3182349 - | GAGTGCCACAAATGCCACATGATGCAAAT-GGAGC-AGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTAT--------------TC---TAGGCATCAATTTTCGTATCTTTTAATTCGTCTGGCGC-CAACAGCAACAGCTA--------------------CAAAACGAGTAACGAGGAGAGATA----------------------------------------- |
| droPer1 | super_10:2201135-2201280 - | GAGTGCCACAAATGCCACATGATGCAAAT-GGAGC-AGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTAT--------------TC---TAGGCATCAATTTTCGTATCTTTTAATTCGTCTGCCGC-CAACAGCAACAGCTA--------------------CAAAACGAGTAACGAGGAGAGATA----------------------------------------- |
| droWil1 | scaffold_180708:8625857-8626006 - | GGATAC-ACGTTTTCTATTTAA------TAAGGAC-CCTCAAGTTATAAGGTAGAGAAAATGTTGTCTTTATATT----TGTAACAAT-TGTT----AAGACATCACTTTCACTAGCTTTCAATTTGTCTGCTCCACA--TGCAACAACA-------------------TATAAT-------ACAATCAAACAAA----------------------------------------- |
| droVir3 | scaffold_12963:3615418-3615613 + | ACACAC-ACA--CATAA---GA-----A--AGGGCGCCTCAAATTATAAGGTAGAGAAATTGTTGTCTACT---TTACATATG--------GT----GAGACATCAAT-TCACTAGCTTTCAATTTGTACGCCCA-AA--TGCAACGGAACCATTTTGGAGGAACATCATAT-TT-------AGAATAAGCCACATGATAGGCAGCACATTTAGCATTTGAATGCCGGACTGCTCA |
| droMoj3 | scaffold_6500:14018360-14018470 + | G---------------------------T-AGAGC-GCTCAAGTTATAAGGTAGAGATATTGTTGTCTTTTTGCA----TATAGCACTCTGTTATGAAAGACATCAAT-TCACTAGCTTTCAATTTGTACGCTTA-AA--TGCAGCA----------------------------------------------------------------------------------------- |
| droGri2 | scaffold_15252:3147228-3147335 + | TCATAACACA-----CT---CA--------AGAGC-TCTCAGATTATAAGGTAGAGATTTTGTTGTCTTCTATTATA---------------A----AAGACATCAAT-TCACTAGCTTTCAATTTGTATGCTCA-AA--TGCAACGG---------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:5641975-5642093 + | TACAACTAA----------------------TTTTTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTCGA---TCGAAACATCTGTATATACCTTTGTTCCGATT-GGACA-AAAGTG--CGTCTTC--------------TA--GTT |
| droSim1 | chr2L:5435040-5435157 + | TACTACTGA----------------------TT-TTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TCGAAACATCTGTATATACCTTTGATCCGGTT-GGACA-AAAGTG--CATCTTC--------------TA--GTG |
| droSec1 | super_5:3719693-3719811 + | TACTACTGA----------------------TTTTTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TAGAAACATCTGTATATACCTTTGATCCGGTT-GGACA-AAAGTG--CATCTTC--------------TA--GTG |
| droYak2 | chr2L:13551185-13551307 - | CACTACTGC---A------------------TTGTTCTTGGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAAT-GGACG-AAAGAG--CATCTTC--------------AA--GTT |
| droEre2 | scaffold_4929:5730368-5730489 + | CAGTGCTGC----------------------TTGTTCTTAGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTGTATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAAT-GGACG-AAAGAG--CATCTTC--------------TA--GTT |
| droAna3 | scaffold_12916:11085426-11085560 + | TAATTA--GTTAAAAA---------------GTGTTCTTGATTTAATCTAAAACAAGGTACATATCTGGTTGTTTCCTATATTCAAAGTTTGAAACATCTGTATCTACCTTTGTTTCGATT-AAACT-AAAGAG--CTACT---AAGA---ATACGAGT--GTT |
| dp4 | chr4_group4:3181623-3181668 - | AAGAAGAGGA--AAA--------GATAATGT-GA-------------TTAATACAA-------------------------GTGGCTGATTGGA---------------------------------------------------------------------- |
| droPer1 | super_10:2200549-2200594 - | AAGAAGAGGA--AAA--------GATAATGT-GA-------------TTAATACAA-------------------------GTGGCTGATTGGA---------------------------------------------------------------------- |
| droWil1 | scaffold_180708:8625051-8625198 - | CATAGTTAAT--TGA--------GTTAATTG-AATTCTAATTCTAGTCTAAAACAAGGTACATATCAGGTTGTTTCGTATATTTGAAGCCTGAAACATCTGTATCTACCTTTGTTTCGAATAGGACT-AAAGAG--TTTTCTTTAAGCCCAACACATTT--GTT |
| droVir3 | scaffold_12963:3616326-3616465 + | TGGAGTTAATGTACGGATGGGCA--------TAAACAACAATCTAATCTGAAACAAGGTACATATCAGAGTGTTTCTTAAATTTGATTATTGAAACCTCTGTATATACCTTTCATTGGATT-AAACT-GATAAGCACATGTTT--------------CAAAAGT |
| droMoj3 | scaffold_6500:14019361-14019489 + | TGGAGTGCGC--A------------------CTG-AATCGGTCTAATCTAAAACAAGGTACATATCAGAGTGTTTCCCGTATTCGAGTTTTGAAACCTCTGTATATACCTTTCATTAGATT-CAACCGAAAGTC--CATA----AATATT---GA--TA--TAT |
| droGri2 | scaffold_15252:3148184-3148306 + | GCAAAATAA-----------------------------CAGTCTAATCCAAAACAAGGTACATATTAGAGCGTTTCCTATCTTTGAGTATTGAAACCTCTGTATATACCTTCA-TTCGATT-CGACT-GATAATCTCATT----AAAATC---ATTTCA--GTT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:5642087-5642216 + | TCTAGTTGGTGATAC-----------------------CA-------ATA----A--CATATTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTATGTTT--TTGATGT-TTAAGTTAAAAGCCTCTGTTCTAAGACAATTTGATGATCAAAA------CAGC-----CGGAGAAA |
| droSim1 | chr2L:5435151-5435306 + | TCTAGTGGGT-----AAATCCATGTGGTTATGACAAGTCAATC------A----A--AATCTTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTGTGTTT--TTAATGT-TTAAGTTAAAAGCCACTGTTCTAAGACAATTTGATGATCAAAACTTCAACT----TCATTTTGTAA |
| droSec1 | super_5:3719805-3719957 + | TCTAGTGGGT-----AAATCCATGTGGTTATGATAAGTCAATC------A----A--AATCTTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTGTGTTT--TTAATGT-TTAAGTTAAAAGCCACTGTTCTAAGACAATTTGATGATCAAAA---C---CACCTG-ACAAAAAAA |
| droYak2 | chr2L:13551054-13551191 - | TCAAGTT--------ATATCC-------TATGATCAATCAAT-------G----A--AATCTTGGTCCCACTTGTCTTAGAATAGGGGAGCTTAACTTATGTAT--ATCATGT-ATAAGTTAAGAACCTTTATTCTAAGACAATTCGACTACAAAAT------CAAC-----TGAAAAAC |
| droEre2 | scaffold_4929:5730483-5730617 + | TCTAGTTGGTTA----CATCCTTGCGTTAGTGATCAATCAAT-------A----A--CGTTTTGGTCCCACTTGTCTTAGAATAGGGGAGCTTAACTTGTGTGT--GTTATGC-TTAAGTTAAGAGCCTTTATTCTAAGTCAATTCGACTGCCAA------------------------- |
| droAna3 | scaffold_12916:11085546-11085681 + | AAGAATACGA-----GTGTTCGCGGGATGAGC-----------------A----TCGAATCAAAGTCAAACTTGTTTTAGAATAGGGGAGCTTAACTTATTGGAG-AGTTGATATTAAGTTAAGATCCCTAATTCTAAGATAATGTGACCATTAATG---C---AAC-----G------T |
| dp4 | chr4_group4:3181498-3181623 - | AGGGATC-------C------CC------------------------GTG----C-CAAATAGAGCCAAAACTATCTTAGATCGAAGGTTCCTGGCTTACAGGG--ATTTGAT-GTAAGTTAAGAACCTCCGCTCTAAGCTAGTATGGCTATCAT-----CAACG----G-CCCTGAAAG |
| droPer1 | super_10:2200424-2200549 - | AGGGATC-------C------CC------------------------GTG----C-CAAATAGAGCCAAAATTATCTTAGATCGAAGGTTCCTGGCTTACAGGG--ATTTGAT-GTAAGTTAAGAACCTCCGCTCTAAGCTAGTATGGCTATCAT-----CAACG----G-CCCTGAAAG |
| droWil1 | scaffold_180708:8624927-8625071 - | TTTAAGCCCA-----ACACATTTGTTGTCTGTGT----CA---------G----T-TGAACAAGGTCAAACTTGTCTTAGAATAGGGGAGCTTAACTTATATTG--TTTTGCT-TAAAGTTAAGAGCCTCAATTCTAAGATAATGCGACTATCACCG---C---AGCA-G-TTC-AGATA |
| droVir3 | scaffold_12963:3616457-3616573 + | TTCAAAAGTT----T------TC---------------ATATTG---AAAATAC-----ATTAAGTTTAACTTATCTTAGAATAGGGGAGCTTAACTTT-GT-A--TGAACAT-TTAAGCTAAGAGCCTCAATTCTTAGATAATGCGACTAACAA------------------------- |
| droMoj3 | scaffold_6500:14019483-14019608 + | GATATATGATGA------------------TGATTTTCCAATTGTGATGAAATC-----ATTGAGTTCAACTTATCTTAGAATAGGGGAGCTTAACTTAA--TC--TGAACAC-TCAAGCTAAGAGCCTCGATTCTTCGATAATGCGACTAACA-------------------------- |
| droGri2 | scaffold_15252:3148300-3148427 + | TTCAGTTGATTA----GA-----------------------------AGAGTGC-----ATTATGTCAAACTTATCTTAGAATAGGGGAGCTTAACTTTTATCATATTAGCGC-TCGAGCTAAGATCCTCAATTCTTGGATAAGGCGACTAGCAA--------CT----G-CAGTAAAAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:243020-243156 - | TAATTGTACAATCTGGA-----CA-----ATATTGCTCAACA-TTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTG-TGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGA----------AAAGT-----GTTTTTC |
| droSim1 | chr2L:248245-248381 - | TACTTGTACAATCTGGA-----CA-----AAATTGCTCAACA-TTTTGGGGGGTGAAACTGTACGTTATATGTGCCCTTCTG-TGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTACTGCAACGA----------AAAGT-----GGTTTTC |
| droSec1 | super_14:240987-241123 - | TACTTGTACAATCTGGA-----CA-----AAATTGCTCAACA-TTTTGGGGGGTGAAACTGTACGTTATATGTGCCCTTCTG-TGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTACTGCAACGA----------AAAGT-----GGTTTTC |
| droYak2 | chr2L:236040-236180 - | TAATTGTACAATCACCATCTGACA-----AAATTGCTCAACA-TTTTAGGGGGTTAAACTGTACGTTATATGTGCCCTTT-T-GTAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTGAAGCAACAGCAACAA----------ATAGT-----GTATTTC |
| droEre2 | scaffold_4929:289337-289472 - | TACTTGTAGAACCTG-A-----CA-----AAATTGCTCAACA-TTTTAGGGGGTGAAACTGTACGTTATATGTGTCCTTCTG-TAAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTACAGCAACAGCAACAA----------AAAGT-----GAATCTT |
| droAna3 | scaffold_12943:4147952-4148086 + | TGGGTTTTCTGG--------------------AAGCTCAACCCTTTTGGGGGGTCAAACTGTACGTTCTATGTGGCAATCTT-AGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTGAAGCAAAGTCAACAAATCTCAACT-AAAGT-----GTT--TT |
| dp4 | chr4_group1:4362148-4362281 + | TCATTTCCCCAT--------------------CTGCTCAAAA-ATTTGAGGGGTCAAACTGTACGTTCTATGTGACAATATT-CGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAACTTGATGCAACAGCAACAA-TCGCAACAACAATTCTA-------GC |
| droPer1 | super_5:848159-848292 - | TCATTTCCCCAT--------------------CTGCTCAAAA-ATTTGAGGGGTCAAACTGTACGTTCTATGTGACAATATT-CGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAACTTGATGCAACAGCAACAA-TCGCAACAACAATTCTA-------GC |
| droWil1 | scaffold_180764:130106-130233 - | TAT--GTAATAAATTAA-----AGAATCAATTCTACACAACA--TTTATGGGGTTAAACTGTACGTTGTATGTGCAAATCTTAAGAAATCCATAAGCGTATAGCTTTTCCCCTTAAAAGTTGATGTTAAATCAACAA--------------------------- |
| droVir3 | scaffold_12963:8856389-8856513 + | TTAGTGTAGAAAAAGAA-----AAAAACAC--ACACACAAAT-GTTTAGGGGGTCAAACTGTACGTTGTATGTGCAAATG-A-TGAAATTCATAAGCGTATAGCTTTTCCCCTTAAACGTTGATGTGACGACAAC----------------------------- |
| droMoj3 | scaffold_6500:2474475-2474605 - | AATGTGAACAAA--------------------ACACTCAAAT-GTTTAGGGGGTCAAACTGTACGTTGTATGTGTAAACA-A-TGAAATCCATAAGCGTATAGCTTTTCCCCTTAAAAGTTGAAGTGGAATCAACAG----------CAATTTAAGCATAGCTA |
| droGri2 | scaffold_15252:12933990-12934109 - | G--------------GA-----AA-----ATAACACTCAAAT-GTTTAGGGGGTCAAACTGTACGTTATATGTGTAAATG-A-AGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTGAAGTGATAGCAACCT----------AAAAA-----GTC--TT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:6045612-6045728 - | ATT------T---CGC-TCGGCTGTAACCTGATCCG-----------------CTGCT--GTGGGTTGTGGGCTGTG-------TGGCTGTGG-----TATAGGTGCCGCCAGTTGATAACCCCC-AG-----------------------CGTGGGCA-CGGACCCACTGGTCGTCAACCGC |
| droSim1 | chr2L:5834370-5834493 - | ATT------T---CGT-TCGGCTGTAACCTGATCCG-----------------CTGCT--GTGGGCTGTGGGCTGTGGGCTGTAAGGCTGTGG-----TATAGGTGCCGCCAGTTGATAACCCCC-AG-----------------------CGTGGGCA-CGGCCCCACTGGTCGTCAACCGC |
| droSec1 | super_5:4116543-4116659 - | ATT------T---CGT-TCGGCTGTAACCTGATCCG-----------------CTGCT--GCGGGTTGTGGGCTGTG-------AGGCTGTGG-----TATAGGTGCCGCCAGTTGATAACCCCC-AG-----------------------CGTGGGCA-CGGCCCCACTGGTCGTCAACCGC |
| droYak2 | chr2L:13146709-13146824 + | ATT------C---CGC-TCGGCTGTAACCTGATCCG-----------------CTGCT--GTGGGATGTGGGATGTG--------GGCTGTGG-----TATAGGTGCCGCCAGTTGATAACCCCC-AG-----------------------CGTGGGCA-CGGCCCCACTGGTCGTCAACCGC |
| droEre2 | scaffold_4929:11075516-11075624 + | ATT--CC-AT---CAT-TCGGCTGTAACCTGATCCC-----------------CTGCT--GTGG----------------------GCTGTGG-----TATAGGTGCCGCCAGTTGATAACCCCC-AG---------C----ACAG-----CGTGGGCA-CGGC-CCACTGGTCGTCAACCGC |
| droAna3 | scaffold_12916:8156171-8156273 + | CAT--CCGATC--TGA-TTGGCAGTAACCTGATCCG-----------------CGGTT--GTG-----------------------GTTGTGG-----TGGAGGTGC---TACTTGATAACCCAC-TG-----------------------CGTGGGCA-CTGGCCTTTCGGTTGTCAACGGC |
| dp4 | chr4_group1:223208-223319 + | GGA------T---CGG-GTGGCTGTAACCTGATCTGGGAGCGGTGCAGCAGGGCTGCG--GTGG--------------------------AGT-----TGGAGGTGTCGGCTGTTGATAACCCCC-AG-----------------------CGTAGGCA-CTGGT---ATGGTTGTGAACGGC |
| droPer1 | super_1:219437-219548 + | GGA------T---CGG-GTGGCTGTAACCTGATCTGGGAGCGGTGCAGCAGGGCTGCT--GTGG--------------------------AGT-----TGGAGGTGTCGGCTGTTGATAACCCCC-AG-----------------------CGTAGGCA-CTGGT---ATGGTTGTCAACGGC |
| droWil1 | scaffold_180708:7887454-7887585 + | GGATTGC-AATTGGTTGTGGGCTGTAACCTGATCTGGA----------------AGCT--ATAG-----------------------ATGTGATGATGCGGAGGTGTCGTCAGATGATAACCCCCCAGGGTAGACAGCTTAGACAT-----CGTAGGCA-TTGGC---CTGGTTGTCAACGGC |
| droVir3 | scaffold_12963:3941701-3941794 - | ATT------G---GGCGTCTGCTGTAACTTGAAGCG-----------------CTGATCTG-------------------------------------------------TGGTTGATAACCCCC-TG---------C----CAAGGTGCTCGTAGGCAGCTACCGCTCCGGTTGTCAACGGC |
| droMoj3 | Unknown | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droGri2 | scaffold_15252:1454932-1454939 + | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAACTAG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:12459989-12460115 - | GAGAACTGCAGGA------GACTTGGAGAGCAGAGATA-----------------------------CCT--------CTGGAGAAGCG--CGTGACCTGACCCCAGCAGGA-----------GAACCCAACCCGCTT----TTCCACCTA----------------G--------------GTGTCTC--T-----------CTCTCTCTTT--ATCTGTTCCTC------AGCTCG |
| droSim1 | chr2L:12267908-12268042 - | GAGAACTGCAGGA------GACTTGGAGAGCAGAGATA-----------------------------CCT--------CCGGAGAAGCG--CGTGACCTGACCCCAGCAGGA-----------GAACCCAACCCGCTT----TTCCGCCTA----------------G--------------GTGTCTC--TCTCTCTC---TCTCACTC--TATCTCAGTTCCTC------AGCTCG |
| droSec1 | super_16:651020-651150 - | GAGAACTGCAGGA------GACTTGGAGAGCAGAGATA-----------------------------CCT--------CCGGAGAAGCG--CGTGACCTGACCCCAGCAGGA-----------GAACCCAACCCGCTT----TTCCGCCTA----------------G--------------GTGTCTC--T----CTC---TCTCTCTC--TATCTCAGTTCCTC------AGCTCG |
| droYak2 | chr2L:8897071-8897221 - | GAGAACTGCAGGAGACGGAGACTTGGAGAGCAGAGAC---------AGAGATGA-----------TACCT--------CTGGAGAAGCG--CGTGACCTGACCCCAGCA--------------GAACCCAACCCGCTT----TTCCGCCTA----------------G--------------ATGTCTC--TATCTCGC---TCTCCCTC--T--CTCTGTTCCTCTTGCACAGCTCG |
| droEre2 | scaffold_4929:12958952-12959089 + | GAGAACTGCAGGA------GACTTGGAGAGCAGAGAT---------------GA-----------TACCT--------CTGGAGAAGCG--CGTGACCTGACCCCAGCAGGA-----------GAACCCAGCCCGCTT----TTCCGCCTA----------------G--------------GTGTCTC--TCACTCTC---TCTCTCTC--TCTCTCTTCTCCTC------AGCCCG |
| droAna3 | scaffold_12916:12931176-12931307 + | GAGAAATGCATGA------GATTTTGAGAGGAGAGATA-----------------------------CCT--------C---AGAAGCG--CGTGACCTGACCCCGTCCGTCTGTCCATCTATGAACCCAACCCGCTT----TTC---TCCAAACACCAGAGAGGAG-----------------------------GTCGAGAGTG----------------ACGG------TGTGTG |
| dp4 | chr4_group3:3150562-3150729 - | GAGAACTGCATGA------GACTTGGAGAGAAGAGATACCCACAA--GAGGCAGGCAGTGAAGTGGAGTGGAGGGAGC---GAGAAGCG--CGTGACCTGACCCCAAGACC------------GAACCCAACCCGGTT----CTGTTCTCCAGTGTACAGACAGGCA-----------------------------CTC---TGTATGAGTA--TGTACCCTCCTT------CGCTC- |
| droPer1 | super_1:4633245-4633407 - | GAGAACTGCATGA------GATTTGGAGAGAAGAGATACCCACAA--GAGACGGT---CCG--TGGAGTGGAGGGAGC---GAGAAGCG--CGTGACCTGACCCCAAGACC------------GAACCCAACCCGGTT----CTGTTCTCCAGTGTACAGACAGGCA-----------------------------CTC---TGTATGAGTA--TGTACCCTCCTT------CGCTC- |
| droWil1 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | scaffold_13246:1657163-1657301 - | AGAGCGAGCAAGC------AGC------------------------------GTT---TTGTGTCTACCTCAGAAAGC---G--AGACG--CG-----TGAACCCAAATGCG-----------AACCTCGACCCGACTCGAATTCCGACTC----------------AACGCAAACGCTCAACTGTCTG--T------C---TGTCTGTC--T--GTCTGTCTGTC------TGCCTG |
| droMoj3 | scaffold_6500:4266220-4266364 + | AAGTAGTAGAAGA------AAAAGAAGAAGCAGCGGC------AACAGAAACGTT---TGGTGTCTACCTCAGAAAGC---G--ACACG--CA----TGAACCCCAAAAACG-----------AACCTCGACCCGACC----GACTACC----------------------------------AATTTCTAT------T---TGTCTGACTCT--GTCTCT-GCTG------TGTGTG |
| droGri2 | scaffold_15252:15585528-15585616 + | GCAGA--AGAGTA-AAA--GG---AAGAAGCAGAC----------------------------------------------AAAAGACACGCG--TGTTGAACCCGAAAACGAACCCAACTTCAAATTCAACGCAC---------------------------------------------------------------------------------------TTG------CCTCT- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:13747733-13747854 - | TCAAAGA-AA------------AATTGTTGATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCTTTTGATGTACTACTTTAAGAATCTCCAGTTAAAGTCAACACA--TAAG |
| droSim1 | chr2L:13506671-13506792 - | TCAAAGAAAA------------AATTGTTCATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAACAT---TAAA |
| droSec1 | super_3:14598-14719 - | TCAAAGAAAA------------AATTGTTCATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAACAT---TAAA |
| droYak2 | chr2L:10160053-10160172 - | TCAAGGA-AA------------AGTGTTTGATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCA-CAAT-----AAGATCAACCTTTTGATTTACTACTTTAGGAATCTCCAGTCAAAGTCAACAT---TAAT |
| droEre2 | scaffold_4929:11718898-11719017 + | TCAAAGA-AA------------AGTTGTTGATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCA-CAAT-----TGAATCGACCGTTTAATGTACTACTTTAAGAATCTCCAGTCAAAGTCAACAA---TAAT |
| droAna3 | scaffold_12943:1815538-1815649 - | AAA---------------------T----TATGGCAGTTTCCTTAAGTAGTATCCATTAAAGGGTCGTTAATA-TATT-----CAAAGTGACCGTTTGATGTACTACTTTAGGTAGCTCCATTTAAAGTCGGCTAAAATAAG |
| dp4 | chr4_group1:1722766-1722895 + | TTGAATAGTGATTTAGTTCTACAATT----GCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCT-AGCT-----AAAATCGACCTTTTGATGTACTACTTTAAAAAAGCACAGTCAAAGTCAACAGAA--CTG |
| droPer1 | super_5:3483598-3483726 - | TTGAATAGTGATTTAGTTCCACAATT----GCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCT-AGCT-----AAAATCGACCTTTTGATGTACTACTTTAAAAAGC-ACAGTCGAAGTCAACAGAA--CTG |
| droWil1 | scaffold_180772:545302-545417 + | CTCGTG------------------------A-TGCAGATTCTTTAAGTAGTAACCTTTAAAGGGTCGTTTGTCCAATTCTTTTAAAGTCGATCCTTTAAGTTACTACTTGCAGAATGTGTTTCTGAAATCAACAAA--TATA |
| droVir3 | scaffold_12723:5044036-5044131 - | C---------------------AATT----A-TACATGTGCCTTAAGTAGTAACCATTAAGAGGTTGTTGTTA-GATT-----TAAATCCACCTTTTAATGTACTACTTATGACAAATGCATAG--------------CAAA |
| droMoj3 | scaffold_6500:16664499-16664593 + | AAA--------------------ATT----A-TGCAAGTATCATAAGTAGTAACCATTAAAAGGTCGTGATT-----T-----GAACTCAACCTTTTAATTTACTACTTGTGATAAATGCATAGAAATGT------------ |
| droGri2 | scaffold_15126:8057347-8057450 - | TCTA----------------------------------TGCCTTAAGTAGTAACCATTAAAAGGTTGTTTTTGTAAAT-----TATACCGACCTTTTAGTGTACTACTTAAAGTACATTCATTGCAAGTCGACGAATATATA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:18018375-18018498 + | TTCGG---------------TGAATCC--CCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA--TGGAC----TACTGC-----AATTCGAAA--T |
| droSim1 | chrU:15519348-15519471 + | TTCGG---------------GGAATCC--CCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA--TGGAC----TACTGC-----AATTCAAAA--T |
| droSec1 | super_8:326574-326685 + | TTCGA---------------GGAATCC--CCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA--TGGAC----TACT------------------- |
| droYak2 | chrX:16642309-16642432 + | TTCGG---------------GGTATCC--CCAAACCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGGGA--TGGTC----TACCGC-----AATTCGAAA--G |
| droEre2 | scaffold_4690:8346009-8346128 + | TTTGG---------------GAAGTTC--CCAAATCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA--TGGAT----TACTGC---------CGAAA--G |
| droAna3 | scaffold_13335:1607974-1608101 - | TGTGT--TTATTTTTTTT--GGAA-------AATATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAATTT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGG--CAGAT----AATGTC-----AG--CAGTA--T |
| dp4 | chrXL_group3a:1977519-1977620 - | TTCCT---------------GGAAGCCATCTAGGAGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAGC--GTATATGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGG------------------------------------ |
| droPer1 | super_11:2701270-2701398 + | TTCCT---------------GGAAGCCATCTAGGAGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAGC--GTATATGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGGTG--CAGCCAAATCATCGC-----AGCGCATCC--A |
| droWil1 | scaffold_181096:12029390-12029503 + | TTTAT-----------------------------ATCCTGTCCTACGCATGAGTTCCACTAAGCAAGTTTTGGGCATAT-TTCAAAAACAAAAACTTGACACGTTGAGCTCGTCTGTGTGA--CAGAA----C-GAACAAC--AAATGAAGA--A |
| droVir3 | scaffold_12928:1264092-1264205 - | TTCAA---------------GAGCAGC--TCGCGCTTCTGCCCTACGCACGAGTTCCACTAATCAAGTTTTGAGCGGAT-TCGAAAGTCGAAAACTTGACACGTTGAGCTCGTCCGTGGGG--CGGCA----TTC---------------AA--G |
| droMoj3 | scaffold_6473:13724290-13724417 + | TCCTTATCCATAC-------CATATCC--ACATTTGGCTGTCCTACGAGCGAGTTCCACTAATCAAGTTTTGAGT--GT-TCGAAAATCAAAAACTTGACACGTTGAGCTCGTCTGTGTGG--CA--C----AAGTTC-----AA--CAAAAGCA |
| droGri2 | scaffold_15203:8445730-8445869 + | TTCGGT-TTGTTCTTTTACAGCAGTGCATCCGGGTGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAGC--GTATTTGAAATCAAAAACTTGACACGTTGAGCTCGTGTGTGCGTTGCGG------AAA-TCAACTTA---CTCAA--A |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:12530354-12530478 + | AAAGTGCCCAT-------------------AA------TCGAAAGGCATCTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGTAATG--A-TTTG---AATCTATCATAAGACACACGCGGCTATAACCGTT--GTCT--AAGAGCTTCAAA---A-------------------TC------GAT |
| droSim1 | chrX_random:3444234-3444357 + | AAAGTGAACGT-------------------AA------TCGAAAGGCATCTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGAATTG--A-TTTG---AATCTATCATAAGACACACGCGGCTATAACCGAT--GTCT--AAATGCTTCAAA-----------------------TC------GAC |
| droSec1 | super_21:285079-285202 + | AAAGTGAACGT-------------------AA------TCGAAAGGCATCTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGAATTG--A-TTTG---AATCTATCATAAGACACACGCGGCTATAACCGAT--GTCT--AAATGCTTCAAA---A--------------------T------GAT |
| droYak2 | chrX:6807144-6807273 + | ATAGTGCATTT-------------------AA------TCGAAAGGCATCTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGTAATG--A-TTTG---AATCTATCATAAGACACACGCGGCTATAACCGAT--GTCA--C---------ACATGCGACACA--------------CACATTAGAT |
| droEre2 | scaffold_4690:14328958-14329082 - | AAAGTGC-CTT-------------------AA------TCGAAAGGCATCCGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGTAATG--A-TTTG---AATCTATCATAAGACACACGCGGCTATAACCGAT--GTCT--AAACGCTTCAAA---G----TG--------------C------AAT |
| droAna3 | scaffold_13117:3438231-3438350 + | TTAGTGGA-------------------------------AGAAAGGCATTTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGATATC--G-AAAG---AATCTATCATAAGACACACGCGGCTATAATCGAT--GTCCTTAGAGTCTACAAG---C--------------------T------AAA |
| dp4 | chrXL_group1a:3316403-3316556 + | ATCACCC---CAAAAAGTGAGCAGACA-----TCGCG-A--CATGGCATCTGTTGCAGCTAGCGGGTGTTTTATCTGGTAGCTGTACCC--T-TTTG---AATCTATCATAAGACACACGCGGCTATGACCGAT--GCCC--AAACCATCCAAG---A----TTCAATAATTAGTAATC------AAT |
| droPer1 | super_77:191839-191992 - | ATCACCC---CAAAAAGTGAGCAGACA-----TCGCG-A--CATGGCATCTGTTGCAGCTAGCGGGTGTTTTATCTGGTAGCTGTACCC--T-TTTG---AATCTATCATAAGACACACGCGGCTATGACCGAT--GCCC--AAACCATCCAAG---A----TTCAATAATTAGTAATC------AAT |
| droWil1 | scaffold_181096:1892772-1892900 + | AGAGTGTAC---------------------AATCGTATT--CAGGGCATTTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGCACTA-AAATTTCAATAATCTATCATAAGACACACGCGGCTATGACCGAT--GTCTTT-----CT----------------------TAGCCAAC------AAT |
| droVir3 | scaffold_13042:2658865-2658967 + | --------------------------------------------GACGTCTGTTGTAGCCAGCGGATGTTTTATTTGGTAGTTGCGCTT--T-ATTA---AATCTATCATAAGACACACGCGGCTATAACAGTGCCG--TTCA---------ACAAGCAA------------------C------GTC |
| droMoj3 | scaffold_6328:939989-940116 - | TAAACCC---CA----GTGATCGACTATGAAA------ACAATTGACGTCTGTTGTAGCCAGCGGATGTTTTATTTGGTAGTTGTATTT--T-ATAA---AGTCTATCATAAGACACACGCGGCTATAACAGAACTG--TTCA---------ATA------------------------------AGC |
| droGri2 | scaffold_15203:5475247-5475378 + | AAAGTCTGCCC-------------------AA------AAAATTGACGTCTGTTGTAGCCTGCGTATGTTTTATTTGGTAGTTGTAACTAAA-ATCG---AATCTATCATAAGACACACGCGGCTATCACAGTTCCG--TTCA---------ACAATCAACGTA--------------C-CATT-ACA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:12956090-12956215 + | TGCATGTGAGAGAA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--------------------------GTACACAGAAAGAAAACC--- |
| droSim1 | zec46h04.g1:44-170 + | TGCATGTGAGAGAA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--------------------------GTACACAGAAAGAAAACC--- |
| droSec1 | super_21:701218-701343 + | TGCATGTGAGAGAA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--------------------------GTACACAGAAAGAAAACC--- |
| droYak2 | chrX:7229770-7229895 + | TGCATGTGAGAGAA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--------------------------GTACACAGAAAGAAAAAC--- |
| droEre2 | scaffold_4690:13914734-13914859 - | TGCATGTGAGAGAA--------TTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--------------------------GTACACAGAAAGAAAACC--- |
| droAna3 | scaffold_13117:3891784-3891909 + | TGCATGTGAGAAAA--------TTCCGTGGCTGGCAT--CGTTCACTGTAAATTGTAACCATCAAAGCGTT-TTTT----ATCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCTG--------------------------GAGCACATATTAAAAA----- |
| dp4 | chrXL_group3a:1391638-1391748 - | AGCATGTGAGAGAGCGGCTCCTTTCCCTGGACCCCAT--CGCTCGCTGTAAATTGTAATGGCCAAAGCTTT-TTTG----TTGGTAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTG------------------------------------------------------ |
| droPer1 | super_52:413307-413417 + | AGCATGTGAGAGAGCGGCTCCTTTCCCTGGACCCCAT--CGCTCGCTGTAAATTGTAATGGCCAAAGCTTT-TTTG----TTGGTAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTG------------------------------------------------------ |
| droWil1 | scaffold_181096:6691507-6691601 - | AC-----------A--------TTAAACGGCCCAATA--CGCTCGCTGTAAATTGTAGCAATCAAAGCGTTGCCTTTTGCCTC---ACAGCTTGGTGTTACTTCTTACAGTGAGTGTG------------------------------------------------------ |
| droVir3 | scaffold_12928:4279754-4279849 - | ------------------------------------------CCGCTGTAAAATGTAATCATCAGAGCGTC-CT------CTC--AACCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCCC--------------------------AAGGTCCGACCGTAAATCATA |
| droMoj3 | scaffold_6328:350121-350240 + | ---------------------------------------CGACCGCTGTAAATTGTAATCATCAAAGCGTC-TG------CTA--AATCGCTTGGTGTTACTTCTTACAGTGAGCGCGGCGCTCGAAACTACAGTGAAACTAGCATAAAGTGAACAAGGAAAGGAAA----- |
