Canonical miRNAs

Mirtrons

Canonical miRNAs

dme-bantam intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:642193-642303 + TTTGT---------------------------A-ACTCCAATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTCATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC
droSim1 chr3L:290535-290645 + TTTGT---------------------------A-ACTCCAATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTCATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC
droSec1 super_2:662642-662752 + TTTGT---------------------------A-ACTCCAATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTCATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC
droYak2 chr3L:629639-629749 + TTTGT---------------------------A-ACTCCAATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTCATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC
droEre2 scaffold_4784:648329-648439 + TTTGT---------------------------A-ACTCCAATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTCATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC
droAna3 scaffold_13337:6520579-6520690 - TTTGT---------------------------AAACTCCAATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTTATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC
dp4 chrXR_group8:4603895-4604015 - TTTGGGAC-------T-----ACTCCACCAAT---A---TATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTTATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC
droPer1 super_29:844606-844726 - TTTGGGAC-------T-----ACTCCACCAAT---A---TATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTTATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC
droWil1 scaffold_180698:10172097-10172254 + TTTTTTTCATACATTTT-------------------TTTGATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTCATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACAGAAAAAAAAAGAAGAAAAAAAAATAACGATCATCATCTTGCC
droVir3 scaffold_13049:5805300-5805416 + TTTGTGTG-------T-----CGTCT------A-TCTC---TGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTAT-TTCATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC
droMoj3 scaffold_6680:4143306-4143408 + CT--------------------------------------ATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTTTTTTATACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATAACCACA--------------------------------------TTCC
droGri2 scaffold_15110:13265206-13265333 - TGTGCGTC-------TCTCTGTCTCCATCACT---A-CCTATGATTTGACTACGAAACCGGTTTTCGATTTGGTTTGACTGTTT-TTCAGACAAGTGAGATCATTTTGAAAGCTGATTTTGTCAATGAATA-CCACA--------------------------------------TTCC

dme-let-7 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:18472019-18472126 + A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTA-CACATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTACAAGCCGCATTT
droSim1 chr2L:18160930-18161037 + A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTA-CACATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTACAAGCCGCATTT
droSec1 super_7:2097967-2098074 + A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTA-CACATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTACAAGCCGCATTT
droYak2 chr2R:4988819-4988926 + A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTA-CACATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTACAAGCCGCATTT
droEre2 scaffold_4845:5799401-5799508 - A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTA-CACATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTACAAGCCGCATTT
droAna3 scaffold_12916:2379166-2379273 + A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGCAACTA-AGAATCGTACTATACAATGTGCTAGCTTTCTTTGCTTGACAATAAGCCGCATTT
dp4 chr4_group3:3635640-3635746 + A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTACTT--CAGATCGTACTATACAATGTGCTAGCTTTCTTTGCTTGACTATAAGCCTCATTT
droPer1 super_1:5116219-5116325 + A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTACTT--CAGATCGTACTATACAATGTGCTAGCTTTCTTTGCTTGACTATAAGCCTCATTT
droWil1 scaffold_180708:11623134-11623240 + AAAGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTATTCAATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTATAAGCCACA---
droVir3 scaffold_12963:18451337-18451441 + A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTATTTA-TAGAGCATACTATACAGCGTGCTAGCTTTCTTTGCTTGACAATAAGCCGCA---
droMoj3 scaffold_6500:6184568-6184672 - A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTACTTA-TAGACCATACTATACAGCGTGCTAGCTTTCTTTGCTTGACTATAAGCCGCA---
droGri2 scaffold_3792:132-239 + A-AGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTATCTA-TCTAGCATACTATACAGCTTGCTAGCTTTCTTTGCTTGACTATAAGCAGCATAG

dme-mir-1 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:20487426-20487546 + AAAGACC-----------------ATCCCAT--ATTCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATA-TTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCG----------------------------------G----AGTTGAAA
droSim1 chr2L:20052694-20052814 + AAAGACC-----------------ATCCCAT--CTTCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATA-CTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCG----------------------------------G----AGTTGAAA
droSec1 super_18:365651-365771 + AAGGACC-----------------ATCCCAT--CTTCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATA-CTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCG----------------------------------G----AGTTGAAA
droYak2 chr2R:6842709-6842830 + AAAGAAC-----------------ATCCCAC--CATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATA-CTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGTCATCG----------------------------------G----AGTTGAAA
droEre2 scaffold_4845:3954268-3954372 - AAGGACC---------------------------TCCAGCCT-GTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATA-CTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCG----------------------------------G------------
droAna3 scaffold_12916:6985813-6985928 + AAATATC-------------------------AAGAGAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAAT-ATCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACTTCA----------------------------------A----GTTTAAAT
dp4 chr4_group3:7845311-7845422 - GGAAA--------------------------TCAGAAGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAAC-ATAAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACAGCG-----------------------------------------TCTACA
droPer1 super_1:9292009-9292126 - AAAGACGG-A-------------A-------TCAGAAGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAAC-ATAAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACATCG----------------------------------C------CTACAG
droWil1 scaffold_180708:1845911-1846049 + ATAGATGGTAGATATATATGTAG--------CTACTTGGCCTCTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATTAAATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGTCCGACATCA----------------------------------TCTACAATATAAT
droVir3 scaffold_12963:13613413-13613527 - TGTGC--------------------------TTACTTGGCCT-TTGAGAGTTCCATGCTTCCTTACATTCAATAGTATTCA-AATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAACATCA----------------------------------C----AAAAACAA
droMoj3 scaffold_6500:24555167-24555325 + TGGGTCTT-AAA--------TTGT-------TCATTGCGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATTTA-TATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAGCATCATACCAAACTGTAAAAAAAAACACATTATGAAATTG----TGTTTAAA
droGri2 scaffold_15126:6250403-6250508 + ATTGT--------------------------TTACTTGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATA-AATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAACATC------------------------------------------------

dme-mir-10 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:2635213-2635319 - C------CTC-----ATCAGTTTGCTCCACGTCTACCCTGTAGATCCGAATTTGTTTTATACTAGCT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATATCCATCGA----------
droSim1 chr3R:2666345-2666451 - C------CTC-----ATCAGTTTGCTCCACGTCTACCCTGTAGATCCGAATTTGTTTTATACTAGCT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATATCCATCGA----------
droSec1 super_6:2726434-2726540 - C------CTC-----ATCAGTTTGCTCCACGTCTACCCTGTAGATCCGAATTTGTTTTATACTAGCT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATATCCATCGA----------
droYak2 chr3R:7777990-7778096 + C------CTC-----ATCACTTTGCTCCACGTCTACCCTGTAGATCCGAATTTGTTTTATACTAGTT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATATCCATCGG----------
droEre2 scaffold_4770:2882555-2882661 - C------CTC-----ATCAGTTTGCTCTACGTCTACCCTGTAGATCCGAATTTGTTTTATACTAGCT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATATCCATCGG----------
droAna3 scaffold_13340:5417353-5417464 + C------CTA-----TCCAGTTTGCTCCACGTCTACCCTGTAGATCCGAATTTGTTTTATACTAGTT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATTTCCATCGTAAA-----AT
dp4 chr2:19739488-19739592 + T------CTC-----A--AGTTTGCTCCACGTCTACCCTGTAGATCCGAATTTGTTTTACATTAGCT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATGTACAACGA----------
droPer1 super_3:2487675-2487785 + TTTGGTTCTC-----A--AGTTTGCTCCACGTCTACCCTGTAGATCCGAATTTGTTTTACATTAGCT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATGTACAACGA----------
droWil1 scaffold_181089:12007310-12007419 - --------------------TTTGTTCTACGTCTACCCTGTAGATCCGAATTTGTTTTATACTAGTTTTTAAGGACAAATTCGGTTCTAGAGAGGTTTAAGTGGTTCAATGTTCTACAAACAAACCAAA
droVir3 scaffold_13047:6092057-6092155 + --------------------TTTGTTCCACGTCCACCCTGTAGATCCGAATTTGTTGTACACTAGTT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTCTGTGGCTCATTGTCCAGCGA----------
droMoj3 scaffold_6540:16502892-16503003 + T------GTCTAAGTTCCACTCTGTTCCACGTCTACCCTGTAGATCCGAATTTGTTGTACCATAGCT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTATGTGGCTCATTGTCCAGCGA----------
droGri2 scaffold_14906:11443552-11443654 + T---------------TCACTTTGTTCCACGTCTACCCTGTAGATCCGAATTTGTTGTACACTAGCT-TTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGCTCAATGCCCACCGA----------

dme-mir-100 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:18471419-18471548 + ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAT---------------------CA-ATGACA
droSim1 chr2L:18160327-18160456 + ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAT---------------------CA-ATGACA
droSec1 super_7:2092721-2092850 + ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAT---------------------CA-ATGACA
droYak2 chr2R:4988205-4988334 + ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAT---------------------CA-ATGACA
droEre2 scaffold_4845:5800004-5800133 - ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAT---------------------CA-ATGACA
droAna3 scaffold_12916:2378756-2378885 + ATACTCACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTTTATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAT---------------------CA-ATCGAA
dp4 chr4_group3:3634738-3634867 + ATACTTATATATGGACCATTAACAGAAACCCGTAATTCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAT---------------------TT-ATCACA
droPer1 super_1:5115309-5115438 + ATACTTATATATGGACCATTAACAGAAACCCGTAATTCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAT---------------------TT-ATCACA
droWil1 scaffold_180708:11622810-11622939 + ATAGTCACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGGCCAACAAAAT---------------------CGAAT--CG
droVir3 scaffold_12963:18449830-18449980 + ATACTCAAATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAGACATATAAAATATATTAACAAAA-ATGACA
droMoj3 scaffold_6500:6185704-6185833 - ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTTGGTTTTTGG-CAACAAA-G---------------------CA-AAGCAA
droGri2 scaffold_15252:6427650-6427777 + ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTTTATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAA-----------------------G-ACTACA

dme-mir-1000 antisense_to_intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:21414566-21414695 - TATACCATGAA----------------AT-------------CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATT--ATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACG--------AGCGG---------------------------------------------------------------------------------CGGACA-----G-
droSim1 chr3R:21243636-21243765 - TATACCATGAA----------------AT-------------CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTTACACTATATT--ATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACG--------AGCGG---------------------------------------------------------------------------------CGGACA-----G-
droSec1 super_13:202504-202633 - TATACCATGAA----------------AT-------------CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATT--ATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACG--------AGCGG---------------------------------------------------------------------------------CGGACA-----G-
droYak2 chr3R:25064545-25064667 + --------GAA----------------TT-------------GG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATT--ATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACG--------AGAGG---------------------------------------------------------------------------------CGGCCA-----G-
droEre2 scaffold_4820:6627814-6627943 + TATACCATGAA----------------AT-------------CG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATT--ATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACG--------AGCGG---------------------------------------------------------------------------------CGGTCA-----G-
droAna3 scaffold_13340:3670416-3670527 - TA-------------------------------------------GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACG--------AGG----------------------------------------------------------------------------------------A-----G-
dp4 chr2:21158113-21158302 - TATCGA----ATTACATACGGCGTCGGATCGGAGCAGATGAGAG-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAATT--ATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACA--------AAGAGAAGGAGAAGCTACAAAGCTACAAAGCTACGGAAAAATGCT--------------------------------------------ACA-----G-
droPer1 super_3:3932619-3932791 - TATCGA----ATTACATACGGCGTCGGATCGGAGCAGATGAGAG-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAATT--ATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACA--------AAGAG-----------------CTACAAAGCTACGGAAAAATGCT--------------------------------------------ACA-----G-
droWil1 scaffold_181130:14638697-14638859 + TCCATCTAACA----------------AA-------------AG-AGAGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATAGTAAC--ATATTC--ATTTCGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCTGTGGCAACG--------AGCGGAAAACT--------------------------------CTACTTCTGATGATGATAATAATGATTCAA--------------GTCAA-----A-
droVir3 scaffold_12855:6810247-6810376 - TATATCGTCG-----------------AT-------------CGTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTACG--TTAAGC--AATTGGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAA------AAAGC---------------------------------------------------------------------------------CAGAAA-----A-
droMoj3 scaffold_6540:25791543-25791693 + TCTATTAT-------------------------------------AGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTAAA--TTAAGC--AATTGGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACC--------AGAAGAAATCTAA--------------------------------------------------------TCGAGTCGACTATGCGGCATACACAGAGG-
droGri2 scaffold_14906:2964690-2964824 - TATAT---TTA----------------AT-------------CGTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTTAA--TTAAGC--AATTGGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTTGCTAGCAACTAAAAAGCGAGCAG---------------------------------------------------------------------------------CGAGCA-----GC

dme-mir-1001 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:23468173-23468292 - AGCCCGC-----------------------------------------------------------------------------------------GATG-ATGTAAGCTGGC-CTGTCCCTGGGTAAACTCCCAAGGATCAGGTGGAGATTGAATCC---CGATCCTTGGGTTTC------------------TGCTCTCGGGCAAGGTCAGTAGTGCCCGCGAAGGGCCC
droSim1 chr3R_random:1114763-1114882 - AGCCCGC-----------------------------------------------------------------------------------------GATG-ATGTAAGCTGGC-CTGTCCCTGGGTAAACTCCCAAGGATCAGGTGGAGATTGAATCC---CGATCCTTGGGTTTC------------------TGCTCTCGGGCAAGGTCAGCAGTGCCCGCGAAGGGCCC
droSec1 super_22:111563-111682 - AGCCCGC-----------------------------------------------------------------------------------------GATG-ATGTAAGCTGGC-CTGTCCCTGGGTAAACTCCCAAGGATCAGGTGGAGATTGAATCC---CGATCCTTGGGATTC------------------TGCTCTCGGGCAAGGTCAGCAGTGCCCGCGAAGGGCCC
droYak2 chr3R:23018685-23018798 + G------------------------------------------------------------------------------------------------ATG-ATGTAAACTGGC-CTGTCCCTGGGTAAACTCCCAATGATCCGGTGTACATTGAATTC---GGATCCTTGGGTTTG------------------AGCCCAAGGACAAGGACAGTAGTGCCCGCGAAGGGCCC
droEre2 scaffold_4820:4569064-4569195 + AGCCCGCGTAAGGTGTATA-----------------------------------------------------------------------------GATG-ATGTAAACTGGC-CTGTCCCTGGGCAAACTCCCAATGATGCGGTGTACATAGAATCC---CGATCCTTGGGCTTC------------------TGCCCACGGGCAAGGACAGTAGTGCCCGCGAAGGGCCC
droAna3 scaffold_13340:19221720-19221830 + GTGTATA-----------------------------------------------------------------------------------------GATG-ATGTGAGCTGTC-CTGTCCCTGGGAGG----------ATCACCTGTAGTATTAAATTAAATGGAACAAAGGTCTC------------------CCCCTAGGGGCAAGGACAGCATTGGCCACGA--GGCTC
dp4 chr2:3822386-3822523 - AGATGAT-----------------------------------------------------------------------------------------GATACATATAAGCTGATTCTCTCCCAGTGGCGGACACACGGCAGATGGTGGCTTTACCGATC---CGATAATTGAATTTTAACCAAAAGAAAACCACCTGCATTCGGGTGCCGCCCCT-GGGTCTGAG-AGGGCTG
droPer1 super_7:528167-528304 + AGATGAT-----------------------------------------------------------------------------------------GATACATATAAGCTGATTCTCTCCCAGGGGCGGATACACGGCAGATGGTGGCTTTACCGATC---CGATAATTGAATTTTAACCAAAAGAAAACCACCTGCTTTCGGGTGCCGCCCCT-GGGTCTGAG-AGGGCTG
droWil1 scaffold_181089:3707083-3707253 - CAAATGG--AAAGTGTATGGAGGCAAGAGTGTCCAGATTGCCTTGGCCAAATATTGGGATTATGCTCAATACCGATCCCACATAATTGTTAATTCGTTTA-GTATTATCTA-----------------TTATCTATTATTATTAT---------------------------------------GATTATTATCGAATTATTATTATTATTCTT-ATGATTATT-GAGATCC
droVir3 Unknown AGCTGAA-----------------------------------------------------------------------------------------ATTT-GTTTATACC----CTTT-CCAATGTTAAGCCCCTTGGAAAATGTA-----TGAATCT---CGTAACAT-------------------------------------------TCGTAACAAGATGTTCGCCA
droMoj3 Unknown AGCTGAA-----------------------------------------------------------------------------------------ATTG-GTTTATGCTC-----------------TTTCCCAAGCGTATAATGAATAC-------------------------------------------------CAAAGAAAATACCTAACACTCGTAAGAAG---
droGri2 Unknown AGCTAGC-----------------------------------------------------------------------------------------CA--------------------------------------------------------------------------------------------------------------------------------------

dme-mir-1002 antisense_to_intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:13747594-13747712 - TGT----------AT-------------------CGGAATT--------AA-------TTAGAAATTATATATTTAAGTAGTGGATACAAAGGGCGAT-TTG-ATAT-AAA--AGTGTCGCATTGTATGACCTACTTAACTAGCTGATTTTGTATCCCAACATAATA--G
droSim1 chr2L:13506512-13506649 - TGT----------CGGAATAAATATAATAATAATCGGAAAT--------AT-------TTAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGAT-TTG-ATAT-AAA--AGTATCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATTCCAACATAAAA--T
droSec1 super_3:14439-14576 - TGT----------CGGAATAAATATAATAATAATCGGAAAT--------AT-------TTAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGAT-TTG-ATAT-AAA--AGTATCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATTCCAACATAAAA--T
droYak2 chr2L:10159916-10160031 - TATGCTTCGAAGTTTTAA------------------------------------------AAAAATTATATATTTAAGTAGTGGATACAAAAGGCGAT-T-G-ATAT-AAA--AATGTCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATCCCAACTTA------
droEre2 scaffold_4929:11719022-11719139 + TCT----------AT-------------------ATT----AATTG----A-------T-CAAAATTATATATCTAAGTAGTGGATACAAACGGCGAT-TTG-GTAT-AAA--AATGTCGCATTGTATGACCTGCTTAACTAGCTGATTTTGTATCCCAACGTACAA--A
droAna3 scaffold_12943:1815398-1815512 - TCA----------TA-----------------------AATATCTGTGCAA-------A-CTAAATCATGTGTTTAAGTAGGCAATACAT-GGGCGAC-TAA-ATAA-AAT--ATACTCGCAATGTATAGCCTACATAACTAGTTGATTTTTGCAAGCATC--------C
dp4 chr4_group1:1722923-1723028 + CCT----------CTCAA------------------------------------------AATAATCGGGCACCTAAGTAGTTGATACAA-GGGCGAT-AAT-GTAAAAGA--ACTTTCGCATTGTGTGACCTACTTAAATGCTCGATTGTTTCAAGCAACCT-------
droPer1 super_5:3483460-3483570 - CCT----------CTCAA------------------------------------------AATAATCGGGCACCTAAGTAGTTGATACAA-GGGCGAT-AAT-GTAAAAGA--ACTTTCGCATTGTGTGACCTACTTAAATGCCCGATTGTTTCAAGCAACCTCTAA--A
droWil1 scaffold_180772:545437-545562 + TCA----------TT--------------------TG----ATCTGGTCAT-------TGAAAAATGTTACACTTAAGTAGTTAATACAA-TGGCGAT-TCGTATTC-CATTGTACATCGCATTGTGTGAGTTACTTTGTTGAGAGATTTTTCCAAACAACAAGATAATC
droVir3 scaffold_12723:5043888-5043982 - GCA----------AT---------------------------------------------GAAAATTGAACGCTTAAGTAGTTAATACAA-GGGCGAGTTTT-TTC----T--TGCATCGCATTGTGTGACCTACTTAAATGACAAATTTTCA--AG--AC--------A
droMoj3 scaffold_6500:16664711-16664807 + TGA----------T----------------------------------------------GAAAATTCAGCACTTAAGTAGTTGATACAA-AGGCGAA-TTT-AT-T-AAA--TTTATCGCATTGTGTGAGCTACTTAAATGACAGATTTTTA-T-AGTAC--------G
droGri2 scaffold_15126:8057211-8057331 - TGT----------AA------------------------ATATTTATAATCACTGTATT-GAAAATTTAACACTTAAGTAGTTGATACAA-GGGCGAGTTTC-ATA----A--AGTATCGCATTGTGTGACCTACTTGAATGAGAGATTTTTA--AGATACT--GTA--A

dme-mir-11 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:17448204-17448308 - AGATCTAT--GTGAGGCGC-ACTTGTCAAGAACTTTCTCTGTGACCCGCGTGTACT------------TAAAAGCCGCATCACAGTCTGAGTTCTTGCTGAGTGC-GAAATCCTCGAAGCA------------------------
droSim1 chr3R:4022563-4022667 + AGATCTCC--ATGAGGCGC-ACTTGTCAAGAACTTTCTCTGTGACCCGCGTGTACT------------TAAAAGCCGCATCACAGTCTGAGTTCTTGCTGAGTGC-GAAATCCTCGAAGCA------------------------
droSec1 super_6:4043853-4043957 + AGATCTCC--ATGAGGCGC-ACTTGTCAAGAACTTTCTCTGTGACCCGCGTGTACT------------TAAAAGCCGCATCACAGTCTGAGTTCTTGCTGAGTGC-GAAATCCTCGAAGCA------------------------
droYak2 chr3R:6285759-6285863 - AGTTCTCC--ATGAGGCGC-ACTTGTCAAGAACTTTCTCTGTGACCTGCGTGTACT------------TAAAAGCCGCATCACAGTCTGAGTTCTTGCTGAGCGC-GAAATCCTCAAAGCA------------------------
droEre2 scaffold_4770:4217167-4217271 + AGATCTCC--ATGAGGCGC-ACTTGCCAAGAACTTTCTCTGTGACCTGCGTGTACT------------GAAAAGCCGCATCACAGTCTGAGTTCTTGCTGAGCGC-GGAATCCTCGAAGCA------------------------
droAna3 scaffold_13340:5675670-5675780 + ATCTCTA-ATATGAGGCGC-ACTTGCCAAGAACTCTCTCTGTGACTTGTGTCCTTTTT--TT------CGAAACTCACATCACAGTCTGAGTTCTTGCTGAGAGCGGGAATCCTCCAATCG------------------------
dp4 chr2:23857524-23857651 - AACACTCGATTTGAGGCCC-TCTTGTCAAGAACTTATTCTGTGACCTGCGTGACATTT--------------AGCCACATCACAGTCTGAGTTCTTGCTGAGCGT-GAACT-CGCCAACCAACATGAGTGAATAGCCCCCAAAAA
droPer1 super_3:6634087-6634214 - AACACTCGATTTGAGGCTC-TCTTGTCAAGAACTTATTCTGTGACCTGCGTGACATTT--------------AGCCACATCACAGTCTGAGTTCTTGCTGAGCGT-GAACT-CGCCAACCAACATGAGTGAATAGCCCCCAAAAA
droWil1 scaffold_181089:8479022-8479138 + ACAGCAAA--GAGAAGCCCTTCTTGTCAAGATCTCTCTCTGTGACCTGCGTGAGATTT--ATCATATATGAAAACCGCATCACAGTCTGAGTTCTTGCTGAGCGGTGAGCTAAGCAAGACA------------------------
droVir3 scaffold_13047:6338937-6339046 + GGTTTTA---TTGAAGCGC-ACTTATCAAGAACTTTTTCTGTGACTTGCGTGAACTCTTATA------TGCAAACCGCATCACAGTCTGAGTTCTTGCTTAGCGC-GCACTTCGCACAGCA------------------------
droMoj3 scaffold_6540:1740109-1740221 - CGCATTCGATTTGAAGCGC-ACTTAACAAGAACTTTTTCTGTGACCTGCGTGAATTCCTATA------TGCAAACCGCATCACAGTCTGAGTTCTTGCTTAGCGC-GCACTTCGCACAGCA------------------------
droGri2 scaffold_14906:11659470-11659581 + CGAATTCGAAATGAAGCCC-ACTCGTCAAGAACTCTCTCTGTGACTTGCGTGAACTTTCATG------TGAAAATCGCATCACAGTCTGAGTTCTTGCTGAGCGC-GCT-TTCGCACCACA------------------------