| droGri2 | scaffold_14853:994421-994540 - | CACG--------AA--------CT---TGAATGACGTCACGCCCGCTGTAATATGTAATCATCAAAGCGTG-TATT----TT---ACTCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCCACAC-----------------------GTCCAGCGGAGGAGAGTG--- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:19445170-19445290 + | TGCAAATAGCTAAAGAGAATGATAGGGAA----ATTGCT--AAATATTTTTTTTGTATAAATAACTTTT---AACTTTTGTACAATA------CG-AATATTTAGGCATTTCTCAAATCA------------------------------AA------------------------GATTTGCAAGCC-----------------AAA |
| droSim1 | chrX:15010925-15011057 + | ATAAAAAAGCTGAAGAGAATGATAGTG-----AATTGCT--AAATATTTTCTTTGTATAAATGACTTTT---AACATTTGTACAATA------TT-AATATTTAAACATTTCTCGAATCA------------------------------AAGTA-----------TGCCACATCAGCTTTGCAAGCC-----------------AAA |
| droSec1 | super_8:1727594-1727726 + | ATAAAAAAGCTGAAAAGAATGATAGTG-----AATTGCT--AAATATTTTCTTTGTATAAATAACTTTT---AATATTTGTACAATA------TT-AATATTTAAACATTTCTCGAATCA------------------------------AAGTA-----------TGCGACATCAGCTTTGCAAGCC-----------------AAA |
| droYak2 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droEre2 | scaffold_4690:9681872-9682038 + | -TGAAATAGCTGAATATAATGCTAGTGAA----ATTGTT--AAATATTTACTTTGTATAAATGACCTTCATAAACATTTATACAATT------TCAAATATTTTGCCATTTCTCAATCCAATTCAATTTTGCCACACAGAAGTGTCCAAAAAGTA-----------TGCTACATCATATTTGCAATCC-----------------AGA |
| droAna3 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| dp4 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droPer1 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | scaffold_181096:7946002-7946145 + | CTTAAATATTCGAAACGTGTACTAAGA-----TTCTACT--TCTTGCT------------------------AGCTTATTTTG--TAAACTAATG-AATAATTAAATGACAATGAAAACG------------------------------AAGTAAATTAGTTAATTAAGACAGCTGCTTAACATATAAAATAATTGAAAATATTCAA |
| droVir3 | scaffold_13042:918660-918775 - | CTGAAAGAACTATAGATATTATTAATAATAGGAACTGCTTCAGATATTTTGTTTGCAGT-----GTCTT---AGCTTTTGTTT--TA------TG-ATGTTTTATATATTCCGAATATTA------------------------------AA------------------------GCTTCAAA---------------------AAA |
| droMoj3 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droGri2 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:19445546-19445676 + | AATATACTTC----ACTTTA-CCGTCGTCGACTTTTCGTGGTTGGTGGTTGAACTTCGATTTTAAG-TA--TTT--------AAATAAAATGAAATCTGTTCATTCTCCGACACAAGAAGTTCACGCAAAGGA------------------------GCTGCAGCTGCGAA |
| droSim1 | chrX:15011303-15011407 + | CG-------------------------TATACTTTTCCGGGTTGGTGGTTGAACTTCGATTTTAAG-CA--TTT--------AAATAAGA-TAAATCTGTTCATTCTTCGACCCAAAAAGTTCACGTGAAGAA------------------------GCAGCG------AA |
| droSec1 | super_8:1727974-1728085 + | AC------------------TTCAACGTATACTTTTCGGGGTTGGTGGTTGAACTTCGATTTTAGG-TA--TTT--------AAATAAGA-TAAATCTGTTCATTCTTCGACCCAAAAAGTTCACGTGAAGAA------------------------GCAGCG------AG |
| droYak2 | Unknown | GTTATAA--G----AT----TTTAACGTCGACTTTTCGTGGTTGGTGGCTGAACTTAGATTTTGAG-TA--TAC--------AAATAGAA-CAAATCTGTTCATTCCTCGACACAACAAGTTGACGTAAAGGA------------------------GCAGCA------AA |
| droEre2 | scaffold_4690:9682299-9682417 + | ACTATAC--C----AT----TTTAACGTCGACTTTTCGTGGTTGGTGGCTGAACTTAGATTTTGAG-TA--TTC--------AAATAAAA-TAAATCTGTTCATTCCTCGACACAAGAAGTTGACGTGCAGGA------------------------GCGGCA------AA |
| droAna3 | scaffold_13417:2478622-2478750 - | -----------------------GACACCGACTCCTCGTGTTTGGCGATTGAACCTGGATTTTTAA-TT--TTC--------GAGTACGA-GAAATCTGTTCATTCCTCGACACTAGTAGTTGGCGCGACA-C------TCAGCGCACCAAACATGAACCGCGGCTCAAAT |
| dp4 | Unknown | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droPer1 | Unknown | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | scaffold_181096:7946449-7946592 + | AAAATATATCGGGAATATTG-TCGACATGGCCTTTTCGTGTTTGGTGATTGAACTTGGATTTTGTTCTATATACATATATAAAAAT-ATG-TAAATCTGTTCATTCCTCGACACTAGAAGTTCATGTCAATAACTTCATTT----------------CCTGCA-------- |
| droVir3 | scaffold_13042:918337-918453 - | AGAACAGTTA----AAATCATCGGACATTCACTTTTCGTGTTCGATGTTTGAACTTGGATTTTTTT-TA--TAT--------A-----CA-CAAATCTGTTCATTCCTCGACACTAGAAGTTTGCGTCAATAA------------------------GCTGC--------- |
| droMoj3 | scaffold_6328:2909116-2909204 - | ----------------------CGGCTTTCACTTTTCGTGTTCGATGTTTGAACTTGGATTTTTAA-AA--TAT--------GAA---AA-GAAATCTGTTCATTCCTCGACACTAAGAGTTTAGG--------------------------------------------- |
| droGri2 | scaffold_15081:2051526-2051596 - | -----------------------GACATTTACTTTTTGTGTTGGGTGATTC---------------------------------------------TGATTCACTTTTCGACACATCAAGTTCACCTCAATAA------------------------ACTGCA-------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:19445696-19445826 + | AG----GTCC-AGGTAAGCTCAA-TTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTG--TTTCCAA-GAGCAAATATAACTTCATTGGAA-GCTAAGTGGATTTGCCCA-AAT-------CAGCTTGGTATTTAT |
| droSim1 | chrX:15011423-15011546 + | GT----A---------AACTCAA-TTGTCACTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTGGTATTTGCG--TTTCCAA-GAACAAATATAACTTCTTTGAAA-GCTAGGTGGATTTGCCCA-AGT-------CACCTTGGTATTTAT |
| droSec1 | super_8:1728102-1728227 + | AG----G-------TAAACTCGA-TTGTCACTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGCG--TTTCCAA-GAACAAATATAACTTCTTTGAAA-GCTAGGTGGATTTGCCCA-AGT-------CTCCTTGGTATTTAT |
| droYak2 | Unknown | GA----AAAC-AGAACCACTGAC-TTAGCACTGGTCATGGCCTCCAAGCGAGCAAAGAAGTAGTATTTGTG--TTCCAAA-AGTCAAATATAACTTTTTTGGAA-GCTACGGGGACTTGTCCA-AGA-------CAGC----------- |
| droEre2 | scaffold_4690:9682437-9682562 + | GA----AAAC-AGAACCACTAAC-TCAGCACTGGGCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTG--TTCCAAA-AGTCAAATATAACTTTTTTGGAA-GCTACGGGGATTTGCCCA-AGC-------CAACTTGCTG----- |
| droAna3 | scaffold_13417:2478487-2478598 - | GG----TTGC-A---ATCCTGGC-TTGGGGTAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTGCTTTTAATGGTCAAATATAACTTTTTTGGAA-GCTACGAGGAGTTGTCC--------------------------- |
| dp4 | Unknown | ----------------------------------------------------------------------------------------------------------------------------------------------------- |
| droPer1 | Unknown | ----------------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | scaffold_181096:7946609-7946719 + | AT-----------------TCATTTTTCCAATGGCCATATCCTCTAAGCGAGCAAGAAAGTGGTATTTGTC--TTTGGAA-ATTCAAATATAACTTTTTTGGAA-GCTACAAGGCAATGTCCACAAT-------CAAC----------- |
| droVir3 | scaffold_13042:917533-917679 - | ATCCGAATATGAGATTTACCA-ATTATTAACTGGGCATTCCCTCTGAGCGAGCAGAGAAGTATTATTTGCGTGAATCTGA-TATCAAATAAGACTTTTTTGGTTCGCTATGAGGTATTGTTCA-TAAATAAACACGTCTGCCTATATAC |
| droMoj3 | scaffold_6328:2908489-2908614 - | TC----A---------------ATCAGACGCTGGGCATTCCCTCTGAGCGAGCAGAGAAGTATTTT-TGCGTGCATCTGA-TATCAAATAAAACTTTTTTGGTT-GCTGCGAGGTATTGTTGA-AATGTAAACGTTGCTCGCTCTCTAC |
| droGri2 | scaffold_15081:2051206-2051247 - | CA----------------------------AAGGACATCTTCTGTAAGCGAGCAAAAATATAATATTTGT------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:19452771-19452891 + | ATCCAA--------------TTGGCAATATTGAATTTTTGATTTTAAACACTTCCTACATCCTGTATGTGT-TTTG----------------------------CATCCGGTACAGATGTGGGAGTCGTTTGCACTCAGAGATTTCACAGAATTCGAGGATC-GA |
| droSim1 | chrX:15018379-15018489 + | -------------------------AATATTGAGTTTTTGATTTTAAACACTGCCTACATCCTGTATGTGT-TTTG----------------------------CATCCGATACAGTTGTAGGAGTCGTTTGCAGTCAGAGATTTCACAGACTGCGAGGATC-GA |
| droSec1 | super_8:1735110-1735229 + | A-AAA--------------TTAATTAATATTGAGTTTTTGATTTTAAACACTCCCTACATCCTGTATGTGT-TTTG----------------------------CATCCGATACAGTTGTAGGAGTCGTTTGCAGTCAGAGATTTCACAGACTGCGAGGATC-GC |
| droYak2 | chrX:11885955-11886071 - | ATCCA------------------GCAATATTGAATTCTTGACTTTAAACACTGCCTACATACTGTATGTGT-TTTG----------------------------CACCCGATACAGATGTGGGGGTCGTTTGCAATCAGAGATTCCGCAGGCTACGAGGATC-GG |
| droEre2 | scaffold_4690:9688756-9688876 + | -TCCA--------------ACCATCAACATTGAATTCTTGACTTTAAACACTTCCTACATCCTGTATGTGT-TTTG----------------------------CGCCCTATACAGATGTGGGGGTCGTTTGCACTCAGGGATTCCACAGGCTGCAAGGATC-GG |
| droAna3 | scaffold_13417:2467701-2467813 - | GTCCAAG------------CCAGTCGACAATGAATATTTGATTTTAAACACTACCTACATCCAGTATGTTACTTGA----------------------------CTCCCAATACGGATGTGGAGGGCGTTTACACTCAGAGATTCTGGAG-----------C-CA |
| dp4 | Unknown | --------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droPer1 | Unknown | --------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | scaffold_181096:7956608-7956722 + | GTTTTGTAGATGTGTTGGAATC-ACGACATTCAACTGTTATGTTTACATATGTCTAACATTCTGT-----------------TATAGTATAACAGTGTGTCTTGCG----------------------TTCCTACTCAACAC-TCAACAT-TCGC--------AA |
| droVir3 | scaffold_13042:906902-907003 - | ----------------------------------TCTTTGATTTTAGATACTCCCTATATCCAGTATGTGT-GCCACTT-ATTGAAATACA-----------------------AGATGTATGGGGTGTCTGCAATCACAAACCACGTAG-CCGCAA---TCAGC |
| droMoj3 | scaffold_6328:2901122-2901224 - | ----------------------------------TCTTTGATTGTAGATACTCCCTATATCCCGTATGTGC-GATACTTTGATAAAATACA-----------------------AGATGTATGGGGTGTCTGCAATCACAAACCACATAG-CCGCAA---TCAAA |
| droGri2 | Unknown | --------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:19452913-19453039 + | AAC------------------G-----GCGGTG-GTGGGCAT--------------------------CG-----CCATGCAGTGCCGCGGCATTGGTGAGGC-CATCTCCAATGG-ATTAGTTCT---CA------ACATTGGATTAGTTATCATCAATGCCGGTGCACTGCACC--TAACAACATC---------------GCGCCGG |
| droSim1 | chrX:15018511-15018617 + | -----------------------------------------------------------------------------ATGCAGTGTCGTGGCATTGGTGAGGA-CATCTCCAATGG-ATTGGTTCT---CA------TCATTGGATTAGTTATCATCAATGCCGGTGCACTGCACTGCTGTCAACTTC---------------GCGCAAT |
| droSec1 | super_8:1735239-1735349 + | TCC------------------G------------------------------------------------------CATGCAGTGCCGTGGCATTGGTGAGGA-CATCTCCAATGG-CTTAGTTCT---CA------TCATTGGATTAGTTATCATCAATGCCGGTGCACTGCAGC--TGTCAACTTC---------------GCGCAAT |
| droYak2 | chrX:11885798-11885920 - | AGA------------------G--------GTGAGTGAGAAT--------------------------CG------CATGCAGTGCCACGACATTGGTGAGGG-CATCTCCAATGG-----GGACCCGGCA------TCATTGGATTAGTTCTCATTAATGCCGGAGCACTGCACC--TACCAACTTC---------------GCACGGT |
| droEre2 | scaffold_4690:9688892-9689017 + | TCC------------------A-----GAGGTGTGCCAGAAT--------------------------CG------CATGCAGTGCCTCGACATTGGTGAGGG-CATCTCCAATGG--GGAGCCAG---CA------TCATTGGATTAGTTCTCATTAATGCCGGAGCATGGCACC--TACGAACTGA---------------GCATTTG |
| droAna3 | scaffold_13417:2467561-2467679 - | GCT------------------A-----CCGATG-------------------------------------CTCCCCGAAGGAGCGCCTCGACATTGGTGAGTT-CATCTCCAATGG--TCAGTAGC---CC------GCATTGGATTAGTTCTCATTGATGGCGAAGCGAGT--CC--TACCCCCACA---------------CCAGCGA |
| dp4 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| droPer1 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| droWil1 | scaffold_181096:7956743-7956912 + | CTCTCCCCTTCCTTCTTACACA-----GGATTATG-TAGGAT--------------------------TA------T-GGCAACACCTCGATATTGGTGAGTTCCAGCTCCAATGTTATTGGAGCCCAACATTGAACACATTGGATTAGTTCTCATCGATGGCGAAGTGTTT-GTGAGCAATATCGTATATTGTGCGTGCAGTGTATTGT |
| droVir3 | scaffold_13042:906708-906880 - | ATC------------------GTTATCGTTATC-GTTATCGTTATCAGAATTAATTATCGTTGAAGTGCGTTCTTTGGTGCAGCCCCTCGCGATTGATGATAG-CATCTCCAATGA-----GCATA---TC------ACATTGGATTAGTTCTCATCGATGCCGATGCGCTGTACCAGCAACAACAAC---AGGAATAGCAACGGAAACA |
| droMoj3 | scaffold_6328:2900970-2901098 - | TAT------------------C-----GTTATC-GCTAGCGA--------------------------CGCTTC-GGGTGCAGCCCCTCGCGATTGATGAAAG-CATCTCCAATGA-----GTATT---TC------GCATTGGATTAGTTCTCATCGATGTCGATGCGCTGTATCAGCAACAACAAC---------------AACATGA |
| droGri2 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:19453040-19453168 + | GGA-------AT--------------------------------------CCCAACACAACGA-ATCAACAA-----------------------A-----------------CAAGGTATGCTTTAGATAACTCGAATATCACATCTTC---------A--GTGTTCGAAATCTGATGAGATA-TTCACGTTGTCTAAATCATGTTTTGTACGAAAC--------------------TACAACTAA |
| droSim1 | chrX:15018618-15018753 + | GGA-------AT--------------------------------------ACCAACTCCGGAGTGCC-------------------------GAAAATGCA----TCC-----CAAGGTATGGTTTAGATAACTCGAATATCACATTTTC---------A--GTGTTCGATATCTGATGAGATA-TTCACGTTGTCTAAACCATGGTTTGTTTTTGAA--------------------AACTACTCA |
| droSec1 | super_8:1735350-1735483 + | GGA-------AT--------------------------------------ACCAACTCCGGAGTGCC-------------------------GAAAATTCA----TCC-----CAAGGTATGGTTTAGATAACTCGAATATCACATCTTC---------A--GTGTTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGGTTTGTTTGAAA----------------------ACTACTCA |
| droYak2 | chrX:11885613-11885797 - | TCCTATTCCTATTCC----------------GATTCC-GATTCGGAATCAACCAAGTGCGGACAGCT-------------------------CAGAGTTCA----CCC-----CAAGGTATGGCCTAGATAACACGGGTATCACATCTTT---------AT-GCATTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGTTTTGTAAGGAAATGCACTCTGCTCATCAGTTAAACTACTAA |
| droEre2 | scaffold_4690:9689018-9689184 + | GGG-------ATCGG----------------GATCCCGGATTCGG-----------------A-GTCAACAAACTCTTGTCAAACAAACGAGCAGAATTCA----ACC-----CAAGGTATGGCCTAGATAACTCGGGTATCACATCTTT---------AT-GCATTCGATATCTGGTGAGATAATTCACGTTGTCTAAACCATGTTTTGTAAGAAAT--------------------AACGCCTTA |
| droAna3 | scaffold_13417:2467442-2467560 - | GGC-------ACACG----------------CGTACC---------------------------------------------------------------------GC-----CGAGGTTCGGCCTCGATCACGAGAACGTCGCATCTTA---------GT-TACATTTCCATATGATGAGATA-TTCACGTCGTCGAAACCGTGTCTCGGCTTGGCC--------------------ACCAATCGC |
| dp4 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droPer1 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | scaffold_181096:7956913-7957043 + | GAT-------GT--------------------------------------GACACCGTGGACG-ATCAACAA-----------------------AATTCA---------------TATACAATTTCAATAACGTAGATATCGCATCGTTTTTTTTTACC--ATATTTGATAAGAGATGAGATA-TTCACGTTGTTGAAGTTGTGAAGGAATTAA-----------------------------AAA |
| droVir3 | scaffold_13042:906546-906707 - | GGA-------AC--------------------------------------CGGAACAGAAACA-GGAAAAAG-----------------------AAATTGTGTTCCCCCTGGCCCAGCCCAGTTGCGATTGCGCGGACATCTCATCGTA---------TAAACATTCGATAACCAACGAGATA-TTCACGTTATCGAGACTGAGACGTCGGCAAAG------ACTGCAAGATTGTGCGACAAGTGA |
| droMoj3 | scaffold_6328:2900856-2900969 - | GTT-------AAACGAAATGAACCAGTTCGTTGTTC--------------------------------------------------------------------------TGGCCCAGCCCGGTTCCGATTGCGCGGACATCTCATCGTC---------TGACCATTCGATAACCGATGAGATA-TTCACGTTATCGAGACTGCG------------------------------------------ |
| droGri2 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:19455254-19455375 + | AAGTACAATA---TCTTGGT--------TGGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTTGC-------AA-TCGAAAATCGTGTCCAGTGCCGTAAATTGCAGTTGTGTGAA--CGCAAACGGCAGCAG--------------------CGAAGG |
| droSim1 | chrX_random:5079001-5079113 + | AAGTA------------GAT--------TGGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTTGT-------GG-TCGAGAATCGTGTCCAGTGCCGTATATTGCAGTTGTGTGGA--CGCAAACGGCAGCAG--------------------CGAAGG |
| droSec1 | super_8:1737859-1737971 + | AAGTA------------GAT--------TGGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTTGT-------AG-TCGAGAATCGTGTCCAGTCCCGTAAATTGCAGTTGTGTGGA--CGCAAACGGCAGCAG--------------------CGAAGG |
| droYak2 | chrX:11883747-11883862 - | AAGTGCATCC------AGGT--------GGGCGGCACAGCCAGCACTCTACGCCGCTGGCTTACGTTGT-------AC-TCGGAAATCGTGTCCAGTGCCGTTGATTGCAGTTGTGTGGA--CGCAAAGGGCAGCG-----------------------GAGA |
| droEre2 | scaffold_4690:9691187-9691301 + | AAGTGCATCC-------AGT--------GGGCGGCACAACCAGCATTCTACGCCGCTGGCTTACGTTGT-------AC-TCGAAAATCGTGTCCAGTGCCGTTGATTGCAATTGTGTGGA--CGCAAAGGGCAGCG-----------------------GAGG |
| droAna3 | scaffold_13417:2460507-2460635 - | GAGTGCGGACAGGGCAAGCT--------CGGCGGCACAGACAGCATTCGACGCTGCTGGCTTACGTGGT-------GG-TTGATATCCGTGTCCAGTGACGTTGATTGCAGTTGTGTAGA--CGCGAATTACAGCGACCG------A----------TAGTTG |
| dp4 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droPer1 | super_14:1991206-1991216 - | AACAAC--------------------------------------------------------------------------------------------------------------------------------------------------------AACTA |
| droWil1 | scaffold_181096:7961115-7961220 + | -------------------T--------TGGCAACACAGGCAGCATTCGACGACGCTGGCTTACGTTAAAAAC---AA-ACGATATCCGTGTCCAGTGACGTTGATTGCAGTTGTGTA------CAATGATTAGCGG--------------------CGATTT |
| droVir3 | scaffold_13042:902659-902773 - | ACA-----------------------------GGCACA-GCCGTACTCTACGCTTTTGGGA-ACGAG--CTCTTTGAC----GCACTCGGTTCCATTGCCGTTGAGTAGAGCTGTCCTGA--TGCATATCTCAACG---T------ATTGATTCAAACAAGAA |
| droMoj3 | scaffold_6328:2897048-2897148 - | CG------------------------------GGTACA-GCCGTACTCTACGCTTTTGGGA-ACGAG--CAATCATACAAAGCCACTCGGTTCCATAGCCGTTGAGTAGAGCTGCCCCCGTTTGCACATCACAAC---------------------------- |
| droGri2 | scaffold_15081:2040911-2041055 - | AAGTACGGCA---GTTCGATAACCAACAC--AGGTCCA-GCCGTATTCAGCGCTTTTGGAA-GTAAG--GAACATGAT----TCTCCTAGTTTCAATGCCGCTGAGTAAAGCTGTCCCAA--TGCAAATCGCAACG---TAACTGAATCGAATCAATCAATAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:19455855-19455979 + | TTAATCAC---TGGAA-----------------------CATACATGTGAG-----------GATGTCACAAATACA--------------CTGA---ATTTGGGGGGAATTCT--------TATGTATATAC-AAATTCTTCCCGAACTCAGGCTAATTTTGTG---------------GCA---------------------------TCCGTATACACAAAA----------------------------------GT------ATA |
| droSim1 | chrX_random:5079602-5079664 + | TTAATATA---C--------------------------------------------------------------------------------------------------------------------------AAATTCTTCACGAATTCAGGCTAATTTTGTA---------------GGA---------------------------GCCGTATATACAAAA----------------------------------GT------ATA |
| droSec1 | super_8:1738459-1738521 + | TTAATATA---C--------------------------------------------------------------------------------------------------------------------------AAAATCTTCACGAATTCAGGCTACTTTTGTA---------------GGA---------------------------ACCGTATATACAAAA----------------------------------GT------ATA |
| droYak2 | chrX:11883259-11883281 - | TTAATGGC---TGGGA-----------------------AATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT------AAA |
| droEre2 | scaffold_4690:9691773-9691867 + | TTAATCGT---TGGCA-----------------------AATACGTATGG------------GGTGCCACA------CAAATCGATTAGCTCTGA---ATTCGGGCGGAATTCTGAAGCACGCAT-----------------------------CCACTTTTGTA---------------GCA---------------------------TCC--------------------------------------------------------- |
| droAna3 | scaffold_13417:2459297-2459411 - | TAAGTTAC---TTATA-----------------------ATTAAATTTAAA-----------TATTTCGAAATAAAA--------------CTATAAAATAATTGTCTTATTTCAG------------------AAAATATGTACATATTTATACCAATCTT--------------------------------------------------------------------------------TACATATTTCAATAAAAAT------ATA |
| dp4 | chrXL_group1e:12509670-12509797 - | TTAAGCAT---TTTAATTTTTGTATTTTTCAAGATCGAAAATATTTATGC-GCGTAAATTTAAGAGTAAGTCCTTA-GTAAGTAAGGAAG-------------------AAC------------------------------------TACGCTCTGGATTTGAT---------------ATA---------------------------CTCGTGAAGTTAAAA----------------------------------CA------ATA |
| droPer1 | super_14:1989251-1989367 - | CTAAGTCA---TCGTG-----------------------CGCATCTGTTGG-----------GGAGTAAAAACTAAA--------------A-------TTAGAGTGGAAACTC--------TATTTTGAGTTGAATTTTTCCATGAAAATCTGCTACATTTTGG---------------G-T-----------------------------------------------------------------TTTAAATTTGTAT------TTT |
| droWil1 | scaffold_181096:7961895-7962008 + | TAGATTATGATTAGAATAAGCACACACAACACACGCACA-----------------------------------------------------------------------CACACACACACACATCTATATAT-AAATCAACCAAGAAAACA---CAATATCGAA---------------GAAA--------------------------TTAGAAAGTATATAT----------------------------------AT------ATA |
| droVir3 | scaffold_13042:902091-902097 - | TCAATCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | scaffold_6328:2896306-2896380 - | ATGAGAAA---GGG----------------------------------------------------CTATA------GAAATTGATGACG---------------------------------------------ATATAATCCAAAACTAAGATTACAATAATA---------------ATA---------------------------ATaataaac-----------------------------------------a------aaa |
| droGri2 | scaffold_15081:2040284-2040418 - | TTGTAATT---TAAGA--------------------------------------------------------------------------------------------------------------------------TGAAGATGAAGACA----------ATAATAATAATAGTGATAGGAGTTGAAGAGCTTAAATGTAAACTGATAATTGTATATACAAAGTTGAAAATGTCATTCTCTGGTTATTGGATTAAAATGAGGACACTT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:174190-174317 - | GCGTG-------------------TGAAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCCTGGCTAGCTTACTCCT--TTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCGAC-----------TCCCGAATA---ATA |
| droSim1 | chrX:118257-118384 - | GCGTG-------------------TGAAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTCACTACT--TTTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAAC-----------TGCCAAATA---ATA |
| droSec1 | super_10:47183-47310 - | GCGTG-------------------TGAAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTCACTACT--TTTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAAC-----------TGCCAAATA---ATA |
| droYak2 | chrX:117050-117182 - | GCGTG-------------------TGAGATGTGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTTAGCTTT--TTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCGACTCGA------CTGCCAAATG---ATA |
| droEre2 | scaffold_4644:121637-121764 - | GCGTG-------------------TGAAATGTGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTTACCTCT--TTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGTAGTTCGAC-----------TGCAAAATT---ATA |
| droAna3 | scaffold_13117:4815182-4815314 - | AAGTGATAAGAAATGTCC-----------TAGGAAGTAATTTGTATGTCAGCCTCTCATTTGGCCTGCCTAGCTGACTTT---AAATTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGATTCAAC-----------TTGC--AGA---ATA |
| dp4 | chrXL_group1e:4097625-4097758 - | CCGCC-------------------ACAAAAGAGAAACAAATTGAATGTGAGTCTCTCACATGGCTGGTCTAGCTGACTTG---TTTCTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTTTTTGTAGCCCAACGTAA-------AGCCGAAAATCGTAA |
| droPer1 | super_17:1039174-1039307 - | CCGCC-------------------ACAAAAGAGAAACAAATTGTATGTGAGTCTCTCACATGGCTGGTCTAGCTGACTTG---TTTCTAATACTGCTAGCTGCCTTGTGAAGGGCTTACGTGTTTTTGTAGCCCAACGTAA-------AGCCGAAAATCGTAA |
| droWil1 | scaffold_181096:8731771-8731891 + | ---------------------------------------ATTGTGTGTGAGTCTTTCACTGGGCGTGCTTAGCTAGAAATTTATTTACCATATTGCTAGCTGCCTTGTGAAGTGCTTACGTGTAATTGTTGAACAACAAAAAAAAATCAGAAAAAGC---ATA |
| droVir3 | scaffold_10277:1011-1148 - | GGGCTATAAAATTTGGACCAAATGTGA------GAGCGCATTGCATGTGAGTCCCTCATTTGGCAGGTTTAGCTGCTTTT---AATACGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGTTAAACAAC-----------T--TAAACA---ACA |
| droMoj3 | scaffold_6473:11075547-11075659 + | TTATT-------------------T---ATATGAACCGCATTGCATGTGAGTCCCTCATTTGGTGCGCTTAGCTGTTTTTC--AATTTGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGTTTGTAATACAAC-------------------------- |
| droGri2 | scaffold_14853:6339037-6339158 + | GATTA-------------------TGAG------AGCGCATTACATGTGAGTCCCTCATTTGGCGGACTTAGCTGCTTTTC--AATTTGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGTAAATCAAC-----------TGAGGAAAA---ATA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:1682879-1683005 - | A-CTGCAACTTAGGAG-------------------AAACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAAA--------TTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCAAGGCCG |
| droSim1 | chrX_random:1085378-1085505 - | AACTGCAACTTAGGAT-------------------AAACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAAA--------TTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCAAGGCCA |
| droSec1 | super_10:1477754-1477881 - | AACTCCAACTTAGGAT-------------------AAACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAAA--------TTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCAAGGCCA |
| droYak2 | chrX:1528063-1528198 - | A------ACTTAAGAGAGAGACCAA-----GTGCAAAGCATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAAAAAA--------TTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCAAGGCCG |
| droEre2 | scaffold_4644:1660954-1661093 - | A-CTGCAACTTAAGAGGG-CACCAA-----CTGCAAAGCATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAAA--------TTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCTAGGCCG |
| droAna3 | scaffold_12929:1586917-1587049 + | A-TTATAGTTTTA-----AGA---ACTGTGTTTCATAAAGTCCTCACTGAAGCCGGGTTTCGTTAACAGCGGGCTGTCATTTCGAA--------ATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAATAACAACGTTTAA----- |
| dp4 | chrXL_group1a:4258914-4259036 - | A-CGAATATCTA-------------------TGCGAAAAATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAATAA--------ATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAGAAACAAC----AAATGCA |
| droPer1 | super_11:835055-835162 - | T---------G-------------------ATGCGAAAAATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAATAA--------ATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAGAAACAAC----------- |
| droWil1 | scaffold_181096:4683233-4683341 + | ---------------------------------------ATCCACACTGAAATCGGGTTTCGCTAGCAGCGGACTGTCATGATAAATGTGAAAAACAAACAAGTTCGTTGTCGACGAAACCTGCATCATGTGTCGGACAAACAGCTCT-------- |
| droVir3 | scaffold_12942:51501-51599 + | A-----------------------------------ACAATCTACATTGAACTCAGATTTCGTCAGCAGCGGGCTGTGATGATTA----------TGAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAGTGGCAAC----------- |
| droMoj3 | scaffold_6328:4397474-4397588 + | --CTGTGGATAAAAAT-------------------AGTAATCTACATTGAACTCAGGTTTCGTTAGCAACGGGCTGTGATGATTAA--------AAGAACAAGTTCGTTGTCGACGAAACCTGCATGCTATGT-GGAGAGGCAAC----------- |
| droGri2 | scaffold_14853:795296-795391 + | ----------------------------------------TCCACATTGAGCTCGGGTTTCGTCAGCAGCGGGCTGTGATGACTAA--------A-AAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAGAGTCAACG---------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:4259824-4259946 - | TATCAAGTTAAAAAA------CGAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTGTTTTTA----TGCAT--C-----------AA-TTACTTGATATT-CATCCTTG-AACTAAATG----------GTTT-TAGAGCTGCAAGA----AAAATTGT |
| droSim1 | chrX:3274541-3274667 - | TATCAAGTTAAAAAA------CGAAATCATGCTAGATCATTAACAAGTATCATGTAAATTGAATTTTTGTATATAT--C-----------AA-TTACATGTTATT-CGTTCTTG-AACTTAATG----------GTTT-TAGAGCTGCAAGA----AAAATTGT |
| droSec1 | super_4:2464986-2465108 + | TATGAAGTTAAAAAA------CGAAATCATGCTAGATCAAGAACAAATATCATGTAAATTGCTTTTT----TACAT--A-----------AA-ATACAGGATATT-CGTTCTTG-AGCTTAATG----------GTTA-TAGAGCTGCAAGA----AAAATTGT |
| droYak2 | chrX:4178368-4178492 + | TATCAAGTTCAGAAA----TATAAAATCATGCTAGATCTTGGAAAAATATCTAATAGATGGTTTTTA----TACAT--C-----------AA-TCAATTGATATT-TTTCCTTG-AACTAAATG----------GGTT-TAGTGCTGCAGCA----AAAATGGT |
| droEre2 | scaffold_4690:1630508-1630651 - | TATCAAGTTAAAAAA----TATAAAAGCAGTCCAGATCATGGAAAAATATCAAATAGATTGTTTTAT----TTCAGTCCAAACAATACATAA-TCACGCGAGTCA-TAGTATCGAAATTTAGCA----------ATTTATGAAGTTAAAAAAATATAAAGCCAT |
| droAna3 | scaffold_13335:212413-212477 + | TTTGTGGATC--------------------------------------------------------------------------------GA-TTTCCAGTAATT-CTGCATCA-AAATCCGG-ACAAAAAATATTTT-T----------TG----AAAATTTT |
| dp4 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droPer1 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | scaffold_6496:5428540-5428655 - | TTG-TTGTTGGCTGTTAACAACTTGTTCGATTTGGCCTCTGGGTAGACTCTATATA-----------------TGT--A-----------AATATATAT-ATATCTAATCTCTA-ATATCTCAC----------GTTT-TACACCTGCAAAA----AAAACTTC |
| droGri2 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:4262327-4262447 - | ATATGCATATGCTATTATATTGCAATAATTAAATAAT-ACGTTTCGAACTAATGATTTTCAGTTCATTCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACTCGCTGGC-GTA |
| droSim1 | chrX:3277334-3277447 - | ---TGCAT---ATGATATCTTGCAGTAATTTAGTAAT-ACCTTTCGAACACATGATTTTCAG-TCATTCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGC-GGA |
| droSec1 | super_4:2462215-2462328 + | ---TGCAT---ATGATATGTTGCAGTAATTTAGTAAT-ACCTTTCGAACATATGATTTTCAG-TCATTCATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGC-GGA |
| droYak2 | Unknown | --------------------------------------------------------------------------------------------------------------------------- |
| droEre2 | scaffold_4690:1633112-1633231 - | GGAATTGTGTGATATTATGTTACAGTGATTTAATAAT-TCGATTCGAAGTTATGTGCTTTAA-TCATTCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAACTCGTTGGC-GTG |
| droAna3 | Unknown | --------------------------------------------------------------------------------------------------------------------------- |
| dp4 | Unknown | --------------------------------------------------------------------------------------------------------------------------- |
| droPer1 | Unknown | --------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | Unknown | --------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | Unknown | --------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | scaffold_6540:31109889-31110001 - | AACAACGTATGTTACTATATTAAAATAACTAAATAATTAAAACCAAAACCTATCAATTTAAT-CAATAAACG------AAATTTGTTATCTAGCT---TTAAGTACTTGAAAAGCTCATGATA |
| droGri2 | Unknown | --------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:4262501-4262629 - | ATTATATGCATATGCTATTATATTGCAATAATTAAATAATACGTTTCGAACTAATGATTTTCAGTTCATTCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACTCGATGGCGGATGAGA |
| droSim1 | Unknown | --------------------------------------------------------------------------------------------------------------------------------- |
| droSec1 | Unknown | --------------------------------------------------------------------------------------------------------------------------------- |
| droYak2 | Unknown | --------------------------------------------------------------------------------------------------------------------------------- |
| droEre2 | Unknown | --------------------------------------------------------------------------------------------------------------------------------- |
| droAna3 | Unknown | --------------------------------------------------------------------------------------------------------------------------------- |
| dp4 | Unknown | --------------------------------------------------------------------------------------------------------------------------------- |
| droPer1 | Unknown | --------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | Unknown | --------------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | Unknown | --------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | Unknown | --------------------------------------------------------------------------------------------------------------------------------- |
| droGri2 | Unknown | --------------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:4262664-4262783 - | TGGCTTCTATTGCGTAGAAACAAATTTCATTGAGGTAAATACGGTTGGAATTTTGTCTTTTAACTATAAATCCAACCGAATTTGGCTCGGCGAAATTTTTCAGTTTACTGGCGTCGAAAA |
| droSim1 | chrX:3277428-3277474 - | TGGCTTCTACTCTCT--------ACTTCATTGCTTTGCATATGAT---------------------------ATCTTGCAGT-------------------------------------- |
| droSec1 | super_4:2462188-2462234 + | TGGCTTCTACTATCT--------ACTTCATTGCTTTGCATATGAT---------------------------ATGTTGCAGT-------------------------------------- |
| droYak2 | Unknown | ------------------------------------------------------------------------------------------------------------------------ |
| droEre2 | scaffold_4690:1633226-1633277 - | C---TTGTAA-ATGTACAAACAAATCTCAGTGTATAGCTTAAATC---------------------------CACCGGAATT-------------------------------------- |
| droAna3 | Unknown | ------------------------------------------------------------------------------------------------------------------------ |
| dp4 | Unknown | ------------------------------------------------------------------------------------------------------------------------ |
| droPer1 | Unknown | ------------------------------------------------------------------------------------------------------------------------ |
| droWil1 | Unknown | ------------------------------------------------------------------------------------------------------------------------ |
| droVir3 | Unknown | ------------------------------------------------------------------------------------------------------------------------ |
| droMoj3 | scaffold_6359:3791288-3791288 - | T----------------------------------------------------------------------------------------------------------------------- |
| droGri2 | Unknown | ------------------------------------------------------------------------------------------------------------------------ |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:16085272-16085387 - | TTTATAATTATATTATATATAATAGCACTGCTGGCTCATTGGTACATTTCATAAGTACCTTATCAAATGTTCCAATGGTCGGGCAGAGCTATTATTTGTCCATGTTTTGGACTAGA |
| droSim1 | chrX:12424811-12424913 - | TTGATAATTA------------TAGCACTGCTGGCTCATTGGTACATTTCATAAGTACCTTATGAAATGTTCCAATGGTCGGGCAAAGCTATTACTGGTCCATGTTTTGGA-TAGA |
| droSec1 | super_47:142584-142687 - | TTGATAATTT------------TTGCACTGCTGGCACATTGGTACATTTCATAAGTACCTTATGAAATGTTCCAATGGTCGGGCAGAGCTATTACTTGTCCATGTCTTGGAATAGA |
| droYak2 | chrX:10233193-10233294 - | TTGATTACTG------------CAGCACTGCGGGCTCATTGGTACCTTTCATAAGTGCCTTATCCA-GGTTCCAATGGTCCGGCAGAGCTGTC-TTAGTCCTTGTTTTGGAATAGG |
| droEre2 | scaffold_4690:10993681-10993783 + | TCGACTACTG------------TAGCACTGCGGGCCCATTGGTACCTTTCATAAGTACCTTATCAAAGGTTCCAATGGTCTGGCAGAGCTGCT-TTAGTTCATGTTCTGGAGATGG |
| droAna3 | Unknown | -------------------------------------------------------------------------------------------------------------------- |
| dp4 | Unknown | -------------------------------------------------------------------------------------------------------------------- |
| droPer1 | Unknown | -------------------------------------------------------------------------------------------------------------------- |
| droWil1 | Unknown | -------------------------------------------------------------------------------------------------------------------- |
| droVir3 | Unknown | -------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | Unknown | -------------------------------------------------------------------------------------------------------------------- |
| droGri2 | Unknown | -------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:4332472-4332601 + | TAGCCACGCAG--AGGA---------CACACCTG-------AAATTACCCATCTCGAATAGCGTTGTGACTGA-GGTAACTGCGCATCGAATCTACTCAGCGGCGAGGCTATTCAAGTAAGGTTATTTTGGGC----CAGCGACTTTA--CGACC |
| droSim1 | chr2R:2956848-2956977 + | TAGCCACGCAG--AGGA---------CACACCTG-------AAATTACCCATCTCGAATAGCGTTGTGACTGA-GGTAACTGCGCATCGAATCTACTCAGCGGCGAGGCTATTCCAGTAAGGTTGTTTTGGGC----CAGCGACTTTA--TGACC |
| droSec1 | super_1:1974074-1974203 + | TAGCCACGCAG--AGGA---------CACACCTG-------AAATTACCCATCTCGAATAGCGTTGTGACTGA-GGTAACTGCGCATCGAATCTACTCAGCGGCGAGGCTATTCCAGTAAGGTTGTTTTGGGC----CAGCGACTTTA--TGACC |
| droYak2 | chr2L:16988548-16988677 + | TAGAAACGCAG--AGGA---------CACACCTA-------AAATTACCCATCTCGAATAGCGTTGTGACTGA-GGTAACTGCGCATCGTATCTACTCAGCGGCGAAGCTATTCCAGTAAGGTTATTTTGGGC----CAGCGACTTTA--CGACC |
| droEre2 | scaffold_4929:18305702-18305825 - | TAGATACG--------A---------GATACCTA-------AGATTACCCATCTCGAATAGCGTTGTGACTGA-GGTAACTGCGCATCGAATCTACTCAGCGGCAAGGCTATTCCAGTAAGGTTATTTTGGGC----CAGCGACTCAA--CGACC |
| droAna3 | scaffold_13266:1670175-1670300 - | TGGTTTC-CTG--AGGA---------TACGTCCA-------AAATGACTCATCTCGAATAGCGTTGTGACTGATGGTATTTAAATAT------AAATCCGAGACAATGCTATTCTTGTAAAGTCATCTTGACC----AAGCAACTTTTTCTAATC |
| dp4 | chr3:2308599-2308727 + | TATCTCCTGAATCGGAG---------TACGACTG-------AAACAACCCGTCTCGAATAGCGTTGTGACTGAT-GA--CTGCATTTGTAATTTTCTCAGCGGCAGTGCTATTCCAGTTGGGTTGTTTGCGGCCAAACAACAACTATA------- |
| droPer1 | super_2:2480065-2480185 + | GAATCG--------GAG---------TACGACTG-------AAACAACCCGTCTCGAATAGCGTTGTGACTGAT-GA--CTGCATTTGTAATTTTCTCAGCGGCAGTGCTATTCCAGTTGGGTTGTTTGCGGCCAAACAACAACTATA------- |
| droWil1 | scaffold_180700:3161017-3161152 - | TTACTACACAA--AGTGAACAGTTC-GATGACTT-------AAATGCCCAATCTCGAATAGCGTTGTAACTGAT-GA--TTGT-GATATGAGAGAGTCAGCCACTATGCTATACGAGGTGGGGCATTTGTGGGT---AAACAACCAAA--TTACG |
| droVir3 | scaffold_12875:9403376-9403510 + | AAACTATAAAG--TG--TTTTAATGGTTCACTTAAATGGCTAATTGTCTTCTCTCGAATAGCATTATGGCTGAT-GACAAT---TCTGGAATAACATCAGTTGAAATGCCATTCGGGTTAAGGCACTTGAGAAATGGCAGCGA------------ |
| droMoj3 | scaffold_6496:17707880-17708014 - | TGTTGGCGAAC------TTTCAATGGCTCATTTAACTGGCTAATTGCCTTCTCTCGAATTGCATTATGGCCGAT-GACACAATTC-TGCAAAATCATCAGTTGGAATGCCATTCGGGTCAAGGCATTTACGAATCGCCAACGA------------ |
| droGri2 | scaffold_15245:2671305-2671410 + | TTGAATGGCT-------------------------------TATTGCCTTTTCTCGAATTGCATTGTGACTGAT-GAAAAT----TTAGAAATTCATCAGTTAAAATGCCATTCGAGTTAAGGCACTTATGCA-----------TTAA--CAACC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:5200513-5200636 - | GCG-GAAG--ACGA--AC------------AATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACAGGAAAA |
| droSim1 | chr2R:3860388-3860511 - | GCG-GAAG--ACGA--AC------------AATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACAGGAAAA |
| droSec1 | super_1:2832514-2832637 - | GCG-GAAG--ACGA--AC------------AATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACAGGAAAA |
| droYak2 | chr2L:17856053-17856176 - | GCG-GAAG--ACGA--AC------------AATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACAGGAAAG |
| droEre2 | scaffold_4929:17456334-17456457 + | GCG-GAAG--ACGA--AC------------AATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACAGGAAAA |
| droAna3 | scaffold_12430:12714-12838 + | ACG-GAAAA-ATGT--AC------------AATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAATTCAACAGGATAA |
| dp4 | chr3:9267901-9268036 - | ATG-CAAC--ACGA--ACACACACAGAAATAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGATATGCAACTGGATAA |
| droPer1 | super_4:4590324-4590459 - | ATG-CAAC--ACGA--ACACACACAGAAATAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGATATGCAACTGGATAA |
| droWil1 | scaffold_180697:853193-853321 + | GAGAGAAGGAGAGATCAT------------AATGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACAAAAATG |
| droVir3 | scaffold_12875:1241652-1241774 - | GCG-TC----GCTC--AC------A-----AATGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TTTATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACAGAAGAA |
| droMoj3 | scaffold_6496:4307034-4307162 - | ACG-GATATCGCGAATAA------------ACTGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGTTTATATCTAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACAGAAGCA |
| droGri2 | scaffold_15245:9744744-9744853 + | C-------------------------------TGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TTTATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACAAAAGA- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:8046362-8046490 - | CAAAAGAA---CAT------AGTT-G-----------------------------ACGGCGGTA--------------------CCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATT-TGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGA-TCTG-CGA---------A----------------ATACA-CAGTGGTAT |
| droSim1 | chr2R_random:2089209-2089337 - | CTAGAGAA---CAT------TTTT-G-----------------------------ATGGCGGTA--------------------CCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATT-TGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGA-TCTG-AGA---------A----------------ATACA-CAGTGATAT |
| droSec1 | super_1:5591420-5591548 - | CTAGAGAA---CAT------TTTT-G-----------------------------ATGGCGGTA--------------------CCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATT-TGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGA-TCTG-CGA---------A----------------ATACA-CAGTGTTTT |
| droYak2 | chr2R:8904838-8904966 + | CTAAATAA---CAT------TTTT-C-----------------------------ATGGCGTTA--------------------CTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATT-TGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGGTGA-CCTG-CGA---------A----------------ATACA-CAGGGATAT |
| droEre2 | scaffold_4845:17747735-17747863 + | CAGAAAAA---CAT------ATTT-G-----------------------------ATGACGGTA--------------------CCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATT-TGAT--CATCCCCTTGTTGCAAACCTCACGCC--GAAGGTGA-CCTG-CGA---------A----------------ATACA-CAGTGTTAT |
| droAna3 | scaffold_13266:2579688-2579821 + | TAATGGAA---TCA---GTAAGTG-G-----------------------------AAAGGTGTA--------------------CTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATAGGTATT-TGAT--CATCCCCTTGTTGCAAACCTCACGCC--CAAGGTGC-TTTC-CAACGG-----CA------------------ACA-TATCAGCAA |
| dp4 | chr3:405625-405769 - | CCGGATAA---C---------T-----------------GGGTATCCAGGAATCCAGACT------------------------GTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGCATT-TGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGTTGAAT--CCC-ACACCTA-----CACTCTCAT------ATAAT----GATCAT |
| droPer1 | super_2:590063-590227 - | AAGAAAAA---AGT------TGTTATATCCCGGATAACTGGGTATCCAGGAATCCAGACT------------------------GTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGCATT-TGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGTTGAAT--CCC-ACACCTA-----CACTCTCAG------ATAAT----GATCAT |
| droWil1 | scaffold_181141:3254354-3254482 + | AAGT---A---CATTTGTTTAGTT-A-----------------------------AAACGAATT--------------------GTGGGCATTTCGGGCGTGTGATTTGTAGCAAAGTGATATGTACT-TGAT--AATCCCCTTGTTGCAAACCTCACGCCGGAAAGATGT-C-TC--CA---------A----------------ATACATCAG-----T |
| droVir3 | scaffold_12875:19840344-19840491 + | TATGCACAGATCAT------GT-------------------------------CCAGAGTGT--GTAATA-----------TATCTGCGCATTTTGGGCGTGTGATTTGTGGCAAAGTGATGAGC--TTGGATTCCATCCCCTTGTTGCAAACCTCACGCC--AAAGGTGG-C------GCATTTAACCAGCA-----AT------ATAAA-GATTCATGT |
| droMoj3 | scaffold_6496:6364073-6364233 - | TGGATAAA---GAC------TATT-C-----------------------------GGAGTGTTA----TATCTATCATGTGTATTTGCGCATTTTGGTCGTGTGATTTGTGGCAAAGTGATGAGC-TA-TGATTCCATCCCCTTGTTGCAAACCTCACGCT--GAAGGTGA-C------GCATAGCAGCAACA-----ATTGAAAGATATT-CGATTAAAC |
| droGri2 | scaffold_15245:18189031-18189168 + | TAAA---G---CAT------ATTA-A----------------ATTC---------CGAGTGT--G--GTA-----------TTTCTGTGCATTTTGGGCGTGTGATTTGTGGCAAAGTGATGAGC--T-TGATTCCATCCCCTTGTTGCAAACCTCACGCC--GAAGGTGG-C------GCATCTAAGCA----------------ACA-A-TATTAATAT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:10032841-10033044 - | ATT-TTATTTAAGTACAA-------AGATTTTGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACAGGTGACACTGATC---CGGATTTGGTAGTTG-ACAAATCCTCCATG-----------------------------CCGAGATTAGTTTCATTTTGCGTCTTTTGAA------TTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTACAAG-CAACA------CGAA-GT---GA |
| droSim1 | chr2R:8799008-8799211 - | ATT-TTATTTAAGTACAT-------AAATTCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACTGGTGACACTGATC---CGGATTTGGTAGTTG-ACAAATCCTCCATG-----------------------------CCGAGATTAGTTTCATTTTGCGTCTTTTGAA------TTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTGCAAG-CAACA------CGAA-GT---GA |
| droSec1 | super_1:7540579-7540782 - | ATT-TTATTTAAGTACAG-------AAATTCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACTGGTGACACTGATC---CGGATTTGGTAGTTG-ACAAATCCTCCTTG-----------------------------CCGAGATTAGTTTCATTTTGCGTCTTTTGAA------TTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCCGAAATTGCAAG-CAGCA------CGAA-GT---GA |
| droYak2 | chr2R:9968911-9969114 - | TTTTTTATTTAATTACAA-------AGATGCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACAGGTGACACTGATC---CGGATTTGGTGGTGG-ACCCATTCTC-ATT-----------------------------CCGAGATTAGTTTTATTTTGCGTCTTTTGAA------TTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGCAAG-CAACA------TGGA-GT---AA |
| droEre2 | scaffold_4845:15804995-15805201 + | ATT-TTATTTAATTACAA-------AGATGCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACCCAGGTGACACTGATC---CGGATTTGGTAGTCGTACAAATCCTCCATT-----------------------------CCGAGTTAAGTTTCATTCTGCGTCTTTTGAA------TTCGAACAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGCAAG-CAACA------TGTA-GGCA-TA |
| droAna3 | scaffold_13266:5886554-5886734 + | A--------------CCA-------ACGTTTCGGGAAGTGGCCACTACCTCGCAGTCACGTGATGCC---AAAATGCAACTGACACTGATC---CGGAGATGGT------------CCTCCATC---------C-------------------TTGGGATTAGTGTTAATTTGTGTTTTTTTTA------TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTCCTAA-CAACA------AAAA-GT---GA |
| dp4 | chr3:2729279-2729420 - | A-------------------------CGTTGCGGGAATGGGCCACTACCTCGCAGTCACGTGATATC---GGAATGCAA------------------------------------T-----------------------------------------GATCTACGTTAAATTGTGTTTCTT---------TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAG-CAACA------GAAATGT---AC |
| droPer1 | super_2:2918784-2918948 - | TTG-TAAACCAAGAAGAACCAAACAACGTTGCGGGAATGGGCCACTACCTCGCAGTCACGTGATATC---GGAATGCAA------------------------------------T-----------------------------------------GATCTACGTTAAATTGTGTTTCTT---------TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAG-CAACA------GAAATGT---AC |
| droWil1 | scaffold_180745:1541090-1541255 + | TAC-GAGTTCGAGTACAA----TAAATGTTTTGGGAATTGGCCACTACCTCGCAGTCACGTGATGAG---AGA---------------------------------------------------GATGCAAGA------------------------GGACTTTG------TATGCCATTTGCATTTAATATTTCATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGAGCTTTAAAGTCATCA------AGAA-GG---AA |
| droVir3 | scaffold_12875:1889282-1889470 + | A---------------------AAAACGATTCGGGAATTGGCCACTACCTCGCAGTCACGTGATCCA---CAAACGCAGC--------------CGGCTCTGGTGCTTG-GGAAA---------AATACAATTTTCTTTTGTTTTCCTGGGCGCCGCA-------ACGTTTTGCGT----TCA--------TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTGCAG-CCACA------GCGC-GAAGTG- |
| droMoj3 | scaffold_6496:23382296-23382464 - | A---------------------AAAACGATTCGGGAATTGGCCACTACCTCGCACTCACGTGATGCACTCAAAACGCCGACGAGGACGT---------------------CCAAATT--CCAT---------TTTCT--CGTTTTCCTC--------------TGTCGTTTTGCGT----TGA--------TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGCC-----CCAGCAATCCG---------- |
| droGri2 | scaffold_15112:3992495-3992691 + | ATG-TAAT-----GAA------AAAGCGTTCCGGGAATTGGCCACTACCTCGCAGTCACGTGATGCC---ACAAGGCGGGC-ACGCCGTGCAACATCCTCTCTTCGTTT-ACACATCTCCTCTT-----------------------------GAGAGGATTGCGTCGTTCCGCCT----TGAA-------TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTCCCA-CAACA------AGAA-CA---AC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:12782713-12782828 - | TGGGAAAC-----------TGGCGA----ATCTG------------CTCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGGCCAG--------------CTTTCAGCTTCGGTGCC-ATTT-----------------------------------------CACCC------------CGAGCACCAAGAGCATCAGACT |
| droSim1 | chr2R:11518341-11518456 - | TGGGAAAC-----------TGGCGA----ATCTG------------CTCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGGCCAG--------------CTTTCAGCTTCGGTGCC-ATTT-----------------------------------------CACCC------------CGAGCACCAAGAGCATCAGACT |
| droSec1 | super_1:10286785-10286900 - | TGGGAAAC-----------TGGCGA----ATCTG------------CTCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGGCCAG--------------CTTTCAGCTTCGGTGCC-ATTT-----------------------------------------CACCC------------CGAGCACCAAGAGTATCAGACT |
| droYak2 | chr2R:16191830-16191945 + | TGGGAAAC-----------TGGCGA----ATCTG------------CTCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGGCCAG--------------CTTTCAGTTTCGGTGCC-ATTT-----------------------------------------CACCC------------CGAACAGCAAGACCATCAGACT |
| droEre2 | scaffold_4845:13064860-13064974 + | TGGGTAAC-----------TGGCGA----GTCTG------------CTCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGGCCAG--------------CTTTCAGTTTCGGTGCC-ATTT-----------------------------------------CACCC------------CCAGCACCAAGAGCACC-GACT |
| droAna3 | scaffold_13266:13815719-13815830 + | TGGGAAAT-----------TGTCGA----AGCCA------------CTTTGC-GACATTCCCCGTTCTGCGTTGGCCCAAGGTGCACGTGGGGCCGACGA----------CTCTCCGCTTCCGGACCCATTG--------------------------------------------------------------CCGAAAATACATTCTTCA |
| dp4 | chr3:6727705-6727891 - | TGGGAAAC-----------TGGCGA----GGCG-AGGCGAGGACTCCTCTGC-GACATTCACCGTTCAGCGTTCGGCCAGCGAGCACGTGGGTTAC--GCCTGAAGCTCCAATTCGGTTACGGT------TTCGGCTACGGCTACGGCTACGGGTACGGCTACGGCTACGGTACATCCTCCACACTAGACGGCGGGTTGAGGGGGTCGGACA |
| droPer1 | super_2:6950668-6950854 - | TGGGAAAC-----------TGGCGA----GGCG-AGGCGAGGACTCCTCTGC-GACATTCACCGTTCAGCGTTCGGCCAGCGAGCACGTGGGTTAC--GCCTGAAGCTCCAATTCGGTTACGGT------TTCGGCTACGGCTACGGCTACGGGTACGGCTACGGCTACGGTACATCCTCCACACTAGACGGCGGGTTGAGGGGGTCGGACA |
| droWil1 | scaffold_180700:6478759-6478837 - | TGGGAAATACATCTTCGTTTGGCTTTAGTTTCTC------------TTCTGCGGACATTCAATGTTCTGCGTTTGCCCCAAGCGCACGTGG------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | scaffold_12875:2573949-2574010 + | TGGGAAAC-----------TG-CGA----AGCTG------------CTTTGC-GACATTCGACTTGCTGCGTTCGTCGCCGACGCACGTGG------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | scaffold_6496:22657688-22657749 - | TGGGAAAC------------GGCGA----AGCTT------------CTGTGC-GACATTCAACGTTCTGCGTTCGTCGCCGACGCACGTGG------------------------------------------------------------------------------------------------------------------------- |
| droGri2 | scaffold_15112:4702153-4702224 + | TGGGAATT-----------TTGCGA----AGCTGCTGCTGTGGCT--GCTGC-GACATTCAACGTTCTGCGTTGGCCGCCGACGCACGTG-------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:16472690-16472815 - | GTAGGATATCAAAACTATCA-------CTGCAGTTTCAGG-----CTTTTCCCAACTACACCTATTAAT----ACATATTTTA------------------ACGTCCTATTAAAGTTGTAGTTTGGAAAGTTTTGGTTTTGCATTAGAAATC-GCCACTCA |
| droSim1 | chr2R:15134383-15134509 - | GGGGTATATCAAAAATATCA-------CTGCAGTTTCAGG-----CTTTTCCCAACTACATCTATTAAT----ATTTATTTTA------------------ACGTCGTATTAAAGTTGAAGTTTGGAAAATTTTGGTTTTGCATTTGAAATCCGCCACTCA |
| droSec1 | super_1:14027408-14027534 - | GGGGTATATCAAAAATATCA-------GTGCAGTTTCAGT-----CTTTTCCCAACTACATCTATTAAT----ACTTATTTTA------------------ACGTCGTATTAAAGTTGAAGTTTGGAAAATTTTGGTTTTGCATTTGAAATCCGCCACTCA |
| droYak2 | chr2R:12723766-12723891 + | GGAGGATACAAAAAAATCGC-------CTGCAGTTTCAAG-----CTTTTCCCCACTCCTTGCTTTAAT----ACTTATTTTA------------------ACGTCGTATTAAAGCCAGAGTTTGGAAAGTTTTGATTCTGCATTAGAAATC-GCCACCCA |
| droEre2 | scaffold_4845:10619033-10619157 - | GGAGAATACCAAA-CTAGCA-------CTGCAGCTTCAAG-----CTTTTCCCCACTCCTTGCTTTAGT----ACTTATTTTA------------------ATGTCGTATTAAAGCCAGAGTTTGGAAAGTTTTGATTCTGCTTTTTAAATC-GCCACCCA |
| droAna3 | scaffold_13266:4131534-4131677 + | TATTACTATTACAAACATTGTGCAACACTGCCGAATTGGAGACAACTTGGCTGGAATCAATCCATTCATTCTTTTCAATTTTGGCAGCCGACGGGGTAAGACCTCCCTATT-------TAAGTGGTAAAGTGATTTCTTGGAATTAAAGAA---------- |
| dp4 | Unknown | ----------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droPer1 | Unknown | ----------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | Unknown | ----------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | Unknown | ----------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | Unknown | ----------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droGri2 | Unknown | ----------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:16472804-16472925 - | ACAAAT--------CT-----AGACATGATTTTCCCAAGTGCCTGGTATCAGCAAAGTGT-----TATTTTTTATGTTT-------------------------------------------------ATGTAAAGTACACGTTTCTGGTACTAAGTACTTCGAGAAAGTT---------------ACCTGCGTAGGATATCAA |
| droSim1 | chr2R:15134498-15134613 - | AGGAAT--------CT-----AGACATGATTTTCGCAAGTGCCTGGTTTCAGAGAGGTGT-----AATTTTT---G----------------------------------------------------TTGTATAGTACCCTTTTTTGGAACCAAGCCCTTTGAGAAACTT---------------ACCTGCGGGGTATATCAA |
| droSec1 | super_1:14027523-14027641 - | AGGAAT--------CT-----AGACATGATTTTCGGAAGTGCCTGGTATCAGATAGGTGT-----AATTTTT---GTGT-------------------------------------------------TTGTATAGTACACGTTTCTGGAACCAAGCCCTTTGAGAAACTT---------------ACCTGCGGGGTATATCAA |
| droYak2 | chr2R:12723658-12723777 + | AGGACT--------CT--T--GGATCTGATTTTCCCAAGTGCTTAGTATCAGCAAGGTGT-----AATTTTT---GTTT-------------------------------------------------GGTTAAAGTACACGTTACTGGTACTACGTACTTCGAGAAACCT---------------AACTACGGAGGATACAAA |
| droEre2 | scaffold_4845:10619147-10619257 - | AGAAC--------------------CTGATTTTCCCAAGTGCATAGTATCAGCAAGGTGT-----AATTTTT---ATTT-------------------------------------------------GGGTAAAGTACACGTTACTGGTACTAGGTACTTTGAGAAACAT---------------GACTACGGAGAATACCA- |