dme-mir-12 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:15403491-15403594 + AA-----------------GGAG------CAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCTTAAATCCAACAACCAGTACTTATGTCATACTACGCCGTGCACGGATCGCACTAA
droSim1 chrX_random:4024315-4024418 + AT-----------------GGAG------CAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCTGAAATCCAACAACCAGTACTTGTGTCATACTACGCCGTGCACGGATCGCACTAA
droSec1 super_73:137914-138017 + AT-----------------GGAG------CAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCTGAAATCCAACAACCAGTACTTGTGTCATACTACGCCGTGCACGGATCGCACTAA
droYak2 gnl|ti|371645083:614-718 + AA-----------------GGAG------CAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCTTAAATCCAACAACCAGTACTTATGTCATACTACGCCGTGCACGGATCGCACTAA
droEre2 scaffold_4690:11630938-11631041 - AA-----------------GGAG------CAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCTTAAAACCAACAACCAGTACTTATGTCATACTACGCCGTGCACGGATCGCACTAA
droAna3 scaffold_12929:2898571-2898667 - -------------------------------GCGTCTGTACGGCTGAGTATTACATCAGGTACTGGTGTGCCTTTAATCCAACAACCAGTACTTATGTCATACTACGCCGTGCACCGATCGCACTAA
dp4 chrXL_group1a:977995-978098 + AT-----------------CCAG------CAGCGTCTGTACGGCTGAGTATTACATCAGGTACTGGTGTGCTTTAAATCCAACAACCAGTACTTATGTTATACTACGCCGTGCACTGATCGCACTAA
droPer1 super_26:1092636-1092739 + AT-----------------CCAG------CAGCGTCTGTACGGCTGAGTATTACATCAGGTACTGGTGTGCTTTAAATCCAACAACCAGTACTTATGTTATACTACGCCGTGCACTGATCGCACTAA
droWil1 scaffold_180702:1592742-1592841 - ----------------------G------CAGCGCCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCTTTAATCCAACAACCAGTACTTATGTCATACTACGCCGTGCACGGATCGCACTAA
droVir3 scaffold_12970:2049296-2049416 + AACAGCCGCATCAGCATCCGCAT------CAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCATTTAACTAACAACCAGTACTTATGTCATACTACGCCGTGCAGTGGGCGCACTAA
droMoj3 scaffold_6359:3259767-3259875 + AG------------CATCAGCAT------CAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCAATTAACTAACAACCAGTACTTATGTCATACTACGCCGTGCAGTGGGCGCACTAA
droGri2 scaffold_14853:6951707-6951816 - AA-----------------GCAGCATCACAAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCATTTAACCAACAACCAGTACTTATGTCATACTACGCCGTGCAGTGGGCGCACTAA

dme-mir-124 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:17566355-17566484 + C-CCA----------------A--------------------GTGTCCTTCGTCATTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTATATGTATTTCCACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGCAGTTCTACAA-----ATTACTCATACCCAATA
droSim1 chr2L:17270490-17270619 + C-CCA----------------A--------------------GTGTCCTTCGTCATTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTATATGTATTTCCACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGCAGTTCTACAA-----ATTACTCATACCCAATG
droSec1 super_7:1207305-1207434 + C-CCA----------------A--------------------GTGTCCTTCGTCATTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTATATGTATTTCCACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGCAGTTCTACAA-----ATTACTCATACCCAATG
droYak2 chr2R:3533165-3533294 - C-CCA----------------A--------------------GTGTTCTTCATCATTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTATATGTATTTCCACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGCAGTTCTACAA-----ATTTCTCATACCCAATG
droEre2 scaffold_4845:6683953-6684082 - C-CCA----------------A--------------------GTGTCCTTCATCATTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTATATGTATTTCCACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGCAGTTCTACAA-----ATTACTCATACCCAATG
droAna3 scaffold_12916:3309677-3309806 - C-CAG----------------A--------------------GGCTTTTGTGTCGTTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTATATGTATTTCGACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGAAACTCTACAA-----ACTACAAATGACATATT
dp4 chr4_group3:10867616-10867737 - T-CTC----------------A--------------------GTGC---TCGTCGTTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTATATGTATTTCGACCATAAGGCACGCGGTGAATGCCAAGAGCGGACGAAACTCTACTA----------TCAAAAACAGCA
droPer1 super_8:2078713-2078834 - T-CTC----------------A--------------------GTGC---TCGTCGTTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTATATGTATTTCGACCATAAGGCACGCGGTGAATGCCAAGAGCGGACGAAACTCTACTA----------TCAAAAACAGCA
droWil1 scaffold_180764:940183-940306 - T-TCT---------------CA--------------------GA-------GTCGTTTGGTACGTTTTTCTCCTGGTATCCACTGCAGGCCTATATGTTATTTGACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGAAATTCTACAA-----AA-ACCAAAACGCAAAA
droVir3 scaffold_12963:16493143-16493272 + G-ACAACATT---------------------------CGTGAGTG----CCGTCGTTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTCTATGAATTTTGACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGAAACTCTACAA-----TTAACAAA-----AATA
droMoj3 scaffold_6500:21419441-21419593 + CGACAA--TTGCCCTGCGCTCAGCGTGCGGGACTCGCCGTGAGTG----ACGTCGTTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTCTATGAATTTTGACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGAAACTCTACAA-----AA--------TCCAACA
droGri2 scaffold_15252:13906813-13906947 + G-TGG----------------T--------------------GTGTGTGCCGTCGTTTGGTACGTTTTTCTCCTGGTATCCACTGTAGGCCTCTATGTTTTTTGACCATAAGGCACGCGGTGAATGCCAAGAGCGAACGAAACTCTACACTTCCATTCAAATATAACCAGCA

dme-mir-125 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:18472300-18472439 + AAT-----ATTGGCATTGGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAGTA------------------------AAAAATAAGGC
droSim1 chr2L:18161211-18161350 + AAT-----ATTGGCATTGGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAGTA------------------------AAAAATAAGGC
droSec1 super_7:2098251-2098391 + AAT-----ATTGGCATTGGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAGTA-----------------------AAAAAATAAGGC
droYak2 chr2R:4989099-4989238 + AAT-----ATTGGCATTGGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAGTA------------------------AAAAATAAGGC
droEre2 scaffold_4845:5799089-5799228 - AAT-----ATTGGCATTGGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAGTA------------------------AAAAATAAGGC
droAna3 scaffold_12916:2379461-2379598 + AAT-----ATTGGTATTGGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAATA------------------------CAAAA--AAGA
dp4 chr4_group3:3635996-3636136 + AGT-----ATTGGTATGAGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTATAC-----------------------AAAAAAAAAAGC
droPer1 super_2335:2506-2645 + AGT-----ATTGGTATGAGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTATAC------------------------AAAAAAAAAGC
droWil1 scaffold_180708:11623324-11623458 + ATT-----ATTGGTATTAGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTGGCA------------------------AAA-----AGC
droVir3 scaffold_12963:18451638-18451806 + TATTACACATTGGTATTAGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAGTAACAAAAAAACAAAAACAATTACAAAAAAATAAGAA
droMoj3 scaffold_6500:6184266-6184401 - CAC-----ATTGGTATTAGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAGTA------------------------AAAAGTA----
droGri2 scaffold_15252:6428908-6429045 + CAC-----ATTGGTATTAGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAGTA------------------------AAAAA--AAAC

dme-mir-133 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:20616602-20616729 + CAT--------TCGAGAA---------------------------TTTCCACC--------TGCAAC-ACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT-T-TCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAG-CCTA----------------GTGAAC
droSim1 chr2L:20179920-20180047 + CAT--------TCGAGAA---------------------------TTTGCACC--------TGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT-T-TTAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACATCGAAAG-CCGA----------------GCGAAC
droSec1 super_18:496867-496993 + CAT--------TCGAGA----------------------------TTTGCACC--------TGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT-T-TTAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACATCGAAAG-CCTA----------------GCGAAC
droYak2 chr2R:6964793-6964921 + TAT--------TCCAGAA---------------------------TTTCCTCC--------TGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT-TTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAGT-ACGA----------------GTAAAC
droEre2 scaffold_4845:3836606-3836724 - AT---------------------------------------------TTCCTC--------TGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT-T-CCTAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGCCAACTAAAT-TCGA----------------GTGAAC
droAna3 scaffold_12916:7117508-7117634 + T----------TCGTGAA---------------------------TGATTATC--------TGCAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATCT-TTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAAAGT-ACAA----------------GTGAAA
dp4 chr4_group3:7699977-7700121 - GAC--------GCGTGTG---------------------------TGCTTATG--------TACAACGGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTT-TATCAAGTATTTGGTCCCCTTCAACCAGCTGTAT-CAGTGGTTGATTCCAACAAAAA-ACAAAAGGCGCCAACAAATAATAAAG
droPer1 super_1:9145698-9145865 - TAT--------TTGTATGTGTAT--TT--GTATGTGACGCGTGTGTGCTTATG--------TACAACGGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTT-TATCAAGTATTTGGTCCCCTTCAACCAGCTGTAT-CAGTGGTTGATTCCAACAAAAA-ACAAAAGGCGCCAACAAATAATAAAG
droWil1 scaffold_180708:2027542-2027651 + -------------------------------------------------------------TACAAC-ACTGAATGTAGCTGGTTGACATCGGGTCAGATCTATTTATTTGAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATCCCAACAAAAA-GCAA-----------------TGGAA
droVir3 scaffold_12963:13475783-13475914 - CAA--------ACGAAGATATAT--ATTGCCAA--------TCGAATCACATT--------CACAAC-GCTGTGTGTAGTTGGTTGACATCGGGTCAGATCTATTT-CTGAAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGAAGCCAACAA------------------------------
droMoj3 scaffold_6500:24707638-24707772 + CATGAAATAAATTGTGT------------------------TGTGTACTCAAACAAACATCCACAAC-GCTGTGTGTAGTTGGTTGACATCGGGTCAGATCTGTTT-T-TCGAGAATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAAGT----------------------------
droGri2 scaffold_15126:6389834-6389991 + CAA--------ACAAAACTATATACATGATTAA--------TTTGAATTTATT--------TACAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTT-ATTCGAGTATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGTCAACAAGTGAACTTAAG-----AAC-AATAGTGAAA

dme-mir-137 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:11952744-11952864 - TTACGATGGCGT------------CGC--------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAA--TCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATAAAA---------------------------------AGAG
droSim1 chr2R:10688339-10688459 - TTACGATGGCGT------------CGC--------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAA--TCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAA---------------------------------AGCG
droSec1 super_1:9448872-9448992 - TTACGATGGCGT------------CGC--------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAA--TCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAA---------------------------------AGCG
droYak2 chr2R:17032219-17032325 + CC---------------------------------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGACA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATTAAA---------------------------------AAAG
droEre2 scaffold_4845:13905048-13905167 + TTACGGTGGCGA--------------------------------------------CTCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGACA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAA---------------------------------GGGG
droAna3 scaffold_13266:15447223-15447345 + TTAAAGTGGCAA-------------------------------------------CCTGGAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAAA--TGCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATTTGTTCAGCAATCGAA---------------------------------GTGG
dp4 chr3:16385856-16386036 - TTAAGATGACAG------------CGACGG-----CCAAGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGATA--TCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATCAAACTGAAACGGAAAGTGTCTGTGAAAGGTGTCCTTAAAG
droPer1 super_4:376928-377074 + TTAAGATGACAG------------CGACGGCCACGCCACGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGATA--TCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATCA---------------------------------------
droWil1 scaffold_181141:1110993-1111093 - TT----------------------------------------------------------------TAATGGCCACGTGTATTCTTATAGCTGTAACCTGTTA--TACAAAATGTTATTGCTTGAGAATACACGTAGTTAA-CTAGATTCGTTCAACGGGTCAA---------------------------------ACAA
droVir3 scaffold_10468:1951-2100 - GTACGTCGGAGCAGACACGACAGCGG---------ACACAACAAT-----TGGAAATTGGAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTAA-CAAGATTCTCTCAACGATCCAA----------------------------------TAA
droMoj3 scaffold_6496:10610032-10610171 + CAACGGA-GTGT------------GGA---------CAC---AAT-----TGGAAATTGGAATCGGCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTAG-CCAGATTCGCCCAACATGGCAATGGCA----------------------------ACAT
droGri2 scaffold_15245:16918481-16918602 - GGAGATTGGAAA-------------------------------------------ATTAAAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTAA-CAAGATTGCCTCAACGACTCCA---------------------------------ATAA

dme-mir-13a intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:11243249-11243353 - CCAAG----C------------------CAT--AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGAC-TATTA-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGA-AT-C--GCG----GCA----------------------GCG
droSim1 chr3R:10237822-10237926 + CCAAG----C------------------CAT--AGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGAC-TATTA-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGA-AT-C--TCG----GCA----------------------GCG
droSec1 super_0:10705053-10705157 + CCAAG----C------------------CAT--AGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGAC-TATTA-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGA-AT-C--TGG----TCA----------------------GCG
droYak2 chr3R:15188577-15188681 + CCAAG----C------------------CAT--AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGCC-TATTA-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGA-AT-C--TCG----GCA----------------------ACT
droEre2 scaffold_4770:10769389-10769493 - CCAAG----A------------------CAC--AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGAC-TATTA-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGA-AT-T--TAA----AAA----------------------GCG
droAna3 scaffold_13340:12827611-12827739 - ACAAGAATCCCCTCAAAAAAGGACGATCCATCGAGTTCTTACGTAACTCCTCAAAG-GGCTGTGAAATGTTGCCA--TTA-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGGGA-AT-C-GTCA----GAA----------------------AAC
dp4 chr2:9824930-9825029 + CC-------C------------------CA-----TACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCAT--TTA-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGG-AA-TGGCCA----GCA----------------------ATC
droPer1 super_0:10660066-10660165 - CC-------C------------------CA-----TACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCAT--TTA-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGG-AA-TGGCCA----GCA----------------------ATC
droWil1 scaffold_181089:2143204-2143324 - CCGTT----CCGGCAAAAGATG-------GA--ATTTCTTACGTAACTCTTCAAGGGGGTTGTGAAATGTTGCCATTTTATTCAACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAGTATT--CCT----GCA----------------------ACA
droVir3 scaffold_13047:13335625-13335725 + CCACT----C-----------------------AATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTTGCCG--TTA-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGA-AT-T--GCT----TAA----------------------ATT
droMoj3 scaffold_6540:10568336-10568468 + CTCCG----C-----------------CCATTCAATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTAGCCA--TTA-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGTGA-AT-T--GCTTTCAGCATTGTCCCATCCGTTTTGTGTCACTG
droGri2 scaffold_14906:4357674-4357778 - CCAAG----C-----------------CCACCCAATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTGGGTA--TTA-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGA-AT-T--GCTT---T-------------------------CA

dme-mir-13b-1 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:11243115-11243212 - CACG-----------------------------------------------------TCTTTCTTATACCATGTCGTTAAAATGTTTGTGAACTTATGT---ATTC-ACAATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAA
droSim1 chr3R:10237959-10238056 + CGCG-----------------------------------------------------TCTTTCTTATACCATGTCGTTAAAATGTTTGTGAACTTATGT---ATTC-GCAATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAA
droSec1 super_0:10705190-10705287 + CGCG-----------------------------------------------------TCTTTCTTATACCATGTCGTTAAAATGTTTGTGAACTTATGT---ATTC-GCAATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAA
droYak2 chr3R:15188722-15188819 + CACG-----------------------------------------------------TCTTTCTTATACCATGTCGTTAAAATGTTTGTGAACTTATGT---ATTC-GCAATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAA
droEre2 scaffold_4770:10769258-10769355 - AACG-----------------------------------------------------TCTTTCTTATACCATGTCGTTAAAATGTTTGTGAACTTATGT---ATTC-GCAATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAA
droAna3 scaffold_13340:12827469-12827566 - --CA-----------------------------------------------------TCTTTCTTATACCATGTCGTTAAAAGGCTTGTGACCTTATGT---ATTTCGCAATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAC
dp4 chr2:9825076-9825174 + AGCA-----------------------------------------------------TCTTTCTTATACCATGTCGTTAAAATGTTTGTGACCTTATGT---ACTCTTGAATCATATCACAGCCATTTTGACGAGTTTGGGTACAGAAATTTCAA
droPer1 super_0:10659921-10660019 - AGCA-----------------------------------------------------TCTTTCTTATACCATGTCGTTAAAATGTTTGTGACCTTATGT---ACTCTTGAATCATATCACAGCCATTTTGACGAGTTTGGGTACAGAAATTTCAA
droWil1 scaffold_181089:2143062-2143162 - TGCA-----------------------------------------------------ACTTTCTTATACCATGTCGTTAAAATGTTTGTGACTTTATGTTGTGTCT-CTATTCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAA
droVir3 scaffold_13047:13335778-13335875 + TGCA-----------------------------------------------------ATTTTCTTATACCATGTCGTTAAAATGCCTGTGACCTTATGT---ATTT-TATATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAA
droMoj3 scaffold_6540:10568509-10568606 + TGCA-----------------------------------------------------ATTTTCTTATACCATGTCGTTAAAATGTCTGTGACCGTATGT---ATTC-ACTATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAA
droGri2 scaffold_14906:4357489-4357639 - CGTGCAGTCGCCGCCTCCTCCTGTTCCTCCTCCTTCTCCTTTGTGTGTTTCTTTCTTTCTTTCTTATACCATGTCGTTAAAATGCTTGTGACCTTATGT---ATTT-TATATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATGTCAA

dme-mir-13b-2 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:8985248-8985347 + TCTA---CCTCT------------------GCT------------------GTCTATTAACGCGTCAAAATGACTGTGAGCTATGTGG----ATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GACAG-CCAGCCT
droSim1 chrX_random:2632466-2632565 + TCTG---CCTCT------------------GCT------------------GTCTATCAACGCGTCAAAATGACTGTGAGCTATGTGG----ATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAG-CCAGCCT
droSec1 super_34:345603-345702 + CCTG---CCTCT------------------GCT------------------GTCTATCAACGCGTCAAAATGACTGTGAGCTATGTGG----ATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAG-CCAGCCT
droYak2 chrX:12330556-12330651 - CTTA---CCCCT------------------GCT------------------GTCTAGTAACGCGTCAAAATGACTGTGAGCTATGTGG----ATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGCTG-GCCAGT-----CT
droEre2 scaffold_4690:6132295-6132393 - TTTAAACCCCCT------------------GCT------------------GTCTATTAGCGCGTCAAAGTGACTGTGAACTATGTGG----ATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGC-C----C
droAna3 scaffold_13047:797460-797571 + TGTCCCGCTTCT------------------GCTT----CATTAC--CT---GTTTCCCAGCGCGTCGAAATGACTGTGACTTATGCGT----ATTTGA-TGTCATATCACAGCCATTTTGACGAGTTTGGTG-GACAGT-GAAAGT
dp4 chrXL_group1e:7000785-7000885 - GCTA---CTGCT------------------GCT------------------GCACATTTACGCGTCAAAATGACTGTGAGCTATGTGT----TTTTGA-TCTCATATCACAGCCATTTTGACGAGTTTGATG-TGCAGTCCCACTC
droPer1 super_13:1553253-1553353 + GCTA---CTGCT------------------GCT------------------GCACATTTACGCGTCAAAATGACTGTGAGCTATGTGT----TTTTGA-TCTCATATCACAGCCATTTTGACGAGTTTGATG-TGCAGTCCCACTC
droWil1 scaffold_180777:2053037-2053171 + TCCC---CCAATGTACCTACCCCTGCAACTGCTGTGCTT---ACAACTGATGTCCATGGTCGCGTCAAAATGACTGTGAGCTATGTTAACCGGTCAGAAATTCATATCACAGCCATTTTGACGAGTTCGATG-GGCAT-AC---GA
droVir3 scaffold_12970:9304312-9304422 + TCTC---TCGCT------------------GCT---------GCCAATGCTCCATATTGGCGCGTCAAAATGACTGTGAGCTATGTTGTTGCATTTGCCATTCATATCACAGCCATTTTGACGAGTTTGATGTGGCAGC-CA----
droMoj3 scaffold_6473:13342549-13342650 - TCCT---CTAAT------------------GCT------------------CCATATTTGCGCGTCAAATTGACTGTGAGCTATGTTT----ATGAGATTATCATATCACAGCCATTTTGACGAGTTTGATGTGGCAG-CCACCAA
droGri2 scaffold_15203:306998-307104 + TCG-------TT------------------GCT---------ATCAGTGCTCCATATTGGCGCGTCAAATTGACTGTGAGCTATGTTGTTGCAGTTGTAATTCATATCACAGCCATTTTGACGAGTTTGATGTGGCAGC-CA----

dme-mir-14 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:5441252-5441344 + ACGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTATTAAATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA
droSim1 chr2R:4072822-4072914 + ACGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTATTAAATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA
droSec1 super_1:3055916-3056008 + ACGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTATTAAATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA
droYak2 chr2L:18072267-18072359 + ACGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTATTAAATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA
droEre2 scaffold_4929:8915902-8915994 - ACGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTATTAAATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA
droAna3 scaffold_13266:183955-184047 - ACGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTATTAAATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA
dp4 chr3:15883112-15883203 + ACGTACTGCATTC-ATGTGGGAGCGAGACGGGGACTCACTGTGCTTTTGAAGTAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA
droPer1 super_4:878748-878839 - ACGTACTGCATTC-ATGTGGGAGCGAGACGGGGACTCACTGTGCTTTTGAAGTAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA
droWil1 scaffold_180700:3302349-3302441 + ACGTACTGCAACCTATGTGGGAGCGAGACGAGGACTCACTGTGCTTTTTATATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA
droVir3 scaffold_10324:225313-225405 + ACGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTTTTATATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA
droMoj3 scaffold_6496:2042842-2042934 + ACGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGATTTTTATATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA
droGri2 scaffold_15245:15401666-15401758 - ACGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTTTTATATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTA

dme-mir-184 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:9216892-9217021 - CTG--GGCTG--------ACCCGAG-----------GGTTGGCCGGTGCATTCGTACCCTTATCATTCTCTCGCCCCGTGTGCACTTAAAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAATTCATCAAACCAATACCCA--------TT
droSim1 chr2R:7673827-7673955 - CTG--GGCTG--------ACCCGAG-----------GGTTGGCCGGTGCATTCGTACCCTTATCATTCTCTCGCCCCGTGTGCATTTAAAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAATTCATCAAGC-AATCCCCA--------TT
droSec1 super_1:6740004-6740132 - TTG--GGCTG--------ACCCGAG-----------GGTTGGCCGGTGCATTCGTACCCTTATCATTCTCTCGCCCCGTGTGCATTTAAAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAATTCATCAAGC-AATCTCCA--------TT
droYak2 chr2R:7742247-7742374 + CTG--GGCTG--------ACCCGAG-----------TGTTGGCCGGTGCATTCGTACCCTTATCATTCTCTCGCCCCGTGTGCAT-TGAAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAATTCATCAAGC-AATCCCCA--------TT
droEre2 scaffold_4845:16598085-16598213 + CTG--GGCTG--------ACCCGAG-----------GGTTGGCCGGTGCATTCGTACCCTTATCATTCTCTCGCCCCGTGTGCATTTAAAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAATTCGTCAAGC-AATCCCCA--------GT
droAna3 scaffold_13266:16524568-16524693 - CCCAGTGCCG--------G--CGAG------------TCCGGCCGGTGCATTCGTACCCTTATCATTCTCGCGCCCCGTGTGCATAATGAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAATTCATCAGGT-TG--TCCA--------TC
dp4 chr3:696696-696816 + --G--GGTCG--------GCCCGGGGACTCCG----GGTCGACCGGTGCATTCGTACCCTTATCATTCTCGCGCCCCGTGTGCATTAAAAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAACTCATCA----------------------
droPer1 super_2:863138-863258 + --G--GGTCG--------GCCCGGGGACTCCG----GGTCGACCGGTGCATTCGTACCCTTATCATTCTCGCGCCCCGTGTGCATTAAAAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAACTCATCA----------------------
droWil1 scaffold_181009:2073162-2073280 - ACG------------------CGAAGAGTCAGTTAAAGCTGACCGGTGCATTCGTACCCTTATCATTCTCGCGCCCCGTGTGCATATCTAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAACTCAACA----------------------
droVir3 scaffold_12875:243286-243412 + TTG--GGCT-----------------------------TTGGCCGGTGCATTCGTACCCTTATCATTCTCGCGCCCCGTGTGCATATCTAGACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAAGTCAACTAAC-TAAGTGCAGCAACTATTT
droMoj3 scaffold_6496:5255786-5255918 - AAT--GGCCAATCTGCCGT--TGGG-----------CATTGGCCGGTGCATTCGTACCCTTATCATTCTCGCGCCCCGTGTGCATATCTATACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAAGTCAACTAA---ATACATG--------CG
droGri2 scaffold_15245:10719551-10719668 - CCA--GCCTG--------CATATGG-----------TTTTGGCCGGTGCATTCGTACCCTTATCATTCTCTCGCCCCGTGTGGATAACTATACAACTGGACGGAGAACTGATAAGGGCTCGTATCACCAACTCATCAAA--------------------

dme-mir-190 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:8564884-8565013 + ACTT------------------------------------------GCCCTT-----------------------CAAAA---------C-GA-------ACTAA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCCAATCTACTAAAACA-------
droSim1 chr3L:8005898-8006027 + ACTT------------------------------------------GCCCTT-----------------------CAAAA---------C-GA-------ACTAA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTATCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCCAATCTACTAAAACA-------
droSec1 super_0:844136-844265 + ACTT------------------------------------------GCCCTT-----------------------CAAAA---------T-GA-------ACTAA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCCAATCTACTAAAACA-------
droYak2 chr3L:3348658-3348787 - ACTA------------------------------------------GCCCTT-----------------------CAAAA---------C-GA-------ACTAA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCCAATCTACTAAAACA-------
droEre2 scaffold_4784:5482466-5482595 - ACTA------------------------------------------GCCCTT-----------------------CAAAT---------C-GA-------ACTAA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTAGCCTTCGCCAATCTACTAAAACA-------
droAna3 scaffold_13337:8074872-8075002 - ACTC------------------------------------------GCCTCT-----------------------CCAAA---------CACA-------ACTAA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACTCTCGCCAATCTACTAAAATA-------
dp4 chrXR_group3a:147689-147845 - ACTA------------------------------------------GT---TAACCCTAACTCTCATCTGCCCACAAA--CCAACCCAAC-GA-------ACTAA-----------TTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCGGAAATCTACTAAACCC-------
droPer1 super_23:151050-151206 - ACTA------------------------------------------GT---TAACCCTAACTCTCATCTGCCCACAAA--CCAACCCAAC-GA-------ACTAA-----------TTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCGGAAATCTACTAAACCC-------
droWil1 scaffold_180949:5214317-5214457 + ACTT------------------------------------------GCCCT-----------CTCATCTGCCCACAAAAA---------C-GA-------ACTAA-----------TTGATGGTCCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGTCGG-AATCTACTAAAAAC-------
droVir3 scaffold_13049:6215347-6215479 + AC-------------------------------------------------------------------------CAAAT---------C-AA-------ACTACCCCCCACTCATCTAATGATTCCAGTAAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTGAAACTCTACTAAACCA-------
droMoj3 scaffold_6680:4536880-4537026 + AGCC------------------------------------------AC---------------------------CAAAATCAACCAAAC-TACCTATCCACTAC------CTCATCTAACGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGCTTAAACTCTACTAAAA-A-------
droGri2 scaffold_15072:36258-36427 + ACTACCAATAAAATAAAAATCCAACCAATCAACCAACCAACCAACTACCCA------------------------------------------------------------CTCATCTAATGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTGAAACTCTACTAAAAACAAATCAA

dme-mir-193 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:21567099-21567236 + TTTGATCG-----C-----------------AATCCGTGTGTGCCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCA--TATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTCGAC-----
droSim1 chr3L:20903305-20903442 + TTCGATCG-----C-----------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCA--TATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTCGAC-----
droSec1 super_11:1487328-1487465 + TTCGATCG-----C-----------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCA--TATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTCGAC-----
droYak2 chr3L:18945598-18945735 - TTTGATCG-----G-----------------AATCCGTGAGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCA--TATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTCGAC-----
droEre2 scaffold_4784:21221186-21221323 + TTTAATCG-----G-----------------AATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATAGCCA--TATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTCGAC-----
droAna3 scaffold_13337:17070826-17070956 - CCGAATCG-----A-----------------AATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCA--TATTCATAAATTCTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTA------------
dp4 chrXR_group6:2746028-2746170 - CTCAATTG-----G-----------------AATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCG--TATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCTTAACAATAA
droPer1 super_9:1042494-1042636 - CTCAATTG-----G-----------------AATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCG--TATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCTTAACAATAA
droWil1 scaffold_180727:1082196-1082335 - TTTAATTA-----A---------TC------AATCTGTGTGTGCGCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACA-AGTCAAAAATTTATT-ATCATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGACGAAAT-----
droVir3 scaffold_13049:17910638-17910773 + CTTAATGG-----T-----------------TGTAAGCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATATATATATG--TAT-CGTAAATCTTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAAAACCTCAG-TATAAC-----
droMoj3 scaffold_6680:23178993-23179110 + ------------------------------------GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAATA------TTATCATAAGTTCTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAACACCTCAG-TTCAA------
droGri2 scaffold_10030:24062-24212 - TATAACTATCGAGGAAATTTACATAAATGTGCTAAAGCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAAGACCTT--TA-TCGTAAATCTTCTACTGGCCTACTAAGTCCCAATATAATGGGAGTAAAACCCTCA-------------

dme-mir-210 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:18022237-18022366 + CCACG-----------------------------------------------TCCGGAA-----CCGAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTTA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAG-----C----------------------------------------------------------CAGCCATTGTTCCATC
droSim1 chrX_random:4635946-4636075 + CCACG-----------------------------------------------TCCGGAA-----CCGAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTTA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAG-----C----------------------------------------------------------CAGCCATTGTTCCATC
droSec1 super_8:332193-332322 + CCACG-----------------------------------------------TCCGGAA-----CCGAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTTA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAG-----C----------------------------------------------------------CAGCCATTGTTCCATC
droYak2 chrX:16646312-16646441 + CCATG-----------------------------------------------TCGCGAA-----CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTTA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAA-----C----------------------------------------------------------CAGCCATCGTCCCATA
droEre2 scaffold_4690:8350125-8350254 + CCACG-----------------------------------------------TCGCGAA-----CCAAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTTA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAA-----C----------------------------------------------------------CAGCCATCGTCCCACA
droAna3 scaffold_13335:1603991-1604112 - GC--G------------------------------------------------------------TTAACGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTTA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACCAATCAACTGACCA--C-------------------------------------------------CAG----------ATC
dp4 chrXL_group3a:1970441-1970623 - ATATG-----------------------------------------------T---GATTTAGCTCGATCGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGATTTA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATATTAGCATCAAA---ACTAAACAAACCAAAAAGGAAGTTGAACGCCTAATGCAATCGATGAGTGTTGGGTTGCTTCAG------TT---TC
droPer1 super_11:2708510-2708698 + ATATG-----------------------------------------------T---GATTTAGCTCGATCGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGATTTA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATATTAGCATCAAA---ACTAAACAAACAAAAAAGGAAGTTGAACGCCTAATGCAATCGATGAGTGTTGGGTTGCTTCAGT-TTCATTCCA--
droWil1 scaffold_181096:12033222-12033334 + CAATC-----------------------------------------------GCAAAAG-----CATAACGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTTA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCAGAAAACGACCAG--------------------------------------------------------------------------------
droVir3 scaffold_12928:1257190-1257317 - T---A-----------------------------------------------TATTTAA-----ACGAGCGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTCA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGACCAGAGAAACAGCGAAT-ATT----------------------------------------------------------TAACTATTTTTCC---
droMoj3 scaffold_6473:13732313-13732476 + CCACATATACAGAGCATATATGTATATGCATATATCATACAAGTATATAGAATCCAGATCCATTGGGAACGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTCA--AGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGATGCCAGAGAAGCAACA---------------------------------------------------------------------------------
droGri2 scaffold_15203:8453543-8453644 + ----------------------------------------------------------------------GGAGCTTATTGGAGCTGCTGGCCACTGCACAAGATTAGATTCAAAAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGACCAGATA----ACAT-----C----------------------------------------------------------AAGCCAT---------

dme-mir-219 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:17308091-17308220 + AAATAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATA-TTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCA
droSim1 chr3L:16646167-16646296 + AAATAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATA-TTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCA
droSec1 super_0:9359464-9359593 + AAATAAATATTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATA-TTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCA
droYak2 chr3L:16762572-16762701 - AAATAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATA-TTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCA
droEre2 scaffold_4784:16541302-16541431 - AAATAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATA-TTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA--TCA
droAna3 scaffold_13337:8265335-8265463 + CAAAATAT-TTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAAT-TCAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAACGAAGAGAACCAT--TTC
dp4 chrXR_group6:9338098-9338227 - ATCAAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATA-TCCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCAGCAACCAAA--ATC
droPer1 super_35:387455-387584 + ATCAAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATA-TCCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCATCAACCAAA--ATC
droWil1 scaffold_180955:2086476-2086593 + A---AAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATT-TCAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATAAGAATACA---------CCCAA--TAA
droVir3 scaffold_13049:5991414-5991542 - GTATAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATT-TCAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATGAGAATCCAACCCA-CAACCAAA--CAA
droMoj3 scaffold_6680:4316890-4317021 - AAACATATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTTTTAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATCCAACACAAA-GCCAAAATATA
droGri2 scaffold_15110:13121815-13121944 + TAACAAACATTTGGTGAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATT-TCAAAAACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATACAACACAAAAATCAAA--ACA

dme-mir-2279 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2RHet:1322818-1322960 - TCCGATGACCCATGGCG----G--GAGAGGATTATGAAAGACAATTTGAAATTAAATATCTGTGT-GTGAAATTATT--------------TAAAAGATTAATTTCACGCGAAGATATTTAT----TTTTACATTTGTCCCTATAATAACCGGGGT----------------------------------------G---------------CCA---ACATACAT
droSim1 chr2R:265657-265782 + AGGC------------------A--------------------ATTTTCAATTAAATATCTGTGT-GTGGAATTATTAAAAACAATGAGTTCAAAGGTTTAGTTTCACGTAAAGATATTTATTTTG-TTTAAATTT-TCCCTAGAATAACCAGTAT----------------------------------------G---------------CCG---ACATAAA-
droSec1 super_55:122657-122779 + AAGT------------------A-------------------AACTTAAAATTATAAATATGTGT-GTGAAATTAATAAA--CGGTAAGTTCGAAAGTTTAGTTTCACGCGAAAGTATTTAT----TTTTACATTTGTCCATAGAATAACCGGGGG----------------------------------------G---------------CCA---ACATAAA-
droYak2 chr2h_random:1837227-1837349 - AAGA------------------C-------------------AACTTAAATTTTTATATCTGTGT-GGGAAATTAAGAAA--CAGTGAGTTCGAAAATTTAGTTTCGTGTAAAGTTATTTAT----TTCTGCATTTGTCCCTAGAATAACCGAGGT----------------------------------------C---------------CCA---ACATAAA-
droEre2 scaffold_4845:21278391-21278511 + CTCCATAACTCAACTT-ATCTT--AATCGGATTTTGAAGTGGCA---TACCT-CTAAATGTTTGTGGTGCAATTATC--------------TAAAAAACTGCATTCAAATTTAAAAATTTATTTTT-TTTACATTTTTTTGTA-----------------------------------------------------------------------------------
droAna3 scaffold_13334:5190-5293 + AAAA------------------AA-------TTAGTAAAAAAAATAATAAATAAAAAAAAATATG-GTGGGATTTTT--------------TAAAAGATATTTTTTATATGGCAATTGGT----------------------------------------------------------------AGTTAAATATTAG---------------TCT---TTTTAAGA
dp4 Unknown_group_37:8363-8450 + GGCAATGAGG--------------------------------------------------------------------------------TAGGAGGGACAATTTTGTAT-----------------------------TCTATAATTATCGTTAGACCTACGCAAAGGATACATTTTACTGCGGG----------T---------------TGT---ATATTTT-
droPer1 super_5473:1216-1318 + TATA------------------C----------------------------------GTGTGTAA-GTGGAACTATG--------------CAGGGGAATGATTTCACATGAAGAAAGTCGATTCG-CCTGTACC------TATTGCATTCC-TA-----------------------------AGCTGAGGTTT-A---------------AGC---TTTAACAT
droWil1 scaffold_180772:5217896-5218034 + GCCGTTGACCAGTGGCG----G--CG----------------CCAAAGTGC--ACATATTCTTGT-CAGAGTTAGCTGGATAGTATGTTCCTGAAAATTCAATTA-AAATTGAA-----------------------------AGAGGACTTG--------------------------------TTGCAATGAATTTTTTTTTAATATTTGTCTAGATTTCGACC
droVir3 scaffold_291:1622-1745 - AAAG------------------AA-------TCATTAGATAAATCTTTAAAATATAGATTTTTTT-TTACCATATTT--------------GTAATGATTTTTGGATTGCGAAATTTTTTAT----TTAAATTGTTAATTATATAATATATTAAAT----------------------------------------A---------------TTT---ATATATAT
droMoj3 scaffold_6473:7010400-7010528 + AAAGACAAAAAAAAAT-AAAAT--AA----------------AAAAAATAAACAAACAAAAGTGT-GTAA---------------AGAGTGCAATGCCAACAAATCATACGTAGATTTCTAT----ATTTACATATGTACATAAATATATATATGT----------------------------------------A---------------TGC---ACATACAT
droGri2 scaffold_14906:12727535-12727642 + TGCC------------------GAGAAGGG------------AAAACGAGAATACAATTTTGTTA-TATTATTTAATTTA--TCTTA-TCTTG------------------------------------TCCTTTTATTTGAAAGATAATTTGA------------------------------ATTTGAATAAATT---------------TAT---ATTTGTAT

dme-mir-2280 three_prime_UTR Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:1831670-1831814 - TGGAGAAGAGTGATATCGTTTAAGATGC---------TGTGAATATCCCGTTTTCTTAGCTTGGCAATAAAAT-ATTA------------------------------TTCACAGAAACTAGTAATTTACTT-----------CCAAGCTAACTGAAGGGGAT-ATTCAGTGCAACCACG--GACTAAAAATGCGTT-TG
droSim1 chr2L:1818710-1818856 - CGGAGCAGAGTGATATCGTTTGAGATGC---------TGTGAATATCCCGTTTTCTTAGCTTGGCAATAAAAT-ATTA------------------------------TTCACAGAAACTAGTAATTTACTT-----------CCAAGCTAACTGAAGGGGATTATTCAGTGCAACATCG--GACTAAAAATGCTTTTTG
droSec1 super_14:1778365-1778510 - CGGAGCAAAGTGATATCGTTTGAAATGC---------TGTGAATATCCCGTTTTCTTTGCTTGGCAATAAAAT-ATTA------------------------------TTCACAGAAACTAGTAACTTACTT-----------CCAAGCTAACTGAAGGGGAT-ATTCAGTGCAACCACG--GACTAAAAATGCTTTTTG
droYak2 chr2L:1804987-1805119 - CGGAGCAAACTGATGTCGTTTAGGATGC---------TGTGAATATCCCATTTTGTTAGCTTGGCAATAAAAT-ATTG------------------------------TTGATTGAAACTAGTAATTTACTT-----------CCAAGCTAACTGAAGTGGAT-ATTC--TA------------CAACAAATGGGTT-TT
droEre2 scaffold_4929:1878584-1878709 - CGGTG-----TGATTCTGCTTAAGGTGC---------TGTGAATATCCCATTTTCTTAGCTTGGCAATAAAAT-ATTA------------------------------TTCATCGA-ACTAGTAATTTAATT-----------CCAAGCCAACTAAAGGGGAT-ATTCACTG---------------CAAATGCATT-TG
droAna3 scaffold_12916:15757494-15757644 + CGTAGAAGCTT-AC-----TAGTTC--------------------------------TGTTTGGTAATAAAGT-TATTCTTTTTTATCTCAAAATGACTCACGTTTTTTTTTTCGA-ATCATTAAATAACATTTATATTTTCCCTAAGC-------CCTGAAT-ACTTATTATAAAAAAGACGATTATAAAAGTATA-TG
dp4 chr4_group3:8561836-8561913 - TGTTGTGGACTTAT-----CGGAGGAACTTGGCGAATTTTGATTATATTTTGATGCCATTTTT---------------------------------------------------------------------------------------ATCTGAAT-----------------------------AAAATGTTCT-TT
droPer1 super_1:10015828-10015916 - TGTTGTGGACTTAT-----CGGAGGAACTTGGCGAATTTTGATTATATTTAGATTCCATTTTT---------------------------------------------------------------------------------------ATCTGAATAAAAT-GTTC--TT---------------TAGTTACGTT-GA
droWil1 scaffold_180708:11841716-11841868 + TGCAGATGCCACAT-----CGGAATTGTGAAGGGAAAATGGGTTATTTAGTTGCGTTAGTTTAACGAGGAATGAAGGG------------------------------TCCGTTGTATTTAATTACTTTTTT----GGTAC--ATTAGTTAATAAAAGGAAAC-AATTAATCAATTAA----CATTATAAACTCGTT-TT
droVir3 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

dme-mir-2281 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:10222106-10222238 - TCCAGTG-------------------------------------------------------------------------CATCCTACGGATGTCGAGCAGTACACGTA---TTATCTGCAG------CTGCAGATGCAAATGTATATGTATCTGTATCTG------TATCT--GCAGTAT-TGC-----AGTA-------TCGCTGCTTTATTCATATCCATG-------AGACGCGTCGCG
droSim1 chr3R:11233896-11234028 + GCCAGTG-------------------------------------------------------------------------CATCCTACGGATGTCGAGCAGTACTCGTA---TTATCTGCAG------CTGCAGATGCAAATGTATATGTATCTGTATCTG------TATCT--GCAGTAT-TGC-----AGTA-------TCGCTGCTTTATTCGTATCCATG-------TGACGCGTCGCG
droSec1 super_0:11818438-11818570 + GCCAGTG-------------------------------------------------------------------------CATCCTACGGATGTCGAGCAGTACTCGTA---TTATCTGCAG------CTGCAGATGCAAATGTATATGTATCTGTATCTG------TATCT--GCAGTAT-TGC-----AGTA-------TCGTTGCTTTATTCGTATCCATG-------TGACGCGTCGCG
droYak2 chr3R:16218838-16218961 + TCCAGTG-------------------------------------------------------------------------CATCCTACGGATGCCGAGCTGC------G---TTATCTGCAG------CTGCAGATGCAAATGTATCTGTATCTT--TCAG------TAT-T--GCAATGT-TGC-----AGTA-------TCTTTGCTTTATTCGTATCCGTG-------TGACGCGTCGCG
droEre2 scaffold_4770:9756449-9756546 - TCCAGTG-------------------------------------------------------------------------CATCCTACGGATGCCGAGCAT----C--G---TTATCTGCAG------CTGCAGATGCAAATGTA------------TCTG------TATCT--GCAGTAC-GGC-----------------------------TGTATCCGTG-------TGACGCGGCGCG
droAna3 scaffold_13117:2846333-2846460 - GTA----------------------------------------------------------------------------------------TCTCGAGATGCATCTGTAAGAGTATCTGCAT------CTGCAAATGTATCTGTATCTGTATCTGTATCTG------TATCT--GTATCTG-TGC-----AAGACTTGCCACCTCTCCTTTTCTCCTTTTCCTG-------AGCAAATGTCGC
dp4 chrXR_group8:8158458-8158593 + GCTAGTG-------------------------------------------------------------------------CCCACTACTGCCTTTGGCATGTATCTGTATCTGTACCCGTATCCGTATCCGTATCCGTTACTGTATCTGTATCTGTATCTG------TAGCT--GCTCTGAATGC-----AGTA-------TATA---TTTCATCAAATTTTTG-------TA----CTCGCA
droPer1 super_0:4124990-4125137 + GTAGGGGATCAGGCATGGCCAGGGGCAGCGGCAACGGCAGGGGCAGGGGCAGGGGCAGCTTTTCCAGGCT-------GTGCATCCTACGGATGGCAGGCTGTAC----------------------------------AACCGTATCGGCAGCCGTATCGG------TATCG--G---------------------------------------TGTATCTGTG-------TGACGCGTCGCG
droWil1 scaffold_181089:10073219-10073346 + CCTGGTAGAGAACGT-----------------------TGGGG--GAGGGGGGGGTTAGTTTTCCAGGCTCGCTGCAAAACATCCTACGATGTGAAAATTGT------G---A---------------------------AGG------------CTACTGAAA--GCG-GT--GCAATGC-GAG-----------------------------GAGAGCGACG-------CAATGCGACGCG
droVir3 scaffold_12928:2113057-2113188 + GTATCTATATCTGTA----------------------------------------------------------------------TATG------TATCTGT------ATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTG------TATCT--GTAT------C-----TATAT------TTGCTT----CTTTAAATCCGCCTCTTTCGAGACATTTATCC
droMoj3 scaffold_6654:2537235-2537365 + TTCAGTGAATCTGTATCTGTATCTGTATCTGTATCTG----------------------------------------------------------------------------TATCTGTAT------CTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCG--TATCTGT-ATC-----------------TGTATCTGTATCTGTATCTG----------TATTTGTATCT
droGri2 scaffold_14830:2155779-2155908 - GCGA-TG-------------------------------------------------------------------------TATCT--CGTATCTCGGCGAGTACGTCGC---------GCAT------CCGTATCTGCAAATGTATCTCTATCTATAGCTG------TATCTGAGCAATGTATGTAGTATAGTA-------TCTGTTGTT--GGGGTTTTCATA-------TTGCTTGTGCTG