| droAna3 | scaffold_13266:4131420-4131545 + | TAAAAT--------TCATTGTAAACCATACTTTTTAAG--GAGCAGTATCCACAATTTAA---------------GTTT-------------------------------------------------TTTCGTGGT----ATTTGCGGCATTGCCAACTTTAAGAAAAGTTCAAAGGGCGCTGTTACAAGCTATTACTATTAC |
| dp4 | chr3:8679002-8679138 + | GTCGTT--------CT-----CCATCTCTTTCTCGCGTC-GCGTCGCTTAAACTATGTATGTATGCATTTTGTACATACGGTTAAATTCAAATGTA-------------ATCGGTTCCCAAACGCTCGTTTCATGTTTTCATTTTCTCGAATTTTCACG----------------------------------------TTTAG |
| droPer1 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| droWil1 | scaffold_181096:3840730-3840836 + | GCATT---------AT-----AGAAAACA--------AACGATTGTT----------------------------------------TACTGGCCATTTTGCTAATCTTTT-----------------TGGTAATCTAATC-TTTACGGTATCAAAATTAGTTAGAAAA-T---------------ACTTAATAATTATATTA- |
| droVir3 | scaffold_13042:3503607-3503688 - | ATAAAAGGCAATTCCT--T--AGAATT--TTTCTTCAATTAATTAATTCT--------GT-----TATGTTTTATATT-------------------------------------------------------------TAATTTCCAATAATAAGTTCTTC------------------------------------------ |
| droMoj3 | scaffold_6680:4944926-4945004 - | GTTTAT--------AT---------ATG-------AAAATATTTGATATATGCAA------------TTTAT--------------ACAAAGAACTTTTTGCTA-------------------------------------------------------TTCTAAAAAATA---------------AA------CGAACATCCA |
| droGri2 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:2602040-2602188 + | GG-GATCTC---------------------------CAATTGT--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-CGG-CA-CATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACC--TCAA--------TATG |
| droSim1 | chr3R:2632916-2633065 + | GG-GATCTC---------------------------CAATTGT--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-CGG-CG-CATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACC--TCAAT-------GAAA |
| droSec1 | super_6:2693177-2693327 + | GG-GATCTC---------------------------CAATTGT--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTTTCGG-CG-CATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACC--TCAAT-------GAAA |
| droYak2 | chr3R:7811352-7811500 - | GG-GATCTC---------------------------CAATTGT--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-CGA-CG-CATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAATAAACC--TCAA--------GACA |
| droEre2 | scaffold_4770:2845885-2846032 + | GG-GATCTT---------------------------CAATTGT--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-CGA-CG-C-TTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAATAAACC--TCAA--------GCCA |
| droAna3 | scaffold_13340:5446725-5446870 - | AC-GATCTT---------------------------CAATTGA--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGTT-CGA-TG-CATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--AT-----------T |
| dp4 | chr2:19773774-19773922 - | CG-GATCTT---------------------------TGATTGC--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGCC-CGA-TG-TATTTTCGAGTGTTTGTGTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--TC--------TGAA |
| droPer1 | super_3:2522178-2522326 - | CG-GATCTT---------------------------TGATTGC--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGCT-CGA-TG-TATTTTCGAGTGTTTGTGTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--TC--------TGAA |
| droWil1 | scaffold_181089:11961167-11961347 + | GATAATTTT---------------------------CATTTGTTTTTATTCAAGTTACACCGAAACAAAAAAGAAAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTTTAAAGTGCATTTCCGATGCCATTG-------------TCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--AATGACGACATAAA |
| droVir3 | scaffold_13047:6141838-6142002 - | GT-GGTCTCGTACTGGGTGAAGTGGGGGTCAGTGAATAACAGA--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATAGTGCATT-CAAATGCCATT-------------CTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCA----------AAA |
| droMoj3 | scaffold_6540:16546170-16546300 - | -------------------------------------AACAGA--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATAGTGCATA-CGAATGCCATTG-------------TCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCAA--------ACTC |
| droGri2 | scaffold_14906:11483329-11483464 - | GT-GATATT---------------------------CA---GA--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TTAGTGCATT-CAAATGCCATTG-------------TCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACG-AA--------TAAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:6233844-6233964 + | C--------------GC------GTCCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCAAG--AATTTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAACAGC-----CTAGATCC |
| droSim1 | chr3R:15159284-15159404 - | C--------------GC------GTCCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCATG--AATTTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CTAGATCC |
| droSec1 | super_0:15709450-15709570 - | C--------------GC------GTCCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCATG--ATTTTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CTAGATCC |
| droYak2 | chr3R:10262359-10262479 + | C--------------GC------GTCCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCAAG--AATTTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CTAGTTCC |
| droEre2 | scaffold_4770:15384035-15384155 - | C--------------GC------GTCCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCATG--AATTGTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CTAGTTCC |
| droAna3 | scaffold_13340:867356-867469 - | -----------------------------GATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCTCG-AAGTCATTCCCATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CTAGATTT |
| dp4 | chr2:7233487-7233613 - | T--------------GTCGCGTTGTCCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTAACATACA--AATCCTTTACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CTAGATCG |
| droPer1 | super_0:1094175-1094302 - | T--------------GTCGCGTTGTCCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTAACATAAC-AAATCCTTTACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CTAGATCG |
| droWil1 | scaffold_181108:495-611 + | C--------------G--------ACATGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTAATTATTCAAATCTTTGACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CTA----- |
| droVir3 | scaffold_13047:1194160-1194276 + | C------------CAGC------GATTTTGATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACATTAG--AAGCTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CT------ |
| droMoj3 | scaffold_6540:5225156-5225284 + | AGGTCTAACGTTGAAGC------GATATCAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACATTTC--AACCTATTACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CT------ |
| droGri2 | scaffold_14906:5077444-5077577 - | G--------------ATGACAATGATTTACATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACATTTGAAACTCTCTTACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAACAAACCCTAACTCC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:16561630-16561749 + | TTGACG---------------AATGTCA-------------------------TCCAC--------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCG----CCGTTTCC-----------GTA----ATCCGTAGCACCACATGATTCGGCTTCGTGGTACA-----------------GGATATCATCGGT-TTTTGCTA |
| droSim1 | chr3R:4901723-4901838 - | -----A---------------AATGTCG-------------------------TTCAC--------------------------CTGTACCCCGCAGCCCGAATTATGTGGGAGCTGCG----CCGTTTCC-----------AAA----GTCCGTAGCACCACATGATTCGGCTTCGTGGTGCA-----------------GGATATCATCGGT-TTTTGCTA |
| droSec1 | super_27:174263-174377 - | ---------------------AATGTCG-------------------------TTCAC--------------------------CTGTACCCCGCAGCCCGAATTATGTGGGAGCTGCG----CCGTTTCC-----------GAA----GTCCGTAGCACCACATGATTCGGCTTCGTGGTGCA-----------------GGATATCATCGGT-TTTTGCTA |
| droYak2 | chr3R:5351033-5351167 + | TGGACGTTGCCATCCTGGATTAAACTCA-------------------------TTCAC--------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCG----CCGTTTCT-----------AAA----ATCCGTAGCACCACATGATTCGGCTTCGTGGTGCA-----------------GGACATCAGCAAT-TTTTGGTA |
| droEre2 | scaffold_4770:5101897-5102016 - | CTGACG---------------AATGTCA-------------------------TTCAC--------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCG----CTGTTTTC-----------AGG----ATCCGTAGCACCACATGATTCGGCTTCGTGGTGCA-----------------GGACATCAGCGGT-TTTTGCTA |
| droAna3 | scaffold_13340:13021664-13021782 - | TTGACA---------------AATGTCA-------------------------TTCGC--------------------------CTGTCCTACGCAGCCCGGATTCTGTGGGAGCTGCG----CCGTTCTT-----------TCT----ATCCGTAGCACCACATGATTCGGCTTCGTGGTGCA-----------------GGGCATCATCC-T-GTTGGCTG |
| dp4 | chr2:5900237-5900376 + | TTGACG---------------AATGTCA-------------------------AACACCTC-GCAGGCTCTGCAGCAGACCCTGCTGCACAACGCAGCCCGGATTCTGTGTGTGCTGCG----CTGTGTTC---------TTAAA----AGCCGTAGCACCACATGATTCGGCTGCGTGGTCAG-----------------CCACACCTTCAG--------TA |
| droPer1 | super_19:1637056-1637197 + | TTGACG---------------AATGTCA-------------------------AACACCTC-GCAGGCTCTGCAGCAGACCCTGCTGCACAACGCAGCCCGGATTCTGTGTGTGCTGCG----CTGTGTTC---------TTAAA----AGCCGTAGCACCACATGATTCGGCTGCGTGGTCAG-----------------CCACACCTTCAGT-ATC----- |
| droWil1 | scaffold_181108:2305175-2305323 - | TTGACG---------------AATGTCAAATTTTCTGACTCCTGCAACTCATGTAAGG--------------------------CTTCACCAAGCAGCCCGGATTCTGCGAGTGCTGCG----CTACAACA-----------AGAACTAAGACGTAGCACCACATGATTCGGCTTCATGGTGAA-----------------GTACATCGCAACG-TCATCGTG |
| droVir3 | scaffold_13047:12148438-12148588 - | TTGACG---------------AATGTCA-------------------------AACGGCTTGGCCGGCTCAACA---------GCTGTACAACGAAGCCCGGATACTGTGTGTGTTGCG----CTGTTTA------------GAG----GTACGTAGCACCACATGATTCGGCTTCGTGGTGCACGCAACTGCAACAGA--GGGCGTCAACGGT-ATTTATTA |
| droMoj3 | scaffold_6540:29636954-29637102 + | TTGACG---------------AATGTCA-------------------------AACAGCTTGGCTGGCTTGGTA---------GCTGAACTACGAAGCCCGGGTTTTGTGTGTGCCGCG----CTGTTTTG-------------A----GTACGTAGCACCACATGATTCGGCTTGGTAGTACAGGCTCATTCAACAAATTAGG---CATCAAT-TTTATAGA |
| droGri2 | scaffold_14830:1051305-1051441 + | TTGACG---------------AATGTCA-------------------------AAT---------------------------GCTGTACAGTGAAGCCCGGATTCTGTGTGTGCTGCGTTTGCTGATTTGCCATACACATAAAT----ATACGTAGCACCACATGATTCGGCTTCGTGGTGCTAG---------------CAACTCCATCGCCAGTTAGATA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:25042891-25043017 + | GGAAGG---------------------------------------------------------------------------------------------------ATGCTCTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-GGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACAA-CGAA----G----A------GAGC |
| droSim1 | chr3R:24713787-24713913 + | GGAAGG---------------------------------------------------------------------------------------------------ATGCTCTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-GGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACAA-CGAA----G----A------GAGC |
| droSec1 | super_4:3905684-3905810 + | GGAAGG---------------------------------------------------------------------------------------------------ATGCTCTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-GGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACAA-CGAA----G----A------GAGC |
| droYak2 | chr3R:21454418-21454540 - | GGAAGG---------------------------------------------------------------------------------------------------ATGCTCTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-GGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACTA-CGAA----G----A---------- |
| droEre2 | scaffold_4820:2987415-2987537 - | GGAAGG---------------------------------------------------------------------------------------------------ATGCTCTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-GGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACTA-CGAA----G----A---------- |
| droAna3 | scaffold_13340:14198945-14199070 - | GGTCT----------------------------------------------------------------------------------------------------------TTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-GTTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACAC-CAAA----G----AGTCGGATAGT |
| dp4 | chr2:1883607-1883737 + | CAGCGT---------------------------------------------------------------------------------------------------TTGCTCTTCTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-TGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAACACAA-CGAACCGAA----A------GAGC |
| droPer1 | super_7:2047020-2047150 + | CAGCGT---------------------------------------------------------------------------------------------------TTGCTCTTCTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-TGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAACACAA-CGAACCGAA----A------GAGC |
| droWil1 | scaffold_181108:1735977-1736125 + | GGATGGATGGAGTCCTTTCTATGTGGCAGCG----------------------------------------------------------------------------TCTCT----TGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGTTTGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACAA-C-AA----G----A---GCGCAGC |
| droVir3 | scaffold_12822:2333349-2333515 + | GAGAGG-----------------CTGCAGCTGCTGCCTGATTTTTGATTTTTTTTT-TTTTTTTGTTTC--GCT----------------------------CTTTTGCTCTTCTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-TGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAACACA-------------------------- |
| droMoj3 | scaffold_6540:26449231-26449397 + | GAGAGG---GAGGT----CTCTACTGCAGCTGCTGCCTGAT-----ATTTCTTTTT------------------------------------------------TTTGCTCTTCTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-TGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAATACACACAGC----G----A------AAAC |
| droGri2 | scaffold_14624:3251484-3251700 + | AGAGAGAGAGAGA---------------G--------AAATGTTTGCTTGCTCTCTATCTCTCTGTCTCTCGCCCACTTTCTAGCTTCAACTGCAACTGCAACTGCTGCTCTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-TGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAACACAC-AACACAAAAAAAAAAGAGGAGAGC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:15152661-15152905 - | CAATTAA-TATGTAGTTTA---------------TGGAT-----CCTCTTTCAATGAATTTAGT----ATGCCCAAACTCGAAGGAGTTTCACC------------------------------------------------TCCATAAGAGCGACAGTC-CTGGAGAAGTTATCAGAGCCAAAAAAATTCATA-TGATGATGCATTTTCC--------GTCTCTGAAAACGTCTTCAG-CAGAAGTTGTTTTTAGCGAAGTGAAACTCATT-CGATTTTGATCATACTA-ACGA---CATTGGAT------G-CTTG-----GATCGGCA----GTTTGGTGGAATATA |
| droSim1 | chr3R:6329088-6329350 + | CAATAAA-TATGTAGTTTTGGATACTCGCCAGTCAGGAT-----GCTCTGTCAATGAATTTAGT----ATGCCCAAACTCGAAGGAGTTTCACC------------------------------------------------TCCATAGGAGCGGCAGAC-CTGGAGAAGTTTTCAGAGCCAAAAAAATTCATA-TGATGATGCATTTTCA--------GTCTCTGAAAACTTCTTCAG-CAGAAGTTGATTTTAGCGAAGTGAAGCTCATT-CGATTTTGATCATACTA-ACGACATTTGTGGAT------G-CTTG-----GATCGGCA----GTTTGGTGGAATATT |
| droSec1 | super_25:615309-615568 + | CAATAAA-TATGTAGTTTTAGATACTCGCCAGTCAGGAT-----GCTCTGTCAATGAATTTAGT----ATGCCCAAACTCGAAGGAGTTTCACC------------------------------------------------TCCATAGGAGCGGCAGAC-CTGGAGAAGTTTTCAGAGCCAACAAAATTCATA-TGATGATGCATTTTCA--------GTCTCTGAAAATTTCTTCAG-CAGAAGTTGATTTTAGCGAAGTGAAGCTCATT-CGATTTTGATCATACTA-A---CATTTGTGGAT------G-CTTG-----GATCGTCA----GTTTGGTGGAATATT |
| droYak2 | chrU:8935876-8936155 - | AAAATAAAAGTTGAATTTTGAAAAATAAA--ATTTCCAA-----TTTTTGACCATGATTTTTGAACGTTTGCCGAAAATCGT----GTTTCTGCGACTATAAATATCCGTATTTTGATCATAACTTTCGAAATATTGGTCCAATCA-TGGAATGCCACAC-CTCGTTGAGTTC-----------------------GTAATTAAATTTCCAATCGAACTGTGTTTA---------AAAA-TAAAAGTTGAATTTTGAAAAATAAAATTT--CCAATTTTTGACCATG---------ATTTTTGAAC------G-TTTGCCGAAAATCG--T----GTTTCTGCGACTATA |
| droEre2 | scaffold_4784:21223629-21223900 - | CAAGACG--------CCTTAAA-----GCGAGTTCAGCTTTACTGTTCTA-GAATGCAGTTTAT----ATACCCAAACTCGAAGGAGTTCCACA------------------------------------------------TTAAGAAGAGCAGCAGAAGCAGAAAAAAATGTCTGGACCCTTGAAATTCATTTTGCAAATGCATTTCCATT------GGCTCGGAAATCTTTCTCTGTCAGGTGTTGATTTTTTAAAAGTGGAGCTCATT-CGATTTTGAATATATAAAATAACAGTTCTTGATATGTATGAGTTG-----GATTTGCACCTTGTCTGACAGAAAAAC |
| droAna3 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| dp4 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droPer1 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droGri2 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:17447586-17447758 - | CT-------------------------------------------------------CGTCAGCAAT---------------------CGT-C----CTCGT------------------GTCAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCACTGACAACACTG--ACC-GC--------------TC---------CAG---GGCAAAT--TGTTCATTTTGAAATTGAAATTCTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCAC-AA---CATCTCTCG |
| droSim1 | chr3R:4023089-4023261 + | CT-------------------------------------------------------CGTCAGCAAT---------------------CGT-C----CTCGT------------------GTCAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCACTGACAACACTG--ACC-GC--------------TC---------CAG---GGCCAAT--TGTTCATTTTGAAATTGAAATTCTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCAC-AA---CATCTCTCG |
| droSec1 | super_6:4044375-4044547 + | CT-------------------------------------------------------CGTCAGCAAT---------------------CGT-C----CTCGT------------------GTCAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCACTGACAACACTG--ACC-GC--------------TC---------CAG---GGCCAAT--TGTTCATTTTGAAATTGAAATTCTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCAC-AA---CATCTCTCG |
| droYak2 | chr3R:6285151-6285323 - | CT-------------------------------------------------------CGTCAGCAAT---------------------CGT-C----CTCGT------------------GTCAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCACTGACAACACTG--ACC-GC--------------TC---------CAG---GGCCAAT--TGTTCATTTTGAAATTGAAATTCTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCAC-AA---CATATCTCG |
| droEre2 | scaffold_4770:4217706-4217878 + | CT-------------------------------------------------------CGTCAGCAAT---------------------CGT-C----CTCGT------------------GTCAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCACTGACAACACTG--ACC-GC--------------TC---------CAG---GGCCAAT--TGTTCATTTTGAAATTGAAATTCTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCAC-AA---CATCTCTCG |
| droAna3 | scaffold_13340:5676182-5676384 + | CT-------------------------------------------------------CGTCAGCAAT-------------------CTCGT-CTCCTCTCGT------------------GTCAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCACTGACAACACTG--ACCTGCTGCTGCTGCTGCTCTC---------CAGTTTGGCCAATTTTGTTAATTTTGAAATTGAAATTTTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCACCAAAAACATCTCTCG |
| dp4 | chr2:23856839-23857018 - | CT-------------------------------------------------------CGTCTGAAATA---------------TATATCGT-C----CTCGT------------------GTCAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCACTGACAACACTG--ACC-AT-------------TTC---------CAG---GGCCAAT--TGTTAATTTTGCGATTGAAATTTTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCAC-AA---CATCTCTCG |
| droPer1 | super_3:6633404-6633583 - | CT-------------------------------------------------------CGTCTGAAATA---------------TATATCGT-C----CTCGT------------------GTCAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCACTGACAACACTG--ACC-AT-------------TTC---------CAG---GGCCAAT--TGTTAATTTTGCGATTGAAATTTTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCAC-AA---CATCTCTCG |
| droWil1 | scaffold_181089:8480191-8480341 + | ---------------------------------------------------------------------------------------------------------------------------AAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCACTGACAACACTG--ACC-GC--------------TGCTTTAAACCTGG---GGCCAAT--TGTTCATTTTGAAATTGAAATTTTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCAT-CA---CA------- |
| droVir3 | scaffold_13047:6339512-6339744 + | CTTTATGTCGATGTTTTTTCGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAT-------AAAT-----------------GGAAA----CCATTTGCTCGCAACGCGCAAGCG-CAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCAGTG----CACTG--ACC-GT--------------TG---------CAG--AGGGCAAT--TGTTCAAATTGAAATTGAAATTTTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCACTAA-----------G |
| droMoj3 | scaffold_6540:1739242-1739414 - | CA-------------------------------------------------------AAT-ATCAAT---------------------GGATA----CCATT------------------AAAAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCAGTG----CACTGTAACC-GT--------------TG---------CAG--AGGGCAAT--TGTTCAAATTGAAATTGAAATTTTGTAGCACCATGAGATTCAGCTCTGGCGTGAGTTTCAAACATGCATTCACCAA---AAAATGAAA |
| droGri2 | scaffold_14906:11660076-11660280 + | CTTTATGTTGCTC------------------------------------------------------AAATGGGACCATTCTGTATATC-AAT----CCAAT------CAACGCGCAAGCG-CAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCAGTG----CACTG--ACC-GT--------------TG---------CAG--AGGGCAAT--TGTTCATTTTGAAATTGAAATTTTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCACCAAAT-CAAATCA-A |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:17623934-17624068 - | GATG--AAC---GGAG-AAG--------AA--------AGGAT-G-CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACA-CAGCCCAGTATCAA |
| droSim1 | chr3R:17429586-17429720 - | GATG--AAC---GGAG-AAG--------AA--------AGGAT-G-CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACA-CAGCCCAGTATCAA |
| droSec1 | super_0:17996302-17996436 - | GATG--AAC---GGAG-AAG--------AA--------AGGAT-G-CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACA-CAGCCCAGTATCAA |
| droYak2 | chr3R:18443923-18444058 - | AA-----AT---CGAG-AAG--------AA--------AGGAT-G-CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCACACCAGCCACATCAGCC--ACATCGG |
| droEre2 | scaffold_4820:10463202-10463335 + | GATG--AAC---GAAG-AAG--------AA--------AGGAT-G-CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACACCAGCC--ACACCAG |
| droAna3 | scaffold_13340:8622498-8622632 - | GTTGCCAAA---GGACCAAA--------AA--------AGGAT-G-CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAAAGCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCT-----AGCCTAC-CATCTCACTATC-- |
| dp4 | chr2:6480711-6480794 - | ---------------------------------------------------------------CATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCC----AAGCAGCA--AGCC--------- |
| droPer1 | super_0:306015-306135 - | GATG----TGAAGGAG-CCC--------AA--------AGGAT-GCCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCC----AAGCAGCA--------------- |
| droWil1 | scaffold_181130:11672712-11672848 - | GACG--A-C---GA-CGACGACGCCAACGACAGCAGCAAAGATGTCCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----AAACAACA--------------- |
| droVir3 | scaffold_12822:3936742-3936840 - | G---------------------------------------------CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTGTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTTAGCT----AATCAACA--------------- |
| droMoj3 | scaffold_6540:17209641-17209764 - | ATTA--AAA---GG-G-CAG--------TG--------A-GTC-G-CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTG-CAGCC----AAACAACA-GCGACC-------- |
| droGri2 | scaffold_8129:786-906 - | GATA----A---GGACAAGA--------GAC-------A-GCA-G-TCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGT-TTGGAGTCCAATGTTAACTGTAAGACTGTGTCTTGGTGGTTGCCAGCC----AAGCAACA-AA------------ |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:19558216-19558323 + | CTCT------ATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGCCCAGCGAGA |
| droSim1 | chr3L:18890412-18890519 + | CTCT------ATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCAGCGAAA |
| droSec1 | super_29:261369-261476 + | CTCT------ATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCAGCGAAA |
| droYak2 | chr3L:20989402-20989507 - | CTCT--------ATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCAGCGAAA |
| droEre2 | scaffold_4784:19355664-19355769 + | CTCT--------ATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCAGCGAAA |
| droAna3 | scaffold_13337:17332424-17332537 - | ATCTTATATAACACTATGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCAGCGAAA |
| dp4 | chrXR_group8:7634812-7634919 + | TTCT------TCAATCAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCAGCGAAA |
| droPer1 | super_48:412952-413059 + | TTCT------TCAATCAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCAGCGAAA |
| droWil1 | scaffold_180727:842215-842322 + | CCCTCGC---ATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATACATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTTCATC---A |
| droVir3 | scaffold_13049:13137002-13137114 + | CGACCAGCCAGGATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGTGTCTGCTCAACGTA- |
| droMoj3 | scaffold_6680:14226499-14226603 - | A---------ATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGTGTCTGCTCAGCGTAA |
| droGri2 | scaffold_15110:23882734-23882841 + | TGCC------GCATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGTGTCTCTTCAACGTAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:16698729-16698849 + | TGTTGCTCTT------------T-TGTTTGCATATTATTTGCTCTTTGGTGATTTTAGCTGTATGGTGTTTATGTATATTCCATAGAGCTTTATTACCAAAAACCAAATGGTTTCTGCATTAT---GTTTGAGTTGA |
| droSim1 | vom21g07.g1:730-849 + | TGTTGCTCTT------------T-TGTTTGCATATTATTTGCTCTTTGGTGATTTTAGCTGTATGGTGTATA--AGTATTCCATAGAGCTTTATTACCAAAAACCAAATGGTTTCTGCATTAT---GCTTGAGTTGA |
| droSec1 | super_7:345741-345859 + | TGTTGCTCTT------------T-TGTTTGCATATTATTTGGTCTTTGGTGATTTTAGCTGTATGGTGTATA--AGTATTCCATAGAGCTTTATTACCAAAAACCAAATGGTTTCTGCATTAT---GCTTGAGTTGA |
| droYak2 | chr2R:4404225-4404345 - | GGTTGCTCTT------------T-TGTTTGCATATTATTTGCTCTTTGGTGATTTTAGCTGTATGGTGTGTTTATGTGTTCCATAGAGCTTTATTACCAAAAACCAAATGGTTTCTGCATTAT---GCTTGAGTTGA |
| droEre2 | scaffold_4845:19768375-19768493 + | AGTTGCTCTT------------T-TGTTTGCATATTATTTGCTCTTTGGTGATTTTAGCTGTATGGTGTGTA--TGTGTTCCATAGAGCTTTATTACCAAAAACCAAATGGTTTTTGCATTAT---GCTTGAGTTGA |
| droAna3 | scaffold_12916:15864526-15864643 - | AGTTGCTCTT------------T-TGTTTGCACATTATTTGTTCTTTGGTGATTTTAGCTGTATGGTGTCT---CATATTCCATAGAGCTTTATTACCAAAAACCAAATGGTTTTTGCATTTT---TTCTGAGTTGC |