dme-mir-2282 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:3412130-3412266 - TGGGGCAGTGGAGCT-----G-----------------------------------------------------CCTGCAT---AACGC---------TGTGGCTTTCCGCTTCTATTTTTCGTTCACTGCCTTGTGC----TTCGTT--------------------------------------------------------------------------GGAAAATCGGTGAGCTAAAAATAGAATTCGGTTGCCACGCTTCAAGGGAAATGAGGAAAATTA
droSim1 zdo07f06.g1:327-468 + TGGGGCAGTGGAGCT-----G-----------------------------------------------------CCTGCAT---AAGGC---------TGTGGCTTTCCGCTTCTATTTTTCGTTCACTGCCTTGTGCTTGCTTCGTT--------------------------------------------------------------------------GGAAAATCGGTGAGCTAAAAATAGATTTCGGTTGCCACGCTTCAAGGGAAATGAGGAAAATTA
droSec1 super_2:3404661-3404801 - TGGGGCAGTGGAGCT-----G-----------------------------------------------------CCTGCAT---AAGGC---------TGTGGCTTTCCGCTTCTATTTTTCGTTCACTGCCTTGTGCTTGCTTCGTT--------------------------------------------------------------------------GGAAAAGCGGTGAGCTAAAAATAGATTTCGGTTGCCACGCTTCAAGGGAAATGAGGAAAATTA
droYak2 chr3L:3959855-3959989 - TGGGGCAGTGGGGCT-----G-----------------------------------------------------CAT--AT---AAGGC---------TGTGGCTTTCCGCTTCTATTTTGTGCTCACTGTCTTGTGC----GGCGTT--------------------------------------------------------------------------GGAAAATCGGTGAGCTAAAAATAGATTTCGGTTGCCACGCTTCGTGGAAAATGAGGAAAATTA
droEre2 scaffold_4784:6102142-6102274 - TGGGGCAGTGGAGCT-----G---------------------------------------------------------CAT---AAGGC---------TGTGGCTTTCCGCTTCTATTTTGTGTTCACTGTCCTGCGT----TTCGTT--------------------------------------------------------------------------GGAAAATCGGTGAGCCAAAAATAGATTTCGGTTGCCACGCTTCGAGGAAAATGCGGAAAATTA
droAna3 scaffold_13337:10031066-10031241 + TGGGGGCAGGTGGTG-----GCAGGAGGTGGCCGGAGGTGGTGGTAGGTGGGTGGGGGTGGTGTATGTAGGGGGCCTGTA------------------TGTGGCTTTCCGCTTCTACC--------ATTTTTTTTTGT-------------------------------------------------------TG----------------GAGGGTTCAGTGGAAATTCGGCGAGCTAAAAATATAATTCGGTTGCCACGCTTC---GGAAA----GAGAATTA
dp4 chrXR_group8:5510827-5511013 - TGTGTGTGTGTGTCT-----GT-----------------------GTGTGTGTGTGTGT-GTGTGTGTGT----GTGGCAGGGTGACAGCACTCTCTCTAAGGCTTTCCGCTTTTCGT------TCTCTTTT---TGT-TG-T-TGTTGTTCTTTCTTTCGTTTTGGTGGAAATTTTC----------GTTGTATCTAAAAATAGACTTTTTGGGGTTCAAAGGAAATTT-------------------------------------------TGTGGGACAAAA
droPer1 super_7263:1394-1409 + TACGGGTGTGAGACT-----G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 scaffold_180955:1135974-1136099 - TATGGCGATATTTTGTAGGTT-----------------------------------------------------TTGGC-A---ATGGT---------TGTGGCTTTCCGCTTCTATTCAGT----------------------CGCA------------------CGAAAAATTTTCTCGGTTTTTTCCCAT-----------------------------------------GTCTAAAAATAGATTT------ACACCC---AAAGTA---GAAAAACATAA
droVir3 scaffold_13049:19660195-19660299 + G------------------------------------------------------------------------------------------------------TTCTGCGCTAGCTTGTTCGGTTTGGTAACATGAGC----TTCATT--------------------------------------------------------------------------AGTGTATGCAATAATGGCAAACATTTTTTGCCTGCCAGGCCTCGGCGAGGACGATGACGACGA
droMoj3 scaffold_6496:15371578-15371721 + TGCAACATTGATGAA-----A-----------------------------------------------------TATGCATAATGAAAATGTGCCCTCA-GAGTTATCCACG------------------------------------------------------------ATTTTTCTACTTTTTTTTTATACCCTGAAC---------CCATTTTCAATGGGAAATCAGGGTATA------ATGGTTTTGTTGAAATGTATG---TAACA----GGGAGAAG
droGri2 scaffold_15203:7704730-7704834 + CAGAATAATAGAATG-----T-----------------------------------------------------ACTCACT---TCAGC---------TATGGCATACAGATTTGCTTTATT-TGCTTTTCGTTGTAC-------------------------------------------------------------------------------------------------------------TTTCTGTTTTCTCAATGTACATGAAAAAGACTGAATTT

dme-mir-2283 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:5343231-5343336 + GAAAACTCACTCCTGAGCTGCTCCGAAAATATCATGAATA-CG----------ACAATTATGTGCACATCATTTAGTATACGTGATATTTTAGGAGCAGCTAAATTATATTTAAAGT
droSim1 wcy63a10.b1:18-120 - A---------------GTTGTTCCGAAAAAATCAATTTTAATGACAGGATGGGCAGATAATTGGGACATCATGTTGTATACGTAATATTTTAGGAGCAGCTCAATTATATTTAAAGT
droSec1 super_0:16553595-16553710 - GACAACTCACTCTTGAGCTGCTCCTAAAATATCACGTATA-CGACATGATGTCCCAATTACATGCACATCCTGTCGTATACGTGATATTTTAGGAGCAGCTCAATTATATTTAAAGT
droYak2 chr3R:9394463-9394539 + GGCAACCCAC--------------------------TCTAAT--------------GTAATTGACACATCATGTCGTATACGTGATATTTTGGGAGCAACGCAATTATATTTAAAGT
droEre2 scaffold_4770:16257712-16257788 - GGCAACTCAC--------------------------TCTAAT--------------ATAATTGTCACATAATGTCGTATACGTGATATTTGAGGAGCAAGTCAATTATATTTAAAGT
droAna3 Unknown ---------------------------------------------------------------------------------------------------------------------
dp4 Unknown ---------------------------------------------------------------------------------------------------------------------
droPer1 Unknown ---------------------------------------------------------------------------------------------------------------------
droWil1 Unknown ---------------------------------------------------------------------------------------------------------------------
droVir3 Unknown ---------------------------------------------------------------------------------------------------------------------
droMoj3 Unknown ---------------------------------------------------------------------------------------------------------------------
droGri2 Unknown ---------------------------------------------------------------------------------------------------------------------

dme-mir-2490 antisense_to_intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2LHet:27321-27425 + ACAATCGTACGTTCTGAGCGAGTTGAAGCGATAAAGCAGGTTGCAAACTGCTCTCTCGCTTTGCTCTT---------------------------------------------------------ACTTTATCGCTTAAACTCGCA-----ACTCGCTTC----------GCTCTCA
droSim1 chr4:281112-281214 + AAAATCGTACGCTCTGAGCGAGTTGAAGCAATAAAGCAGGTTGCAAACTGCTCTTTCGCTTTGCTCTC---------------------------------------------------------GCTATATCGCTTGAGCTCGCA-----ACTCGCTTC----------GCT--CA
droSec1 super_30:85009-85111 + AAAATCGTACGCTCTGAGCGAGTTGAAGCAATAAAGCAGGTTGCAAACTGCTCTTTCGCTTTGCTCTC---------------------------------------------------------GCTATATCGCTTGAGCTCGCA-----ACTCGCTTC----------GCT--CA
droYak2 chrU:9061077-9061181 + ACAATCGTACGCTCTGAGCGAGTTGAAGCGATAAAGCAGGTTGCAAACTGCTCTCTCGCTTTGCTCTC---------------------------------------------------------GCTTTATCGCTTGAGCTCGCT-----ACTCGCCTC----------GCTCTCA
droEre2 scaffold_4784:23192819-23192904 - ACTATCAGACGCTCTGAGCGAGTTGCAGCGATAATGCAGGTTGCAAACTGTTCTCT----------------------------------------------------------------------------CGCTTGAGCTCGCA-----ACTCGTTTC----------GCTCTCA
droAna3 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp4 chr4_group4:3101286-3101457 + AGCAT---GAGC-GTCCACGAGATCAAGCGATAAGACATTTGCAAAGCTACTCTCTTGCTTCGCTTGCACTCGTTGCTGTCTTCGCTATAACTTGTTTCCCGCTCTTCACTGTAAATCGTTTTGCAC-TCTTCGCTCAAACTAGCCGCGCTGCTCTCTTCGCTTATCTTTGCTCTCA
droPer1 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 scaffold_181143:687820-687924 + ACACACGTATAACAGCAGCTGGATGAAGCGATAAAGCGA-TTCAGAATCGCTTTCTCGCAACTCGCTT------------------------------C--------------------------AACTTGTCGCTTTGGCTCTCT-----TCTCGCTTC----------GCTTGCA
droVir3 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6498:432956-433055 + AACAC---ACTTTAT-CATGCGATTAAGCGAGAAAGCGA-TTCAGGAATGCTTTCTCGCAACTCGCTT---------------------------------------------------------AACTTCTCGCTTTGGGTCTCT-----TCTCGCTTC----------GCTTGCA
droGri2 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

dme-mir-2491 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:22235261-22235434 - ACTAAATGAC---A--CCACCGCGAACCACT---T--TGTGCC-----------------------------------------------------GCTGTTGCCTTTG----CA--------GTTGCTGTTTTCCATGTT---GCTAC-------------------------------------------------------------------------------TG-----------CGGCCAATTGTTGCGCATCAGCAACATCAACAAC------------------ATCAA--CA---ACAGCAGCAGCAACTGC---AGTAGCAG------C-ACTCGT-------------GATTCACTTTCGA-CT-CAATTCGTCGCTA-
droSim1 chrX:16981360-16981475 - ACTAAATGAC---A--CCACCGCGAACCACT---T--TGTGCC-----------------------------------------------------GC---------------------------------------------TGCTAC-------------------------------------------------------------------------------TG-----------CGGCCACTTGTGGCGCATCAGCAACATCAGCAAC------------------ATCGT-GCA---ACATC---------------------G------------------------------TTCAC-TTCGA-CT-CAGTTCGTCGTTA-
droSec1 super_39:188007-188112 - ACTAAATAAC---T--CCACCGCGAACCACT---T--TGTGCC-----------------------------------------------------GC---------------------------------------------TGCTAC-------------------------------------------------------------------------------TG-----------CGGCCACTTGTGGCGCATCAGCAACATCAGCAAC------------------ATCG-----------------------------------------------------------------TTCAC-TTCGA-CT-CAATTCGTCGTTA-
droYak2 chrX:21599490-21599638 - ACTAAATGGC---A--CCACCGCGAACCACT---T--TGTGTC-----------------------------------------------------GCTGTTGCCTCTG----CT--------GTTGCTGCTTTGCATGTT---GCTAC-------------------------------------------------------------------------------TG-----------TGACCACTTGTTGCGCATCAGCAACAGCAACGAC------------------A--------------------------GC---AACAGCAG------C-ACTTGT-------------GCTTCAC-TTCGA-CT-CGATT---CGTTA-
droEre2 scaffold_4690:18518767-18518923 - ACTAAATGAC---A--CCACCGCGAACCACT---T--TGTGTC-----------------------------------------------------GCTGTTGCC--TT----CT--------GTTGCTGCTTTGT-TGTT---GCTAC-------------------------------------------------------------------------------TG-----------CGACCACTTGTTGCGCATCAGCAACATCGACGAC------------------AGCAAAGCA---------------ACAGC---AGCAGCAG------C-ACTTGT-------------GCTTCAC-TTCTA-CT-CGATT---CGTTA-
droAna3 scaffold_13417:1531274-1531445 - ATCATT-----------------------CT---G--GATGAT-----------------------------------------------------GCTGTTGCAGCTT----CT--------CTTGCTTTTCTG----------C---------------CACATGGAGACGACA-----------------CCAAAAACAATAAC---------------------AACAACAATGGTACAAC---------AACAGTAGCAACAACAGCAAC------------------A-----------GCAACAGCAACAGTAGC---AGTAGCAGCAACGGT------G-------------GCAACACTTTCAAATT-CATTT--TCGAAAT
dp4 chrXL_group1e:3403111-3403272 - ACAGAGTGGC---ATGCAACTGCCAGCCACG---C--CCTCGA-----------------------------------------------------GC------------------------------AGCTCCG----------C---------------CTCAGGGAACT--CGCCGGATCTGTTATCCTTCCAAATGGAGCAAC---------------------TG-----------CAGCAGCAGC---AACAGCAGCAGCAGCAGCAACATCACTT---------------G--CAACAGCAGCAGCAGCAACACC---AGCAGCAG------C-A-------------------------------------------------
droPer1 super_20:731421-731582 - ATCGC------------------CAA----T---C--TG-------------------------------------------------------------TTGCGGCAGCAGTCCCAGTCCCAGTCGC---------------AGT---CGCAGT---------------------------------------------------------------------------------------CACAGCCCCTGCAGCAGCAGCAGCAGCAGCAACATCCTCAGCAACAGCAGCA-----------GCAGCAGCAACATCCTC---AGCAGCAGCAGCGGC-GCGACA-------------G------CTCCGA-CAGCAATTGCTCGCTG-
droWil1 scaffold_181096:4169006-4169179 - ACAACA--GCAACA--ACAAAGAGAGCAACAAAGTTGTATG-----------------------------------------------------------TTGCCTTTGCCTTCT-----------------TCGTGTGCTGCTGCTGCTGCTGT-------------------------------------------------------------------------CG-----------ATCGGGCTTTTTGGGCAGCAGAAACATCAGCAAC------------------ATTGC--CA---GCGACAGCAACAACAGC---AGCAGCAG------CAGCTTGC-------------AATTTTCTTTTTG-CT-C------TTGCTAT
droVir3 scaffold_13324:2891413-2891591 + ACAAAGCAAC---A--ACAACCACAATCACA---G--C-------------------------------------AGCAGCGCCAGCAGCAACA-----------------------------ATTGCAGTT-------------------------------------------GCCG-----------------------GCAAC---------------------TG-----------CAGCAACGGAAGCAGCAGCAGCAACAACAACAAC------------------AACAA--CAACAACAACAGCAACAACTGC---AGCAGCAG------C-ATTCGCATTGGATTAAACAG------CTTCGA-CTGCTATGCATTGGTA-
droMoj3 scaffold_6680:19782481-19782647 + GTAACT---------------------CAAT---T--TGTTTGGCGTTTGCATCTTAAATTCTCGTAAGCATGCCATGTGTGCCATCCTGCACAAAGC---------------------------TGCTGCTTTGC-TT-------------------------------------------------------------------------------------------------------------CGATTCAGCACCAGCAACAACAACAAC------------------AACAA--CA---ACAACAGCAGCAGCAGCAGCAACAGCAG------C--------------------AGTGGACATCCAA-CT-GAAT----------
droGri2 scaffold_15245:7434254-7434426 - ACCAGATGAT---A--CCCACAAGCGTCACG--------------------------------------------------------------------------------------AACTCACCGCC---------------AGC---CGCTGGCTTGGCC-------------------------------CAAAATGGAGCAGCTGCTGTTGTTGTTGTTGTTGGTG-----------GTGGCAGTTCTGCTGCAGCAGCAGCAGCAGCAGC------------------ATCAA--CA---GCAGCAGTGGCAGCA-C---AGCAGCAG-----------------------------AGCAATTACAA-TT-CAATT---------

dme-mir-2492 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:11441440-11441545 + ACAAAATTCACACTCGAAT-TTTTTTGGGATCTCTTTATAAAGCGTTTATTA---TTTATTTATTATGTTTTGTCGAGAGCTTTCAAAAA-ATT-CAGAAGACAACAACGCA
droSim1 chrX_random:3203326-3203430 + ACAAAATTCACACTCGAAT-TTTT-TGGGATCTCTTTATAAAGCGTTTATTATTATTTATTTATTATGTTTTGTCGAGAGCTTTCAAAAA-AGT-CAGAAG---ACAACGCA
droSec1 super_36:155641-155745 + ATAAAATTCACTCTCGAAT-TTTT-TGGGATCTCTTTATAAAGCATTTATTATTATTTATTTATTATGTTTTGTCGAGAGCTTTCAAAAA-AGC-CAGAAG---ACAACGCA
droYak2 chrX:10720999-10721105 - ACAAAATTCACACTCGAAT-TTTTTGGCAATCTGTTTATAAAGCGTTTATTA---TTTATTTATTATGTTTTGTCGAGAGCTTTCAAAAATACA-ACAAAATAGGAAAAAAA
droEre2 scaffold_4690:3720646-3720750 - ACAAAATTCACACTCGAATTTT---GGGTATCTCTTTATAAAGCGTTTATTA---TTTATTTATTATGTTTTGTCGAGAGCTTAAAAAAA-ATATGAAAAGACAACAACCAA
droAna3 scaffold_13047:188962-189053 + ACAAAATTCACACTCGCTT-TT---GGCCAAC--TCCATAAAGCGTTAATTA---TCTG---------GCATTCTGAGAGCCAAAAGCTA-AAT-CAAATTCGATCGGAGCG
dp4 chrXL_group1e:1762210-1762257 + ACAAAATTCACACTCGAAT-TT---GGGGATCGCGTAGCGAGG--------------------------------------------------------GG----GGGGCAA
droPer1 super_18:601670-601716 + ACAAAATTCACACTCGAAT-TT---GGGGATCGCGTAGCAAGGG-------------------------------------------------------------GGGGCAA
droWil1 scaffold_180777:122952-122984 + ATAAACTCAATACACGAAT-TTGGTACTGATTTC------------------------------------------------------------------------------
droVir3 Unknown ----------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:22511787-22511827 + TCC---------------------------------------------------------------------GTCAATCATCTCCTTAAA-ACT-CTAAAGCAAACCAAGCA
droGri2 scaffold_15203:463820-463836 - GTGAAATTCACACTCGA-----------------------------------------------------------------------------------------------

dme-mir-2493 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:10956461-10956596 - TATAA------------TGTGTGTG------------TGC-GCTATTATTAAAACCCCC----------------------------------------AAC----------GCTCACACACACACACA--GCCATGTGCATGG----AGCA-----AAAA-----A-------------CTATGGCCGTGT------------GTATTTGTGCGAGGCGTTGGCGTTCTGACC----AGCA------GAAGAGGAAGATGG
droSim1 chr3R:10501806-10501941 + TATAA------------TGTGTGTG------------TGC-GCTATTATTAAAACCCCC----------------------------------------AAC----------GCTCACACACACACACA--GCCGTGTGCATGG----GGCA-----AAAA-----A-------------CTATGGCCGTGT------------GTATTTGTGCGAGGCGTTGGCGTTCTGACC----AGCA------GAAGAGGAAGATAG
droSec1 super_0:10986595-10986730 + TATAA------------TGTGTGTG------------TGC-GCTATTATTAAAACCCCC----------------------------------------AAC----------GCTCACACACACACACA--GCCGTGTGCATGG----GGCA-----AAAA-----A-------------CTATGGCCGTGT------------GTATTTGTGCGAGGCGTTGGCGTTCTGACC----AGCA------GAAGAGGAAGATAG
droYak2 chr3R:15471091-15471226 + TATAA------------TGTGTGTG------------TGC-GCTATTATTAAAACCCCC----------------------------------------AAC----------GCTCACACACACACAGG--GCCGTGTGCATGG----GGCA-----AAAA-----A-------------CTATGGCCGTGT------------GTATGTGTGCGAGGCGTTGGCGTTCTGACC----AGAA------GAAGAGGAAGATAA
droEre2 scaffold_4770:10485021-10485154 - TATAA------------TGTGTGTG------------TGC-GCTATTATTAAAACCCCC----------------------------------------AAC----------GCTCACACAC--ACAGA--GCCGTGTGCATGG----GGCA-----AAAA-----A-------------CTATGGCCATGT------------GTATGTGTGCGAGGCGTTGGCGTTCTGACC----AGAA------GAAGAGGAAGATAA
droAna3 scaffold_13340:6023187-6023339 - TATAA------------TGTGTGTGTGTGTG--TGTTTGT-GCTATTATTAAAACCCCC----------------------------------------CTC----------GCAAGCACCC-CCCACT--GCCAC-TGCATAG----AGCAAAAAAAAAAAAAAAA-------------CTATAGTGGTGT------------GTG-GCAGGCGAGGCGTTGGCGTTTTGACC----AAAA------GCTGAAGAAGAGGA
dp4 chr2:20937547-20937682 - TATAA------------CGTGTGTGTGAGTG------TGT-GCTATTATTAAACTCCCT---------CCCTAA---------------------------------------CAC----G--CACACA--ACTATGT-TATG----------------TA-----A-------------GTGTGTGTGTGT------------GTGTGTGTGTGAGGCGTTGGCGTTTTGACC----AGAAGCTGAAGAAGAGGAAGAATA
droPer1 super_3:3688114-3688249 - TATAA------------CGTGTGTGTGAGTG------TGT-GCTATTATTAAACTCCCT---------CCCTAA---------------------------------------CAC----G--CATACA--ACTATGT-TGTG----------------TA-----A-------------GTGTGTGTGTGT------------GTGTGTGTGTGAGGCGTTGGCGTTTTGACC----AGAAGCTGAAGAAGAGGAAGAATA
droWil1 scaffold_181130:7306738-7306938 + CAAATGGTATGCGTCTATGTGTATGTGTGTGCCTGTGTGTGGCTATTATTAAAAATCCACACCTCCTACCCCAACCCCCCGTTACATATACACACAACCAATACATCCATACGCCCACACATACACATA--CATGAAAAGAAAA----GGA------AAAAAAAGAA-------------CT------------------------------ATGAGGCGTTGGCGTTCGTTCCGGGCACTA------CAAGAAGAAGAAGA
droVir3 scaffold_13047:7645546-7645687 - CATAT------------TGTACGTG------------TGT-GCTATTATTAAAATGCCA----------------------------------------CAC----------GCACGCACAC--ATAGAGACGGGGGGACACGGACACGGCA-----AAAAGAAAAACTATTCTC--------AGAGTGTGT------------GTGCGCCTACGAGGCGTTGGCGTTTTGGCT----AGAA------GAAGC--------A
droMoj3 scaffold_6540:3604660-3604829 - TATAT------------TGTATGTG------------TGT-GCTATTATTAAAATACCA----------------------------------------CAT----------GCACGCACACACAGAGA--GGCAGAGACACGGACACAGCA-----AAAAGAAAAACTATTTACAGTTGCTGCGACTGTGTGTATATACATATATGCGCCTACGAGGCGTTGGCGTTTCAGCA----AGCG------AGAGAGTGAGAGAG
droGri2 scaffold_15245:14649244-14649349 + AACAA----------------------------------------------------GC----------------------------------------AAC----------ACACACACACACACACA--CACACACGCA-------GACA-----AAGA-----A-------------ACACACACTCAC------------ATACATC-TTGATGTGTTCATATTTATGCCA---AGTC------AAACTCAAAAGCTT

dme-mir-2495 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:5068555-5068699 + CGTATGTAT---------------------TATACATGTATGATCACATTGGCTTGTGGGCGTGG--CAC-TTCAATTGGGCTGACTTTGCCTGGCTGGAAAAGCGGCA-CCTAATTGAAATGC-CCGC---CGATCAGT-GCTCGATTACGAT------CGACACAAGCGACATT---TTCGT-----------------
droSim1 zds89d09.b1:77-211 + CATACGTACAT----------------------ACATGTATGATC-CATTGGCTTGTGGGCGCGG--CAC-TTCAATTGGGCTGACTTTGCCTGGCTGGAAAAGCGGCA-CCTAATTGAAATGC-CCGC---CAATC---------------------------------GACATT---TTCGTTTAATTTCGTTTCTAGC
droSec1 super_5:3155468-3155580 + CGTACAT--------------------------ACATGTATGATC-CATTGGCTTGTGGGCGTGG--CAC-TTCGATTGGGCTGACTTTGCCTGGCTGGAAAAGCGGCA-CCTAATTGAAATGC-CCGC---CAATC---------------------------------GACATT---TTCGT-----------------
droYak2 chr2L:10456243-10456376 - TATAC---------------------------------TATAAT--CATTGGCTTGTGGGCGTGG--CAC-TTCAATTGGTCTGACTTTGCCCGACTGGAAAAGCGGCA-CCTAATTGAAATGC-CCGCCA-CAATCAGT-GCTCGATCGTGAT------CGACACAAGCGACATT---TTCGT-----------------
droEre2 scaffold_4929:5148425-5148554 + TTTATG------------------------------------ATC-CATTGGCTTGTGGGCGTGG--CAC-TTCAATTGGTCTGACTTTGCCCGGCTGGAAAAGCGGCA-CCTAATTGAAATGC-CCGC---CAAACAGT-GCTCGACCATGAT------CGGCACAAGCGACATT---TTCGT-----------------
droAna3 scaffold_12916:13706207-13706309 + CATATG-----------------------------------------------TTGTGGGCGTGG--CAC-TTCAATTGGTCTAACTTTCCCGGAATGGTAAAGCAGTCACTTAATTGAAATGC-CCGC---CAATC---------------------------ACGAGCAACATTTTTTTCGT-----------------
dp4 chr4_group4:1588263-1588389 + TGTCTGTGTGCG----------------------------------CATTGGGTTG-GGGCGTGG--CAC-TTCAATTTGGC--GCTTTGCCTGGCTGTAAAAGCTGCA-ACTAATTGAAATGT-CCGC---CAATCAATTAAGCAA---TAAA------CAACATAAGCAACACT---TTCGA-----------------
droPer1 super_10:591769-591895 + TGTCTGTGTGCG----------------------------------CATTGGGTTG-GGGCGTGG--CAC-TTCAATTTGGC--GCTTTGCCTGGCTGTAAAAGCTGCA-ACTAATTGAAATGT-CCGC---CAATCAATTAAGCAA---TAAA------CAACATAAGCAACAAT---TTCAA-----------------
droWil1 scaffold_180703:1359544-1359639 + TTCACAC----------------------------------------ATTCGTTTTTGTCTATGG--TATTTTCAATTTGGCTC-CTTTATCTGGCTGAAAAAGCTGCA-ACTAATTGAAATGC-CCAT---TTAAC-------------------------------------TT---TATAT-----------------
droVir3 scaffold_12963:10059299-10059444 - CGTATGTGTGTGTGTGTGTGTGTCTGTGTCTGTGTTTGTGTGTGTGCTTTTGATTGAGAACGTTT--CAT-TTCAATTTGGC--GCTTTGCCTGGCTGGAAAAGCTGCA-TTTAATTGAAATGC-GCGTCGCTAAT-AA---TTC-------------------------AATAATT--TATTA-----------------
droMoj3 scaffold_6500:1220428-1220559 + TTTGAGT----------------------------------------ATCA-TTTTAGGGCGTGTTCCAT-TTCAATTTGGC--GCTTTGCCTGGCTGGAAAAGCTGCA-TTTAATTGAGATGC-GCGT---CGACATTTTATTCGATTACATTTAGTTTAATTACAAGAAATATT---TAAGC-----------------
droGri2 scaffold_15252:11801593-11801729 + TGTGTGTGTGTG--------CTTCTCTCTCTATCTCTGTATCTCTCTCTCTGGTTGAGGGCGTTC--CAT-TTCAATTTGGCGCTTTTTGTCTGGCTGGAAAAGCTGCACATTAATTGAAATGTCGCGTCGTTAATCAACT--------------------------------AAT---TT-TG-----------------

dme-mir-2496 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:1904318-1904465 + AAGAGCGCAAAATGA--GT--------------------------------GCGCCG----GTGTGCGTGTGTGAGAGGCC--ATCGTAAAAGCCTTGTTTGCGTGCGGAATTTAACTGTTTTCTCGCCGTCTGCGAATTGCG-----------------GGGCACTCACACACGCATATTCAGCCGCA--------CATCT--GGGAAAATGGG
droSim1 chrX:1343126-1343273 + AAGAGCGCGAAATGA--GT--------------------------------GCGCCG----GTGTGCGTGTGTGAGAGGCC--ATCGTAAAAGCCTTGTTTGCGTGTGGAATTTAACTGTTTTCTTGCCGTCTGCGAATTGCG-----------------GGGCACACACACACGCATATTCAGCCGCA--------CATCT--GGGAAAATGGG
droSec1 super_10:1689518-1689665 + AAGAGCGCAAAATGA--TT--------------------------------GCGCCT----GTGTGCGTGTGTGAGAGGCC--ATCGTAAAAGCCTTGTTTGCGTGTGGAATTTAACTGTTTTCTTGCCGTCTGCGAATTGCG-----------------GGGCACTCACACACGCATATTCAGCCGCA--------CATCT--GGGAAAATGGG
droYak2 chrX:6422544-6422691 - AAGAGCGCAAAATGT--GT--------------------------------GCGCCG----GTGTGCGTGTGTGAGAGGCC--ATCGTAAAAGCCTTGTTTGCGTGTGGAATTTAACTGTTTTCTCGCCGTCTGCGAATCGGG-----------------GGGCACTCACACACGCACATACAGCCGCA--------CATCT--GGGAAAATGGG
droEre2 scaffold_4644:1874871-1875018 + AAGAGCGCAAAATGT--GT--------------------------------GCGCCG----GTGTGCGTGTGTGAGAGGCC--ATCGTAAAAGCCTTGTTTGCGTGTGGAATTTAACTGTTTTCTCGCCGTCTGCGAATTGGG-----------------GGGCACTTACACACGCACATACAGCCGCA--------CATCT--GGGAAAATGGG
droAna3 scaffold_12929:1897894-1898023 + AAGGGGGAGAGAGCA--GT--------------------------------TTGCAT----GTGTGCGATTTT-----GTG--GTCATAAAAGCTTTGTTTGCGTGTGGAATTTAACTGTTTTCTAGCCGTCTGCGAATTGGG-----------------GGGGGGGGG-------------GGCCATA--------CAAGC--TGGAAAATAGG
dp4 chrXL_group1a:2576130-2576311 + AAGAGGGAGAGATA-----GAGAGAGAGAATAATGGAGTGCTGGTGTATATGTACCTACATATGTACGTGTGGTTGA-GTA--CCCATAAAAGCCTTGTTTGCGTGCTAGTTTTAACTGTTTTTTCGGTGTTCTTGTGTTGGG-----------------CGGCACACACACCAGCGCCATTGGCTTTT--------CACAGGGCGAGAAGTAAG
droPer1 super_28:1013167-1013344 + AAGAGGGAGAGATA-----GAGAGAGAGAATAATGGAGTGCTGGTGTATATGTACCT----ATGTACGTGTGGTTGA-GTA--CCCATAAAAGCCTTGTTTGCGTGCTAGTTTTAACTGTTTTTTCGGTGTTCTTGTGTTGGG-----------------CGGCACACACACCAGCGCCATTGGCTTTT--------CACAGGGCGAGAAGTAAG
droWil1 scaffold_181096:6994288-6994457 - GAGGCCAAAA-GAGACAGT--------------------------------GCGATA----GAGAG--AGGTAGAGAGAACGTACAGAGAGAG-CTTGTTCTGGTTTGTAACTA-ATTTTCCCCCTCAAATGTAAGCATTTCGAATGCATGTGTGTGTACGTGTAATCACACACGCACACAAATAC-CACGTCATTACGAT---TTCCACATGGC
droVir3 scaffold_12928:6459245-6459266 + G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTA--------TTTCT--GTGCAAGTGTG
droMoj3 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:11679615-11679698 + -----------------------------------------------------------------------------------------------TTGTTTTCGCTTTTCATTT---TGTTTTACGATTAACTGTAAACTGCA-----------------G-----CCGGCCAACCATTTTCGAGCCCA-----------CTGGCAAAGAATGGG

dme-mir-2498 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:16472199-16472340 - A----------------TGTGATATTTTTTTCACATTTGCCAT---------AATCTCCTTAAAATAGT-------AAAGGCTGTTATGCTTATTTTTG-TGTTTTTTACAAAACTGGCATTCCCGTCT--T-ACTTATTTTCAGAAAACTTACACCAAAG-TGCACAGATTGAAAAAA
droSim1 chr2R:15133473-15133625 - AGTAAAAAAGACAAAAATGTGAA------CTTCAAATTGCCAT---------AATCTC---AAAATAGTAAA-----AAGTCTGTTATGCTAATGTTTG-TGTGTTTAACAAACTTGGCATAACCGCTTTTT-ACTTATTTGCAGAAAACTAACCACAAAG-TGCACAGATTGAAAAAA
droSec1 super_1:14026397-14026532 - A----------------TGTGAA------CTTCAAATTGCCAT---------AATCTC---AAACTAGTAAA-----AAGTCTGTTATGCTAATG-TTG-TGTGTTTAACAAACTTGGCACAACCGCTTTTT-ATTTATTTGCAGAAAACTAACCACGAAG-TGCACAGATTGAAAAAA
droYak2 chr2R:12723862-12724011 + TTTG-----------------ATTCTGCATTAGAAATCGCCACCCAACTTTGATTTTTCTAGAAATATT-------TAAGTCTGTTCTGCTTAGATTTG-TGAATTTGACAAAATCTGCACAGCCGGCT--TAATGTATTTTTAGAAACTTAGCACCTTTTGTGTAAAGA---AAAAAC
droEre2 scaffold_4845:10617439-10617588 - TTTG-----------------ATTCTGCTTCTTAAATCGCCACCCAACTTATAGTATTCCAAAAATATT-------TAAGTCTGTTATGCATACTTTTG-TGAGTTTGACAAAATGTGCACAACCGGCT--TACTGTATTTTTAGAAAACAAACACCTTAGTTGTAAAGA---ATAAAC
droAna3 scaffold_13266:4132040-4132139 + AATA-----------------AATAAAC-----AAAATTCTCA---------AATATT---TAAC--GTAAAAACTT--------------AATT-TTGTCGCGATATACAAATTTGGCGC------CA--AAACGTATTTTCATAAAATTTTA--------------------AGCTA
dp4 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

dme-mir-2499 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:19451026-19451151 + CTTTGGGCGTTCGCCTCCTTGCTGT------GGGTGTGGT--------TGCGTGCGTAGACGTCAGCGCAATGCCTTTGTTTGGCGGCATGCG-G---ATGACAT-----------------TCACGTCCGTATCCGCACACACATCCGCATCCATATA-----------------------------TC------
droSim1 chrX:15016847-15016968 + CTTTGGGCGTTCGCCTCCTTGCTGT------GGG--TGGG--------TGCAGGCGTGGACGTCAGCACAATGCCTTTGTTTGGCGGCATGTG-G---ATGACGT-----------------TCATGTCCACATCCGCACACACATCCGCATCCATA-------------------------------TC------
droSec1 super_8:1733318-1733439 + CTTTGGGCGTTCGCCTCCGTGCTGT------GGG--TGGG--------TGCAGGCGTGGACGTCAGCACAATGCCTTTGTTTGGCGGCATGTG-G---ATGACGT-----------------TCATGTCCACATCCGCACACACATCCGCATCCATA-------------------------------TC------
droYak2 chrX:11887438-11887559 - CTTTGGGCGCTCTCCTCCTTGCTGT------GAG--CGGG--------TGCGTGCGTTGACGTCAGCGCAATGCCTTTGTTTGTCGGCATGCG-G---ATGGCGT-----------------ACACGTCCACATCCGCACACACACACGCATCTGTA-------------------------------TC------
droEre2 scaffold_4690:9687367-9687488 + CTTTGGGCGCTCCTTTCCTGGCTGT------GAG--TGGG--------TGCGTGCGTTTATGTCAGCGCAATGCTTTTGTTTGGCGGCATGCG-G---ATGGCAT-----------------ACACGTCCACATCCGCACACACATCCGCATCCGTA-------------------------------TC------
droAna3 scaffold_13417:2469661-2469798 - CGA-----------CTT----CTGTGTGT--GTGTGCGTG--------TGTTGGCGTTGGCGTCAGCGCAATGCCATTGTTTGCCGGCATGCG-G---CTGGCGT-----------------GCACGTCTACATCCGCACCTGCATCCACAT------AGCAGCTGCAACAACAAACACGGCACTCCGTC------
dp4 chrXL_group1e:12520639-12520746 - TTTTTGA-------------GT-----GTGTGTT--TGTATTTATTTATTTTTGTGTGGACTTCACTGCATTGTCATTGATTGGCGGC-----------TGTCGT-----------------GCAGGACAATGT--GAAACATCATTCGACA-CAAA-------------------------------TC------
droPer1 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13042:909712-909778 - A----------------------------------------------------------------------GGCCATTGTT--ATGGCAGGTGGGCAGGTGTCAT-----------------CAATAGCCGCATCC--AGGCACATCCGCATCCACA-------------------------------T-------
droMoj3 scaffold_6328:2902676-2902778 - CTGTGGGCTTTAGGCCAATTGATAT------GGT--CGTG--------T------------------------------------GGCATGAG-G---CAGGTGTCAGCAGGTGGCAGCAATTCGGAACCAT-TGTGTGCCCACATCCGCATTTGCA-A-----------------------------GC------
droGri2 scaffold_15081:2046312-2046418 - TGTTGCA-------------GTTGC------ATT--TGAA--------TGTAGGTGTTGTCATTA-------------TTTTGAGGGCATGCG-G---CAGGTGTCAACG------------CCACGTCCTCATTTGCATCCGCTTCCGCATCCGCA-------------------------------TCCGCTGT

dme-mir-252 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:9289926-9290048 - GTG-------TGCCG------------CCTACTTACC-----------------------------------------------AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGAGTTGCCCAGCAAAA---------GAA
droSim1 chr3R_random:533427-533549 - GTG-------TGCCG------------TCTACTTACC-----------------------------------------------AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGAGTTGCCCAGCAAAA---------GAA
droSec1 super_0:12715202-12715324 + GTG-------TGCCG------------TCTACTTACC-----------------------------------------------AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGAGTTGCCCAGCAAAA---------GAA
droYak2 chr3R:13598006-13598135 - GTGCTAGATGTACGA------------TGTACTTACC-----------------------------------------------AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGAGTTGCCCAGCAAAA---------GAA
droEre2 scaffold_4770:12350666-12350788 + GTG-------CTAGA------------TGTACTTACC-----------------------------------------------AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGAGTTGCCCAGCAAAA---------GAA
droAna3 scaffold_13340:1848657-1848824 - GAG--------------------------TACTTAGCCCCAACCATTGGTAAATATTGATTTTATACTTACATTACTTCCTGCGAAG-TCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGAGTTGTCCAGCAAAATACAAG---GAA
dp4 chr2:16736618-16736739 - T-A-------TCTTG------------TGCATTTTGG-----------------------------------------------CGGTTTGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG-GTGGTCCAACAGTG---------AAA
droPer1 super_0:3659179-3659300 + T-A-------TCTTG------------TGCATTTTGG-----------------------------------------------CGGTTTGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG-GTGGTCCAACAGTG---------AAA
droWil1 scaffold_181130:6363211-6363342 - GAT-------GGATCAATACTTACTTGAAC------------------------------------------------GAAG--CGTATTGCTTTACTAAGTACTAGTGCCGCAGGAGTTTGGTTCGTGTCCGTAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGACGACTTTACCTACTTAA---------AAA
droVir3 scaffold_12855:2861518-2861626 + T----------------------------------------------------------------------------------------TGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTTGTGTCCGCAATGCCTCCTGCTGCCCAAGTGCTTATTAAAGCGACTAGTTTTCCACCAGCA-ACAATTAGAAA
droMoj3 scaffold_6540:10349255-10349360 - T----------------------------------------------------------------------------------------TGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGGTTGTGTCCGCAATGCCTCCTGCTGCCCAAGTGCTTATCAAAGCGACGAGTTTTTCAACAGCA-GCAAT---TAA
droGri2 scaffold_14906:3807816-3807948 - TTG-------TGGCA----CTTACTTGAGC----------------------------------------------TTGATG--CGTATTGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTTGTGTCCGCAATGCCTCCTGCTGCCCAAGTGCTTATTAAGGCGACGAATTTTCCAACAATGTGC------GAG

dme-mir-263a intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:11953395-11953518 - CCATCTAAT----------------------------------------GGT--ATATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTTA--TACAACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAAACAT---------CCAAAATGAA
droSim1 chr2L:11760450-11760573 - CCATCTAAT----------------------------------------GGT--ATATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTTA--TACAACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAAACAT---------CCAAAATGAA
droSec1 super_16:152684-152807 - CCTTCTAAT----------------------------------------GGT--ATATAGATCTCGACACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTTA--TACAACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAAACAT---------CCAAAGTGAA
droYak2 chr2L:8374818-8374940 - CCAGCTGCT----------------------------------------GGT--ATATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTACTTTTTA--TACAACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAAACAT---------CCAA-ATGAA
droEre2 scaffold_4929:13456433-13456555 + CCATCTGAT----------------------------------------GGT--GTATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTACTTTTGA--TACAACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAAACAT---------CCGA-ATGAA
droAna3 scaffold_12943:2289700-2289819 + ACA----------------------------------------------AGT--TTCTCCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTCTA--TACAACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGATTAAAACATCAAA------A-AAGTGA-
dp4 chr4_group3:7322788-7322905 + ACTCATAAG----------------------------------------TGT--ATCCACATCCCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTT-TTTCAA--TACAACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGACT----CAT---------CTCA-ATCAA
droPer1 super_1:8768281-8768398 + ACTCATAAG----------------------------------------TGT--ATCCACATCCCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTT-TTTCAA--TACAACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGACT----CAT---------CTCA-ATCAA
droWil1 scaffold_180708:2657721-2657853 - CTTTCGATT----------------------------------------GG---TTCTGCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTTTTATTTAACAC-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGATTTAAGCATACAGAACATCCGACATCAA
droVir3 scaffold_12963:13235091-13235216 + CTTAATGTT----------------------------------------GCTTGCTCTGCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTTTTATAA--CAC-GCCCGTGATCTCTTAGTGGCATCTATGGTGCGGGA-TATTACGTACAA------C-AAATGAA
droMoj3 Unknown ACT-------------------------------------------------------------------AGTGATTGGCACTGGGAGAATTCACAGTTGA-TTATAT--AATATTCTGTGGTTCTGC-----------GGGTGCCAAAATATAATAT---------TCGGAATAAT
droGri2 scaffold_15126:6621358-6621517 - CTACCTGAATTTCTGCTGGGTAAGTTATTTTTTTCAAGTGATTTTTCTTGTT-GTTCTGCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTATTTTAA--CAC-GCCCGTGATCTCTTAGTGGCATCTATGGTGCGGGA-TATTACGT---------GCAGA---AA

dme-mir-263b intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:15836491-15836610 - CTGTAGCTCTTCA-----------------------------A------TTTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAAAACCG-GCTTTGTACAACGATT------------TCT
droSim1 chr3L:15181316-15181435 - CTCTAGCTCTTCA-----------------------------A------TTTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTGAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAAAACCG-GCTTTATACAACGAAT------------TCT
droSec1 super_0:7944386-7944505 - CGCTAGCTCTTCA-----------------------------A------TTTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTGAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAAAACCG-GCTTTATACAACGATT------------TCT
droYak2 chr3L_random:2539138-2539257 - CGATAGCTCTTCA-----------------------------A------TCTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCAACG-GCTCTATACAACGATT------------TCT
droEre2 scaffold_4784:18090156-18090270 - CTG--GCGATTCA-----------------------------AACC---ATAGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGATTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCAACA-GCTCCATACAACG------------------
droAna3 scaffold_13337:11320710-11320858 + TTGTGATTTTTGAATCAAATATTCTG--------------G----ACTCTCTGCTGTCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTGAAATAATG-GCCTAAAACCTCAAAAAAGGATATTTATTAT
dp4 chrXR_group6:3598033-3598148 - CGATCGTTA-----------------------------------------TTGCTGGCATTGGCTCTTGGCACTGGGAGAATTCACAGTTGGTTTCCAT---ATATTCTGTGGTTCTGCGGGTGCC-AAAATCGAATGTTCG-GCTCGAAACAGCAGCT------------GAA
droPer1 super_9:1894031-1894138 - T--------------------------------------------------TGCTGGCATTGGCTCTTGGCACTGGGAGAATTCACAGTTGGTTTTCAT---ATATTCTGTGGTTCTGCGGGTGCCCAAAATCGAATGTTCG-GCTCGAAACAGCAGCT------------GAA
droWil1 scaffold_180727:1452378-1452537 + CTTAAATTCTAAG-AAAGATTTTCTGTGTGTGTTTGAACGAAAATAAAGTCTGCTCACAATGCATCTTGGCACTGGGAGAATTCACAGTTGATTCTTATTCGATATTCTGTGGTTCTGCGGGTGCC-AAAATCTAATGTTTGAGCTGTGATCATCGAAA------------AAG
droVir3 scaffold_13049:24412507-24412633 - TTGT-GTTCTTCT------------------------ACGGAAAGCAGAGCTACTGCCATTTCATCTTGGCACTGGGAGAATTCACAGTCGATTACATA---ATATTCTGTGGTTCTGCGGGTGCC-AAAATGTAATGTGTG-GACCAAGACAGC-----------------CT
droMoj3 Unknown AC-TAGT---------------------------------------------------------GATTGGCACTGGGAGAATTCACAGTTGATTATATA---ATATTCTGTGGTTCTGCGGGTGCC-AAAATATAATATTCG-GAATA------------------------AT
droGri2 scaffold_15110:24319786-24319904 - ATATTGT--GGAA-----------------------------A------GCTACTGCCATTACATCTTGGCACTGGGAGAATTCACAGTTGGTTATATA---ATATTCTGTGGTTCTGCGGGTGCC-AAACTGTAATGTGTG-GACATAGA-AACAACC------------TGA

dme-mir-274 antisense_to_intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:11650003-11650132 + AG-T----TTTGGTGAC--------GAATCC---------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTG--------------------TT------------------TGGCCG-CCAGGAT--TACTCGTTTTTGCGATCACAAATTATGAAATTGCAGCAAAA-CT---------CAACGA--------AATTG
droSim1 zdo16e12.g1:275-405 + AG-T----TTTAGTGAC--------AAATCC---------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTG--------------------TT------------------TGGCCA-CCAGGAT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-TG---------CAACAA--------AAATG
droSec1 super_0:3837012-3837141 + AG-T----TTTAGTGAC--------AAATCC---------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTG--------------------TT------------------TGATCA-CCAGGAT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CG---------CAACAA--------ATATA
droYak2 chr3L:11678621-11678750 + TG-A----TTTTATGCC--------GAATCC---------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTG--------------------TT------------------TGGTCG-CCAGGAT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CG---------CAACAA--------AGTCG
droEre2 scaffold_4784:11632283-11632412 + TG-A----TTTTATGGC--------CAATCC---------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTG--------------------TT------------------TGGCCG-CCAGGAT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CG---------CAACGA--------AGTCG
droAna3 scaffold_13337:5918600-5918728 + GC-C----TTTTTTTAA--------AAAACA-------GAAATGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTT--------------------AC------------------AGGACATACAGGAT--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAA-AA---------CAGCAA--------A----
dp4 chrXR_group6:10040179-10040309 - CC-TGGCACCTGGAACC--------TGGTCC---------CGTGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGG---------------------C------------------TGGCCG--CAGGAC--TACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACG-AG---------CAGCGA--------AACTG
droPer1 super_61:320241-320372 - ACCTGGCACCTGGGACC--------TGGTCC---------CGTGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGG---------------------C------------------TGGCCG--CAGGAC--TACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACG-AG---------CAGCGA--------AACTG
droWil1 scaffold_180949:2705123-2705289 - TT-T-------TGTGAT--------TATTTT---TAATATCCTGTTGCAGTTTCATTTTGTGACCGACACTAACGGGTAGTAACGGGTTAACAAAGTCGTTTTTC------------------TGGCCT------TT--TACTCGTTTTTGCGATCACAAATTCTGAAATTGCAGCAAAAGATCAACGTATACAACAAACACATAAAATGA
droVir3 scaffold_13049:23860698-23860839 + AA-T----CCCAATGTC--------GCATCCTGT-------TTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGGG----------------------GCA-CCTCGAATAC-G--------CTGTTT--TACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-AG---------CAACAA-----GAAAATTT
droMoj3 scaffold_6680:18485462-18485604 + GA-A----TCTGTTGTCAAGT----GTATCC---------TGTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGAG----------------------GCA-TCTCGTATTC-G--------CTGTTTTATACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-CG---------CAACGA--------AAATG
droGri2 scaffold_15110:13805592-13805748 - AA-AGTGAAATAGTGCAACGTATACGAGTCCTGT-----GCGTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTA--------------------AAGGGCATCCTCGCATTCTG--------CTGGCT--TACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-AT---------CAACAA--------AACCA