| dp4 | chr4_group3:8444179-8444302 + | AGTTGATCTT------------T-TGTTTGCACATTATTTGATCTTTGGTGATTTTAGCTGTATGGTGTATATCAAAGATCCATAGAGCTTTATCACCAAAACCCAAATGGTTTTTGCATTTTTTCGCTTGAGTTGC |
| droPer1 | super_1:9895298-9895421 + | AGTTGATCTT------------T-TGTTTGCACATTATTTGATCTTTGGTGATTTTAGCTGTATGGTGTATATCAAAGATCCATAGAGCTTTATCACCAAAACCCAAATGGTTTTTGCATTTTTTCGCTTGAGTTGC |
| droWil1 | scaffold_181132:873333-873452 - | ATTGATTTTG------------A-TTTTCGCATATTATTTGGTCTTTGGTGATTTTAGCTGTATGGTGTATGAGCATAATCCATAGAGCTTTATTACCAAAAACCAAATGGTTTTTGCATTTT---GCTTGAGTTG- |
| droVir3 | scaffold_12963:12862857-12862965 - | TGTTGCCTTT------------TTATTTTGCATATTATTTGCTCTTTGGTGATTTTAGCTGTATGGTGTGCG--CGTATTCCATAGAGCTTTATTACCAAAAACCAAATGGTTTTTGCATT--------------GC |
| droMoj3 | scaffold_6500:7202293-7202399 + | TG--GCTTTT------------T-ATTTTGCATATTATTTGTTCTTTGGTGATTTTAGCTGTATGGTGTGCG--CGTATTCCATAGAGCTTTATTACCAAAAACCAAATGGTCTTTGCATT--------------GC |
| droGri2 | scaffold_14978:831270-831399 + | TGCTGCCCTTTGTTTGCCCTTTTGAGTTTGCATATTATTTGCTCTTTGGTGATTTTAGCTCTATGGTGTGCG--CATAATCCACAGAGCTTTATTACCAAAAACCAAATGGTTTTTGCATT-T---GCTTTCTTTT- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:16697909-16698030 + | CT----------------------------TGC-ACTA---TTTA--------------TCA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTCACGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACA------------------------------------------TGATAT---- |
| droSim1 | zdv96e12.b1:15-131 + | CT----------------------------TGC-ACTA---TTTA--------------TCA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTCACGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACA---------------------------------------------------- |
| droSec1 | super_7:344892-345054 + | CT----------------------------TGC-ACTA---TTTA--------------TCA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTCACGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAACCCA-AAACAGCCACAAATACAGGAATGATTAATGATAT---- |
| droYak2 | chr2R:4405017-4405183 - | CT----------------------------TGC-ACTA---TTTA--------------TCA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTCGCGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAGCGCACCAACCAA-AAACAGCCACAAATACAGGAATGATTAAAAATATCTTT |
| droEre2 | scaffold_4845:19767520-19767683 + | AT----------------------------TGC-ACCT---TTTA--------------TCA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTCGCGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAACCAAAAAACAGCCACAAATACAGGAATGATTTCTAATAT---- |
| droAna3 | scaffold_12916:15865465-15865583 - | CA----------------------------CGC-ACTCCCTTTCA--------------TTA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTCACGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACA---------------------------------------------------- |
| dp4 | chr4_group3:8443145-8443295 + | CT-CTCCCATTCGCTGTCTGTCGACTTCCATGC-ACTT---TTTGTTCTCCTT------TAA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTTTTGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACA---------------------------------------------------- |
| droPer1 | super_1:9894267-9894417 + | CT-CTCCCATTCGCTGTCTGCCGCCTTCCATGC-ACTT---TTTGTTCTCCTT------TAA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTTTTGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACA---------------------------------------------------- |
| droWil1 | scaffold_181061:30518-30658 - | CCTCCCCTCTTCACCATC-------------------T---TTTCCTCTCCCTCCATCATCATTTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTTTTGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGCCA---------------------------------------------------- |
| droVir3 | scaffold_12963:12863840-12863951 - | CA----------------------------CAC-ACAA---TTT---------------TCA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTTT---ACAGTTTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGCCA---------------------------------------------------- |
| droMoj3 | scaffold_6500:7201331-7201445 + | AT----------------------------TGCCACTC---TT----------------TCA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTT-C--ACATATTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGACACCG------------------------------------------------- |
| droGri2 | scaffold_14978:830199-830317 + | AT----------------------------TGC-AATT---TCTT--------------TCA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTCT---ATATCTTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGCCACCGCCT---------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:12681982-12682079 + | CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACAAC |
| droSim1 | chr3R:8791202-8791299 - | CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGATAGCACGAGCAAC |
| droSec1 | super_12:1472230-1472327 - | CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGATAGCACGAGCAAC |
| droYak2 | chr3R:11708953-11709050 - | CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAAAGCACGAGCAAC |
| droEre2 | scaffold_4770:8952402-8952499 - | CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAAAGCACGAGCAAC |
| droAna3 | scaffold_13340:7215188-7215285 - | TGATTTTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGTAACACCTTCAAC |
| dp4 | chr2:17671752-17671849 + | -GAACCTGTGCGACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC |
| droPer1 | super_0:11526558-11526655 + | -GAACCTGTGCGACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC |
| droWil1 | scaffold_181130:4905585-4905682 - | TGAATCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATGCTATCCGGTATACCTTCAGTATACGTAACACGATGAAACACCAACAAC |
| droVir3 | scaffold_12855:414691-414788 - | AGAGCCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCGAC |
| droMoj3 | scaffold_6540:1943729-1943826 + | TGAGCCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC |
| droGri2 | scaffold_14906:12815108-12815201 + | -----CTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:12681982-12682079 - | GTTGTTAGTGCTCTCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCG |
| droSim1 | chr3R:8791202-8791299 + | GTTGCTCGTGCTATCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCG |
| droSec1 | super_12:1472230-1472327 + | GTTGCTCGTGCTATCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCG |
| droYak2 | chr3R:11708953-11709050 + | GTTGCTCGTGCTTTCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCG |
| droEre2 | scaffold_4770:8952402-8952499 + | GTTGCTCGTGCTTTCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCG |
| droAna3 | scaffold_13340:7215188-7215285 + | GTTGAAGGTGTTACCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAAAATCA |
| dp4 | chr2:17671753-17671849 - | GTTGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTCGCACAGGTTC- |
| droPer1 | super_0:11526559-11526655 - | GTTGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTCGCACAGGTTC- |
| droWil1 | scaffold_181130:4905585-4905682 + | GTTGTTGGTGTTTCATCGTGTTACGTATACTGAAGGTATACCGGATAGCATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAGATTCA |
| droVir3 | scaffold_12855:414691-414788 + | GTCGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAGGCTCT |
| droMoj3 | scaffold_6540:1943729-1943826 - | GTTGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAGGCTCA |
| droGri2 | scaffold_14906:12815109-12815201 - | GTTGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAG----- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:20484312-20484397 + | CAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT--------------GGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG |
| droSim1 | chr3R:20323145-20323230 + | GAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT--------------GGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG |
| droSec1 | super_0:20818704-20818789 + | GAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT--------------GGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG |
| droYak2 | chr3R:26013202-26013287 - | GAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT--------------GGCGGTCCTCTCACATTTACATATTCACAGGCGTCGTGAGCTGCG |
| droEre2 | scaffold_4820:7574099-7574184 - | GAAACTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT--------------GGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG |
| droAna3 | scaffold_13340:4690326-4690418 - | CAAGCTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCTTATTTG--------GCCGGTCCTCTCACATCTCCATATTCACAGGCGTCGAGAGCTGCG |
| dp4 | chr2:1751559-1751647 - | GAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCTT----G--------GTCAGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCG |
| droPer1 | super_7:1904970-1905058 - | GAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCTT----G--------GTCAGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCG |
| droWil1 | scaffold_181089:9616822-9616911 - | AAAGTTGCGCCGTAGGTGAGTATC-GGGTTGTGATTGGCTCCT----T------GTGGTAGTCCTCTCACATCTCTATATTCACAGGCGTCGCGAGCTGCG |
| droVir3 | scaffold_13047:780932-781019 + | AAAGCTGCGTCGTAGGTGAGTAAT-CAGTTGTGGGTGGCTTTT----T--------GAAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGTGAGTTGCG |
| droMoj3 | scaffold_6540:4775668-4775755 + | CAAGCTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTCTA----G--------TGAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGAGAGTTGCG |
| droGri2 | scaffold_14906:5529285-5529380 - | GAAATTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTTTT----GTTCTTAGGGAAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGCGAATTGCG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:3767606-3767703 + | GTGGCTGGACAAAAGGT-TGGGGG--ACATTGATCTCGGAGACG-------------G-------------------------CGGTTTAACT--------------------GATCCATTCTCTCACATCACTT---CCCTCACAGTGCACGGTGCTTGTA |
| droSim1 | chr2L:3722744-3722841 + | GTGGCTGGACAAGAGGT-TGGGGG--ACATTGATCTCGGAGACG-------------G-------------------------CGGTTTAACT--------------------GATCCATTCTCTCACATCACTT---CCCTCACAGTGCGCGGTGCTTGTA |
| droSec1 | super_5:1870685-1870782 + | GTGGCTGGACAAGAGGT-TGGGGG--ACATTGATCTCTGAGACG-------------G-------------------------CGGTTTAACT--------------------GATCCATTCTCTCACATCACTT---CCCTCACAGTGCGCGGTGCTTGTA |
| droYak2 | chr2L:3769291-3769388 + | GTGGCTGGACAAGAGGT-TGGGGG--ACATTGATCTCGGAGACG-------------G-------------------------CGGTTTAACT--------------------GATCCATTCTCTCACATCACTT---CCCTCACAGTGCGCGATGTTTGTA |
| droEre2 | scaffold_4929:3814030-3814127 + | GTGGCTGGACAAGAGGT-TGGGGG--ACATTGATCTCGGAGACG-------------G-------------------------CGGTTTAACT--------------------GATCCAATCTCTCACATCACTT---CCCTCACAGTGCGCGGTGCTTGTA |
| droAna3 | scaffold_12916:5837615-5837739 + | GTGGCTGGACAAGAGGT-GAGATAACACGTT-----CTAACCAACTGATATGAAACTA------CGAATGTTTTTATCGCTGTCGATTCGAAC--------------------GA-----TCTCTCATATAACCGTACCTATTACAGTGCGCGGTGTCTGTA |
| dp4 | chr4_group3:4962038-4962146 - | GTGGCTGGACAAGAGGTGTGTGGG--ATACTGATTTTAGAGAAAAAAAAA----------A----------------------CCAT-T--AACGTGAGG--------------CTTCG-TTTCTCACATCATTT-TCCCCTCACAGTGCCCGGTGCCTGTA |
| droPer1 | super_1:6454682-6454788 - | GTGGCTGGACAAGAGGTGTGTGGG--ATACTGATTTTAGAGAAAA------------ATAA----------------------CCAT-T--AACGTGAGG--------------CTTCG-TTTCTCACATCATTT-TCCCCTCACAGTGCCCGGTGCCTGTA |
| droWil1 | scaffold_180708:9298763-9298869 - | ATGGTTGGATAAAAGGT--GGGGT--ACAACAACAACAAAAAT--------------A-------------------------CGAATATAATGGT-AAACTCTC-------TCTCTCAT---CTCTTATCATTT-TCTCCTCACAGTGCGCGTTCACTTTA |
| droVir3 | scaffold_12963:14941260-14941364 - | GTGGCTGGACAAAAGGT-TGGGGC--ACATTGATCTTCAAGAAACTCACAGCCA---G-------------------------CTCATT------------------------TACTCACTCTCTCTC-TCTTCT-CTCCCTCACAGTGCCCGCTGTCTGTA |
| droMoj3 | scaffold_6500:17898451-17898546 - | GTGGCTGGACAAGAGGT-AATTGATCACTCCTATCTCTGTCT-----------------------------------------CTCTTTCTCT--------------------TTCTGACTCTCTCCCA-CTCTT---TATTTGTAGTGCTCGCTGCCTGTA |
| droGri2 | scaffold_15126:4437367-4437497 + | GTGGCTGGACAAAAGGT-AGGAGAGCACATTGATCTTGAAGAAACTTGCAGAAA---A--CTCTCTAATACTCTCAC---------TCCATTT------------CTCTAACTCTCCCTCTCTCTTATTTAACTT---C-ATTTTAGTGCGCGCTGTTTATA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:4343681-4343771 + | CCACCATTCTGACCTGTGAGTTGAT-CGA----TTTCGAGGTTTTG--------------------------------GCACAC------GAATA-------------TAATCTGGAATC-TTTAATTCGCAGTTCCCACCGAAATGT |
| droSim1 | chr2L:4265544-4265633 + | CTACCATTCTGACCTGTGAGTTGAT-CGA----TTTCGAGTTTTTG--------------------------------GC-CAC------AAATA-------------TAATCTGGAATC-TTTAATTCGCAGTTCCCACCGAAATGT |
| droSec1 | super_5:2441095-2441185 + | CCACCATTCTGACCTGTGAGTTGAT-CGA----TTTCGAGGTTTTG--------------------------------GCACAC------AAATG-------------TAATCTGGAATC-TTTAATTCGCAGTTCCCACCGAAATGT |
| droYak2 | chr2L:4375638-4375728 + | CCACCATTCTGACCTGTGAGTTGAT-CGA----TTTCGAGGTTTTG--------------------------------GCAGCC------AAAAA-------------TAATCTGGAATC-TTTAATTCGCAGTTCCCACCGAAATGT |
| droEre2 | scaffold_4929:4420541-4420630 + | CCACCATTCTGACCTGTGAGTTCAT-CGA----TTTCGAGGTTT-G--------------------------------CCAGCC------AAAAA-------------TAATCTGGAATC-TTTAATTCGCAGTTCCCACCGAAATGT |
| droAna3 | scaffold_12916:13781299-13781395 - | TAACGGTTTTGACTTGTAAGAACCA-AAACTACTTTCT--GTAT-C--------------------------------AAAGCC------AGAAA---CTAATCG---TAA--TTGAAAT-TATCTTAACCAGTCCCCATTGAGCTGT |
| dp4 | chr4_group2:339129-339252 + | CCACCATTTTGACATGTAAGTGTCC-ATA---TCCTCGAGGCTCCTGCAATGCACTGCAATGCACTGCAATGACCGCAATGCTG------ACGTA-------------TTATTTATGTTC-TCCGATCCCCAGTTCCCACTGAAATGT |
| droPer1 | super_8:3550415-3550538 - | CCACCATTTTGACATGTAAGTGTCC-ATA---TCCTCGAGGCTCCTGCAATGCACTGCAATGCACTGCAATGACCGCAATGCTG------ACGTA-------------TTATTTATGTTC-TCCGATCCCCAGTTCCCACTGAAATGT |
| droWil1 | scaffold_180772:1844874-1844969 - | TTACAATTCTATCATGTAAGTTAAAACGA----TTAAGTAATTTC---------------------------------ACACTT------ACATATATT---------TATTTAACTTTCTCTTGTCTCCTAGTCCCACTTGAAATGC |
| droVir3 | Unknown | CAGTGGTATTGACCTGTAAGTATG-----------------------------------------------------------------------------------------TTGAATT-TTCTTACTGCAGTTCCGCTGGAGATCG |
| droMoj3 | scaffold_6500:22625692-22625724 + | CCTCCATATTGCTCTGCGTGCAAGA-TGC----GCCCG-------------------------------------------------------------------------------------------------------------- |
| droGri2 | scaffold_15252:16827853-16827948 - | CCACCATTCTGACATGTAACC--AC-TGA----TCCTGATCCTT-G--------------------------------ATTG-CACTGCCCATTT---TGAATGCGTTTTC-------TT-TCTGCTTTGCAGTTCCCACGGAAATGG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:16724780-16724873 - | CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG |
| droSim1 | chr2L:16422879-16422972 - | CGGGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG |
| droSec1 | super_7:371570-371663 - | CGGGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG |
| droYak2 | chr2R:4378132-4378225 + | CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG |
| droEre2 | scaffold_4845:19796345-19796438 - | CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG |
| droAna3 | scaffold_12943:3938325-3938418 + | CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTCCAATACCAGCTG |
| dp4 | chr4_group3:3057660-3057753 + | CGCGTCAACTTTCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--TGCCAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG |
| droPer1 | super_1:4544383-4544476 + | CGCGTCAACTTTCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--TGCCAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG |
| droWil1 | scaffold_180708:1783971-1784066 + | CGTGTTAATTTCCAGGTGAGTTTGAAATTGAAATGCCTAAATTGTTTTGTGTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATATCAATTA |
| droVir3 | scaffold_12963:6536524-6536617 - | CGTGTCAACTTTCAGGTGAGTTTGAAATTGAAATATGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG |
| droMoj3 | scaffold_6500:25691037-25691130 - | CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG |
| droGri2 | scaffold_15252:9753534-9753627 - | CGCGTCAATTTCCAAGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTCCAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:21167397-21167491 - | ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGTTC--TTGGA------C--TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGGATCTTCT |
| droSim1 | chrX:12920203-12920297 + | ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGTTC--TTGGA------C--TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT |
| droSec1 | super_8:3474404-3474498 - | ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGTTC--TTGGA------C--TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT |
| droYak2 | chrX:20343121-20343215 - | ACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--T-AGGATC--TTGGA------C--TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT |
| droEre2 | scaffold_4690:17696754-17696848 - | ACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--T-GGGATC--TTGGA------C--TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT |
| droAna3 | scaffold_13334:1054378-1054469 + | ACGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--T----------TGGAA--TAGC--TCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCT |
| dp4 | chrXL_group1a:9060607-9060705 + | ACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAAT-TGAATCGAATCGA------ATCGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCT |
| droPer1 | super_15:1454063-1454161 + | ACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAAT-TGAATCGAATCGA------ATCGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCT |
| droWil1 | scaffold_180702:162895-162984 - | ATGAATCCATGCAATGTGAGTT--TTTTGATTTT---C--T-----TG--TTTAA------T--TTCGAAAAACTTTAATCGACTGTATTCTATCAGCTGATGGCATCTTCT |
| droVir3 | scaffold_12970:7925725-7925826 - | ACGAATCAATGAAATGTAAGCAGTGCTTGAGCTTATTC--TCTGGCTTCATTTGAC--CA--TTTTCTGATAAGCTCAATTAACTGTTT----GCAGCGGATGCCGCCCTCT |
| droMoj3 | scaffold_6482:1600635-1600734 + | ATGAGTCCATGAAATGTAAGCAGTGTTTGAACTAAATC--TCTGGCTA--CTTGGC--CG--TATATTGATAAGCTCAACTAACTGTTT----GCAGCGGACACCTATTTGG |
| droGri2 | scaffold_15203:11134564-11134665 + | GCGAATCAATACAATGTAAGCAGTGTTTGAACTGAATA--TCTGGTTA--TCCGACTTCA--TATACTGATAAGCTCAATTCACTGTTT----GCAGCGGATGGCGTCTTCT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:6773023-6773109 + | AAGTTCCTCATCTATGTAAATA-TCTAAA-------------------GTTGAACTTGGCCAATG-------------------------------GCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAGTACTTC |
| droSim1 | chr2R:5362602-5362688 + | AAGTTCCTCATCTATGTAAATA-TCTAAA-------------------GTTGAACTTGGCCAACG-------------------------------GCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAGTACTTC |
| droSec1 | super_1:4360092-4360178 + | AAGTTCCTCATCTATGTAAATA-TCTAAA-------------------GTTGAACTTGGCCAACG-------------------------------GCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAGTACTTC |
| droYak2 | chr2R:2355901-2355987 - | AAGTTCCTGATATACGTAAATA-TCTAAA-------------------GTTGAACTTGGCCAACG-------------------------------GCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAATACTTC |
| droEre2 | scaffold_4845:19001852-19001938 - | AAGTTCCTCATATACGTAAATA-TCTAAA-------------------GTTGAACTTGGCCAACG-------------------------------GCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAGTACTTC |
| droAna3 | scaffold_13266:18269903-18269989 + | AAGTTTCTTATCTACGTAAGGA-ACTCAA-------------------TTTT------------------------------TACATTAAACCGAAGCAATTTAACACGTTTCTTATT-TCAGGAGAACGAGTACTTC |
| dp4 | chr3:12187375-12187468 + | AAGTTTCTCATTTATGTAAGGG-ATCGGC-------------------G-AGAGTTTTTCCCACG-GA----ATA---TCATTATATT---------------ATATTGTTATGTGCCTGCAGGAAAACGAGTACTTT |
| droPer1 | super_44:370822-370915 + | AAGTTTCTCATTTATGTAAGGG-ATCGGC-------------------G-AGAGTTTTTCCCACG-GA----ATA---TCATTATATT---------------ATATTGTTATGTGCCTGCAGGAAAACGAGTACTTT |
| droWil1 | scaffold_180697:3635906-3636001 - | AAGTTTCTTATCTATGTAAGACAATCCAC-------------------G-AGGTGGTT------GGGAAGACAAATTTTGAATA-ATT---------------GGATTTTGATTTTTCTACAGGAAAACGAATATTTT |
| droVir3 | scaffold_12875:11727599-11727677 + | AAATTTCTCATCTATGTAAGTG-ATGA---------------------------TGCGTCCATTGGGA----ATA---TCATTT------------------------AATTTGTGTTGGTAGGAAAACGAATATTTT |
| droMoj3 | scaffold_6496:15129877-15129967 - | AAGTTTCTCATCTATGTAAGTA-GTAATA-------------------GGTGTTTGTAGACAT-----------AT--TCAG--------------TTAATTTTCGCATTTGTGTATTGGCAGGAAAACGAATATTTT |
| droGri2 | scaffold_15245:6497403-6497490 - | AAATTTCTCATCTATGTAAGTG-ATGCAAATGAATAAATATTAATCATATTGCCTTTAATCAATG-------------------------------GT------------------CTTGCAGGAGAATGAGTATTTC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:19880562-19880652 - | CTGTCCATTCAAGACGTAAGTGTAAGACTTTCTTGAGTTA---------CCCGCGATGAGTATCTCAAAA--ATTG-----TTACATTTCAGAGCGATAGCTATCCA |
| droSim1 | chr2R:18425639-18425729 - | CTGTCCATTCAAGACGTAAGTGTAAGACTTTCTTGAGTTA---------CCCGCGATGAGTATCTCAAAA--ATTG-----TTACATTTCAGAGCGATAGCTATCCA |
| droSec1 | super_9:3164536-3164626 - | CTCTCCATTCAAGACGTAAGTGTAAGACTTTCTTGAGTTA---------CCCGCGATGAGTATCTCAAAA--ATTG-----TTACATTTCAGAGCGATAGCTATCCA |
| droYak2 | chr2R:19858946-19859036 - | CTGTCCATTCAAGACGTAAGTGTAAGACTTTCTTGAGTTA---------CCCGCGAGGAGTATCTCAAAA--ATTA-----TTACATTTCAGGGCGATAGTTACCCG |
| droEre2 | scaffold_4845:21253645-21253735 - | CTGTCCATTCAAGACGTAAGTGTAAGACTTTGTTGAGTTA---------CCCACGTAGAGTATCTCAAAA--TTTG-----TTACATTTCAGAGCGATAGCTACCCA |
| droAna3 | scaffold_13266:5750531-5750620 - | CTATCGATTCAAGATGTAAGTTTTGAATACTTCTACTCTA---------TCTTGGA-ATGTCTCTCATAA--TTGT-----CCATCTTCTAGAACGATAGCTATCCA |
| dp4 | chr3:7562600-7562686 - | ATGTCCATACAAGATGTAAGTTCGAGAATC--------------CCAAACACATAAGTTCTTTTTTAACA------TCCAAATATTTTGTAGAGCGACAACATTCCA |
| droPer1 | super_2:7758003-7758089 - | ATGTCCATACAAGATGTAAGTTCGAGAATC--------------CCAAAAACATAAGTTCTTTTTTAACA------TCCAAATATTTTGTAGAGCGACAACATTCCA |
| droWil1 | scaffold_180700:5103983-5104075 + | TTATCTATCCAGGATGTAAGTATTTAAA--------GTTATTTTCAT----AATGACGGGAAATCAATGATTTGCATTC--ACTCATTGCAGAGTGATAACCTCCCA |
| droVir3 | Unknown | ----------------------------------------------------------------------------------------------------------- |
| droMoj3 | scaffold_6496:14788216-14788309 + | TTATCTCTACAGGAGGTAAGGACCAATTGGTA--AAGT------GAGAAATTGGAAGAAATTTATTGAAA--TTTA---TACTCGTGTTTAGGACAAGGAGTTCACA |
| droGri2 | Unknown | ----------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:18118586-18118686 + | CTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAA----TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGA |
| droSim1 | chr3R:17925969-17926072 + | ATTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATA-TTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGA |
| droSec1 | super_0:18476145-18476248 + | ATTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATA-TTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGA |
| droYak2 | chr3R:18962287-18962391 + | GTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATATTTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGA |
| droEre2 | scaffold_4820:9960766-9960869 - | CTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATA-TTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTCGA |
| droAna3 | scaffold_13340:9102978-9103081 + | GTTCGTGCTTAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATA-TTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTATGAGGACCTGGA |
| dp4 | chr2:12275938-12276041 + | GTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTAACCAACCTTT-ATTGTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGGTACGAGGATCTCGA |
| droPer1 | super_0:8195066-8195169 - | GTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTAACCAACCTTT-ATTGTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGGTACGAGGATCTCGA |
| droWil1 | scaffold_181130:12259759-12259863 + | ATTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATATTTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGATACGAGGATCTCGA |
| droVir3 | scaffold_13047:8363181-8363284 - | GTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTCACAACAAAT-TTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGATCTGGA |
| droMoj3 | scaffold_6540:27812506-27812608 + | CTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTCACAACAAT--TTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGGTACGAGGATTTGGA |
| droGri2 | scaffold_15074:1256125-1256227 + | GTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAAACTCTCAACAAT--TTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGATCTGGA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:16679012-16679095 - | ATTCTGACCGTGCACGTGAGTTTTTGAGCCAGGAATAT--------AGTTC----T-------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAA |
| droSim1 | chr3R:4780974-4781057 + | ATTCTGACCGTGCACGTGAGTTTTTGAGCCAGGAATAT--------AGTTC----T-------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAA |
| droSec1 | super_27:54817-54900 + | ATTCTGACCGTGCACGTGAGTTTTTGAGCCAGGAATAT--------AGTTC----T-------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAA |
| droYak2 | chr3R:5477803-5477886 - | ATTCTGACCGTGCATGTGAGTTTTTGAGCCAGGAATAT--------AATTC----T-------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAA |
| droEre2 | scaffold_4770:4975828-4975911 + | ATTCTGACCGTCCACGTGAGTTTTTGAGCCATGAATAT--------AATTC----T-------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAA |
| droAna3 | scaffold_13340:7952070-7952154 - | GTGGTGACGGTGCATGTGAGTCTTTGAACCAGGAATAT--------AATTT----G-------TATATATTGGTTCAAATCGCTCGTAGAATCCTCCCTGGCAA |
| dp4 | chr2:12756663-12756757 + | ATTGTGACGATGCATGTGAGATTTTGAATCTAATATAT--------AATATAATCCGTACGTGTAT-ATATGGTTCAAATTACTCGTAGAACCCTCCCTGGCAA |
| droPer1 | super_0:7702112-7702205 - | ATTGTGACGATGCATGTGAGATTTTGAATCTAATATAT--------AATATAATCT-TACATGTAT-ATATGGTTCAAATAACTCGTAGAATCCTCCCTGGCAA |
| droWil1 | scaffold_181108:2184466-2184552 + | ATTCTGACCGTACATGTGAGTCTTTGAATCAGGAATAT--------ATTATCA--T-------TATATATTGGTTCGAAATGCTCGTAGAATCCACCTTGGCAA |