dme-mir-275 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:7425780-7425907 + TGATGTTCCCCCGACTGTA--AAGTCTCCTACCTTGCGCGCTAATCAGTGACCGGGGCTGGTTTT-----TTATAT---ACAGTCAGGTACCTGAAGTAGCGCGCGTGGTGG-CAGACATATAT----CTCCATCTT-------------------CACC--AT
droSim1 chr2L:7217350-7217477 + TGATGTTCCCCCGACTGAA--AAGTCTCCTACCTTGCGCGCTAATCAGTGACCGGGGCTGGTTTT-----TTATAT---ACAGTCAGGTACCTGAAGTAGCGCGCGTGGTGG-CAGACATATAT----CTCCATCTC-------------------CGCC--AT
droSec1 super_3:2941240-2941367 + TGATGTTCCCCCGACTGAA--AAGTCTCCTACCTTGCGCGCTAATCAGTGACCGGGGCTTGTTTT-----TTATAT---ACAGTCAGGTACCTGAAGTAGCGCGCGTGGTGG-CAGACATATAT----CTCCATCTC-------------------CGTC--AT
droYak2 chr2L:5473766-5473897 - TGATGTTCCCCCGACTGAACAGAGTCTCCTACCTTGCGCGCTAATCAGTGACCGGGGCTGGTTTT-----TTATAT---ACAGTCAGGTACCTGAAGTAGCGCGCGTGGTGC-CAGACATATAT----CTCCAACTC-------------------CACGATAT
droEre2 scaffold_4929:16344506-16344633 + TGATGTTCCCCCGACTGAA--AAGTCTCCTACCTTGCGCGCTAATCAGTGACCGGGGCTGGTTTT-----TTATAT---ACAGTCAGGTACCTGAAGTAGCGCGCGTGGTGC-CAGACATATAT----CTCCATCTC-------------------CACC--AT
droAna3 scaffold_12916:15333987-15334092 + -------------ACTCTC--CAGTCTCCTACCTTGCGCGCTAATCAGTGACCGGGGCTGGTTTT-----TGCA-----ACAGTCAGGTACCTGAAGTAGCGCGCGTGGTGG-CAGACATATAT----C---------------------------CGCC--AT
dp4 chr4_group1:4175726-4175840 + CCACCTTC-------TTGA--AAGTCTCCTACCATGCGCGCTAATCAGAGACCGGGGCTGGTTTT-----TTCACT---GCAGTCAGGTACCTGAAGTAGCGCGCGTGGTGC-TAGACACGAA--CATC--TGT----------------------------GT
droPer1 super_5:1086449-1086563 - CCACCTTC-------TTGA--AAGTCTCCTACCATGCGCGCTAATCAGAGACCGGGGCTGGTTTT-----TTCACT---GCAGTCAGGTACCTGAAGTAGCGCGCGTGGTGC-TAGACACGAA--CATC--TGT----------------------------GT
droWil1 scaffold_180772:5257564-5257692 - -----------------------GTCTCTTACCTTGCGCGCTAATCAGTGACCAGGGCTGAGTAATTTTATTCAAT---ACAGTCAGGTACCTGAAGTAGCGCGCGTGGTTT-TAGACCAAGATTCATC------GCACGACGACGGCGACAACGACGAC--AC
droVir3 scaffold_12963:15419953-15420067 - --------------CTGCG--CCGTCTTTTACCGTGCGCGCTAATCAGTGACCGGGGCTGGTTTT-----GGTTATCCCACAGTCAGGTACCTGAAGTAGCGCGCGTGGTGGCCAGACGTATT--CATC------TT-------------------AAGC--TT
droMoj3 scaffold_6500:18399386-18399492 - -----------------------GTCTTTTACCGTGCGCGCTAATCAGTGACCGGGGCTGGTTTC-----GATTATCTCACAGTCAGGTACCTGAAGTAGCGCGCGTGGTGGCTAGACGCATT--CAAC------GCTC-----------------T-----GC
droGri2 scaffold_15126:5008400-5008494 + -----------------------GTCGTTTACCGCGCGCGCTAATCAGTGACCGGGGCTGGTTTT-----GATTATCCCACAGTCAGGTACCTGAAGTAGCGCGCGTGGTGGCCAGACGCAT------------------------------------------

dme-mir-276a intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:10358313-10358440 + CC-AA----------GA---------TATTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CAAGTGAATGCAAAA-------------------------------------ATCC
droSim1 chr3L:9747980-9748107 + CC-AA----------GA---------TATTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CAAGTGAATGCAAAA-------------------------------------ATCC
droSec1 super_0:2571151-2571278 + CC-AA----------GA---------TATTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CAAGTGAATGCAAAA-------------------------------------ATCC
droYak2 chr3L:10348871-10348998 + GC-AA----------GA---------TATTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CAAGTGAATGCAAAA-------------------------------------ATCC
droEre2 scaffold_4784:10353122-10353248 + GC-AA----------GA---------TAT-TTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCA--TTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-CAAGTGAATGCAAAA-------------------------------------ATCC
droAna3 scaffold_13337:15274238-15274391 + CC-AA----------GA---------TATTTCTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTAACATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCTAAAATCAAC-GA-----AA------ACATAAAGCGGAGTTGGTTTCCCCTTCAACCA-AAAAAT-C
dp4 chrXR_group6:8756376-8756505 + CG-AACGGAGGAGAAGATGTGTGTATT--TTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCATATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAGACAAC-GA------------------------------------------------------
droPer1 super_27:1191188-1191317 + CG-AACGGAGGAGAAGATGTGTGTATT--TTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCATATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAGACAAC-GA------------------------------------------------------
droWil1 scaffold_181024:222598-222734 - CTGAA----------AA---------TA--TGCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCATTTAATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-GTTACGAAA------ACAG----------------------CAACAAGAAA-AAAC
droVir3 scaffold_13049:16143973-16144087 + TG-AA----------AA---------TAT--GCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCAATTTATATACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAAC-GAAGTG--------------------------------------------------
droMoj3 scaffold_6680:20621809-20621940 - CC-AA----------AG---------TAT--GCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCAATTTAAATACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAACACAACTCAAACAAAAACGAAAACG----------------------------------AGCG
droGri2 scaffold_15110:12521926-12522042 - CA-AA----------AA---------TAT--GCTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTAAATTTAAATACTCATAGGAACTTCATACCGTGCTCTTGGAAGACCAAAACACAAC-AAAG------------------------------------------------AAAC

dme-mir-276b intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:10312870-10312998 + GACCA-------TC-----GAAC-GA--AAAAAACCGAAGTCTTTTTACCATCAGCGAGGTATAGAGTTCCTACGTTCCTATATT-C---AGTCGTAGGAACTTAATACCGTGCTCTTGGAGGACTGTCGACCAGCATA--------TAGTTAAAA
droSim1 chr3L:9702897-9703022 + GACCA-------TC-----GAAC-G---AAAAAACCGAAGTCTTTTTACCATCAGCGAGGTATAGAGTTCCTACGTTCCT--ATT-C---AGTCGTAGGAACTTAATACCGTGCTCTTGGAGGACTGTCGACCATCATA--------TAGTTGAAA
droSec1 super_0:2526747-2526871 + GACCA--------C-----GAAC-G---AAAAAACCGAAGTCTTTTTACCATCAGCGAGGTATAGAGTTCCTACGTTCCT--ATT-C---AGTCGTAGGAACTTAATACCGTGCTCTTGGAGGACTGTCGACCATCATA--------TAGTTGAAA
droYak2 chr3L:10302128-10302256 + GACAA-------CA-----GAAA-GAACAAAAAACCGAAGTCTTTTTACCATCAGCGAGGTATAGAGTTCCTACGTTCCT--ATT-C---AGTCGTAGGAACTTAATACCGTGCTCTTGGAGGACTGTCGACCATCATA--------AAGTTAAAA
droEre2 scaffold_4784:10306167-10306292 + GACAA-------CC-----GAAT-A---AAAAAACCGAAGTCTTTTTACCATCAGCGAGGTATAGAGTTCCTACGTTCCT--ATT-C---AGTCGTAGGAACTTAATACCGTGCTCTTGGAGGACTGTCGACCATCATA--------AAGTTGAAA
droAna3 scaffold_13337:15233368-15233487 + ATTT------------------CTG---AAGAAACCGAAGCCTATTTGCCATCAGCGAGGTATAGAGTTCCTACGTGCCA--CTTAAACTAGTCGTAGGAACTTAATACCGTGCTCTTGGAGGGCTGTCGACCATCATG--------A-----AAG
dp4 chrXR_group6:8706029-8706135 + ATCTA---------------------------AAGCGAAGCCTCTTTACCATCAGCGAGGTATAGAGTTCCTACGTGCCG-TATC-CAA-AGTCGTAGGAACTTAATACCGTGCTCTTGGAGGGCTGTCCATCAAC--------------------
droPer1 super_27:1146104-1146210 + ATCTA---------------------------AAGCGAAGCCTCTTTACCATCAGCGAGGTATAGAGTTCCTACGTGCCG-TATC-CAA-AGTCGTAGGAACTTAATACCGTGCTCTTGGAGGGCTGTCCATCAAC--------------------
droWil1 scaffold_181024:290398-290516 - AACAA--------------ATTT-G---AAATAAACGAAGCCTATTTACCATAAGCGAGGTATAGAGTTCCTACGTGCAA--ATTGCAATAATCGTAGGAACTTAATACCGTGCTCTTGGAGGGCTGTCGAACAACAA-----------------A
droVir3 scaffold_13049:16093198-16093326 + TATCT--------T---AAGATTTA---AAGATACCGAAGTCTATATACCATCAGCGAGGTATAGAGTTCCTACGTGCAA--ATTGCAATAATCGTAGGAACTTAATACCGTGCTCTTGGAGGGCTGTCGACCAGCAA-----------GAAAAGA
droMoj3 scaffold_6680:20678203-20678343 - GACCAAGTGAAACAGAG--ATTGTA---AAGATAACGAAGTCTATATACCATCAGCGAGGTATAGAGTTCCTACGTGCAA--ATTGCAATAGTCGTAGGAACTTAATACCGTGCTCTTGGAGGGCTGTCGACCAACAAA--------ACGAATAAA
droGri2 scaffold_15110:12572308-12572448 - AAATC-------TC---AAAACCGA---AAGATAACGAAGTCTATTTACCATTAGCGAGGTATAGAGTTCCTACGTGCAA--ATTGCAATAATCGTAGGAACTTAATACCGTGCTCTTGGAGGGCTGTCGACCAGCATTGATCAAAACAATTAAGT

dme-mir-277 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:5925729-5925858 + G-ATAAAAT--GCA--TCCT-TTGA--AGGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAACTATCTGA-AGCATGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAGGAAA------------------
droSim1 chr3R:15450308-15450437 - G-ATAAAAT--GCA--TCCT-TTGA--AGGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAACTATCTGA-AGCATGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAGGAAA------------------
droSec1 super_0:15987777-15987906 - G-ATAAAAT--GCA--TCCT-TTGA--AGGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAACTATCTGA-AGCATGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAGGAAA------------------
droYak2 chr3R:9973459-9973588 + G-ATAAAAT--GCA--TCCT-TTGA--AGGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAACTATCTGA-AGCATGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAGGAAA------------------
droEre2 scaffold_4770:15674279-15674408 - G-ATAAAAT--GCA--TCCT-TTGA--AGGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAACTATCTGA-AGCATGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAGGAAA------------------
droAna3 scaffold_13340:6488981-6489110 + A-GAAAAAT--GCA--TCCT-TTGA--AGGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAACATTCTGA-AGCTTGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAAGAAA------------------
dp4 chr2:5020571-5020711 - G-ATTAACTGAGCA--TCCT-TTGA--AGGTTTTGGGTTGCGTGTCAGGAGTGCATTTGCACTGAAACATTCTGA-AGCTTGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAAGACAAATA--TGC-GA------
droPer1 super_19:726018-726152 - G-ATTAACTGAGCA--TCCT-TTGA--AGGTTTTGGGTTGCGTGTCAGGAGTGCATTTGCACTGAAACATTCTGA-AGCTTGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAAGACAAAT---------------
droWil1 scaffold_181089:11168086-11168217 - G-AAAACAA--GCA--TCCTTTTGA--AGGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAAATTTCTAAAAGCTTGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCTCGAATGCAAGAAA------------------
droVir3 scaffold_12855:2684186-2684333 - GTATATAGA--GCATATCCT-T-GAGACAGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAACATTCTGAAAGCTTGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAAACAA-ATAAATGCTGAAT----
droMoj3 scaffold_6540:11885074-11885210 - T-ATAGCAT-AGCA--TCCTCTTGAGACAGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAACATTCTGA-AGCTTGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAACAA--CTAA-------------
droGri2 scaffold_14624:2266182-2266325 + A--TA------TCA--TC-T-TTGAGACAGTTTTGGGCTGCGTGTCAGGAGTGCATTTGCACTGAAACATTCTGAAAGCTTGTAAATGCACTATCTGGTACGACATTCCAGAACGTACAATCTTCCCGAATGCAAGAAA--TAAATGCTGAATAAAC

dme-mir-278 antisense_to_3pUTR Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:11544556-11544683 + T--GATACGAG---------------------------ACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTG---TCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------G---------TGTCCGT
droSim1 chr2R:10277194-10277321 + T--GATACGAG---------------------------ACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTG---TCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------G---------TGTCCGT
droSec1 super_1:9037606-9037733 + T--GATACGAG---------------------------ACCATAGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTG---TCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------G---------TGTCCGT
droYak2 chr2R:17445962-17446088 - T--GATACGAC---------------------------ACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTG---TCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------G---------TGTCCG-
droEre2 scaffold_4845:14318899-14319025 - T--GATACGAG---------------------------ACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTG---TCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------G---------TGTCCG-
droAna3 scaffold_13266:12641317-12641435 - TATG-----------------------------------TAACGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTG---TCCTTCGAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCA----------------------------TCCGG
dp4 chr3:19640883-19641018 - T--G-----------------------------------CAACGGTAATGGTACGGTGCGACCGGACGATGGTTCACAACGACCGTG---TCTCTTAAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCATCATCGTCGCGCCCCAG---------TGCTCGT
droPer1 super_37:642280-642415 - T--G-----------------------------------CAACGGTAATGGTACGGTGCGACCGGACGATGGTTCACAACGACCGTG---TCTCTTAAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCATCATCGTCGCGCCCCAG---------TGCTCGT
droWil1 scaffold_181009:1555699-1555856 - T--GTAACGAGTTAAAAAAAAATAAGGGGAGATCCCCCATAATGGTAATGGTACGGTGCGACCGGATGACGGTTCACAACGACCGTG---TCAATTTTACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCATAATC----------------------TCTAGG
droVir3 scaffold_12875:6427523-6427640 - T--G---------------------------------------GTTTATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGCA-TACTTTTAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------A---ATCAG------AT
droMoj3 scaffold_6496:23589388-23589515 + T--G---------------------------------------GTTTATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTACAGTTTTTTCAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------GCAAATCAGATATCAGC
droGri2 scaffold_15112:1314106-1314223 - T--GGTC--------------------------------------TGATGGTACGGTGCGACCGGATGACGGTTCACAACGACCGTGCT-TATTTTTAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCA----------------A----------ATCAGT

dme-mir-279 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:25041292-25041421 + ACTGG--------AGCTGGAATTGG-AATTCATACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATTGATTTTCTT-AGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAAG--------------CACGT
droSim1 chr3R:24712183-24712312 + ACTGG--------AGCTGGAATTGG-AATTCATACTGCTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATTGATTTTCTT-AGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAAG--------------CACGT
droSec1 super_4:3904072-3904201 + ACTGG--------AGCTGGAATTGG-AATTCATACTGCTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATTGATTTTCTT-AGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAAG--------------CACGT
droYak2 chr3R:21456037-21456166 - ACTGG--------AACTAGAATTGA-AATTCATACTACTGTTTTTAGTGGGTGAGGGTCCAGTGCTTCACATTGATTTTCTT-AGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAAG--------------CACGT
droEre2 scaffold_4820:2989050-2989173 - ACTGG--------------AATTGG-AATTCATACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATTGATTTTCTT-AGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAAG--------------CACGT
droAna3 scaffold_13340:14200293-14200422 - GGCGG--------CGATACTAATAC-TACTACTACTACTGTTTTTAGTGGGTGAGGGTCCAGTGTTTCACATTGATTT-C---TGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCAGCAAG-----------GCCCACGT
dp4 chr2:1881900-1882031 + AGTGG--------TTTTA-AGTTCG-CGATCATACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATTGATTTTCTT-AGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCAACAGA-----------ATGCACGT
droPer1 super_7:2045298-2045429 + AGTGG--------TTTTA-AGTTCG-CGATCATACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATTGATTTTCTT-AGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCAACAGA-----------ATGCACGT
droWil1 scaffold_181108:1734340-1734482 + ACTAC--------TACTACGACTAG-AACAACTACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATTAAATAT-TT-AGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCGAAAATAAAAAAAGAAACACGT
droVir3 scaffold_12822:2330907-2331031 + ACGAG-----------TGGA-TCGAATATGCGTACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATTCGTTTTTTCAAGTATTTGTGACTAGATCCACACTCATTAACAACGGTAGTTCAATCAGCAAA--------------TA---
droMoj3 scaffold_6540:26447118-26447234 + AC-GG--------TTCTG-A-TCGGAAATACGTACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATTGTTTG-CTTAAGTATTTGTGACTAGATCCACACTCATTAAAAACGGTAGTTCAATC-------------------------
droGri2 scaffold_14624:3249724-3249850 + ATAAGGGAAGTGATTTA-----TGGATAACCGTATTACTGTTTTTAGTGGGTGAGGGTCCAGTGTTTCACATTGTTT--ATT-TGTATTTGTGACTAGATCCACACTCATTAAAAACGGTAGTTCAATCAACA-------------------GT

dme-mir-280 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:4185596-4185720 + CTGACGT-------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAA-------------------------------------GTCGA------GGTCCTCCA-----------CACT-------GCACTCGC-CGC-CTCGA
droSim1 zee54c10.b1:599-724 + CTGACGT-------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAA-------------------------------------GTCGA------GGTCCTGCA-----------CACT-------GCACTCGC-CGC-CTCGA
droSec1 super_1:1832273-1832397 + CTGACGT-------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAA-------------------------------------GTCGA------GGTCCTGCA-----------CACT-------GCACTCGC-CGC-CTCGA
droYak2 chr2L:16840791-16840915 + CTGACGT-------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAA-------------------------------------CTTGA------GGTCCTGCA-----------CACT-------GCACTCTC-CCG-CTCGA
droEre2 scaffold_4929:18446687-18446817 - CTGACGT-------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAA-------------------------------------GTCGA------GGTCCAGCA-----------CACTGCACACTGCACTTGC-C-C-CTCGA
droAna3 scaffold_13266:1806990-1807233 - TTGAAAT-------------------G-----TGTGTATGTGGG--------TG----------GGTG----GGTGTGTGTGCACTTTCTGCCATCCAGACTGCCAGCCAGCCATCTAGCCAGCCTGCCTGACTGCTTTCCTTGCCACTT-----GTGTGTATGTGTGTGTG-----------------TGTATGAGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAA-------------------------------------G-------------CCTGAACAACTTTGGAACACT-------GCAATCGC-CTT-CTGGA
dp4 chr3:2170016-2170201 + TTGATGC-------------------C-----tgtgtgtgtgtg--------------------------tgtgtgtgtgtCCAGTCGGTGTCATGA-GG-------------------------------------------------CGTATGCC----GTGTGTGTGTG-----------------TGTGTGAGACGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATG--TGCAG-------------------------------------CTGAA------GAGCCTGTC-----------CATT-------GCACAATC-C-C-CACCC
droPer1 super_2:2339680-2339867 + TTGATGC-------------------C-----TGTGTGTGTGTG----------------------------TGTGTGCGTCCAGTCGGTGTCATGA-GG-------------------------------------------------CGTATGCCgtgtgtgtgtgtgtg-----------------tgtgtgAGACGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATG--TGCAG-------------------------------------CTGAA------GAGCCTGTC-----------CATT-------GCACAATC-C-C-CTCCC
droWil1 scaffold_180701:589914-590141 + TTGATGCCCCAACACACACCCACCTCC-----TATCTATCTATCTATCTCTGTCTCACCATAACTGAg------------------------------------------------------------------------------------------tgtgtgtgtgtgtg-----------------tgtgtatgtTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATG--TGCAACCGAAGCAGCAGAAGCCAGGCC--CAA----------GTAGAAGCAAAAGGCCTGAA-----------CATT-------GCACTTGGGC-CATACGC
droVir3 scaffold_12875:9206154-9206327 + TTGATGT-------------------CGTCTTTGTGTG-----CCAT------------------GTGTGTGTGTGTGTGTCCATT-------------------------------------------------------------------------------------T-----------------TGTGTGTGTTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATACATGCCA------------------GA----GCAGTGCATGCAACTG------------C-CCA-----------CAAT-------GCACATTT-C-TATCCGC
droMoj3 scaffold_6496:17934933-17935113 - TTGATGT-------------------CGTCGTTGTGTA-----CCATGCATTCG----------TGTG------------------------------------------------------------------------------------------TGCCTGTGTGTGTG-----------------CGTGTGTGTTAGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATACATGCCA------------------GGCCGGCCAGTGCATGCAACTT------------C-TCT-----------CAAT-------GCATATTC-C-AATCCAC
droGri2 scaffold_15245:2520625-2520797 + TTGATGT-------------------TGTCGTTGAGT------CTAtgtctgtg----------tgtg------------------------------------------------------------------------------------------tgtgtgtgtgtgtgtgtgcgagtgtCCAGTTCGTGTGTGTTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATACATGCAA-------------------------------------CTC------------CTTCT-----------CAAT-------GGATCCCC--------AC

dme-mir-281-1 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:8057863-8057982 - AATCGAATC-CAAATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA--AACTA-TT-TAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGATGCGCTGTGAG
droSim1 chr2R_random:2148092-2148211 - AATCGAATC-CAAATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA--AAGCA-TT-TAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGATGCGCTGTGAG
droSec1 super_1:5602965-5603084 - AATCGAATC-CAAATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA--AACCA-TT-TAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGATGCGCTGTGAT
droYak2 chr2R:8893333-8893452 + AATCGAATC-CATATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA--ATTCA-TT-TAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGATGCGCTATGAG
droEre2 scaffold_4845:17736182-17736301 + AATCGAATA-CATATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA--AACCA-TT-TAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGATGCACTATGAG
droAna3 scaffold_13266:2568740-2568853 + CT---ATCT-CGAATGCGAATACGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA--TACCT---ATAAC---ACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGCTTCGCTCCGAT
dp4 chr3:418413-418523 - AA---AACA-CGAATGCGAATAGGTGAATAAAGAGAGCTGTCCGTCGACAGTCAACG--TACCAATT-TAAT---ACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGTTGCGC----AG
droPer1 super_2:605310-605420 - AA---AACA-CGAATGCGAATAGGTGAATAAAGAGAGCTGTCCGTCGACAGTCAACG--TACCAATT-TAAT---ACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGTTGCGC----AG
droWil1 scaffold_181141:3241875-3241979 + AG---A-----AAAAGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGTTAAACGA-TTTTAAA---ACTGTCATGGAATTGCTCTCTTTGTATGATATTCGACGT--------GAC
droVir3 scaffold_12875:19829913-19830024 + AATCGTACC-CAAAAGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGT--AACAA-ATGTAAT---ACTGTCATGGAATTGCTCTCTTTGTATGATATTCGACGTTGCCC------
droMoj3 scaffold_6496:6376225-6376337 - AATCGTAGCGAAAATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGT--AAAGA-TTGTAAA---ACTGTCATGGAATTGCTCTCTTTGTATGATATTCGACGTTGCCC------
droGri2 scaffold_15245:18178188-18178294 + AATT---AT-GAAAAGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGT--ATAAA-TTTTAAT---ACTGTCATGGAATTGCTCTCTTTGTATGATATTCGACGTTGC--------

dme-mir-281-2 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:8057643-8057764 - CTTTCAG----ATC-CTCCGCGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A----AGACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TAT
droSim1 zdp42d09.g1:294-416 + CTTTCAG----ATC-CTCCGCGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A----AGACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TAT
droSec1 super_1:5602746-5602867 - CTTTCAG----ATC-CTCCGCGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A----AGACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TAT
droYak2 chr2R:8893539-8893660 + CTTTCAG----ATC-CCCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A----ATACCAATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAGGCGACGAT--TAG
droEre2 scaffold_4845:17736400-17736520 + CTTTCAG----ATC-CTCCACGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A----ATACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TA-
droAna3 scaffold_13266:2568922-2569043 + CCGCAAG---GATA-CTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-AA--AACACGGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT-----
dp4 chr3:418209-418322 - TAT---A----ATA-CTGAACGAATAGTGAAATAAAGAGAGCTATCCGTCGACAGTCAAGTT-A----A-TCAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGCCGA------
droPer1 super_2:605106-605226 - TTTTCTGTATAATA-CTGAACGAATAGTGAAATAAAGAGAGCTATCCGTCGACAGTCAAGTT-A----A-TCAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGCCGA------
droWil1 scaffold_181141:3242068-3242181 + T------------------CCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCCAGTTTAATACATCCGAATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAATCGACGGT--TTT
droVir3 scaffold_12875:19830099-19830219 + CTAACCA----AAC-T--TGCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGCT-A-----TACAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGACGACTTTAT
droMoj3 scaffold_6496:6376053-6376173 - CCCTCAG----T----TCTGCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A---TATACATATTTTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAATCGACGAT-ATAT
droGri2 scaffold_15245:18178374-18178494 + GTTTCAC----AACAAATTACGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A---TATACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGACGAT-----