| droVir3 | scaffold_13047:12031331-12031423 + | ATTGTCACGGTGCATGTGAGTCATTGAACCAGGAATATATGTATGTAATTC----T-------TATATATTGGTTCAAATTTCTCGCAGAATCCGCCCTGGCAA |
| droMoj3 | scaffold_6540:29750589-29750676 - | ATTGTGACAGTGCATGTGAGTCTTTGAGCCAGGAATAT--------ATGTTCATCT-------TAT-TATTGGTTCAAATCTCTCGTAGAATCCTCCCTGGCAA |
| droGri2 | scaffold_14830:1201859-1201943 + | ATTGTCACTGAGCATGTGAGTCTTTGAGCCAGGAATAT--------AATTG----T-------TATATATTGGTTCAAACAACTCGTAGAATCCGCCCTGGCAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:22687056-22687144 - | A--AATCCAAAAGAACGGTGGGTAGAACTTT-GATTAATATTGCTTGAAAA-ATATTAGTC-----------AAAGA----------------------------------------TTT-------------TCCCCATAGATTTATCAATTTCGG |
| droSim1 | chr3R:22517515-22517602 - | T--AATCCAAAAGAACGGTGGGTAGAACTTT-GATTAATATTGCTTGA-GA-ATATTAGTC-----------AAAGA----------------------------------------TTT-------------TCCCCATAGATTTATCAATTTCGG |
| droSec1 | super_13:1460550-1460637 - | T--AATCCAAAGGAACGGTGGGTAGAACTTT-GATTAATATTGCTTGA-GA-ATATTAGTC-----------AAAGA----------------------------------------TTT-------------TCCCCATAGATTTATCAATTTCGG |
| droYak2 | chr3R:23804845-23804934 + | C--AATCCAAAAGAACGGTGGGTAGAACTTT-GATTAATATTGCTTGCAAG-ATATTAGTC-----------AAAGG----------------------------------------T------------TTTTCCCCATAGATTTATCAATTTCGG |
| droEre2 | scaffold_4820:5353889-5353978 + | A--AATCCAAAAGAACGGTGGGTAAATCTTT-GATTAGTATTGGTTTCAAT-ATATTAGTC-----------AAATG----------------------------------------T------------TTTTCCCACTAGATTTATCAATCTTGG |
| droAna3 | scaffold_13340:16646757-16646843 + | C--GATATAAAAAAGCGGTAGGT-----TTC-AACCAA-ATTTCCTTTGAGAGT-TCAGTT-----------AA------CTTTATATA------------------------------T-------------TCTTTTTAGCTTCACTAACTTCGG |
| dp4 | chr2:4781321-4781418 + | A--AATAATTCAGAGCGGTGGGTAGTCTCTC-ATATATAGTTATAAAA-GA-AC-----------GAACACCAGTGGTTAAGCAATGCA------------------------------T-------------TTCTTGTAGATTCATCAATTTCGG |
| droPer1 | super_19:478308-478405 + | A--AATAATTCAGAGCGGTGGGTAGTCTCTC-ATATATAGTTATAAAA-GA-AC-----------GAACACCAGTGGTAAAGCAATGCA------------------------------T-------------TTCTTGTAGATTCATCAATTTCGG |
| droWil1 | scaffold_181130:2629008-2629094 + | C--AATTTGTCAGAACGGTATGG---------------TAGTGCAAGAAAG-CCGAAATTC-----------AAAA-----------------------------------------ACACCCTAATTGTAACAATTTGCAGATTTGTCAACTTTGG |
| droVir3 | scaffold_13047:12018101-12018191 - | C--GATCTAAAGAAACGGTACGGATT--GTT-TATTTAAA-TGCTTTA-------------------------------------TATA----------------TTTATCTATAA-GCTATCT------TTTTGTTTGCAGTTTCATTAACTTTGG |
| droMoj3 | scaffold_6540:29763927-29764041 + | C--GATTTAAAAAAACGGTGTGTAAATATGG-ATTATTATTTATAAAT-TA-TC-----------GAAAACTTAACTTCTAA---TGTT----------------TTTATATTTAT-ATTTTCA------ACATACTCTCAGTTTCATCAACTTCGG |
| droGri2 | scaffold_14624:2192647-2192787 - | ATTGATATCAAGAAGCGGTACGTTCTACATTTGGT-TGAACTATTCTT-GA-ACTTGAGCCGAAAAAACTTTAGCTGTA-TTTTAAACATTCTTTTTCAATCTCTTTTGTGTGTGTGT------------TTTTATTTGCAGTTTCATTAACTTTGG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:26617343-26617433 - | CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAAT------------AAAAGTA-----T-GCCGAACTCGC-------AGGCGACGGATGCGCGA |
| droSim1 | chr3R:26257486-26257576 - | CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAAT------------AAAAGTA-----T-GCCGAACTCGC-------AGGCGACGGATGCGCGA |
| droSec1 | super_4:5435200-5435290 - | CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAAT------------AAAAGTT-----T-GCCGAACTCGC-------AGGCGACGGATGCGCGA |
| droYak2 | chr3R:27538983-27539073 - | CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATTGGGACGGCCGTTAAT------------AAAAGTA-----T-GCCGAACTCGC-------AGGCGACGGATGCGCGA |
| droEre2 | scaffold_4820:1381504-1381594 + | CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATTGGAGCGGCCGTTAAT------------AAAAGTA-----T-GCCGAACTCGC-------AGGCGACGGATGCGCGA |
| droAna3 | scaffold_12911:4366271-4366356 + | CACTGTGCTGGAGAGGTAATCTTTGAATAATTATCTGTGAGTTGTGGCATCTAAT------------GATTGT-----------TATCTTCC-------AGACGTCGCATGCGTGA |
| dp4 | chr2:577090-577184 + | CACTGTGCTGGAGCGGTAAGT----------CCATGAATTGCATCCCCCTTTGATTATTCTTTAATCTGG---AAATCCC-TGTGATCCCAT-------AGACGACGGATGCGCGA |
| droPer1 | super_7:3361274-3361368 + | CACTGTGCTGGAGCGGTAAGT----------CCATGAATTGCATCCCCCTTTGATTATTCTTTAATCTGG---AAATCCC-TGTGATCCCAT-------AGACGACGGATGCGCGA |
| droWil1 | scaffold_181130:10168431-10168520 - | AACTGTATTAGAAAGGTATAATGAATAAACCAATTTGAATAG-CAAACCATTAAA------------TCAATTT-----C-CTTTTTTGTCT-------AGACGACGTATGCGTGA |
| droVir3 | scaffold_13047:11434928-11435028 - | CACAGTGCTGGAGAGGTGGGT-GCATCCAC---------ATCAGCTGCT--TGATAACCATTTGT--AAATGTAAATCCTCCTTTAACTCG-TTTGAACAGGCGACGCATGCGCGA |
| droMoj3 | scaffold_6540:30312688-30312787 + | CACAGTGCTGGAGAGGTGGGA----------GCATTGATTTCACCACCCATAAG--ACACATTCT--CACAGTTTTTCTTGCT-TAATTCC-TTTGTACAGGCGGCGCATGCGCGA |
| droGri2 | scaffold_14624:1473562-1473665 - | CACAGTGCTGGAAAGGTGATTCAAAT-----CCATAAGCCACAATCTTCTT-AAATATTATTTTCGCTAA---TGCT--A-TTTGTACTCGCTTTGATTAGGCGTCGCATGCGGGA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:27579231-27579328 - | TGGCCTTTTCTCAAGGTATAATGGAAATAGATTTTAAT------CGCAGGC--------------GCGTCAGTGGT---------------TGA--ATTAAAATTCATTTTCATTTGCAGTTACTGGATACAACA |
| droSim1 | chr3R:27196220-27196317 - | TGGCCTTCTCCCAAGGTATAATGGAAATAGATTTTAAT------CGCTGGC--------------GCGTCAGTGGT---------------TGA--ATTAAAATTCATTTTCATTTGCAGTTACCGGATACAACA |
| droSec1 | super_31:233822-233919 - | TGGCCTTCTCCCAAGGTATAATGGAAATAGATTTTAAT------CGCTGGC--------------GCGTCAGTGGT---------------TGA--ATTAAAATTCATTTTCATTTGCAGTTACCGGATACAACA |
| droYak2 | chr3R:28513868-28513965 - | TGGCCTTTTCCCAAGGTATAATGGAAATAGATTTTAAT------CGCAGGC--------------GCGTCAGTGGT---------------TGA--ATTAAAATTCATTTTCATTTGCAGTCACCGGATACAACA |
| droEre2 | scaffold_4820:396401-396498 + | TGGCCTTTTCGCAAGGTATAATGGAAATAGATTTTAAT------CGCAGGC--------------GCGTCAGTGGT---------------TGA--ATTAAAATTCATTTTCATTTGCAGTCACCGGATACAACA |
| droAna3 | scaffold_12911:3510618-3510715 + | TGGCATTCTCCCAAGGTATAATGAAAATTGATTTTAAT------CACACGG--------------ATCGGAGTGGC---------------AAA--ATTAAAATTCATTTTCATTTGCAGTCACGGGATACAATG |
| dp4 | chr2:14711225-14711322 + | TGGCCTTCTCCCAAGGTACAATGGAAATAGATTTTAAT------CGGGTTT--------------CGTTTGGCGGT---------------GAA--ATTAAAATTCATTTTCATTTACAGTGACCGGCATCAACA |
| droPer1 | super_0:5703122-5703219 - | TGGCCTTCTCCCAAGGTACAATGGAAATAGATTTTAAT------CGTGTTT--------------CGTTTGGCGGT---------------GAA--ATTAAAATTCATTTTCATTTACAGTGACCGGCATCAACA |
| droWil1 | scaffold_181130:8196915-8197021 + | TGGCATTTTCTCAAGGTGAAATGAAAATAAATTTTAATTCGGATAGAAAGCTAAT--CTAAT--------TGT-AT---------------TGC--ATTAAAATTCGTTTTCATTTGCAGTATCTGGTCTAAATA |
| droVir3 | Unknown | TGGCATTCTCTCAAGGTAT---GTACATATTTTTAAAT-----------------------------------------------------TTA--ACCAGTATTTACTTTTGTTCACAGTGACCGGCATAAATA |
| droMoj3 | scaffold_6540:30646887-30646982 + | TTGCCTTCTCTCAAGGTAAG---TGC------TTTGACTTAGCA--AAAGTTATTTACTAGAAGTGTTTCTCTGC----------------------------TTTCGTTTCATCCACAGTGACCGGTGTAAATA |
| droGri2 | scaffold_14624:997050-997159 - | TGGCCTTTTCACAGGGTATGCAGAGCTTG-ATTAT--T------TGATTGC--------------TCATTT--TACACATTATAAATAAATTATATATATATATACATATGTTATTGCAGTGACTGGCGTAAATA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:20164939-20165032 + | TCATGGGCTACGACGGTGAGTG-----ATGCTCCAGTTAGCTTGGCTGAGTG-------AGGATTTA------------AGTCCTGGGAC-----ATCTCTCTTGCAGTCAAGATCCTGAAAG |
| droSim1 | chr3R:19998542-19998635 + | TCATGGGCTACGACGGTGAGTG-----ATGCTCCAGTTAGCTTGGCTGAGTG-------AGGATTTA------------AGTCCTGGGAC-----ATCTCTCTTGCAGTCAAGATCCTAAAAG |
| droSec1 | super_0:20503496-20503589 + | TCATGGGCTACGACGGTGAGTG-----ATGCTCCAGTTAGCTTGTCTGAGTG-------AGACTTTA------------AGTCCTGGGAC-----ATCTCTCTTGCAGTCAAGATCCTAAAAG |
| droYak2 | chr3R:26340571-26340664 - | TCATGGGCTACGACGGTGAGTG-----ATGCTCCAGATAGCTTGACTGGGTG-------AGGATTTA------------AGTCCTGGGAC-----ATCTCTCTTGCAGTCAAGATCCTGAAAC |
| droEre2 | scaffold_4820:7895693-7895786 - | TCATGGGCTACGACGGTGAGTG-----ATGCTCCAGATAGCTTGGCTGAGTG-------AGGACTTA------------AGTCCTGGGAC-----ATCTCTCTTGCAGTCAAAATCCTAAAAC |
| droAna3 | scaffold_13088:204245-204339 + | TCATGGGCTACGACAGTGAGTG-----ATGCTCCAGATAGGTTGGCTTAGGAAGTC------ATTAA------------AGCCCTGGGAT-----GTCTCTCTTGCAGTTAAGATCCTGAAAC |
| dp4 | chr2:18646206-18646298 - | TGATGGGCTACGATGGTAAGAG--C---TAGC---------C-----ACACAAATTATTAGTATT----------TCTATTTCTCAAAATATTT-CTTTCTTTTGCAGTCAAGATACTAAAGC |
| droPer1 | super_3:1376406-1376498 - | TGATGGGCTACGATGGTAAGAG--C---TAGC---------C-----ACACAAATTATTAGTATT----------TCTATTTCTCAAAATATTC-CTTTCTTTTGCAGTCAAGATCCTAAAGC |
| droWil1 | scaffold_181108:4541725-4541808 - | TAATGGGTTATGACAGTAAGTTAGC---TGGTAAAGTTGATTTCT------------------TTTA------------ACTAATGT-GT-----ATATTTACTGTAGTAAGAATTTTAAAGC |
| droVir3 | scaffold_13047:3497490-3497590 + | TTGTGGGCTACGAAAGTAAGTA------TTTACTTGATAACTCG------TT-------AAACCTAAAG--TCTGTTAACCACTCTTATAACTATG-CATCTAAACAGTTAAGGTACTAAAGA |
| droMoj3 | scaffold_6540:20508341-20508431 + | TAATGGGCTACGATGGTAAATG--CTGATGTTCATGAATATTTATCCAAGTA-------ATTT------------------CTTTACGTT-----GTCTTCTTAACAGTTAAGGTTTTGAAAA |
| droGri2 | scaffold_14906:156637-156731 + | TGGTGGGCTATGATAGTGAGTT--G--ATTCTATT---------------GTAATAATCA------AATCGTTTTTGTTATTTTATAAACA---TGCCATTTTAACAGTCAAGATACTCAAGA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:10120620-10120707 - | CTCCAAGCTTTTCCAGTAAGTATAGAGAGGATGTGATTGGTAAAT------TCCAAA----------GTT-----------------CACCTCTCTCCATAC-TTAGTCGTCGAGGGGTTAT |
| droSim1 | chr2R:8883298-8883385 - | CTCCAAGCTTTTCCAGTAAGTACAGAGATGATGTAATGCGTAAAT------TCCAAA----------GTT-----------------CACCTCTCTCCATAC-TTAGTCGTCGAGGGGTTAT |
| droSec1 | super_1:7628246-7628333 - | CTCCAAGCTTTTCCAGTAAGTATAGAGAGGATGTAATGCGTATAT------TCCAAT----------GTT-----------------CACCTCTCTCCATAC-TTAGTCGTCGAGGGGTTAT |
| droYak2 | chr2R:10057668-10057755 - | CTCCAAGCTGTTCCAGTAAGTATAGAGGGGATGTGATGGGTAAAT------TCCAAA----------GTT-----------------CACCTCTCTCCATAC-TTAGTCGTCGAGGGGTTAT |
| droEre2 | scaffold_4845:15723071-15723158 + | CTCCAAGCTGTTTCAGTAAGTATAGAGAGGATGTGATGGGCAAAA------TCCAAA----------GTT-----------------CACCTCTCTCCATAC-TTAGTCGTCGAGGGGTTAT |
| droAna3 | scaffold_13266:5804278-5804360 + | CTCTAAACTTTTTCAGTGAGTACTTGTAATATA-AATCCATAAA--------TCAAA----------ACT-----------------CACTT-TTTCCA-AC-TTAGTCGCCGTGGTGTGAT |
| dp4 | chr3:17369366-17369470 - | CTCAAAGCTCTTCCAGTGAGTACACAATTCAATTCCTCGGCAAGGCTATCGTCTGAAACTAATTTCCCTT-----------------CACTTATCCCTGCCCTGCAGTCGTCGCGGCGTCAT |
| droPer1 | super_31:422912-423016 + | TTCAAAGCTCTTCCAGTGAGTACACAATTCAATTCCTCGGCAAGGCTATTGTCTGAAACTAATGTCCCTT-----------------CACTTATCCCTGCCCTGCAGTCGGCGCGGCGTCAT |
| droWil1 | scaffold_180700:1839743-1839828 + | TTCCAAATTGTTCCAGTAAGTTAAAA-----TGATCTAAAATCAT------TTCAAA----------T-T----------GATT---CAATAATCTCTTCCA-TTAGTCGACGCGGTGTCAT |
| droVir3 | scaffold_12875:17586457-17586541 + | TTCCAAACTATTTCAGTAAGTAGCA------GGTGCTGAGTGCAT------G----A----TTGTCTCTA----TATCTT--------GATT-----ATCTTTGCAGTCGACGCGGGGTTAT |
| droMoj3 | scaffold_6496:11208550-11208642 + | TTCCAAGCTGTTTCAGTAAGTAGAGCACGCATTTCCAGTACCCAACTA----------------TTCGTTACTATATCTG--------TACA-----ATTTTTGTAGTCGACGCGGGGTTAT |
| droGri2 | scaffold_15245:14096515-14096602 - | TTCCAAACTGTTTCAGTAAGTGGTAACACA-ACTACTATGTTTGT------GC-AAC----------ATT----------TAATGGACAG-T-----ATCTTTGCAGTCGACGGGGAGTTAT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:20314319-20314517 + | CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCCGAAAA-TGA--------------------------------------T----CCCTTTC-TCCCCTTTTCCCAACACA--T------------TTGT----------------------------------ATCCC-----ACTTCCTGCGCGTCTTCGTGGATTT-----------------------GTAA------CTGCTTC-AATGG------C--TGGACGGTT-TAGATATCTTCTTCAACA |
| droSim1 | chr3R:20155121-20155319 + | CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA-ATA--------------------------------------T----CCCTCTC-TCCCCTTTTCCCGACACT--T------------TTGT----------------------------------AACCC-----ACTTCCTGCACGACTTCATGGATTT-----------------------GTAA------CTGCTTC-AATGG------C--TGGACGGTT-TAGATATCTTCTTCAATA |
| droSec1 | super_0:20650438-20650636 + | CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA-ATA--------------------------------------T----CCCTCTC-TCCCCTTTTCCTCACACA--C------------TTGT----------------------------------ATCCC-----ACTTCCTGCGCGACTTCATGGATTT-----------------------GTAA------CTGCTTC-AATGG------C--TGGACGGTT-TAGATATCTTCTTCAACA |
| droYak2 | chr3R:26186848-26187051 - | CCGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAAAATA--------------------------------------T----CCCTTTC-CCTCTTTTTTCCAACACATTC------------TTGT----------------------------------ATCCC-----ACTTTTTTTGCGCCTTCTTGGATGT-----------------------GTGA------CTGCTGC-AATGG------CCATGGACTGTT-TAGATATCTTCTTCAATA |
| droEre2 | scaffold_4820:7744417-7744612 - | CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA-ATA--------------------------------------T----CCCTTTC---CCCCTTTCCCAACACA--C------------TTGT----------------------------------ATCCC-----ACTTCTCGCGCGAC-TCTTGGACTT-----------------------GTGG------CTGCTTC-ACTGG------C--TGGACTATT-TAGATATCTTCTTCAACA |
| droAna3 | scaffold_13088:356279-356461 + | CCGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCTC-------ATCGCCGGCCC-----------TTTCGCGAAAGCTCTACCCAAACTCATCCCCTGAAAACC-------------------------------------------TTTTTTC-C------------CCCCATT--T------------TCTT----------------------------------CCCTT-----ACTGTTTTTGCAC---TTTGGATTT--------------------TATGTGGC-----CTGC------TGG------A--TGGCTTCTT-CAGATATATTTTTCAACA |
| dp4 | chr2:18479367-18479560 - | CCGAACCGTATCCGGGTGAGTTTTGTGGAGTT-TAAAGTTAACA-------ATCGCCGACAATC----A--AATTACGCGAAAGCTCTACCCAAACTCATCCCTCACAA-------------------------------------------TTGTTTTCCT-CC---------CCCACCAAA--AATCTCCCTCACCCTGT----------------------------------AAATC-----ACT-------------------------------------------ATGCGGCT---GCTGC------TGGTATTCGGCTTGGACTGTTCCAGATATCTTCTTCAATA |
| droPer1 | super_3:1203012-1203205 - | CCGAACCGTATCCGGGTGAGTTTTGTGGAGTT-TAAAGTTTACA-------ATCGCCGACAATC----A--AATTACGCGAAAGCTCTACCCAAACTCATCCCTCACAA-------------------------------------------TTGTTTTCCT-CC---------CCCACCAAA--AATCTCCCTCTCCCTGT----------------------------------AAATC-----ACT-------------------------------------------ATGCGGCT---GCTGC------TGGTATTCGGCTTGGACTGTTCCAGATATCTTCTTCAATA |
| droWil1 | scaffold_181108:4383442-4383643 - | CTGAACCATATCCAGGTGAGTTTTGTAGAGTTTTAAAGCTATAA-------ATCGCCGGTAAATAGACGTTAAAGACGCGAAAGCTCTACCCAAACTCAC-CCCGG-AAA------------------------------------------TTTTTTTATT-C-T-CTTTTTTCCCAACAAA--A------------ATAA----------------------------------TGACA-----ATTT-------A---TCTTGGAAAT--------------------TTGGTAA------ACACTTTAAATAA------T--TGTATATAT-TAGATATATTTTTCAATA |
| droVir3 | scaffold_13047:3684405-3684633 + | CCGAGCCGTATCCGGGTGAGTTTCGTAGAGTT-TAAAGCTCTTA--CTTTGCTCGCTGGCAC----GC-----CCACGCGAAAGCTCTACCCAAACTCAC--TATGCAAACCCCCAACCCATACCCAAATCCA--------------------------------------------------------------------------------TGCTCCTTGTCTCTCTCTCTCTCTCTTTCTCTC-----TCTCTCT-------------CTCTCTCTCCACTTTTGTTTCATGCTGCAC---TCGC------TGGCTCTTG---TTGAATGTT-CAGACATATTCTTTAATA |
| droMoj3 | scaffold_6540:20694202-20694463 + | CCGAGCCCTATCCCGGTGAGTTTCGTAGAGTT-TAAAGCTCACA--CTTTGCTCGCCAACAA----GC-----GCACGCGAAAGCTCTACCCAAACTCAC--TATGAAAATCTATACTCCAAACCCGAATCCAATCTTCGTGGATTCCATCATCGTGTCTCT-CT---------CTCTCTCTC--TCTCTCTC-----------------------------------------------------TCTCTCTGTTTGTCTTTCTGGATCTCTTTCTTTCTTTTGGTATTTCATGCTGCTC---TCGC------TGGCCTTG-A--TCAAATGTT-CAGACATCTTCTTCAACA |
| droGri2 | scaffold_14906:340737-340980 + | CGGAACCGTATCCGGGTGAGTTTCGTAGGGTT-TAAAGCAACAAAACTTTGCTCGCCGACAC----GC-----GTACGCGAAAGCTCTACCCAAACTCAC--TATGGAAACC-----------------------------------------CGTATCCCA-AC---------CCCCCAAAT--AATCC-----AACCAATATCCCAATCCTGGCCTGTTCGTTCTCGTGTTCTTTGCTTTTCTC-----TTCTGCTCTTTCTTG-------------------------CCTGCTGCGATTGCTGCTT------GTTTTG-C--TAAAATGTT-TAGACATATTCTTCAATA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:13609973-13610070 + | AGCAATAAGTTAGACGTGAGTATG------GCTATACAAAT---------CATCT-------GGAACGT-------AAGTTCTAATG-----TATGTATTG---TATG-----TTGTATTTGCAGTTTTATGATAGCAAA |
| droSim1 | chr2L:13379253-13379350 + | AGCAATAAGTTAGACGTGAGTATG------GCTATACAAAT---------CATCT-------GGAACAT-------ACGTTCTAATG-----CATGTATTG---TATG-----TTGTATTTGCAGTTTTATGATAGCAAA |
| droSec1 | super_16:1746050-1746147 + | AGCAATAAGTTAGACGTGAGTATG------GCTATACAAAT---------CATCT-------GGAACAT-------ACGTTCTAATG-----CATGTATTG---TATG-----TTGTATTTGCAGTTTTATGATAGCAAA |
| droYak2 | chr2L:10029706-10029801 + | AGCAATAAGTTAGATGTGAGTATG------GCTATTTAAAT---------CAACC-GAAC--GT-ATGT-------ATGTTATATAG-----T-----TTG---CATT-----TTGTATTTGCAGTTTTATGATAGCAAA |
| droEre2 | scaffold_4929:11847836-11847927 - | AGCAATAAGTTAGACGTGAGTATG------GCTATCTAAAT---------CAGCC--------GAACGT-------GTATTCTAATG-----TTTG--------CACT-----TTGTATTTGCAGTTTTATGATAGCAAA |
| droAna3 | scaffold_12943:1669999-1670103 + | AGCGATAAGTTAGACGTGAGTATT-----GTCTCTGTCAAG---------TGTAT-------GGTACTAATATTTA----ACTAATT-----CTTGTATTAACTTGTT-----TTTAATTTCCAGTTTTATGATAGCAAT |
| dp4 | chr4_group1:1879331-1879430 - | AGCGATAAGTTAGACGTGAGTATA------TCTTTGCCATC---------TCTTT-----TTAAAACAA-------TCATTTTCATA-----TACATATAT---ATTT-----TTGTGTGTTTAGTTTTATGATAGCAAC |
| droPer1 | super_5:3326174-3326277 + | AGCGATAAGTTAGACGTGAGTATA------TCTTTGCCATC---------TCTTT-----TTAAAATAT----TTTATATTTTTATATATTACATATATTT------------TTTGGTGTTTAGTTTTATGATAGCAAC |
| droWil1 | scaffold_180772:852551-852648 - | AGCGATAAGTTAGATGTGAGTATA------T-TATATCTTTTGTCCCATT----------TTGGAATAT-------GTTTTTGAATA-----CCTT--------TTCT-----TTGGGATTTCAGTTTTATGATAGCAAC |
| droVir3 | scaffold_12723:5236355-5236448 - | AGTGATAAGTTAGACGTGAGTATT------ATCAACATATATGAATTATT----------T-TAAAATA-------ATAATC-------------GAAT-T---TAAT-----TTGTTATCCCAGTTTTATGATAGCAAC |
| droMoj3 | scaffold_6500:16444108-16444197 + | AGTGATAAGTTAGACGTGAGTATTACAGAGGCCCTATCAA------------------------AAT-A-------TC------ATT-----CGTGTATCT---AATATAATAT----TTTTCAGTTTTATGATAACAAC |
| droGri2 | scaffold_15126:8263493-8263587 - | AGTGATAAGTTAGACGTGAGTATTT-----ATTAAC--------------TTCATTCAAC--GTAATAT-------ACATACTAAAA-----TATGAA--------TACATCAT----TTTGCAGTCTTATGATAGCAAC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:12444473-12444619 + | GGC--AACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATT------------G-GGAAT-----------------AACCTTCAAAAGCTGCAACTT-AAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAA--CCTATTCGGACC |
| droSim1 | chr3R:9022585-9022731 - | GGC--AACCTGCCATTGTGCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATT------------G-GGAAT-----------------AACCTTCAAAAGCTGCAACTT-AAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAA--CCTATTCGGACC |
| droSec1 | super_12:1702814-1702963 - | GGC--ATCCTGCCATTGTGCATCTTCCGACCGGCGATCAGTAAGTGCACCATAGT-----A---A--ATGGAAT-----------------AACCTTCAAAATCTGCAACTT-AAATATTCCCAGTAATGTCCGCTTACAAGGAGCCCCTGGTTGGATGGGTGGACAA--CCTATTCGGACC |
| droYak2 | chr3R:11948210-11948356 - | GGC--GACCTGCCACTGTGCATCTTCCGCCCGGCGATCAGTAAGTGCACCAGATT------------G-GGATT-----------------AACCTTCAAAAGCTGCAGCTT-AACTATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGATGGCTGGGTGGACAA--CCTATTCGGACC |
| droEre2 | scaffold_4770:9192977-9193123 - | GGC--AACCTGCCCCTGTGCATCTTCCGCCCGGCGATCAGTAAGTGCAACAGATT------------G-GGAGT-----------------AACCGTCAAAAGCTACAACTT-CAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGCTGGATAGACAA--CCTATTCGGACC |
| droAna3 | scaffold_13340:7435217-7435360 - | GGC--AGCCTGCCAGTCAGCATTTATCGGCCTTCCATAAGTAAGTACTATATACG------------T-CCTGC-----------------TGTCTTATAAAATTGTTATTT----TTTTTCTAGTAATTGCCACATATAAGGAGCCATTAGTTGGATGGGTGGATAA--CCTTTATGGACC |
| dp4 | chr2:5294042-5294203 - | GGC--GACCTGCCCGTGTGCATTTTTCGGCCGGCCATTAGTAAGTTTTTCC----TTAGAT---G--AT-GCAAGGCCTTGGATGGAACTG-----AAACATTGTGTAACAT-GACTCTCCACAGTCGTGCCCACCTACCAGGAGCCCGTCGTTGGTTGGACTGACAA--TCTGTACGGGCC |
| droPer1 | super_19:1006170-1006331 - | GGC--GACCTGCCCGTGTGCATTTTTCGGCCGGCCATTAGTAAGTTTTTCC----TTAGAT---G--AT-GCAAGGCCTTGGATGGAACTG-----AAACATTGTGTAACAT-GACTCTCCACAGTCGTGCCCACCTACAAGGAGCCCGTCGTTGGTTGGACTGACAA--TCTGTACGGGCC |
| droWil1 | scaffold_181108:4575766-4575914 - | GGC--AATCTACCAATCTGTATTTTTCGCCCTGGTGTCAGTAAGTCCTCAAAATT------------C------------AACTTGTAACT-----ATAGCTGTTAAATTTTCTCCTTATTATAGTTATTGCCACCGCCAAGGAGCCAGTTTCGGGTTGGATTGACAA--TTTATATGGACC |
| droVir3 | scaffold_13047:18500357-18500519 - | ACAAAAAGCTGCCCATTATCGTCACAAGGCCTTCCATCGGTATGTAGGTCC----CGCT-A---A--CT-GGTTGGGCTTGACAAGTAACC-----ATATTTATTTTTTTTT-TTGTTCGCCCAGTGACGGCGGCCATACACGAGCCCATGCCCGGATGGATTGAGGG--CGTGAACGGACC |
| droMoj3 | scaffold_6496:22335084-22335230 - | GCC--GGTCTGCCGGCAGCCATAGTTAGGCCATCCATAGGTGAGTC----GAAGTATAAATCTAATTG-AG-AA-----------------GGCCCTAACTGACTGCTATT----------ACAGTATACGGTACACTGGAGCACCCCATGAAGGGCTGGGTGGGCAATGCCAACTCGGGTC |
| droGri2 | scaffold_15074:333824-333971 - | AGC--GGTTTGCCCATAAGCATCTTTCGCCCGGGTGTCAGTAAGTTCGTCGAATCATTAAGATCA----------------GTAAGAA---GATGTTCTCAGTCT-----------CCATTTCAGTTATTGGCAGCTACAAGGACCCCCTCCCGGGCTGGGTTGACAA--TCTATATGGTCC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:16678235-16678332 + | GATAAGCACGTCATCGTAAGCATTGCAAAATG--TAGTTGTTAAA-------TTCGC--------------TCTTCAATCATTA-ACAACATTT-----ACAATGTTTGCAGGCTGTCAACGTTGAT |
| droSim1 | chr2L:16366233-16366322 + | GATAAGCACGTCATCGTAAGCATTGCAAAATA--TAGTTGTTAAA-------TTCGC--------------TCTTCAATTATTT---------A-----CTATTGATTGCAGGCTGTCAACGTTGAT |
| droSec1 | super_7:325110-325199 + | GATAAGCATGTTATCGTAAGCATTGCAAAATA--TAGTTCTTAAA-------TTCGC--------------TCTTCAATTATTT---------A-----CTATTGATTGCAGGCTGTCAACGTTGAT |
| droYak2 | chr2R:4424626-4424717 - | GATAAGCACGTCATCGTAAGCTTTGCTATATATGTAGATGTGAAT-------TTCGA--------------GCTTCAATTCTTT---------T-----CTATTCTCTTCAGGCTGTCAATGTTAAT |
| droEre2 | scaffold_4845:19748460-19748547 + | GATAAGCACGTTATTGTAAGCTGCGCC--ATA--TAGTTCGTAAA-------TTCGA--------------GCTTCAATTATGT---------T-----CTATTCTCTCCAGGCTGTCAATGTTAAT |
| droAna3 | scaffold_12916:15881689-15881781 - | GAAAAGCAAGTGATTGTAAGA--TGTAAAC---------------TCTTAGACCCTCCTAACTGCTACAA---GCTAATACTTT---------T-----GCTTTGAATCCAGGCTGTTAACGTGAAC |
| dp4 | chr4_group3:8422191-8422279 + | CAAAAGCAGCTGATAGTGAGTACTGGAAGC---------------ATTTATAT---------CTCTGGAAAGCACTAATTCTTT---------T-----TTTAATCTTCTAGGCTGTCGAATTAAAT |
| droPer1 | super_1:9873274-9873362 + | CAAAAGCAGCTGATAGTGAGTACTGGAAGC---------------ATTTATAT---------CTCTGGAAAGCACTAATTCTTT---------T-----TTGAATCTTCTAGGCTGTCGAATTAAAT |
| droWil1 | scaffold_181132:892502-892596 - | GACAAAGAAGTGATTGTAGGTGTCAATGA---------------T-------TTCA----------AACTAACATCAATTTTTTATTAACGTCTTTATTTTTTCCTATTCAGGCTATCAATGTCAAT |
| droVir3 | Unknown | ------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | Unknown | ------------------------------------------------------------------------------------------------------------------------------- |
| droGri2 | Unknown | ------------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:16991543-16991639 - | AAGAACTTTCTGCAGGTAAGGA----------------ACACACATATACAATACCG-------TTTGA-------------ATTTCAAATAATCAGGA------TTTTGTGTGTGGACCTCAGATCATGTTCCAGGCC |
| droSim1 | chr3L:16333274-16333368 - | AAGAACTTTCTGCAGGTAAGGA----------------ACACACAT--ACAGTCCCT-------GTTGA-------------ATTTCAAATAATCAGGA------TTTTGTGTGTGGACCTCAGATCATGTTCCAGGCC |
| droSec1 | super_0:9052557-9052651 - | AAGAACTTTCTGCAGGTAAGGA----------------ACACACAT--ACAATCCCT-------GTTGA-------------ATATTAAATAATCAGGA------TTTTGTGTGTGGACCTCAGATCATGTTCCAGGCC |
| droYak2 | chr3L:17082640-17082734 + | AAGAACTTTCTACAGGTCAGGA----------------TCACACAT--ACATTCCCT-------GTAGA-------------ATTTAATTTAATCAGGA------ATTTATGTGTGAACTTTAGATCATGTTCCAGGCC |
| droEre2 | scaffold_4784:16851458-16851552 + | AAGAATTTTCTGCAGGTAAGGA----------------TCGCACAT--ACAATCCCT-------GTCGC-------------ATTTTATGTAATCAGGA------TTTTGCGTGTGAACTTTAGATCATGTTCCAGGCC |
| droAna3 | scaffold_13337:13625775-13625865 + | AAAAACTTTCTGCAGGTGAGCA----------------GTTCA----------------AGCTTAGCGAGGTCTGTTCCAGTT-TCCTAACATTC----------TTCCGCTC-----CTTTAGATCATGTTCCAGGCC |
| dp4 | chrXR_group8:4827167-4827262 - | AAGAACTTTTTGCAGGTAAGCC----ATCACC------------AGCA-------TTGAAAGCCATTGA-------------AATGCGTCTAAATAGCAGTCT--CTCTCCTC-----CCACAGATCATGTTCCAGGCC |
| droPer1 | gnl|ti|780630171:515-611 - | AAGAACTTTTTGCAGGTAAGCC----ATCACC------------AGCA-------TTGAAAGCCATTGA-------------AATGCGTCTAAATAGCAGTCT--CTCTCCTC-----CCACAGATCATGTTCCAGGCC |
| droWil1 | scaffold_180955:197087-197182 - | AAAAACTTTTTACAGGTAAGCC----------------ACAACGAT--GAATGGCTCGAGGGAGATTGA-------------ACTCTATGTAATC-------TCTTCACTTTC-----TTGCAGATAATGTTTCAGGCT |
| droVir3 | scaffold_13049:10166522-10166615 + | AAGAACTTTCTGCAGGTGCGTT----CCCCCTGGCTGATCACATAT--GTCGTTT---------------------------ATACTATATTTT-CGCC------TTTTGCTC-----CTGCAGATCATGTTCCAGGCC |
| droMoj3 | scaffold_6680:10629193-10629280 - | AAGAACTTTCTCCAGGTGAGTT----ACGG-------TTCAC------ATAATTC----------TCGT-------------ATTCCAAATAACGAAAT------CTTTGTCC-----TTGCAGATCATGTTCCAGGCC |
| droGri2 | scaffold_15110:9071735-9071831 - | AAGAACTTGCTGCAGGTGAGATTTTGATCG-------ATTAA------TTAAGTC----------TGG--------CTCTCTTTGCTAAATATGCC--A--CT--TTTTGTGT-----TGGCAGATCATGTTCCAGGCC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:8104192-8104292 + | GGTGGTAAAAGTGGAGTAAGTTTGGAGTG----CCTGGGCTAAGAACTTCCATT---------------------------------------------------------CTGAAACTTAACTCTTGCAATCAAACTTTC------------------------------------------------------------------TTTCAGAACCAAGCGTGGCAG |
| droSim1 | chr3L:7572156-7572239 + | GGTGGTAAAAGTGGAGTAAGTTTGGAGTC----CCTGGGCTAAGAACTTCCATT--------------------------------------------------------------------------CAATCAAACTTTC------------------------------------------------------------------TTTCAGAACCAAGCGTGGCAG |