dme-mir-282 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:3251007-3251133 + CCGTTCTTT---------AACTATAGTTTCCTTCTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAA-AGCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAACAATCAGC------------------GAAAACGGA
droSim1 chr3L:2784381-2784507 + CCGTTCTTA---------AACTAAAGTTTCCTTTTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAA-AGCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAACAATCAGC------------------GAAAACGGA
droSec1 super_2:3244745-3244871 + CCGTTCTTA---------AAATAAAGTTTCCTTTTAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAA-AGCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGTGAACAATCAGC------------------GAAAACGGA
droYak2 chr3L:3795918-3796050 + TCGTTCTATATCCGTTATAT---CAGTTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TACGAA-AGCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGTGAAAAATCAGC------------------GAAAACGGA
droEre2 scaffold_4784:5933708-5933834 + TCGTTCTAT---------CACCACAGTTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCAAA-AGCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGAACAAGCAGC------------------GAAAACGGA
droAna3 scaffold_13337:7556585-7556720 + CCGTTCTAA-TTCGAAA-ATCGAAAATTTCCTTATAGATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAA-AGTCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGCGACAAGACATC----------------ACAAAAACGGA
dp4 chrXR_group8:3299974-3300083 - ---------------------------TGCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGAAAACCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGAAGAAATGCATC------------------AAAAGCGGA
droPer1 super_65:103931-104040 - ---------------------------TGCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGAAAACCCGATCAGACATAGCCTATAAGAGGTTAGGTGTACCAAGGAAGAAATGCATC------------------AAAAGCGGA
droWil1 scaffold_181136:1999668-1999787 + TTTTCCTTTAT--GTAA-TATTAATATATCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGGA------TTCAGACATAGCCTATGAGAGGTTAGGTGTACCAAGGAGAAAATACAAC------------------A--------
droVir3 scaffold_12758:910696-910814 - GCGTCCGAC--------------AAATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTCGAT-ATACGGTCAGACATAGCCTATGAGAGGTTAGGTGTACCAAGGGG-ACAAGCAGC------------------GAGGGCG--
droMoj3 scaffold_6680:1963284-1963406 - ATTTTTTTT-TGCG------GT-GCATTTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCA--TTTGAT-ATAAGATCAGACATAGCCTATGAGAGGTTAGGTGTAGCAAGGGG-TCAAACAGC------------------AGA----GA
droGri2 scaffold_15110:607073-607202 + ---------------------------TTCCTTATAAATCTAGCCTCTACTAGGCTTTGTCTGTGCACTTTTTCA-ATTCAATCAGACATAGCCTATGAGAGGTTAGGTGTACAAATGGATCAAAGCAACAAGGCTGCTGTCGGGGACTAAAAATGA

dme-mir-283 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:15401974-15402103 + AGAGAA-A----------AG-----------------------TGTCACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT
droSim1 chrX_random:4022807-4022936 + AGAGAA-A----------AG-----------------------TGTCACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT
droSec1 super_73:136400-136529 + AGAGAA-A----------AG-----------------------TGTCACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT
droYak2 chrX:9587590-9587719 + AGAGAA-A----------AG-----------------------TGTCACCTTACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT
droEre2 scaffold_4690:11632475-11632604 - AGAGAA-A----------AG-----------------------TGTCACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCAT
droAna3 scaffold_12929:2900376-2900509 - GTGTTA-CAGTGTT------------------------CA-----CCACCTCACCTGATTCTTAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTGATTA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTCGAATTGCATTTTATCACCAA
dp4 chrXL_group1a:976013-976147 + AGAGAA-A-----------G------------CGACGTCACGA-TTCACCTCA--CGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGC-AAGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA-
droPer1 super_26:1090677-1090833 + AGAGCG--AACGAGAGAGAGTGCCAGAGAAAGCGACGTCACGA-TTCACCTCA--CGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGC-AAGATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA-
droWil1 scaffold_180702:1594772-1594907 - GAGTGC-GAGTGGG------------------------A----GGGAGCCTAACG-AATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTATGCCTAGATATTTGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTAATCACCAA
droVir3 scaffold_12970:2047646-2047770 + ACA---------------AG----------------------ATGTCACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCCTAAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACC--
droMoj3 scaffold_6359:3257693-3257822 + AGTGAACC----------AG----------------------CTGTCACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCCC-AATA--TGAAACACTCGGAATTTCAGTTGGTATATACTTTTTTGAATTGCATTTTATCACCA-
droGri2 scaffold_14853:6953507-6953633 - AGAAT--------------G--------------A--------CGTCACCTCACCCGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCAATGCC-AAATA--TGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTTATCACCA-

dme-mir-284 three_prime_UTR Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:8377222-8377351 - ATAATCGGTGATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGGC-AAGGCTTGAATAATGCTCCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCGAT-----------------------------------ATTCCTCAACAATG
droSim1 chr3R:13050845-13050974 + ATAATGGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGGC-AAGGCTTGAATACTGCTCCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCGAT-----------------------------------ATTCCGCAACAATG
droSec1 super_0:13609227-13609356 + ATAATGGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGGC-AAGGCTTGAATACTGCTCCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCGAT-----------------------------------ATTCCGCAACAATG
droYak2 chr3R:12662228-12662357 - ATAATGGGTGATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGGC-AAGGCTTGAGTACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCAAT-----------------------------------ATTCCGCAACAATG
droEre2 scaffold_4770:13275536-13275665 + TTAATGGGTGATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGGC-AAGGCTTGAGTACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCAAT-----------------------------------ATTCCGCAACAATG
droAna3 scaffold_12911:3307955-3308116 - ACAAAAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGGC-AAGGCTTGAGAACTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCAAGTACAGCA---GAAAGAGCCGTGAACCGTGTTCAATATGCCACGACAATG
dp4 chr2:2484958-2485100 - ATCAGAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGGGAAGGC-AAGGCTTGAGCACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCAAGCACAACGCTGAATGG------------TGCTCAAAATAC----------
droPer1 super_7:2652948-2653090 - ATCAGAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGGGAAGGC-AAGGCTTGAGCACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCAAGCACAACGCTGAATGG------------TGCTCAAAATAC----------
droWil1 scaffold_181130:2186197-2186330 - GTGTGTGACAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTTAGGGGAAAGGCTTGAGCATTGCATACTAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCAAGCTCAACGTT--------------------------------CAACAGTG
droVir3 scaffold_12855:584465-584599 + ATAAATGGAAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTAAAGGG-AAGGCTTGTGCACTGCTTACAAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCAAGGACAACGTTGGAAAG------------TGTC------------------
droMoj3 scaffold_6540:12381805-12381927 - TGTAT---TAATTGCGTTGCAGTTCCTGGAATAAAGTTGACTGTGTCGCCTGTAAGGGG-AAGGCTTTTGCATTGCTTACAAAGTCAGCAACTTGATTCCAGCAACTGCGGCCCAAGCT---------------------------------------CAACGTGG
droGri2 scaffold_14906:1700701-1700824 + ATA--TGGAAATTGGGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTAAGAGG-AAGGCTTGTGCACTGCTTACAAAGTCAGCAACTTGATTCCAGCAATTGCGGCTCAAACT---------------------------------------CAACGTTG

dme-mir-285 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:11939178-11939306 - AC-----TTGCC---CT---------------GCCACTTCGAATCGAAGAAC-TGAGATCGATTGGTGCATAGATATC----AGGAGAACCCACTCA---------ATTTAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAA------------GTGTC
droSim1 chr3L:11307954-11308082 - AC-----TTGCC---CA---------------GCCACTTCGAATCGAAGAAC-TGAGATCGATTGGTGCATAGATATC----AGGAAAACCCACTCA---------ATTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAA------------GTGTC
droSec1 super_0:4127812-4127940 - AC-----TTGCC---CA---------------TCCACTTCAAATCGAAGAAC-TGAGATCGATTGGTGCATAGATATC----AGGAAAACCCACTCA---------ATTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAA------------GTGTC
droYak2 chr3L:11984774-11984902 - TC-----TTGCC---CT---------------ACCACTTCGAATCGAAGAAC-TGAGATCGATTGGTGCATAGATATC----AAGACAACCCACTCA---------ATTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAA------------GTGTC
droEre2 scaffold_4784:11929878-11930011 - TCAGGAGCTGCA---CT---------------CCCACTTCGAGTCGAAGAAC-TGAGATCGATTGGTGCATAGATATC----AAGAAGCCCCACTCA---------ATTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGGA------------GTGTC
droAna3 scaffold_13337:6191341-6191461 - GC---------C---AG---------------GATAATTCGAATCAAAGAAC-TGAGATCGATTGGTGCATAGATATC----AAGGAGATCCGATCA---------TTTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAACCACTCAACAGA-----------------
dp4 chrXR_group6:1929779-1929903 - TC-----TTACA---AT---------------TACAGTTCGAATCGAAGAAC-TGAGATCGATTGGTGCATAGATATC----AAGAGGACTCGCTAAT--------TTTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATGAGAACCATTCAACAGA-----------------
droPer1 gnl|ti|738578230:636-763 + TC-----TTACA---AT-------------T-TACAGTGGGAATCGAAGAACCTGAGATCGATTGGTGCATAGATATC----AAGAGGACTCGATAAT--------TTTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATGAGAACCATTCAACAGA-----------------
droWil1 scaffold_180949:5768880-5769006 + AC-----A------------------------AATTGTTCGAATTAAAGAAC-TGAGATCGATTGGTGCATAGATAAT----ATGCGAATTCTATCATTTGATTTCATTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATTAGAACCAATCAACAAG-----------------
droVir3 scaffold_13049:21101427-21101556 + AT-----GCAC----CA---------------GCCAGTTCAAATTGAAGAAC-TGAGATCGATTGGTGCATAGATATCGCCCAAAA--AGTAATTCA---------TTTCAATTCTAGCACCATTCGAAATCAGTGCTTTTTATTCGAACCGATCAGCGGC------------GCATC
droMoj3 scaffold_6680:15475365-15475526 + AC-----ACACCCAGCAGACATCAAACACCACACCAGTTCAAATTGAAGAAC-TGAGATCGATTGGTGCATAGATAACGCCCAAAAAG--TCATTTT----A----TTTCAATTCTAGCACCATTCGAAATCAGTGCTTTTTATTGGAACCGATCAACGGTGTATGGGAACAAGTGTC
droGri2 scaffold_15110:22570097-22570226 - AT-----GTAG----CA---------------GCCAGTTCAAATTGAAGAAC-TGAGATCGATTGGTGCATAGATATCGTCCAAGAA---TAATTTA----A----TTTCAATTCTAGCACCATTCGAAATCAGTGCTTTGTATTGGAACCGATCAGCGGC------------GCATT

dme-mir-286 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:15548912-15549041 - TTG-G--------GCAC--------T------CC----------AGTTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCAAA-G-A------AA-------GGTT----TCG--ATTAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGC-----TCA--G
droSim1 chr2R:14254346-14254476 - TTG-G--------GCAC--------T------CC----------AGTTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCCAA-AGA------AA-------GGTT----TCG--ATCAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGC-----TCA--G
droSec1 super_1:13063641-13063770 - TTG-G--------GCAC--------T------CC----------AGTTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCCAA-T-A------AA-------GGTT----TCG--ATCAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGC-----TCA--G
droYak2 chr2R:13623749-13623876 + TAG----------GCAC--------T------CC----------AGTTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCAAA-A--------GA-------GGTT----TCG--ATCAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGC-----TCA--G
droEre2 scaffold_4845:9749162-9749292 - TAG----------GCAC--------T------GC----------AGTTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCAAA-G--------AA-------GGTT----TCG--ATCGA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGC-----ACACTG
droAna3 scaffold_13266:9731344-9731477 + TTT-A--------GCAT--------C------AG----------AATTTTAAAATTGAATGGCGATTGTCGGTATGGTCGCTTTTTCACA-A-A------AAAATT---GGTT----ACC--AACAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCATCAAGC-----TAA--A
dp4 chr3:12677574-12677700 - AAA-A--------GAAG--------A------CA----------AATTTTAAAATTAAATGGCGATTGTCGGTTTGGTCGCTTTTTACCA-----------G-------GGTT----CCG--ATCAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAGAATGTTCAACATGG-----CCA--A
droPer1 super_2:8905966-8906092 + AAA-A--------GAAG--------A------CA----------AATTTTAAAATTAAATGGCGATTGTCGGTTTGGTCGCTTTTTACCA-----------G-------GGTT----CCG--ATCAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAGAATGTTCAACATGG-----CCA--A
droWil1 scaffold_180701:1651730-1651882 - TAT----------GCAA--------T------TG-AAATT----ACTTTTAAAATTGAATGGCGATTGTCGGTATAGTCTCTTTTTCCAA-A--------AATCTTGTTTGTTTTTGCCA--ATCTAATAAGAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACAAGCAACAACCA--A
droVir3 scaffold_12875:4112084-4112243 + GTG-----TTCCAGTATTCCAGTGTTTCAATTCCAATATTCCAGTATTTTAAAATTAAATGGCGATTGTCGGTATGGTCGCTTTTTCAAA-C--------AA-------TATA----CCATTATC--TATATAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACGTAT-----ATA--A
droMoj3 scaffold_6496:20936771-20936914 - TCC-A--------GTGT--------T------CGAAAATTATAAAATTTTAAAATTAAATGGCGATTGTCGGTATGGTCTCTTTTTCAACAT-ATACACCAA-------ACAT----T------C--TATATAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACAATT-----TCA--A
droGri2 scaffold_15112:2108802-2108953 - TGTGTGTGTT---GCAG--------T-CAAACCCAG----CCAGTATTTTAAAATTAAATGGCGATTGTCGGTATGGTCGCTTTTGAACC-T-AAACTC------T---ATAT----ACA--ATA--TATATAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACATAG-----GCA--T

dme-mir-287 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:17574595-17574717 + AAGCC--------CACTC-A--CA-----------------GAGGACGCCGGGGATGTATGGGTGTGTAGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACG-ACTGTGAGCAA--AACAC---G-TCGGA
droSim1 chr2L:17277816-17277938 + AAGCT--------CACTC-A--CA-----------------GAGGACGCCGTGGATGTATGGGTGTGTAGGGTCGGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACG-ACTGTGAGCAA--AACAC---G-TCGGA
droSec1 super_7:1215433-1215555 + AAGCT--------CACTC-A--CA-----------------GAGGACGCCGTGGATGTATGGGTGTGTAGGGTCGGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACG-ACTGTGAGCAA--AACAC---G-TCGGA
droYak2 chr2R:3525115-3525236 - ACATA--------TATA-CACACA-----------------GAGCAAGCCGTGGATGTATGGG--TGT-GGGTCTGAAATTTTGCACACATTTACAGTAATTGTAAATGTGTTGAAAATCGTTTGCATG-ACTGTGAGCAA--AACAC---T-TCGGA
droEre2 scaffold_4845:6676077-6676186 - GTGTG--------GACG-------------------------------C--TGGATGTATGGGTGTGTGGGCTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACG-ACTGCGAGCAA--AACAC---G-TCGGA
droAna3 scaffold_12916:3302442-3302546 - ATA----------------------------------------GGG--C--TGTGTGTATTGG--TAGTGGGTCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACA-ACTGTGAGCAA--AGCAC---G-TCGGA
dp4 chr4_group3:10858860-10858990 - ACACA--------CACA-CA--TA-----AATATATTCACGGAGACAGTCT--TATGTGTGAG--TGTGGGGCCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACA-ACTGTGAGCAA--AACAC---G-TCGGA
droPer1 super_8:2069946-2070076 - ACACA--------CACA-CA--TA-----AATATATTCACGGAGACCTGCT--TATGTGTGAG--TGTGGGGCCTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACA-ACTGTGAGCAA--AACAC---G-TCGGA
droWil1 scaffold_180764:928810-928950 - ACTCC--------CACAT-A--CATTGGAAAGAGCTTCTCCGTAATATGTA--TATGTATTGC--TGTAAAGTCTGAAATTTTGCACACATTTACAATTATTGTAAATGTGTTGAAAATCGTTTGCACAAACTGTGAGCAA--AATCCTGTAGCTGGG
droVir3 scaffold_12963:16502531-16502646 + AGATT--------GACTC-C--CA-----------------CGCTTTCGCACACACACAAACGTGCATAATGTTTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACA-ACTGTGAGCAA-------------CCGA
droMoj3 scaffold_6500:21428983-21429089 + ACTCC--------CACGC-A--CA-------------------------------CACACACGCGCATAATGTTTGAAATTTTGCACACATTTACAATAATTGTAAATGTGTTGAAAATCGTTTGCACA-ACTGTGAGCAA--CCAAC---A---GCA
droGri2 scaffold_15252:13917089-13917209 + CAGTTTTCACTCCCACAC-A-------------------------------CTCACACACACATGCATAATGCTTGAAATTTTGCACACATTTACAATATTTGTAAATGTGTTGAAAATCGTTTGCACA-ACTGTGAGCAAGCAACAC---A-CATGT

dme-mir-288 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:20618351-20618477 - TGGAATTCCGGGT-------------------GCC------GGCCATGTCGTAATTAGCGGAGCACGGCATC-GCCGGCGATAATTAATGACGGTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGC-ACCTCCCAAT
droSim1 chr2L:20181621-20181747 - TGGAATTCCGGGT-------------------GCC------GGTCATGTCGTAATTAGCGGAGCACGGCATT-GCCGGCGATAATTAATGACGGTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGC-ACCTCCCAGT
droSec1 super_18:498537-498663 - TGGAATTCCGGGT-------------------GCC------GGTCATGTCGTAATTAGCGGAGCACGGCATT-GCCGGCGATAATTAATGACGGTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGC-ACCTCCCAGT
droYak2 chr2R:6966481-6966606 - TGGAATTCCGGGT-------------------GCC------GGTCATGTCGTAATTAGCGGAGCACGGCGTT-GCCGGCGATAATTAATGACGGTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCACAGGC-ACCTCCA-GT
droEre2 scaffold_4845:3835093-3835218 + TGGAATTCCGGGT-------------------GCC------GGTCATGTCGTAATTAGCGGAGCTCGGCGTT-GCCGGCGATAATTAATGACGGTGGTCACGTTGGTTTCATGTCGATTTCATTTCAGGACACGGCCGCAGGC-GCCTCCA-CT
droAna3 scaffold_12916:7118734-7118858 - AAAAGTCCGGGGT-------------------CCA------GGTCATGTCGTAATTAGCAGGGCACAGAATT-GCCGGCGATAATTAATGACGTTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGC-TCCACCCA--
dp4 chr4_group3:7696584-7696728 + GGGAGGTCAGAGAGCTAGAGGGGGGGCCAGGCGCC-----TGGCCATGTCGTAATTAGCAGGGTACAGCGTT-GCCGGCGATAATTAATGACGTTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGC-AGG--CAGAC
droPer1 super_1:9142351-9142488 + CAGAAAGCTA-------GAGGGGGGGCCAGGCGCC-----TGGCCATGTCGTAATTAGCAGGGTACAGCGTT-GCCGGCGAAAATTAATGACGTTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGC-AGG--CAGAC
droWil1 scaffold_180708:2031441-2031569 - TGGCCGGCTGACT-------------------CCC------CCTCAGGTCGTAATTAGCAGCGCACAACATTCGTCGGCGATAATTAATGACGTTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGCCAGCTCTGATG
droVir3 scaffold_12963:13472850-13472962 + C----------------------------------------AGCCGCGTCGTAATTAGCTGTGCACAACGTT-GCTGGCGATAATTAATGACTTTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGC-AGTTCCTGTG
droMoj3 scaffold_6500:24709786-24709910 - G-----TCCAG---------------------GCAGGACATGGACGCGTCGTAATTAGCTGTGCACAGCGTT-GCTGGCGATAATTAATGACGTTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGC-AGTTCCT-GT
droGri2 scaffold_15126:6391659-6391788 - TTGTGTCCTGG----------------------CAGGACATGGCCGTGTCGTAATTAGCTGTGCAGAACGTA-GCTGGCGATAATTAATGACGTTGGTCACGTTGGTTTCATGTCGATTTCATTTCATGACACGGCCGCAGGC-AGTTCCTGTG

dme-mir-289 antisense_to_intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:13613907-13614035 + TAC------------------------GGTTTTTAGGTTGA-GTTTACAGTAAAATAAATATTTAAGTGGAGCCTGCGA---------CTT----------------------------------------CAGTCCCTCTGACTGACTGGGGTAAGTCACTTGAGCGTTTGTTGGCACGTAAAAGACATCATAATTAGCATT
droSim1 chr3L:12997848-12997976 + TAC------------------------GGTTTTTAGGTTGA-GTTTACAGTAAAATAAATATTTAAGTGGAGCCTGCGA---------CTC----------------------------------------CAGTCCCTCTGACTGACTGGGGTAAGTCACTTGAGCGTTTGTTGGCACGTAAAAGACATCATAATTAGCATT
droSec1 super_0:5775586-5775714 + TAC------------------------GGTTTTTAGGTTGA-GTTTACAGTAAAATAAATATTTAAGTGGAGCCTGCGA---------CTC----------------------------------------CAGTCCCTCTGACTGACTGGGGTAAGTCACTTGAGCGTTTGTTGGCACGTAAAAGACATCATAATTAGCATT
droYak2 chr3L:13706954-13707082 + TAC------------------------GGTTCTTAGGTTGA-GTTTACAGTAAAATAAATATTTAAGTGGAGCCTGCGA---------CTC----------------------------------------CAGTCCCTCTGACTGACTGGGGTAAGTCTCTCGAGCGTTTGTTGGCACGTAAAAGACATCATAATTAGCATT
droEre2 scaffold_4784:13614855-13614983 + AAC------------------------GGTTTTTAGGTTGA-GTTTACAGTAAAATAAATATTTAAGTGGAGCCTGCGA---------CTC----------------------------------------CAGTCCCTCTGACGGACTGGGGTAACTCACTTGAGCGTTTGTTGGCACGTAAAAGACATCATAATTAGCATT
droAna3 scaffold_13337:21827571-21827739 - TTC-CGGCACTCCGGCATTCCAGCTC-GGGTTTTAGGTTGA-GTTTACAGTAAAATAAATATTTAAGTGGAGCCTGCGACTCTG----CTACTGCC---ACTGCCACTGCCACTGCCACTGCCGCTC------------------------GGGGAGTCACTTGAGCGTTTGTTGGCACGTAAAAGACATCATAATTAGCATT
dp4 chrXR_group8:6818889-6819024 - TATCCG------------------TCGGGTTTTTAGGTTGA-GTTTACAGTGAAATAAATATTTAAGTGGAGCCTGCGACTGG---GACTC----------------------------------------CAG-----CTCTCCGACTGGGCTAACTCACTTGAGCGTTTGTTGGCACGTAAAAGACATCATAATTAGCATT
droPer1 super_36:488140-488275 + TATCCG------------------TCGGGTTTTTAGGTTGA-GTTTACAGTGAAATAAATATTTAAGTGGAGCCTGCGACTGG---GACTC----------------------------------------CAG-----CTCTCCGACTGGGCTAACTCACTTGAGCGTTTGTTGGCACGTAAAAGACATCATAATTAGCATT
droWil1 scaffold_180698:607141-607313 - TTT------------------------TTTTTTTAGGTTGAAGTTTACAGTAAAATAAATATTTAAGTGGAGTC---GACTGTGTCGACTACAGCCCGGACTACC---CGGACTGCTAGAACGACTCGGTTCCGACTCTTTTTCTGTCGGGGTAAAGTCACTTGAACGTTTGTTGGCACGTAAAAGACATCATAATTAGCATT
droVir3 scaffold_13049:19817984-19818083 - ---------------------------GTTTTTTAGGTTGA-GTTTACAGTAAAATAAATATTGAAGTGG---------------------------------------------------------------------------GCCT-GGGGAAGTCACTTGAACGTTTGTTGGCACGTAAAAGACATCATAATTAGCCGT
droMoj3 scaffold_6680:7513468-7513568 - G--------------------------GCTTTTTAGGTTGA-GTTTACAGTAAAATAAATATTGAAGTGGGCCC----------------------------------------------------------------------------GGGGAAGTCACTTGAACGTTTGTTGGCACGTAAAAGACATCATAATTAGCCGT
droGri2 scaffold_15110:17555344-17555443 + ---------------------------AGTTTTTAGGTTGA-GTTTACAGTAAAATAAATATTGAAGTGG---------------------------------------------------------------------------GCCT-GGGGAAGTCACTTGAACGTTTGTTGGCACGTAAAAGACATCATAATTAGCCGT