| droSec1 | super_0:391632-391715 + | GGTGGTAAAAGTGGAGTAAGTTTGGAGTC----CCTGGGCTAAGAACTTCCATT--------------------------------------------------------------------------GAAGCAAACTTTC------------------------------------------------------------------TTTTAGAACCAAGCGTGGTAG |
| droYak2 | chr3L:8691884-8691979 + | CGTTGTAAAAGTGGAGTAAGTTTGCGA----------------------------------------------------------------CTTACGTTC-CTTTTATATACCG-ACATACCGTCTTACAACCAAACTTTC------------------------------------------------------------------TTTCAGAACTAAGCGCGGCAG |
| droEre2 | scaffold_4784:3260723-3260819 - | GGTGGTAAAAGTGGAGTAAGCTTGCAA----------------------------------------------------------------CTTGAGTTATATCTTTTATCCCG-CTATACTTACTTACAATCAAACTTTC------------------------------------------------------------------TCGCAGAACCAAGCGCGGCAG |
| droAna3 | scaffold_13337:13543116-13543232 - | AGTGGTTAAAGTGGAGTAAGTGGCGT----------------------TTAAGGG------AGTGATG----------G---ATAGATGGACCTGAGTCT-TTTTTAGT---TGTTCTCTTTCTCTAACATTCATAATCCG------------------------------------------------------------------TTTCAGAAACAAACGTGGCCG |
| dp4 | chrXR_group3a:1131777-1131868 + | GGTGGTCAAAGTAGAGTAAGTGATCC----------------------CCACCGA------ACTATTGTGACTTTACGC------T-------------C-TAATTGGG----------------------TACATTTTTT------------------------------------------------------------------GTGCAGAACCAAGCGTGGCCG |
| droPer1 | super_23:1158678-1158769 + | GGTGGTCAAAGTAGAGTAAGTGATCC----------------------CCACCGA------ACTATTGTGGCTTTACGC------T-------------C-TAATTGGG----------------------TACATTTTTT------------------------------------------------------------------GTGCAGAACCAAGCGTGGCCG |
| droWil1 | scaffold_180727:72451-72556 + | AGTGGTCAAAGTACAGTAAGTACATGG-----------AATGACCAATCCAATTAACTATA--TA-TGTACATATATGT------T-------------A-AATCCAAC----------------------CATCTCTTTT------------------------------------------------------------------ATCCAGAAATAGACGTGGCCG |
| droVir3 | scaffold_13049:9356761-9356852 - | GGTTGTCAAAGTTGAGTAAGTTTCTA----------------------TCAAC----AATAACTA-AGCTTGGTTATGG------TA------------A-TAATTTG------------------------ACACTTTTC------------------------------------------------------------------TGTTAGAAATAAGCGCGGTCG |
| droMoj3 | scaffold_6680:11400964-11401055 + | CGTTGTCAAGGTTGAGTAAGTTTGTAGGC----TCTTAACT-----------------------GGCGAAACCAGATGA------T-------------C-TAATTAC-----------------------ACAATTTTCC------------------------------------------------------------------CATTAGAAACAAACGTGGTCG |
| droGri2 | scaffold_15110:6804388-6804550 + | CGTTGTCAAAGTCGAGTGAGTAATTTGGCAAAAACTGGCTT-------TTAATG-------------------AGATTACTCC--T-------------C-TTATCAG-----------------------ACAGTTCTCCAAACTCCTCATTTATCTTAGAGCAAATATCAGATTTAAAAATAAAATTATTTTTTCTTCTTTTGATCTTCAGAAATAAGCGCGGTCG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:21169287-21169387 - | ACGTACATCACTAAGGTAAGTGACTATGCCG-----GGATTGTGGTTAT---TGAACTTAGCG----TCTCCACT--CACGGC-ATTT--CAT------------TCACTTGCAGTACATCACCGCCGAG |
| droSim1 | chrX:12918307-12918407 + | ACGTACATCACCAAGGTAAGTGACTATGCCG-----GGATTGTGGTTAT---TATACTTAGCG----TCTCCACT--CACGGC-ATTT--CAT------------TCACTTGCAGTACATCACCGCCGAG |
| droSec1 | super_8:3476294-3476394 - | ACGTACATCACCAAGGTAAGTGACTATGCCG-----GGATTGTGGTTAT---TATACTTAGAG----TCTCCACT--CACGGC-ATTT--CAT------------TCACTTGCAGTACATCACCGCCGAG |
| droYak2 | chrX:20345010-20345110 - | ACGTACATCACCAAGGTAAGTGACAATGCCG-----GGATTGTGGTTAT---TGAAAATACCT----TCTCCACT--CACGGC-ATTA--TAT------------TCACTTGCAGTACATCACCGCCGAG |
| droEre2 | scaffold_4690:17698644-17698744 - | ACGTACATCACCAAGGTAAGTGACAGTGCCG-----GGATTGTGGTTAT---TAAAAATACCT----TCTCCACT--CACGGC-ATTT--CAT------------TCACTTGCAGTACATCACCGCCGAG |
| droAna3 | scaffold_13334:1053972-1054064 + | TCTGGCTACCGATTGGTGAGTTATCG----A-----CATTATCGATTTCTATCGATTT----------------------------CTATCGAGTTAAAAAAATCCCCTTTCCAGATCTGTGTCAAACGC |
| dp4 | chrXL_group1a:9058690-9058790 + | ACGTACATCACAAAGGTAAGTGGCTATGCCGCGACGGGATTG------------AACCTCTCATCTCTCACCTCT--CACGGC-ATAT--CAA------------TCACTTGCAGTACATCACCGCCGAG |
| droPer1 | super_15:1452144-1452244 + | ACGTACATCACAAAGGTAAGTGGCTATGCCGCGACGGGATTG------------AACCTCTCATCTCTCACCTCT--CACGGC-ATAT--CAA------------TCACTTGCAGTACATCACCGCCGAG |
| droWil1 | Unknown | ACTTACATTACCAAGGTGAGT----------------------------------------------------------------TTT--GTT------------TTTCTTACAGTACATTACATCGGAG |
| droVir3 | Unknown | ACGTGCATTACCAAGGTAAGC-----------------------------------------------CTCTTCT--CACGAC-ATCCCTTAA------------TCCCTTGCAGTACGTTGCCAACGAA |
| droMoj3 | Unknown | ACATGCATAACCAGGGTAAGTGCTCA-GCTG-----CTtTTtTttTttT---tgttTTTTttT-------------------T-tTTT--CGT------------CGCCTTACAGTACATCTCCAAGGAG |
| droGri2 | scaffold_15203:11132616-11132716 + | ACCTACATTACTAAGGTATGT------TCGA-----TGATTTTGGTTTTTTTTGGCTTTACTT----TCACCGTTTACACGACAATTT--CAT------------CCTTTTGCAGTACGTGACCAGTGAG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:2065104-2065202 + | GGCGAACTTTTTAATGTGAGTGTCCTGTTT------------ACAGCTGGTATATTTT---------TCGAAA---AGCC----------CTCTAAAC---------TGG------------T---CACTTCCAC-TCTACAGATCTATAACTACATA |
| droSim1 | chrX:1441441-1441539 + | GGCGAACTGTTCAATGTGAGTTTCCTACTT------------ACAGCTGGTATATTTC---------TCGAAC---AGTC----------CTCTAAAC---------TGG------------T---CCCTTCCGC-TCCGCAGATCTACAACTACATA |
| droSec1 | super_10:1848730-1848828 + | GGCGAACTGTTCAATGTGAGTTTCCTACTT------------ACAGCTGGTATATTTC---------GCGAAC---AGTC----------CTCTAAAC---------TGG------------T---CCCTTCCGC-TCCGCAGATCTACAACTACATA |
| droYak2 | chrX:6259202-6259289 - | GGCGAACTCTTCAATGTGAGTTTCCTATGT------------TTCGCATGTACATAT---------------------------------ATCTAAAT---------TGG------------T---TCCTTCTCC-TCTGCAGATCTACAACTACATA |
| droEre2 | scaffold_4644:2028284-2028382 + | GGCGAACTGTTCAATGTGAGTATCCTGTGA------------TCCGCTTGTACTTATC---------TCGAGC---AGTT----------CTCTAAAC---------TGG------------T---CCCTGATCC-TCTGCAGATCTACAACTACATA |
| droAna3 | scaffold_13117:1070684-1070773 - | GGCGAGCTCTTCAACGTAAGTTTCCCCGCT------------TAAAC------------GCCTAAGA-----T----TTT----------CCCTAAAC---------CGT------------T---GCTGTTCTG-TCTCTAGATCTACAACTATATC |
| dp4 | chrXL_group1e:3790116-3790235 - | GGCGAGTTGTTCAACGTAAGTTCCAGCATT------------TCAGCCT---------CGAATTCGG-----C---AGTCACTTGATAC---------TCTCCCACCTCCCTCTCCCTCTGCCTCTCCATCATCCTCTTCCAGATCTACAACTACATC |
| droPer1 | super_17:723995-724114 - | GGCGAGTTGTTCAACGTAAGTTCCAGCATT------------TCAGCCT---------CGAATTCGG-----C---AGTCACTTAATAC---------TCTCCCACCTCCCTCTCCCTCTGCCTCTCCATCATCCTCTTCCAGATCTACAACTACATC |
| droWil1 | scaffold_181096:7421152-7421244 - | GGCGAGCTTTTCAACGTGAGTTACTCAGTC------------CA----A---------AGAAACTGG-----TTTTAGTTA--TGAT-----------TAACTC-----A------------C----TTTTTTTT-GTTATAGATTTACAACTATATA |
| droVir3 | scaffold_12928:7113520-7113613 + | GGCGAGTTGTTCAACGTAAGTCGATGACCTCGCG--------T------------------ATGTGGGCGTAC---TTTC----------A------CTGACGC---CTG------------C---CTCTTTGTC-TATTCAGATTTACAACTACATT |
| droMoj3 | scaffold_6328:2787435-2787524 + | GGGGAGTTGTTCAACGTAAATTCT--ATTC------------TCACTTAACACA----AGAATCAAA-----T----CTC---------------ATC---------TAA------------T---T-TTTCGCT-CGTTTAGATTTACAACTACATT |
| droGri2 | scaffold_14853:3491672-3491772 - | GGAGAGTTGTTTAATGTAAGCTAA--ACTTCGCCCATCCTCTCCAGCTG-----------------------------TT---TGGTTAACTTTCAAC---------TGT------------TTGTC-CTCCATC-TCCTCAGATTTACAACTACATT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:11622590-11622695 + | ATGGATGACGTCAAGGTGAGTG--------------GGTCGCACGGAGCGTCATT-------------------------TGGAAT-------------------TC------------CCATGGC-------TG------ACGAA-------------------ACGTTCACTCTGCTCTTCTCGATTACAGGACATCATCAGTAAA |
| droSim1 | chr3L:10995092-10995212 + | ATGGATGACGTCAAGGTGAGTG--------------AGGCGCACGGAGCGCCATT-------------------------TGGAAT-------------------TC------------CCCTGGC-------TG------AGAAAACGCTA--AGAACTTCATTACGCTCACTCTGTTATTCTCGATTACAGGACATCATCAGTAAA |
| droSec1 | super_0:3809862-3809984 + | ATGGATGACGTCAAGGTGAGTG--------------AGGCGCACGGAGCGTCATT-------------------------TGGAAT-------------------TC------------CCCTGGC-------TG------AGAAAACGCTA--AGAACTTCATTACGCTCACTCTGTTCTTCTCGATTACAGGACATCATCAGTAAA |
| droYak2 | chr3L:11651195-11651318 + | ATGGATGACGTCAAGGTGAGTG--------------CGGCGCACGAACCGCCATT-------------------------TGGAAT-------------------TC------------CCCTGGC-------TG------ACGAAACGCTAA-AGAACTTCATTACGCTCACTCTGCTCTTTTCAATTACAGGACATAATCAGTAAA |
| droEre2 | scaffold_4784:11607138-11607238 + | ATGGATGACGTCAAGGTGAGTG--------------AGGCGCACGGACCGCCATT-------------------------TCGAAT-------------------TC------------CCCTGTC-------TG------------------------------ACGCTCACTCTGCTCTTTTCAATTACAGGACATAATCAGTAAA |
| droAna3 | scaffold_13337:5894397-5894534 + | ATGGACGACGTCAAGGTGAGTAAGAAGTGGTGGAGGGGGTGT------------------TGCAG------CAAAGTGC-TGGAAC-------------------TT------------AATAAGC-------TA------ATGAAACGCTAA-AGAACTTCATTACCCTTTCTTTGCTCTTTTCAATTACAGGACATAATCAGTAAA |
| dp4 | chrXR_group6:10064193-10064317 - | ATGGACGACGTGAAGGTGAGTG--------------GGGCGC------------------TGCAC------GTGCCCGCTTGAGAC-------------------TT------------GCTTGGC-------AA------TATCAACGCTAA-AGAACTTCATTACGCTCATTATGCTCTTCTCCATTGCAGGACATAATCAGTAAA |
| droPer1 | super_61:344655-344779 - | ATGGACGACGTGAAGGTGAGTG--------------GGGCGC------------------TGCAC------GTGTCCGCTTGAGAC-------------------TT------------GCTTGGC-------AA------TATCAACGCTAA-AGAACTTCATTACGCTCATTATGCTCTTCTCCGTTGCAGGACATAATCAGTAAA |
| droWil1 | scaffold_180698:2114822-2114981 + | ATGGACGACGTAAAGGTGAGTG--------------TAACA--------------------GCACTAGTGTGTGTACGCCTGTGC-GTGTGTGTGTGTGTGTGTGCGTATATTT-----TCATGTA-------ATTATCCAACG-ACCGCTAATAGAATTTCCTTACACTTACTTTGCTCTTCTCACTTGCAGGACATAATCAGTAAA |
| droVir3 | scaffold_13049:23825799-23825928 + | ATGAATGATGTCAAGGTGAGTG--------------CGCGGCGCGGCGGCTGCTT-----------------------CTTAATAA-------------------TT--------GATG-------AATTGACAA------TCTTATCGTTAA-AGAATTTCCTTACTCTCTGTCTGCTCTTATCTCTTACAGGACATAATCAGTAAA |
| droMoj3 | scaffold_6680:18448682-18448807 + | ATGAACGACGTGAAGGTGAGTG--------------AGCGGAATG-----C---------TGAAC----------------------------------------TGAATTTATTGATG-------AATTGACAA------TCTTATCGTTAA-AGAATTTCATTACACTCTCCTTGCTCTTCTCTCTTGCAGGACATAATCAGTAAA |
| droGri2 | scaffold_15110:13832957-13833097 - | ATGAGCGATGTAAAGGTGAGTT--------------CGGA-------GCGTTATTCTAGTTGATT------GTGTTTAATTTTTAT-------------------AT------------ATTTGGCAATTGTTAA------TCAATTCGTTAA-AGAATTTCCT--CACTCACTCTGCTCTTATCTCTTCCAGGACATAATCAGTAAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:13653883-13653980 - | GAATCCAAGCTGAACGTGAGTTT-A--TCTAAATATG-CCCATTTATCAATAG-TCATAC----------TTATTTA-----T-------GC-TCCTTTA--ACTCCTTGCAGAGCTTCGAAAAAGAC |
| droSim1 | chr2R:12393703-12393800 - | GAGTCCAAGCTGAACGTGGGTTT-A--TCTAGATACG-CCCATTTATCATTGG-TCATAC----------TTATTTA-----T-------GT-TCCTTTA--ACTCCTTGCAGAGCTTCGAAAAAGAC |
| droSec1 | super_1:11152590-11152687 - | GAGTCCAAGCTGAACGTGGGTTT-A--TCTATTTACG-CCCATTTATCATTGG-TCATAC----------TTATTTA-----T-------GT-TCCTTTA--ACGCCTTGCAGAGCTTCGAAAAAGAC |
| droYak2 | chr2R:15527673-15527770 + | GAATCCAAGCTGAACGTGGGTTC-A--TCTAGATACT-TCCATATATCAAAAG-CCGTAC----------TTATTTA-----T-------GT-TATTTAA--ACTGCTTGCAGAGCTTCGAAAAAGAC |
| droEre2 | scaffold_4845:7883019-7883116 - | GAATCCAAGCTGAACGTGGGTTT-T--TCTAGATACG-CCCATTTATCAATGG-CCCTAC----------TTATTTA-----T-------GC-ATTTTAA--ACTCCTTGCAGAGCTTCGAAAAAGAC |
| droAna3 | scaffold_13266:10531972-10532067 + | GAATCCAAGCTGAACGTTAGTTACT--TGTGCA-A---CTCGT------------CCAATCGGTTC-AATAACTAGA-----T-------CC-TCCTTTACATCTCCTTGTAGGGCTTCGAGAAGGAC |
| dp4 | chr3:16466931-16467019 - | GAATCCAAGCTGAACGTAAGTGC-TTAGCAA---ATG-TTCACTGAACCTTGAAT----------------CATTGCCTTTG------------------TTCTCGGTTCCAGAGCTTCGAAAAGGAC |
| droPer1 | super_4:295271-295359 + | GAATCCAAGCTGAACGTAAGTGC-TTAGCAA---ATG-TTCACTGAACCTTGAAT----------------CATTGCCTTTG------------------TTCTCGGTTCCAGAGCTTCGAAAAGGAC |
| droWil1 | scaffold_181141:4609865-4609965 + | GAATCAAAATTGAATGTAAGCTG---------A-AAA------------TTTAATTT---ATATTTTGTTTTCTCCTATTTACATACCACGTGTCCTTCA--CTCAATTACAGAGCTTCGAAAAGGAT |
| droVir3 | scaffold_12875:16919908-16919994 - | GAATCCAAACTAAATGTGAGTAT-C--TCCTAA-TCGCCTCAT------------CCAAT----------TCATTTT-----T-------GA-CCCTTTG--CCTACTTTTAGAACTTTGAAAAAGAC |
| droMoj3 | scaffold_6496:11084070-11084155 + | GAATCTAAACTAAATGTAGGTAT-A--GTAA---TAG-ATGAGTTTTTCTTTTAT----------------TTTAACC-----------------TTTGG--CCCGCTTGCAGAACTTTGAGAAGGAC |
| droGri2 | scaffold_15245:16459236-16459327 - | GAATCCAAACTAAATGTGAGATACC--TCTAAA-ACAAATCAT------------AA---AGATTTTGATGTATTGAGATTA------------------TGTACATTTGCAGAACTTTGAGAAAGAC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:11018004-11018094 - | TTATTGCTGCAGGAGGTGAGTGATTAT----G-GTTTA----AGT-------AATACGAATTACATAAACTATATTTA-------ACCACTATTCTTAGATACAAAACACTGCT |
| droSim1 | chr3R:10448012-10448102 + | TTACTGCTGCAGGAGGTGAGTGTTTAT----G-GTTTA----AAT-------TATACGATTTACATAAACTATATTTA-------ACCACTACTCTTAGATCCAAAACACCGCT |
| droSec1 | super_0:10933739-10933828 + | TTACTGCTGCAGGAGGTGAGGTTTTAT----G-GT-TA----AGT-------TATACGATTTGCATAAACTATATTTA-------ACCACTACTCTTAGATCCAAAACACCGCT |
| droYak2 | chr3R:15416636-15416724 + | TTACTGCTTCAGGAGGTAAGTTTTT------G-GTTCA----GGT-------TTCATGAATTACATAAACTATATTTA-------ACCACATTCCTTAGATCCAAAATACCGCT |
| droEre2 | scaffold_4770:10539530-10539618 - | TTACTGCTTCAGGAGGTCAGTTTTT------G-GTTCG----ATT-------TCAACGATTTACATAAACTGTATTTA-------ACCATATTTCGTAGATCCAAAACACCGCT |
| droAna3 | scaffold_13340:6107797-6107878 - | TTGTTGCTGCAGGAGGTGGGTAGTG---------------AA---C------TTTTCAAATTACTATACC--------TTCATGAATGTTCTTTTGTAGATTCAAAATACTGCG |
| dp4 | chr2:21002920-21003004 - | CTGTTGCTGCAGGAGGTAGGCTACA------GAG------AA---C----ATTTAG---------TAAATAATAGTCGCTCATTC-TTTTCCCTAATAGATCCAAAACACTGCC |
| droPer1 | super_3:3754054-3754138 - | CTGTTGCTGCAGGAGGTAGGCTACA------GAG------AA---C----TTTAAG---------TAAATAATAGTCGCTCATTC-TCTTCCCTAATAGATCCAAAACACTGCC |
| droWil1 | scaffold_181130:7245340-7245433 + | TTGCTATTGCAAGAGGTCAGTTAGAAT----A-GCAAA----AGACACTCTTGGGATGGTTAATAATA----------TTCATAT-TTGGTTTTTGCAGATTCAAAATACTGCC |
| droVir3 | scaffold_13047:7744104-7744193 - | CTGCTGCTTCAAGAGGTGAGCAACTGCTTTTG-GCTTA----TGT----------TCGATTTTCAATGAT--------CTCTCG-AATACTTTTTATAGATACAAAACACAGCG |
| droMoj3 | scaffold_6540:3682572-3682661 - | TTGCTGCTGCAAGAGGTAAAATGTT------GAGCTCATAAAAGT----------TTCCTTT---TCAATTACA----TTCACAT-TCATTCGTTTTAGATACAAAATACGGCC |
| droGri2 | scaffold_14830:3558248-3558343 - | CTGCTGCTGCAGGAGGTGAGTTGCACCAACTG-ACACA----G-----TGTTTCCATAATTTACATTTTCTCTTTAT--------ATCTTTGTTCTCAGATACAAAACACGGCT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:26332536-26332624 + | TTCAAGA--------TGAACTTG-GTAGGATTT--------TA-AGCA-TTAAGCATGTAT-ATAGTT-------------------TTTGCTGTGCTCATAAAGTTCTATAGGTTCTCGAT------------------------ACTTGG |
| droSim1 | chr3R:25978440-25978522 + | TCCAAGA--------TAACCTAG-GTAGGATTT--------TA-AGCA-TTA-G-----CT-ATAGTT-------------------TTTGCTGTGACCATAAAGTTCTACAGGCCTTCGAT------------------------TTTTAG |
| droSec1 | super_4:5152157-5152239 + | TCCAAGA--------TAACCTAG-GTAGGATTT--------TA-AGCA-TTA-G-----CT-ATAGTT-------------------TTTGCTGTGACCATAAAGTTCTACAGGCCTTCGAT------------------------TTTTGG |
| droYak2 | chr3R:27249454-27249531 + | TCCATGA--------TGAACTAG-GTAGGACTA--------TG-AGCA-T------------ATTGGA-------------------TGTACCATACTCATAAGGTTCCACAGGTACTAGGT------------------------ATTTGG |
| droEre2 | scaffold_4820:1676549-1676626 - | TCCTCGA--------TGAACTAG-GTAGGATAA--------TG-AGTA-CAA------------GGCA-------------------TTGGCCGTTCTTATAGAGCTACACAGGTACTCGAT------------------------TTTTGG |
| droAna3 | scaffold_12911:4648843-4648934 + | CTAAAGTTTT-----GGGACTTA-TTAGGATAA--------AACGGCG-TGA-G-----TAAAAGAGT-------------------TTAAACCAACTAAGAAAACT-CATTATTATTTAAA-------------------CATGTAGTCGA |
| dp4 | chr3:12022571-12022657 + | AACCTTT--------TGAACATGAGTAAGGAAT--------CG-GGAT-CGA-C-----GT-GTAGATCCATCCGTCCACTGACAACGT----------------CTTTGCAGACAAGAAGG------------------------AGCTCG |
| droPer1 | super_20:1381640-1381720 + | TACGCGG--------TGAGTGTT-GAAGGGAAG--------CA-AGCT-TTGAG-----CC-AAAGAT-------------------CT--GCAGGTTTTCAT---TTGACAGGCCTTGGTT---------------------T-GTCGGAT |
| droWil1 | scaffold_181130:9833040-9833125 - | TCCAACAC-------TGAATCAG-GTGGG-TAA--------TA-AGAAATTG-G-----C---------------------------------CTACAGGCTAA---------ATACTGAAATTCTGGAGAAAGATCCAAATCACGAAACGG |
| droVir3 | scaffold_13049:21775409-21775494 + | TTTGCCAGAGCGCGTCTATTGCAAGGTAGGTGG--------TG-GAAC-GCA-T-----CT-ATT-------------------------GATATGCCCGTACCTGATCAACTGTTGGCTAG------------------------GTATGC |
| droMoj3 | scaffold_6540:13565415-13565500 - | TGTAAGAAT------TAAGTTCA-AAACGATCGACTAACGCTT-AAAC-GCA-T-----AT-ACA----------TATATAAATATATTCCCTGTGTATACAA----------------TGT------------------------GCCTTG |
| droGri2 | Unknown | -------------------------------------------------------------------------------------------------------------------------------------------------------- |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:3598907-3598996 + | GGCCATTAGGACAGGGTAGGTTGAA-----ATCGGATACAA---CTAAAAG-----TT-ATTTTTAATTGT-------------------AT--------CCG-GTCTT-C-ATTTTAGGTCTTCGATTGTTCC |
| droSim1 | chr2R:2322894-2322983 + | GGCCATTAGAACAGGGTAGGTAGAA-----ATCGGATTAAA---CTAAAAC-----TT-ATTTTTGATTGT-------------------CT--------CTT-GTTTT-C-ATTTGAGGTCTTCGATTGTGCC |
| droSec1 | super_1:1254446-1254535 + | GGCCATTAGAACAGGGTAGGTAGAA-----ATCGGATTAAA---CTAAAAC-----TT-ATTTTTGATTGT-------------------CT--------CTT-GTCTT-C-ATTTGAGGTCTTCGATTGTGCC |
| droYak2 | chr2L:16271881-16271969 + | GGCCATTAGGACAGGGTAGGTAGAT------TCGGGTTTAA---CTAAAAG-----TA-AGATTTAATAGT-------------------TT--------TCT-TTCCA-C-ACTTTAGGTCTTCAATTGTGCC |
| droEre2 | scaffold_4929:19008519-19008607 - | GGCCATTAGAACAGGGTAGGTAGGT------TCGGATATAA---CTAAAAG-----TA-AGATTTAATAGT-------------------TT--------TCT-TGCAT-C-ACTTTAGGTCTTCGATTGTGCC |
| droAna3 | scaffold_13266:10106458-10106549 + | GGCTATTCGAACGGGGTGAGTGAAAATTATTATGGA---AA---TTGATGG-----CA-------GAATCT-------------------CTCTAAAAAACT---CTTT-T-ATTGCAGTTCCTCAATTGTACC |
| dp4 | chr3:6515146-6515237 - | GGCCATAAGAACAGGGTGAGTGTAT-----AATGGAAGTAG---CACATTG--T--TT-AAATACGAAAGT-------------------AA--------CCTTGTTCC-T-GATGCAGTTCATCGATTGTGCC |
| droPer1 | super_2:6735406-6735497 - | GGCCATAAGAACAGGGTGAGTGTAT-----AAAGAAAGTAG---CATATTG--T--TT-AAATACGACAGT-------------------AA--------CCTTGTTCC-T-GATGCAGTTCATCGATTGTGCC |
| droWil1 | scaffold_180700:1009012-1009118 + | GGCTATACGTACGGGGTAAGTGAGG--------GGGTATGAAAAATAAGTTTATAG------AATGGCAGTTAATATTTGTTTT-----TCTTTT---TTCT---TTT--TATGTATAGTTCCTCTATAGTCCC |
| droVir3 | scaffold_12875:823172-823263 + | GGCCATACGCACGGGGTGAGTACGGCTG---ACTGCGATAA---CTGCACG-----CACATTCACGGCATT-------------------CA--------CTC--TCC--CATGAGCAGTTCGTCGATTGTGCC |
| droMoj3 | scaffold_6496:3846141-3846250 + | GGCCGTGCGAACAGGGTGAGTAGAC-----AGGAGA-AAAA---CTAACTGTATAACGCTTCCATTACATT-------CAACTATCCTCTCT--------CTTTGTCTCTTGTGAACAGTTCTGCTATTGTTCC |
| droGri2 | scaffold_15245:10130930-10131015 - | GGCCATACGCACGGGGTAAGTGTATCTGATACTGGGCATCG--------AA-----TA-AAATCTGACACT-------------------AA--------T-----CCA-T-GGCTCAGTTCGTCCATTGTGCC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:4817801-4817896 - | GGGTGAAACAGGCAGGTTTGTATGGAAT---TCCATGAGCTT--------------------------CAAAGTAATGCTTCTAACTCTGTGGTTTTTC-ATA-----TTTCCCAGTGGCAAGAGCACCCA |
| droSim1 | chr2L:4687585-4687681 - | GGGTGAAACAGGCAGGTTTGTATGGAAT---TCCAGAAGCTC--------------------------CAAAGTAATCTTTCTAACTCTGCGGGTTTTCTATC-----TTTCCCAGTGGCAAGAGCACCCA |
| droSec1 | super_5:2913658-2913754 - | GGGTGAAACAGGCAGGTTTGTATGGAAT---TCCAGGTGTTC--------------------------CAAAGTAATCTTTCTAGCTCTGTGGTTTTTTCATA-----TTTCCCAGTGGCAAGAGCACCCA |
| droYak2 | chr2L:4827662-4827759 - | GGGTGAAACAGGCAGGTTTGTTTGGAAC---TCCACAAGAT-------------------------TTCAAGGTATTCCTTCTAACTCTGTGGTTTTTCCACA-----TTTTCCAGTGGGAAAAGCACCCA |
| droEre2 | scaffold_4929:4898740-4898837 - | GGGTGAAACAGGCAGGTGTGTATGCAAT---TCCAAAAGGT-------------------------CTCAATGTATTCCTTCTAACTCTGTGGTTTTTCTATA-----TTTCCCAGTGGCAAGAGCACCCA |
| droAna3 | scaffold_12916:9386286-9386375 - | GGGCGAGACCGGCAGGTGAGAATACAAT---TCTACAACCCA--------------------------TACCCTTGTTTTCA------TATCATTTTTT-CAA-----TTTTTCAGTGGCAAGAGCACCCA |
| dp4 | chr4_group3:3567830-3567920 - | GGGCGAAACAGGAAGGTGAGTGAGAAGCAAAT----------------ATGTATGCCCCAAGAAATCCTAACGA----------------TC--------ATATTTTCCCCTTCAGCGGCAAGAGCACACA |
| droPer1 | super_1:5048029-5048119 - | GGGCGAAACAGGAAGGTGAGTGAGAAGCAAAT----------------ATGTATGCCCCAAGAAATCCTAACGA----------------TC--------ATATTTTCCCCTTCAGCGGCAAGAGCACACA |
| droWil1 | scaffold_180772:7924021-7924113 + | CGGAGAGACGGGCAGGTAATT----AAA---ACCATAAGGTTACCTTAATGTATATTTAAAGTATTTAT-----------------------G---TACGATA-----TTTTGCAGTGGAAAGAGCACTCA |
| droVir3 | scaffold_13246:521378-521407 + | GGGCGAGACGGGC-----------------------------------------------------------------------------------------------------AGCGGGAAGAGCACGCA |
| droMoj3 | scaffold_6500:7585086-7585115 - | GGGCGAGACGGGG-----------------------------------------------------------------------------------------------------TCTGGCAAAACGACGCA |
| droGri2 | scaffold_15252:16729554-16729583 - | GGGTGAAACTGGC-----------------------------------------------------------------------------------------------------AGTGGGAAGAGCACACA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:11661994-11662091 - | TGCGGATTCTGTCAGGTGAGGA---GGA-GCAAAGTGGCGCCACAA---------------------T-----------TTACTAGAAACTAATTGCA-----------TCTTTTTGTC------CCCCCGCGTAGGAAGCCTGTCCCGTG |
| droSim1 | chr3R:9814135-9814231 + | TGCGGATTCTGTCAGGTGAGGA---GGA-GCGCAGTGGCGCCACTA---------------------T-----------TTACTAGAAACTAATTGGA-----------TATTCTTGTC------CACCC-CGCAGGAAGCCTGTCCCGTG |
| droSec1 | super_0:10292637-10292733 + | TGCGGATTCTGTCAGGTGAGGA---GGA-GCGCAGTGGCGCCACTA---------------------T-----------TTACTAGATACTAATTGGA-----------TATTCTTGTC------CACCC-CGCAGGAAGCCTGTCCCGTG |
| droYak2 | chr3R:14775389-14775483 + | TGCGGATTCTGTCAGGTGAGGA---GGA-GCACACTCTTGCCACTG---------------------T-----------TTACGGGAAAATAATTGCA-----------TTTCCTTA--------CCCCC-TTCAGGAAGCCTGTCCCGTG |
| droEre2 | scaffold_4770:11186817-11186911 - | TGCGGATTCTGTCAGGTGAGGA---GAA-GCACAGTGGTGCCACTG---------------------T-----------GAAATGGAATCTTATAGCA-----------AATCCTT-T-------CCGCC-TTCAGGAAGCCTGTCCCGTG |
| droAna3 | scaffold_13340:16266860-16266959 - | TGCGGTTTCTGTCAGGTGAGGA---ACC-TTTCA---------------ATTTAAATTTATAAGAAGC-----------AAGTTC---------TAAA-----------TATTCTTGTATCATCAATTTA-CACAGGAGGCTTGCCCAGTT |
| dp4 | chr2:20340730-20340823 - | TGTGGCTTCTGTCAGGTAAGGAATGGGAGTCGAAATTTTTACATAA---------------------T-----------TTCAAGTCGATTCATTGAC-----------TT------T-------TTGCT-CGTAGGAGGCCTGCCCTGTG |
| droPer1 | super_3:3092221-3092314 - | TGTGGCTTCTGTCAGGTAAGGAATGGGAGTCGAAATTTTTACATCA---------------------T-----------TTCAAGTCGATTCATTGAC-----------TT------T-------TTGCT-CGCAGGAGGCCTGCCCTGTG |
| droWil1 | scaffold_181130:15806459-15806551 + | TGCGGATTCTGTCAGGTGAGTG---TGA-CTGAAATTCCAATTCAG---------------------C-----------ATATTTGAACTATATTA-------------T--------ATTTTCTGCCCC-TGCAGGAAGCTTGTCCCGTG |
| droVir3 | scaffold_12855:5731320-5731404 + | TGCGGTTTTTGTCAGGTAATTA---T------------------TA---------------------C-----------CCATAAGTATCCCATATAAAACTCATGGTGT------GTT------TCCTT-TGCAGGAGGCCTGTCCAGTC |
| droMoj3 | scaffold_6540:6055055-6055141 + | TGCGGTTTTTGTCAGGTAATT-----------------------TATCCATATGGATA-----------------TAATTTTGAGTGGGGT----T------CA-----TGATT--CTT------CCATT-AATAGGAGGCTTGCCCAGTC |
| droGri2 | scaffold_14906:8272376-8272477 - | TGCGGTTTTTGTCAGGTAATCT-----------------------ATTATTCTATATGTCCAGCAAGAAATTTAACAATTTTAATTATGTT----C-------------C--------ACATTTAAATGT-TGCAGGAGGCCTGTCCCGTC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:4829965-4830054 - | CATTCGCAGCTTTAAGTGAGTAGTC---G--------------------TATGTTTATTA---------------------AGATT-TACT----TTCTATA--AATTAATGTCCA-----------------------CTACTTTTAGTCTCTATGACGATGA |
| droSim1 | chr2L:4699797-4699886 - | CATTCGCAGCTTTAAGTGAGTAATC---G--------------------TATGTTTATTA---------------------AGATT-CACT----TTCTATA--AACTAATTTGCA-----------------------CTACTTGTAGTCTCTATGACGACGA |
| droSec1 | super_5:2925673-2925762 - | CATTCGCAGCTTTAAGTGAGTAATC---G--------------------TATGTTTATTA---------------------AGATT-CACT----TTCTATA--AACTAATTTGCA-----------------------CTACTTGTAGTCTCTATGACGACGA |
| droYak2 | chr2L:4839794-4839887 - | CATTCGCAGCTTTAAGTGAGTAAAA---C--------------------TATGTCTATTA----------GGTG-------AAATT-AACT----TTCTATA--AATTACTTTTCT-----------------------TTATTTTTAGTCTATATGACGACGA |
| droEre2 | scaffold_4929:4910720-4910828 - | CATTCGCAGTTTTAAGTGAGTAAAA---T--------------------TAGGTTTAATTTGGTTTATTAGGAGAATTTTAAAAT--TAC-----TTTTTTA--AATTGCTTTTCA-----------------------TTATTTGCAGTCTCTATGACGACGA |
| droAna3 | scaffold_12916:9399289-9399374 - | CATTCGAAGCTTCAAGTATGTTAAGA---------AATCCACGATT-----------------------------------TTT--T-TATATTTTCATACA--AAAT-----TC------------------------ATTTTTTCAGCTTGTACGACGACGA |
| dp4 | chr4_group3:3587822-3587933 - | CATACGCACATTTAAGTGAGTAGGAA---------AAATCGTTGTTTAAGCTGTTTACTG---------------------CGATTGTA--------------------CTTTACTGTATTTACTGTATTTGGTA--CATGCCTTGCAGCCTCTATGATTCCGA |
| droPer1 | super_1:5067398-5067508 - | CATACGCACATTTAAGTGAGTAGGA----------AAATCGCTGTTTAAGCTGTTTACTG---------------------CGATTGTA--------------------CTTTACTGTATTTACTGTATTTGGTA--CATGCCTTGCAGCCTCTATGATTCCGA |
| droWil1 | scaffold_180772:1562219-1562313 - | CATTAAAACGTTTAAGTGAGTAGTAAATCTTGGTTAAC----------------CCAATA---------------------CGATTT-CATTGGCGTTTATA--AATT-----CC------------------------TCCACCTTAGCCTTTACGACGACGA |
| droVir3 | scaffold_12963:8507047-8507138 + | CATACGCACATTCAAGTATGTCA---------------------------------ACTA---------------------TGAT----------------A--AAATGCTTTGCAGTACTCTTTAAATATTGTATTCTCATTCGATAGCCTCTATGACGACGA |
| droMoj3 | scaffold_6500:1118880-1118971 + | CATACGTACATTCAAGTAAGCCCAA---T-TCGCC-------GACG-----------------------------------TTA--T-GGTATTCATATACAAATGCTAATCATTT-----------------------ATCCCTTTAGCCTCTATGACGACGA |
| droGri2 | scaffold_15252:11699277-11699378 + | CATACGCACCTTCAAGTATGTGCAA---T-GGGTAAACCATATGTGAGAGATTTAAACCT---------------------TAATTTTA--------------------CTTTCCTATATCT-----------------GCCCAAACAGTCTGTACGATGACGA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:8347269-8347356 - | TGTTCAACTACTTGAGTGAGTTCGATT---GGAA-------------------------------AAT---------TTAAATTTAA----TGT---TTAATTAACCAATTCGAATTGCTTAGATTGCTATATTGGCT |
| droSim1 | chr3L:7807265-7807357 - | TATTCAACTATTTGAGTGAGTTCGATT---GAAA---------------------AT--TTGGAAAAT---------TTAA-------ATATGT---TTAATTAACCAATTCAATTTGCATAGATTGCTACATTGGCT |
| droSec1 | super_0:643746-643838 - | TATTCAACTATTTGAGTGAGTTCAATT---GGAT---------------------AT--TTAGAAAAT---------TTAA-------ATATGT---TTAATTAACGAATTCAATTTGCATAGATTGCTACATTGGCT |
| droYak2 | chr3L:3551197-3551288 + | TATTCAACTACTTGAGTGAGTTCGATT---GGAC---------------------AT--TCGGAATAT---------TTCA-------ATATGT---ATAATCT-CCAATTCCAATGGTTTAGATTGCTACATTGGCT |
| droEre2 | scaffold_4784:5683607-5683696 + | TATTCAACTATTTGAGTGAGTTCGATT---GAA----------------------GT--TCGGAATAT---------ATTA-------ATA-GT---TTAATTGT-CAATTCCAATGGCTTAGATTGCTACATTGGCT |
| droAna3 | scaffold_13337:7445991-7446073 + | TGTTCAACTATTTGAGTGAGTATCTTC---CTA------------------AGAAGGAAGT-------GTC--AT--T---TATTTA----TGAT---------------A-TTACTGCATAGATTGCTACATCGGCT |
| dp4 | chrXR_group6:12821045-12821128 - | TTTTCAACTATTTGAGTGAGTACCACG---AGAGAT-----------------------CC-------CTC--CTTCTGATTGTTAA----TGTT---------------TTTTGTGCCGCAGATTGCTATATCGGCT |
| droPer1 | super_33:845496-845579 - | TTTTCAACTATTTGAGTGAGTACCACG---AGAGAA-----------------------CC-------CTC--CTTCTGATTGTTAA----TGTT---------------TTTTGTGCCGCAGATTGCTATATCGGCT |
| droWil1 | scaffold_181009:3090042-3090138 + | TCTTCAATTATTTGAGTGAGCGAGGCTACGA-AT--------ATTCTCTAGAGGAAT--TTGGAATG----------------CTAAGATTCGT---TT-----------TTCTTTTCCGTAGATTGCTACATTGGCT |
| droVir3 | scaffold_13049:4752940-4753026 - | TCTTCAACTACTTGAGTGAGTGAGGCTT--AGAGG------------------------CTG-------TCGACTACTTTC-GCTTA----TGCCTG-------------AATCTCTCTGCAGATTGCTATATCGGCT |
| droMoj3 | scaffold_6680:3143577-3143662 - | TCTTCAATTATTTGAGTGGGTAGAGTG---AAGTAT-----------------------TT-------CTT--ATACTCCAGCCTAA----TGTTGG-------------TCTCTCCTTATAGATTGCTATATTGGCT |
| droGri2 | scaffold_15110:10166029-10166124 + | TCTTCAACTATTTGAGTGAGTACTTTG---AGT-TTGTCTTAATCCCCTGGATAGGTGAG--------------TGCTGAGTGGTGA----TC--------------------TCTTTCACAGATTGCTATATCGGTT |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:2737553-2737676 + | AGACGAGCCCACAACGTGAGTGA-GAGCGAGT------TCCAAT-----------------------GTGGTCC----------------------TCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATT--CCG---------------------------------ACCTTGAATCA-CCCACAGCGGATTGGACAGCTC |
| droSim1 | chr2L:2697912-2698035 + | AGACGAGCCCACAACGTGAGTGA-GAGCGAGT------TTCATT-----------------------GTGGTCC----------------------TCGAAACCAGTTGCGCTCCGATCAGATTCCAAAATTGACACATT--CCG---------------------------------ACCTTGAATCA-CCCACAGCGGCTTGGACAGCTC |
| droSec1 | super_5:903635-903758 + | AGACGAGCCCACAACGTGAGTGA-GAGCGAGT------TCCATT-----------------------GTGGTCC----------------------TCGAAACCAGTTGCGCTCCGATCAGATTCCAAAATTGACACATT--CCG---------------------------------ACCTTGAATCA-CCCACAGCGGCTTGGACAGCTC |
| droYak2 | chr2L:2732711-2732833 + | AGACGAGCCCACAACGTGAGTGA-GA----------GGTCCATT-----G-----------T-----GTGATCC----------------------CCAAAACCAGTTCTACTCAGATCTGATTCC-AAATTGACACATTCTCTG---------------------------------ACCTTGAATCA-CCCACAGCGGATTGGATAGCTC |
| droEre2 | scaffold_4929:2790150-2790269 + | AGACGAGCCCACAACGTGAGTGA-GA----------GGTCCATT-----------------------GTGGTCC----------------------TTGAAACCAGTTCCGCTCGGTTCATGATGCCAGATTGACACATT--CCG---------------------------------ACCTTTAATCA-CCCACAGCGGATTGGACAGCTC |
| droAna3 | scaffold_12916:13439490-13439581 + | GGACGAGCCAACAACGTAAGT--------------------------------------------------TCT----------------------CTGAAACCATTC----------CAATTTTCAAACTTATCAAGTT--G-----------------------------------TTAATGTCTTT-CACACAGGGGCTTGGATAGTTC |
| dp4 | chr4_group4:2073904-2074060 + | AGACGAGCCCACAACGTAAGTATCGAACGAGTGAGAGGACCA-GACCAG--AGGCAGCATCTGCGATGCGGTCGAAAAGAGAAGAGAAACCAGAGAGCTAAACCAGTTGCTGACT-----------------GACATTCC--ACA---------------------------------ACCTTGAACCATCCCACAGAGGCCTGGATAGTTC |
| droPer1 | super_10:1078988-1079144 + | AGACGAGCCCACAACGTAAGTATCGAACGAGTGAGAGGACCA-GACCAG--AGGCAGCATCTGCGATGCGGTCGAAAAGAGAAGAGAAACCAGAGAGCTAAACCAGTTGCTGACT-----------------GACATTCC--ACA---------------------------------ACCTTGAACCATCCCACAGAGGCCTGGATAGTTC |
| droWil1 | scaffold_180772:1508923-1509021 + | AGACGAGCCCACAACGTAAGTAA-TAACAAA------------------------------------------------------------------AAAGACCGGTTATTTCCT-----------------G---------TTAGCCTTGAACTTAACCAACATCTC-------------------AA-CCAACAGAGGCCTGGACAGCTC |
| droVir3 | scaffold_12963:11356884-11356997 + | AGACGAGCCCACAACGTAAGCAA-GAATAGAG------A------ATGCAATCAAT-----------G----------------------------CGGAAACCAGTTGCTGACT-----------------AACATGTG--CTTACCTTGAAATTG-----T---------------------AACCA-TTCGCAGGGGCCTGGATAGTTC |
| droMoj3 | scaffold_6308:1548466-1548588 - | CGACGAGCCCACGTCGGGCCTGG-------A-----C-TCCTTTACCGC--CCACAGC---------------------------------------GTC---------------GTCCAGGTGCTGAAGAAGCTA----------TCGCAAAAGGG-----CAAGACCGTCATACTGACCATACATCA-GCCATCG----TCGGAGCTCTT |
| droGri2 | scaffold_15252:5474360-5474483 + | GGACGAGCCCACAACGTAAGTGA-AA----------CA-CCGAAACACCA-----------C-----ACAATC------------------------GAGAACCAGTTACTGACT----AA------GCATTATTATTTT--TTAACCTTGAAATTG-----CATCGC------------------ATC-CATACAGGGGCCTGGACAGTTC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:29757-29904 + | GAAAATGCCACCCAGGTGAG-------AAAAAGTA----------GTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTA------AGC-------------------------------------------------------------------------------------------------------------------------------------AT---ATC----------------------ACGC--------AAGGAC------AAACATTAAGTTAAGGCCTAGTTCCTATTATACTAGGAATACTCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTACTTATG--------CC---------------------------------TC----T-TATTCTTC-TTTT--CTCAGACCTCCGCCAAAGAA |
| droSim1 | chrX:14351-14498 + | GAAAATGCCACCCAGGTGAG-------AAAAAGTA----------GAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTA------AGC-------------------------------------------------------------------------------------------------------------------------------------AT---ATC----------------------GCGC--------AAGGAC------AAGTATTAAGTAAAGTTATAGTTCCTATTATACTAGGAATACTGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTACTTATG--------CC---------------------------------TC----T-TATTCTTT-TTTT--CCCAGACCTCCGCCAAAGAA |
| droSec1 | super_108:19641-19788 + | GAAAATGCCACCCAGGTGAG-------AAAAAGTA----------GAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTA------AGC-------------------------------------------------------------------------------------------------------------------------------------AT---ATC----------------------ACGC--------AAGGAC------AAGTATTAAGTAAAGTTATAGTTCCTATTATACTAGGAATACTGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCCTTATG--------CC---------------------------------TC----T-TATTCTTT-TTTT--CCCAGACCTCCGCCAAAGAA |
| droYak2 | chrX:20604-20735 + | GAAAATGCCACCCAGGTGAG-------AGAACTAA----------GTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATA------AAA-------------------------------------------------------------------------------------------------------------------------------------AT---ATC----------------------CTGC--------CAAGTTA-AA----------AGTGAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATAATTGCATAG----------------------------------------------------------------------------------------------TTTTCCTACTAATG--------TC---------------------------------CC----TTTCTTCTTC-TTTT--CCCAGACCTCCGCCGAAGAA |
| droEre2 | scaffold_4644:14892-15014 + | GAAAATGCCGCCCAGGTGAG-------AAAATTTA----------GTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATA------AGC-------------------------------------------------------------------------------------------------------------------------------------ATCTTATC----------------------CTGC--------AAAGAA---A----------AGTTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATA-------AG----------------------------------------------------------------------------------------------TTTCCCTACTAATG--------CC---------------------------------CC----T-TTTTCTTC-TTTT--CCCAGACCTCCGCCAAAGAA |
| droAna3 | scaffold_12929:1781922-1782010 - | AGAAATGCCACCCAGGTGAGTCTGTCTAGAGTTTG----------ATGGGATTGGAGTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----------ATT-------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-G----GA----TTGT-GATT--TTCAGACCTCCGCCAAAGAA |
| dp4 | chrXL_group1a:594378-594471 + | GAAAATGCCACCCAGGTGAGT-------GTCCGAG----------GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTTC--------------------------------------------------------------AATGGACTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGACCAATA--------TC-------------------GTC-----------TT----T-GA-TCCTT-TCCC--GGCAGACCTCCTCCAAAGAA |
| droPer1 | super_157:12433-12452 + | GAAAAAGCCACCCAGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | scaffold_181150:2495748-2495847 + | GAAAATGCCACCAAGGTGAGT-------GAGATAA----------GTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--TTCCTTTTTTTCTC-----ACAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTAATTA-----------C---------------------------------CG----TTTCCACTTCTTATT--TTCAGGCCACCGCCTAAGGC |
| droVir3 | scaffold_12928:440188-440807 + | GAAAATGCCACCCAGGTAAATGCGCGTATGTT--GATTAACCAGACTTGCAATGGAATCAGGGAAAGGGGTCGTCTATCAGTGAGGCGAAATTAACAGAGCTA---------------------GGAAAATTTTGGAAGTTGCATAAATT-------------------------------------------------------------------------------CAAAAAGAATCCAAAGTGGAGAAGGATATTCACCTGAAGAGCCAGAAATTGTTGGGTTATTTAAACACTTGGGTTAAAATGGAGTTAA---------GAACAA--------------------------------------------------------------------GCGAAAAATATCAATTGGAAAATGGGCTTAAGACAATGCGCGACTACGAAATACCCTGGACAAAGCGC-GACTACGAAATACCCTG--------------------------------------------------------------GACAAAGCGCTGAGCTGTCCTTAAAAACATTCTAGCTTCCTTCTGTAAT------------ACACACACACACACACACACACATACATGCAGATTCTGTGCTTCAGTCACATAAATC------------------------------------------------------------------------------------------------------------------------------------------------------------ATGATAA----CATCGTAATACCCTCTACAAAGGGTATACGAATGATGTAATCTAGGATTGAAGCAAACCA---------TCTGAAAGG---TCTTTGGGCTTGACAAACAAATAGTTGGGCGAAACAGA-GAACAGTTTAGCTCCGCT------------------------------GTCGAGTTGTG--------ATTCCTGAGTGTTTTTTCTCT---TATTAATAGA-TC----AAT--TTGCT-TGCT--TGCAGACCGCCGCCAAAGAA |
| droMoj3 | scaffold_6328:1398030-1398785 + | GAAAATGCCACCCAGGTGAGT-------ATG-----------------GGATTAGCATTAGGGAAGGAATTTAAATTTGAATAGGAAAAAATTTGTAGACTCTATATA----------------------------------------CCCTATAGTAAATATTCTTAAGGGTCTAAACCAAACTCTTGTCGAATTCAATTTTTGATTTTCTTGTCTTTAATTTCTTGACTAAAATTACCCCAAGTCTATTAGTATCTGGAGTTTTAGGACTTGCATCTTGTATGTTAA-------------TAAAAATCGGACTAA---------AAATATCTTGAATGTCTGTCTCTTAACTTGGTCAAATCTAATCTGACTAAATCGTTAGATTATTTCCGTGTATTGGAACATACAACTATTGTATAATACGTCTATAAATACCCTTTACTTCGTTACATCAAGATGAAAGCTGATTTTAAGAAATAATTTGATTGATTCCACATTAAAA----------ATT---------------------------------------GCCGAGTTGTGACTCCAAACTAAATTG-----TT--------------------------------------------------------------------------------AGATAAGGTAGATAGATAAATGGA-----------------------------------------AAGGCCTATAGGTCTATCGTAAAT--GCCCCACCCATGCTGATCAGAA------------------ATGTGTATTTGTATAAACAATATGATAAATGTTTTCATAATATAA--TTCGAGTGCTAGACAAATGATAAGTCAAAGGAA--GGGCAAATGATA-------AGTGAAAGGAAACCTTGGGGCTTTACTAAT-----------CGATATAGTTGACTGGTTTAGTTCAGCTATGGAGTATATAGTAGTATAGTTACTG----CTGGCCACACACTATGGC---------------------GTC-----------TCACTCA-CA-TCCCA-TCCCATTGCAGACCGCCGCCAAAGAA |
| droGri2 | scaffold_15203:6868729-6869248 + | GAAAATGCCACCCAGGTGAGT-------GGC-------------------ATTGTAGTTG-----------------------------------------CGACACAGTTGCCAGTAGCGCTAACTTATTTT-----------------------------------------------------TATTC-------------GACT-------------------------------------------TCTTTGTCCGCTTGAAGAGTAAC-----------------------------TCTAACAAATTTAAAAACCCATTTATCAA--------------------------------------------------------------------ACGCGACGCGACGAATCAGAAACAGGCTTCAATTTATGCAGAGCTCTGCAGCATCTCTTC----------------------TAGA--------AGAGAA---GAGATACAGAGAGAAAAGGCGTGGT-----------------------------------CGATCTTTAAAAGAGGTTCCCTTCCTTCAATCTCTCAAATTGTAGCAGATATGCAGTTTTATTGATTTACACTTTCAGA--------------AATATCGCTTTTGGCGATTAGGGCGGTGGGTGTGTGGGCGTTGCCGTTGCCAGTTACCGTTTATATACCTTGCAACTCAAAAGCTTTTATGGGCGGCGGAGATGGGCATCGCTGATGCCGATCTTTGAAAGACATCGCGAAATATTTGTGTTCAT------------------------------------------------------------------------------TTAACAACTGCATTA----------------------------------------------------------------------------------------------TTTTTG----------------T-----------------------TTTTTTTTGAT-T----TG----TTGT-TATC--TGCAGACCGCCGCCAAAGAA |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:9130478-9130566 - | AAGTACTCAAGATAAG--TGGGT-GTTCTTG--GAAATTCGCC-TCGATCGGTAGCTAAA---------------------------------TTTCTGATTACTCCTAAAAGCCT-TTTGGATTGAGC |
| droSim1 | chrX:7292594-7292672 - | A---------GATAAG--TGGGT-GTTCTTG--GAAATTCGCC-TCGATCGGTA-CTAAA---------------------------------TTTCTGATTACTCCTAAAAGCCT-TTTGGATTGAGC |
| droSec1 | super_68:18213-18301 - | AAGTACTCAAGATAAG--TGGGT-GTTCTTG--GAAATTCGCC-TCGATCGGTAGCTAAA---------------------------------TTTCTGATTACTCCTAAAAGCCT-TTTGGATTGAGC |
| droYak2 | chrX:17726636-17726725 - | AAGTTCTCAAGATAAG--TGGGT-GTTCTTG--GAAATTCGCCTTCGATCGGTTGCTAAA---------------------------------TTTCTGATTACCCCTAAAAGCCT-TTTGGATTGAGC |
| droEre2 | scaffold_4690:5984818-5984906 + | AAGTTCTCAAGATAAG--TGGGT-GTTCTTG--GAAATTCGCC-TCGTTCGGTAGCTAAA---------------------------------TTTCTAATTACTCCCAAAAGCCT-TTTGGATTGAGC |
| droAna3 | scaffold_13047:993021-993104 - | AAAACCTGAGAATAAG--TGGGTAGTTCCGAGCGAAAGACTCC-TCCATCTTAA---------------------------------------CATCCATTT--CCCGTTCAGCCT-TTTGGATTGAGC |
| dp4 | chrXL_group1e:1170761-1170857 + | AGCTGCTCAAGATAAG--TGGGT----TCCG--CAGATACGTTTTTCCTCTGCAG-----------------------ACTCGAGAGTCTCTTTTTTTGGCTTTCGCCCACAGCCT-TTTGGATAGAGC |
| droPer1 | super_30:24276-24372 - | AGCTGCTCAAGATAAG--TGGGT----TCCG--CAGATTCGTGTTTCCCCTACAG-----------------------ACTCGTGAGTCTCTTTTTTTGGCTTTCGCCCACAGCCT-TTTGGATAGAGC |
| droWil1 | scaffold_181096:7487008-7487059 + | TTGATTACTACAT--------------------------------------------TGATTTCAACTTTCA---------------------T-----------TTGATAAGCCT-TTTGGATTGAGC |
| droVir3 | scaffold_13052:1731753-1731829 + | AAAATTTAAATAAATA--TATGT-GTAATTT--GAATACTGCC-TCGATGGTTAGCTACG---------------------------------TTTTTTA------------TTCT-TATGTACCTCTT |
| droMoj3 | scaffold_6498:2397368-2397459 + | TAATATTTGAAATTAGGCTTATT-GTTATTAA-TAAAGCCTCA-TTTTTCTGCA-CTTGG---------------------------------CTTTAAATTATTTTTCAAAATTTGGAGATATTGAGC |
| droGri2 | scaffold_15203:7061820-7061918 + | AAGAGCTTAAGATAAG--TATGT-GTTCCGT--GTGATAAAAG--GAATCTTCAG----A------------CAGCGAACT-GA---TCGCC-TTACTGAATCCG-CTTGCAGTCT-TTTGGATTGAGC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:14093563-14093669 + | GAGAGCCCCAGCAGAGTGAGTA-------GCGA---------------------------------------------------------------------------------TGGGG-GTCAGATGG-----------------------------------------------------------CCGTGGAA----GATATGTGACGATTGCC--------------------------------------------------------------------------------------------------CCCTTAC----------T---------------------ACTATCGTC---TGCTCAACAGGAAAGCAAACTACAT |
| droSim1 | chrX_random:3764305-3764407 + | GAGAGCCCC---AGAGTGAGTA-------GCGA---------------------------------------------------------------------------------TGGGG-GTCAGATG-------------------------------------------------------GATGGCCGTGGAT----GATATGTGACGATTGCC----------------------------------------------------------------------------------------------------CTTAC----------T------------------------ACGCTC---TGCCCAACAGGAAAGCAAGCTACAT |
| droSec1 | super_20:697977-698075 + | GAGAGCCCC---AGAGTGAGTA-------GCGA---------------------------------------------------------------------------------TGGGG-GTCAGATGG-----------------------------------------------------------CCGTGGAT----GATATGTGACGATTGCC----------------------------------------------------------------------------------------------------CTTAC----------T------------------------ACGCTC---TGCCCAACAGGAAAGCAAGCTACAT |
| droYak2 | chrX:8347469-8347564 + | GAGAGCCCC---AGAGTAAGTA-------GCCA---------------------------------------------------------------------------------GGGGG-ATCAGGAGG-----------------------------------------------------------CCGCGGAA----GGTATGTGATGATTCCC-----------------------------------------------------------------------------------------------------------------------------------------ATTACCCTC---CGATCCACAGGAAAGCAACCTACAT |
| droEre2 | scaffold_4690:12836867-12836962 - | GAGAGCCCC---AGAGTGAGTA-------CGCA---------------------------------------------------------------------------------GTCGG-GTCAGAAGG-----------------------------------------------------------CCGCGGAA----GATATGTGATGATTCCC-----------------------------------------------------------------------------------------------------------------------------------------ATTCCCCTC---CGATCAACAGGAAAGCAACCTACAC |
| droAna3 | scaffold_13047:1616598-1616749 + | GATACCCCG---AGAGTGAGTTAAATA-----GGTAGACTGGGTTTTACGGGTTTTGGGGATTAGGGTTAAGGGGTTTAAGGATCAGGGACTTGGCTA----------------GAAGG-ACCAA------------------------------------------------------------------AGGA-CTTA-----------------AGAA------------------------------------------------------------------------------------------------CTAAC----------A---------------------AAAATTCAC---CATTCCACAGGCAAGCACGGTACAC |
| dp4 | chrXL_group1e:6144259-6144391 - | GAAAACTCC---AGAGTGAGTTGAGTGAGGTT-----------------------------------------------------------------------------------GAGAGCCGGGGTG-------------------------------------------------------------CTCGGAA----GA----------CCATCCTC-------------------------------------------------------------------------ACTGATCCTATTCTAATCTT-------CCCCTCTTTCGTCTATATCTCTC--------------TCTCTC---TCGTCCGCAGGCAAGCGAACTATAC |
| droPer1 | super_21:1109353-1109492 - | GAAAACTCC---AGAGTGAGTG-------GTTG-----------------------------------------------------------------------------------AGAGCCGGGGTGC-----------------------------------------------------------TCGCAA------GA----------CCTTCCTC-------------------------------------------------------------------------ACTGATCCTATTCTAATCTT-------CCCCTCTTTCGTCTATATCTCTCTCTCTCTCTCTCTCTCGCTC---TCGTCCGCAGGCAAGCGAACTATAC |
| droWil1 | scaffold_180702:2428501-2428590 + | GAGAACACA---AGGGTGAGTG-------GGAG---------------------------------------------------------------------------------GAGAG-ATGAGAGGA-----------------------------------------------------------GAATGGA------------------------------------------------------------------------------------------------------------------------CTTTAAC-CGCCATTATT------------------------T--CTT---TCTTCCACAGGGAAGTGAACTACAA |
| droVir3 | scaffold_12970:1543996-1544230 - | GAAAACACA---CGAGTAAGTG-------GACAACTATC---------------------------ACTATACCCC-----------------------------------------------AG-TAACCCTGGAGACACCTTCGACCC-ATGCTAACTTGCTGATTTTCGAGGGCTATGTTTGTAG-----CC-ATAT-----------------GCTATGTTACGGCAGTTTTAAGCTAGGTTCAGG------GTA-TCCTCCCAGCCGGGCCCTCTCGACCAGCGCAATCCTGCTCTAATAAATTTC------TTCAA----------C------------------------ATTTTCTATCCAACAGCAGTCAAGCGAAATACAG |
| droMoj3 | scaffold_6359:2739408-2739517 - | GAAAACACA---AGAGTGAGTG-------ACAA---------------------------------------------------------------------------------GATTT-ATATATATT-----------------------------------------------------------TATAGGA-ATAT-----------------AATA------------------------------------------------------------------------------------------CTAATTCTTAT-CTACGTTATT------CCC------------GTCTCACTC---AATCAATTAGTCGAGCCGAATACAT |
| droGri2 | scaffold_15081:1312788-1313066 - | GAAAACAGA---GGAGTAAGTACGATC-----AGCTCGC---------------------------ATTATACCCCGTAAGAGAAGGTTCCCTAATGAAATGGACAAACAGAAATAGAA-ATCAATTT-----GAAAATCGGTGCAAGGTAAAATTAACTTGAT---CTCTCCAGCATAAATATATAT-----AT-ATAC-----------------GCTG------GACAG-ATTAAGTTCATTTTAGATGGTCGATAACACTTTCAACA--CCTTTTTAAATCAATTTCAAACTGCTTTTATTCAATTATT-------AACGTTTATCGTT------------------------T--TAT---CTGTCAACAGTCGAGCGAAATACAG |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:4134138-4134222 - | TCGCACATGTCTAAGGTGAG------CAC----GATGGCCACATTTA-----TTGGGCAA----------CCAATGAA-------TT--CCCGCCTGCC---CACAGGTTCACTCG--GTCTGC |
| droSim1 | chr3R:17124439-17124521 + | TCGCACATGTCCAAGGTGAG------CAC----GATGGCCACATTTA-----TTGGGCAA----------CCCATGAA-------TC--C--TCCTGCC---CACAGGTTCACTCG--GTCTGC |
| droSec1 | super_0:17695137-17695219 + | TCGCACATGTCCAAGGTGAG------CAC----GATGGCCACATTTA-----TTGGGCAA----------CCCATGAA-------TC--C--TCCTGCC---CACAGGTTCACTCG--GTCTGC |
| droYak2 | chr3R:8209596-8209678 - | GCGCACATGTCCAAGGTGAG------CAC----GGCGGCCCCA------AA--------ATCAAAGTTCTCTGACCAA-------A-----ATCCCGCC---CACAGGTTCACTCC--GTCTGC |
| droEre2 | scaffold_4770:17439359-17439448 + | GCGCACATGTCCAAGGTGAG------CAC----GATGGCCCCG------AC--------ATCGAAATT--C---TAAATCCCCAATCCAAAATCCCGCC---CACAGGTTCACTCA--GTCTGC |
| droAna3 | scaffold_13340:13231716-13231803 - | GCCCATCTGAACAAGGTAAT------TTG-AAT--TTGTGTTTT-TG-GCC-AGGAGCAA----------TTGATGTA-------TT--TGTTTATGTT---CGAAGGTACACTCT--GTTTGC |
| dp4 | chr2:14657774-14657858 - | GCCCACACGTCCAAGGTAAG------AA-----GCTAGTCGAA------AA--------ATTGAGGCATTTTCACGAA-------AC--A---ATTGTCTGAGGCAGGTTCACTCC--GTCTGC |
| droPer1 | super_0:5758126-5758210 + | GCCCACACGTCCAAGGTAAG------AA-----GCTGGTCGAA------AA--------ATTGAGGCATTTTCACGAA-------AC--A---AATGTCTGAGGCAGGTTCACTCC--GTCTGC |
| droWil1 | scaffold_181089:2794443-2794538 + | GCACATATGTCCAAGGTAAT------CAA-ATT--TAATGTAATTTA-----CCAGACAAGCGTTCCCTTTTTACAAA-------TT--TTCTTTCCCT---GGCAGGTTCACTCG--GTTTGC |
| droVir3 | scaffold_12822:435887-435972 + | CCACACATGTCAAAGGTGGG------TATAAAA--CCATTTAGT-CT-GTC-----------GGTGGCATTTAATTGG-------TT-----TTCTTTT---CGTAGGTGCATTCG--GTGTGC |
| droMoj3 | scaffold_6540:27855886-27855971 - | CAGCAA-TAGCAACAGCAAC------AGC----AATAGCAACAGCAACAGC----AGCAA----------CACCTGCAA------GC--CGCGGCAGCC---CAAAGTCTCGTTCG--CACCGC |
| droGri2 | scaffold_15245:11304334-11304423 - | ATGCACAGCTCCTTAAGCAATATGAACAG----CAGAGCCTGG------GTAGTGATGTA----------CC--TGGAT------CC--C-GGCCCATC---TACACGTTCAGTGGACATCAGC |
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:11833377-11833466 + | TGGACATACTAAATGGTGAGTCTC-----T--------------------AGGGGATTAGCAAGCTATAATT---------------------------------TCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG |
| droSim1 | chr2R:10571957-10572046 + | TGGACATACTAAATGGTGAGTCTC-----T--------------------AGGGGATTAGCAAGCTATAATT---------------------------------CCTCAATTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG |
| droSec1 | super_1:9333409-9333498 + | TGGACATACTAAATGGTGAGTCTT-----T--------------------AGGGGATTAGCAAGCCATAATT---------------------------------CCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG |
| droYak2 | chr2R:17148711-17148800 - | TGGACATACTGAATGGTGAGTCTC-----T--------------------AGGGGATTAGCAAGCCATGATT---------------------------------CCTCCCTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG |
| droEre2 | scaffold_4845:14024563-14024652 - | TGGACATACTAAATGGTGAGTCTC-----T--------------------AGGGGATTAGCAAGCCATATTT---------------------------------CCACACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGAG |
| droAna3 | scaffold_13266:11891001-11891093 - | TGGACATACTGAATGGTGAGTTTACAAGTCG-------------------------GCACTAAT--------TTTTGAAGCGGGAATGTGAATATGA----------------------GCCGTAAATTGCAGAAGCGGTGCTGGGCG |
| dp4 | chr3:18992460-18992549 - | TGGACATCTTAAATGGTGAGTCTTCCATTCCAGTTCCTTTGCGTTTTGTC----------------------------------------------------------CACTGATTCACTCAAACTTATACAGAGGCCGTTTTGGGTG |
| droPer1 | super_242:24174-24263 - | TGGACATCTTAAATGGTGAGTCTTCCATTCCAGTTCCTTTGCGTTTTGTC----------------------------------------------------------CACTGATTCACTCAAACTTATACAGAGGCCGTTTTGGGTG |
| droWil1 | scaffold_181150:1332685-1332769 - | TGGACATAATAGCGGGTGAGTGAA---------------------------AGAGAT-ACGAGATTACAATT---------------------------------TG-GATTACATTTT-TGGTTGGTCGCAGAAACGTCAATGGGTA |
| droVir3 | scaffold_12875:17265801-17265883 + | TCGATGTGCTGAATGGTGAGCTTT--GCCTG-------------------AGTGGGTC--------------CACACC-----------AAATCCTAATC-----C--------------CATTTATTTGCAGAGGCTGTGCTGGGCG |
| droMoj3 | scaffold_6496:10745157-10745258 - | TCGATGTGCTAAATGGTAAGTCCC--ACTTC--------------------AGGCACTTCTAATCT-----------------------GAATATTAATACTCTTTCTTTCTCTCTCTC-TCCTGTCTTGCAGAGGCTGTACTTGGCG |
| droGri2 | scaffold_15245:16779329-16779419 + | TCGATGTTTTAAATGGTGCGTGCTTAACTTG-------------------------AAAGAGAT--------CTCACAAAT------------------------CCAATCTTAATTAAGTGATTCATTGCAGAGGCTGTTCTGGGTG |