dme-mir-2a-1 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:19569882-19569987 - TATTGG-CGCATTCATGCTGGGCTCTCAAAGTGGTTGTGAAATGCATT-TC----CGCTTTGCGCGGCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTATCGTACA
droSim1 chr2L:19257947-19258052 - TATTGG-CGCATTCATGCTGGGCTCTCAAAGTGGTTGTGAAATGCATT-TC----CGCTTTGCGCGGCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTATCGTACA
droSec1 super_7:3184244-3184349 - TATTGG-CGCATTCATGCTGGGCTCTCAAAGTGGTTGTGAAATGCATT-TC----CGCTTTGCGCGGCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTATCGTACA
droYak2 chr2R:6066940-6067043 - --TTGG-CGCATTCACGCTGGGCTCTCAAAGTGGTTGTGAAATGCATT-TC----CGCTTTGCGCGGCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTATCGTACA
droEre2 scaffold_4845:4719792-4719897 + TATTGG-CGCATTCATGCTGGGCTCTCAAAGTGGTTGTGAAATGCATA-TC----AGCTTTGCGCGGCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTATCGTACA
droAna3 scaffold_12916:12013650-12013754 + TATTGG-CACATTCCTGCTGGGCTCACAAAGTGGTTGTGAAATGCATT-TC----CATTTTGCCC-GCATATCACAGCCAGCTTTGATGAGCTTAGCGTTATGTATCGTACA
dp4 chr4_group5:1152486-1152589 + TATTGG-CACATTCATGCTGGGCTCACAAAGTGGTTGTGAAATGCATT-TT-----GCTTTGCCC-GCATATCACAGCCAGCTTTGATGAGCTCGGCGTAATGTATCGTACA
droPer1 super_5:5559971-5560074 + TATTGG-CACATTCATGCTGGGCTCACAAAGTGGTTGTGAAATGCATT-TT-----GCTTTGCCC-GCATATCACAGCCAGCTTTGATGAGCTCGGCGTAATGTATCGTACA
droWil1 scaffold_180708:4284676-4284781 + CA-CGA-CACATTCATGCTGAGCTCACAAAGTGGTTGTGAAATGCATTATT----TGCTTTATCCAGCATATCACAGCCAGCTTTGATGAGCTCTGCGTAATGTGAATTGCA
droVir3 scaffold_12723:2960768-2960874 - GATTGG-CACATTCATGCTGCGCTCTCAAAGTGGTTGTGAAATGCATT-TG--AAAGCTTTGCGC-GCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTCACGTACA
droMoj3 scaffold_6500:6908308-6908415 + -ATTGGCCACATTCATGCTGAGCTCTCAAAGAGGCTGTGAAATGCATT-TT-GAAAGCTTTGCGA-GCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTAACGTACA
droGri2 scaffold_15126:521642-521748 + --TTGG-CACATTCATGCTGCGCTCTCAAAGTGGTTGTGAAATGCATT-TTTGAAAGCTTTGCGC-GCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTAAACTACt

dme-mir-2a-2 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:19569475-19569576 - TGT---ACGATGTTGATTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCAACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGGAGACA
droSim1 chr2L:19257527-19257628 - CGT---ACGATGTTGATTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCAACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGGAGACA
droSec1 super_7:3183838-3183939 - CGT---ACGATGTTGATTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCAACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGGAGACA
droYak2 chr2R:6066549-6066650 - CGT---ACGATGTTGATTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCAACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGGAGACA
droEre2 scaffold_4845:4720188-4720289 + CGT---ACGATGTTGATTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCAACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGGAGACA
droAna3 scaffold_12916:12013971-12014072 + GGC---ACGATGTTGCTTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCAACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGGAAACA
dp4 chr4_group5:1153071-1153173 + TAT--TATGATGTTGCTTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCAACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGAAAACA
droPer1 super_5:5560564-5560666 + TAT--TATGATGTTGCTTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCAACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGGAAACA
droWil1 scaffold_180708:4285049-4285146 + --------GATGTTGCTTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCAACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGAAAACA
droVir3 scaffold_12723:2960501-2960597 - --------GATGTTGCTTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCGACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGAAAACA
droMoj3 scaffold_6500:6908893-6908997 + AGAAATTTGATGTTGCTTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCGACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGAAAACA
droGri2 scaffold_15126:521944-522043 + TT-----TGATGTTGCTTATCTAAGCCTCATCAAGTGGTTGTGATATGGATACCCGACGCATATCACAGCCAGCTTTGATGAGCTAGGATAATCAACGGAGAACA

dme-mir-2b-1 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:8258601-8258707 - CAAAATAACT-------AAAAACTTCAACTGTCTTCA-----------------------------------------AAGTGGCAGTGACATGTTGTC----------------------------AACAATATTCATATCACAGCC-A-GCTTTGAGGAGCGTTGCGGTTTTTCT---------CGTCCGGC-----
droSim1 chr2L:8042700-8042806 - CAAAAGAACT-------GAAAACTTCAACTGTCTTCA-----------------------------------------AAGTGGCGGTGACATGTTGTC----------------------------AACAATATTCATATCACAGCC-A-GCTTTGAGGAGCGTTGCGGTTTTTCA---------CGCCCGAC-----
droSec1 super_3:3755253-3755359 - CAAAAGAACT-------GAAAACTTCAACTGTCTTCA-----------------------------------------AAGTGGCGGTGACATGTTGTC----------------------------AACAATATTCATATCACAGCC-A-GCTTTGAGGAGCGTTGTGGTTTTTCT---------CGCCCGCC-----
droYak2 chr2L:10894231-10894336 - GGAAAAAG-T-------GAAAACTTCAACTGTCTTCA-----------------------------------------AAGTGGCGGTGACATGTTGTC----------------------------AACAATATTCATATCACAGCC-A-GCTTTGAGGAGCGTTGCGGTTTTTCT---------CGCCAACC-----
droEre2 scaffold_4929:17167539-17167644 - CGCAATAG-T-------GAAAACTTCAACTGTCTTCA-----------------------------------------AAGTGGCGGTGACATGTTGTC----------------------------AGCAATATTCATATCACAGCC-A-GCTTTGAGGAGCGTTGCGGTTTTTCT---------CGCCCGCC-----
droAna3 scaffold_12916:6006043-6006142 + CAGATTTTTT----TA-GGGAACTGCGACCCTCCTTA-----------------------------------------AAGTGGCGGTGACATGTAGCT----------------------------TTC-ATATTCATATCACAGCTTT-GCTTTCAGGAGCGTTGAGGTTTCTC-----------------------
dp4 chr4_group3:3919027-3919154 + CCCATGGGATACTATAGGAAAGCTGCGACGCTCTTTA-----------------------------------------AAGTGGCGGTGACGTGTTGGT----------------------------AATAATATTCATATCACAGCC-A-GCTTTGAGGAGCGTTGCGGCCCTTCTGAAAATATGCGCCTCATTGGGG
droPer1 super_1:5401823-5401939 + CCCATGGGATACTATAGGAATGCTGCGACGCTCTTTA-----------------------------------------AAGTGGCGGTGACGTGTTGGT----------------------------AATAATATTCATATCACAGCC-A-GCTTTGA-GAGCGTTGCGGCCCTTCTGAA-A----TATGCGCC-----
droWil1 scaffold_180703:495398-495497 + TGTAAATTAT-------AGAATTTATGATAGATTTTT-----------------------------------------AATCATGGT-----------------------TTGAGTCAAAATTAAACAAAAATAGTTTAAATAAAAGC-AAA-TATA-GTAATATTTTTGTTT--------------------T-----
droVir3 Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:5445901-5446049 - TTAACTCCCG----AA-AGTAGGCTCTATT--ATCTAAAGTCGTACATTAAATTTTGTTTAGTATACCTAAATGAATTATATGAAAGTGAAATATTTCCTCAATATTGGCTCGAATC----------AATAGT----GTGTTGCGGTA-A-ACCTTAAAGAAAAATCTG----------------------GAA-----
droGri2 scaffold_15252:13434449-13434542 - TTCAATAGCA----AG-GAAATTCTTGGTTTTCTTTT-----------------------------------------GTTTATCGGGAAAATGTTATA----------------------------TAA-ACCTATATATCTTT----A-TCTC-----------TAGATCTCTCA---------CTATTTGC-----

dme-mir-2b-2 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:19570167-19570279 - ATCGAAAC-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGGCAAAA--------------A
droSim1 chr2L:19258228-19258340 - ATCGAAAC-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGGCAAAA--------------A
droSec1 super_7:3184520-3184632 - ACCGAAAC-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGGCAAAA--------------A
droYak2 chr2R:6067209-6067321 - ATCGAAGC-----------------------------------------AAGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTCTGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGACAAAA--------------A
droEre2 scaffold_4845:4719511-4719623 + ATCGAAGT-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCGATG-CTCAAGACAAAA--------------A
droAna3 scaffold_12916:12013302-12013412 + CC----AC-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCAATG-CTCAAGACAAAA-------------AA
dp4 chr4_group5:1152145-1152298 + ACCCAAAGAACCCAAAGCCTCGGGTCTCGGGGCCCCCGTGTCCGGGCCAAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACACGATG-CTCAAGACAAAA--------------G
droPer1 super_5:5559630-5559783 + ACCCAAAGAACCCAAAGCCTCGGGTCTCGGGGCCCCCGTGTCCGGGCCAAGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACACGATG-CTCAAGACAAAA--------------G
droWil1 scaffold_180708:4283205-4283312 + ---GAGGC-----------------------------------------AGGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCAGCTTTGAGGAGCGACGCAATGGCTCAAGTTA------------------
droVir3 scaffold_12723:2961084-2961203 - AGCGAGAGA----------------------------------GAGAGAAAGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTACTCATATCACAGCCAGCTTTGAGGAGCGACACGATG-CTCAGCACAAAA--------------A
droMoj3 scaffold_6500:6907804-6907929 + GACCAAGA-----------------------------------------GAGAGAATTGTGTCATTCTTCAAAGTGGTTGTGAAATGTTTGC-TTTTTCTGCCTACTCATATCACAGCCAGCTTTGAGGAGCGACACGATG-CTCAGTACAAAATTCAAAACATGAAAA
droGri2 scaffold_15126:521314-521426 + GAGAGAGA-----------------------------------------GAGAGAATTGTGTCCTTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTACTCATATCACAGCCAGCTTTGAGGAGCGACACGATG-CTCAACACAAAA--------------A

dme-mir-2c intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:11243451-11243582 - TGCGT----CG-----------ACGTTACCTCGTAT-CTTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTCTGCATTTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAATGAGCAGCG------ATAGCA-AA-------------------------------------------ATGTG--------------ACC
droSim1 chr3R:10237596-10237727 + TGCGT----CG-----------ACGTTACCTCGTAT-CTTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTCTGCATTTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAATGAGCAGCG------ATAGCA-AA-------------------------------------------GTGTG--------------ACC
droSec1 super_0:10704829-10704960 + TGCGT----CG-----------ACGTTACCTCGTAT-CTTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTCTGCATTTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAATGAGCAGCG------ATAGCA-AA-------------------------------------------GTGTG--------------ACC
droYak2 chr3R:15188346-15188476 + TTCGT----CG-----------ACGTTACCTCGTAT-CTTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTCTGCATTTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAATGAGCATCG------ATAGTA--A-------------------------------------------GTGCG--------------ACC
droEre2 scaffold_4770:10769593-10769723 - TGTGT----CG-----------ACGTTACCTCGTAT-CTTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTCTGCATTTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAATGAGCATCG------ATGGCA--A-------------------------------------------GTGTG--------------ACC
droAna3 scaffold_13340:12827820-12827951 - TGCGTTTAGCG-----------ACGTATCTACGAAT-CTTACTTTCAATGTCATCAAAAAGGGCTGAAG--AGATATTTCTGCATTTGAAGTGTATCACAGCCAGCTTTGATGGGCATTGCAATAAGCCTAGATTCCGATTGAA-----------------------------------------------------------------A-C
dp4 chr2:9824664-9824803 + TGCGT----GCGTGCTTGCGTATCGGCACTTGGTATCCTTACTTTCAGTGTCATCAAAAATGGCTGAAGAAAGATATATTTGCATTTGAAGCGTATCACAGCCAGCTTTGATGGGCATTGCAATGAGCATCG------ATTGCA------------------------------------------------GTT--------------TCG
droPer1 super_0:10660285-10660410 - TGCGT----AT------------CGGCACTTGGTATCCTTACTTTCAGTGTCATCAAAAATGGCTGAAGAAAGATATATTTGCATTTGAAGCGTATCACAGCCAGCTTTGATGGGCATTGCAATGAGCATCG------ATTGCA-GT---------------------------------------------TT------------------
droWil1 scaffold_181089:2143458-2143641 - TGTGT----GT---------------GA-ATTGCGT-CTTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTTTGCATTTGAAGCGTATCACAGCCAGCTTTGATGGGCATTGCAATGAGCATCGTT-----TTGCA-TTTTTCCCCTCATTATTCGCCACACACTCTGGGAGTACCAGCCAACAGAGACAGAGAGCGAGCGAC-
droVir3 scaffold_13047:13335413-13335531 + TGT---------------------------ACATGT-CTTACTTTCAATGTCATCAAAAAGGGCTGA-GAATGATATATCTGCAATTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAAAGGGCAACG-------TAGCAGAA-------------------------------------------AAGTA--------------ACA
droMoj3 scaffold_6540:10568085-10568205 + CATGC-------------------------TTG-GT-CTTACTTTCAGTGTCATCAAAAAGGGCTGA-GAATGATATTTCTGTAATTGAATTGTATCACAGCCAGCTTTGATGGGCACTGCGAAGGGCGAAG-------TAACA-GT-----------------------------------------AACATTA--------------ACA
droGri2 scaffold_14906:4357869-4357995 - TGTGT----GT-----------TTGTGTGTACATGT-CTTACTTTCAATGTCATCAAAAAGGGCTGA-GAATGATATATCTGCAATTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAAAGGGCAATG-------TAGCA-AA-------------------------------------------AAGAG-----------------

dme-mir-3 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:15549085-15549183 - GCCA-C------------CTAA-GGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTC--AAT-------CT----CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCG--------------TCG
droSim1 chr2R:14254518-14254616 - ACCA-C------------CAAA-GGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTCC--AAT-------CT----CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCG--------------TCG
droSec1 super_1:13063812-13063910 - ATCA-C------------CAAA-GGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTC--AAT-------CT----CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCG--------------TCG
droYak2 chr2R:13623606-13623704 + ACCA-T------------CAAA-GGTCCTGATCCTGGGATGCATCTTGTGCAGTCATGTTTC--CAT-------CT----CACATCACTGGGCAAAGTGTGTCTCAAGATCTTGGCCACTTCG--------------ACG
droEre2 scaffold_4845:9749329-9749427 - ACCC-A------------CCAA-GGTCCTGATCCTGGGATGCATCTTGTGCAGTTATGTTTC--TAT-------CT----CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACTTCG--------------ACG
droAna3 scaffold_13266:9731210-9731313 + GCCC-C------------CAACTGGCTACGATCTTGGGACGCATTTTGTGCAGTTATGCACC--AAA-AATA------TATCCATCACTGGGCAAAGTGTGTCTCAGGATCTTGGCCATCTCA--------------ACG
dp4 chr3:12677741-12677846 - ACGA-CGA--------TACCGA-GGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTA--CGTGATCA------TCCTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCA--------------A--
droPer1 super_2:8905820-8905925 + ACGA-CGA--------TACCGA-GGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTA--CGTGATCA------TCCTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCA--------------A--
droWil1 scaffold_180701:1651920-1652025 - TCGA-A------------TTTA-GACCATGATTTTGGGATGCATTTTGTGCAGTTATGTCTTCATGTGATAATTCT----CTCATCACTGGGCAAAGTGTGTCTCATAATTTTGGTAACCATA--------------T--
droVir3 scaffold_12875:4111929-4112038 + AATAAAAATACCAGAATCTCAT-AGCTCTGCTTTTGGGATGCATTTTGTGCGGTTATGTCTG--CCT-------CCAAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCTACC--------------------
droMoj3 scaffold_6496:20936961-20937077 - AACT-C------------TCGC-AGCTCTACTTTTGGGATGCATTTTGTGCAGATGTCTAAC--GAT-------TGGAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGGGGCAACTAGCACAAAGGAGGAGTGTTT
droGri2 scaffold_15112:2109003-2109099 - AATT-T------------TCAT-AGCTCTGCTTTTGGGATGCATTCTGTACAGTAATGTTGA--CTCTTGTA------AAACCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCAA---------------------G

dme-mir-303 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:4260197-4260296 - AAAACC-AAATTGATATCTTGGTTTAGGTTTCAC-AGGAAACTGGTTTAATAACGAAAA----------CTAGTTTCCTCTAAAATCCTAATCAAGACATCATGTGTCGTCG
droSim1 chrX:3275244-3275342 - AAAACC-AATGTGATCTCTTGCTTTGGCATT-AA-AGGAAGCTAGTTTAATTACGAAAA----------CTAGTTTCCTCTAACGTTTCAAACAATACATCATGTGTCGTCG
droSec1 super_4:2464323-2464421 + AAAACC-AATGTGATCTCTTGCTTTGGCTTT-AA-AGGAATCTAGTTTGATTACGAAAA----------CTAGTTTCCTCTAAGGTTTTAAACATTACATCATGTGTCGTCG
droYak2 chrX:4177737-4177835 + GAACTCAAATAATCTGCCTTGCTTAGAATTTTAA-GAGCAAAAAGTTTGTTTACAAAAA----------CTATTTACCCCTAAAATTCTAATCTAGTCAGCATTAT--TTCG
droEre2 scaffold_4690:1630987-1631073 - GAACCA-AAAAATGTGCTTTGTTTAGAATTTTAGCGAGGAATCATTACAAATATGGATGTGAACTTAAAGTACTCACTGCAAG------------------------AAACG
droAna3 Unknown ----------------------------------------------------------------------------------------------------------------
dp4 Unknown ----------------------------------------------------------------------------------------------------------------
droPer1 Unknown ----------------------------------------------------------------------------------------------------------------
droWil1 scaffold_181150:2098814-2098829 + AAA------------------------------------------------------------------------------------------------TCATTCGTCAACT
droVir3 Unknown ----------------------------------------------------------------------------------------------------------------
droMoj3 Unknown ----------------------------------------------------------------------------------------------------------------
droGri2 Unknown ----------------------------------------------------------------------------------------------------------------

dme-mir-304 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:15402977-15403094 + GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TAAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droSim1 chrX_random:4023795-4023912 + GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droSec1 super_73:137399-137516 + GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droYak2 chrX:9589334-9589451 + GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droEre2 scaffold_4690:11631458-11631575 - GTACCAATTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTT-TGAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCGGCATATGCCACA--TT
droAna3 scaffold_12929:2899093-2899202 - -----------ATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGCCATTTGACGGACTCACTTTGCAACTGGAGATTGCTCGAGACTGCGGCATATGCCACAAAGT
dp4 chrXL_group1a:977383-977495 + ------ACTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGGCATTTGACACACTCACTTTGCAACTGGAGATTGCTCGAAACTGCGGCACATGCCACA--TT
droPer1 Unknown ------ACTGTATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATT-TGAGGCATTTGACACACTCACTTTGCAACTGGAGATTGCTCGAAACTGCGGCACATGCCACA--TT
droWil1 scaffold_180702:1593181-1593292 - -------TTGTATCTGTAACATTGATTAATCTCAATTTGTAAATGTGAGCGATTTAAATCCATTCGATGCACTCACTTTGCAATTGGAGATTGCTCGAGATTGCAGCATATGCCACA--TT
droVir3 scaffold_12970:2048738-2048856 + TTGTTAAACTTATCTGCAGCATTGATTAATCTCAATTTGTAAATGTGAGCGATTTTAAAGTATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGATTGCAGCTTATGCCACA--TA
droMoj3 scaffold_6359:3259146-3259264 + GTCCAACTCTTATCTGCAGCATTGATTAATCTCAATTTGTAAATGTGAGCGATTTTTAACTATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGCAGCATATGCCACA--TT
droGri2 scaffold_14853:6952274-6952391 - TTGTTAACT-TATCTGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGATTATTAAGAATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGATTGCAGCATATGCCACA--TT

dme-mir-305 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:7425957-7426059 + GTAT--------CAAC-----------------------------------TGTCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTGTC-TCGTAACCCGGCACATGTTGAAGTACACTCAATATGAGGCGATTTGCAT----------------AC
droSim1 chr2L:7217527-7217627 + GTAT--------CA-C-----------------------------------TGTCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTGTC-TCGTAACCCGGCACATGTTGAAGTACACTCAATATGAGGCGATTTGCAT----------------AC
droSec1 super_3:2941418-2941520 + GTAT--------CAAC-----------------------------------TGTCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTGTC-TCGTAACCCGGCACATGTTGAAGTACACTCAATATGAGGCGATTTGCAT----------------AC
droYak2 chr2L:5473614-5473716 - GTAT--------CAAC-----------------------------------TGTCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTGGC-CCGTAACCCGGCACATGTTGAAGTACACTCAATATGAGGCGATTTGCAT----------------AC
droEre2 scaffold_4929:16344683-16344785 + GTAT--------CAAC-----------------------------------TGTCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTGGT-CCGTAACCCGGCACATGTTGAAGTACACTCAATATGAGGCGATTTGCAT----------------AC
droAna3 scaffold_12916:15334141-15334251 + GTATTTTTGAGAAATA-----------------------------------TGTCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTCCA-CCGTAACCCGGCACATGTTGAAGTACACTCAATATGAGGCGAATGTCAA----------------AC
dp4 chr4_group1:4175881-4175974 + G----------------------------------------------------TCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTGTC-CTGTAACCCGGCACATGTTGAAGTACACTCAATATGTGGCGAAGTTCGT----------------GC
droPer1 super_5:1086315-1086408 - G----------------------------------------------------TCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTGTC-CTGTAACCCGGCACATGTTGAAGTACACTCAATATGTGGCGAAGTTCGT----------------GC
droWil1 scaffold_180772:5257378-5257513 - GATT--------CT-CTTTTTTTTTTATTGGCATTTTTAATTTATTGTTGTTGTCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTCCGTTTGTAACCCGGCACATGTTGAAGTACACTCAATATGTGGCGATCTTCAT------------------
droVir3 scaffold_12963:15419827-15419927 - GTTT--------CA-------------------------------------TGTCTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTGAC-TTGTAACCCGGCACATGTTGAAGTACACTCAATATGCGTTGATTTGCAT----------------TT
droMoj3 scaffold_6500:18399247-18399346 - GTGT--------C----------------------------------------TCCCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTCAG-TGGAAACCCGGCACATGTTGAAGTACACTCAATATGCGGTGATTTGCAGTT--------------GC
droGri2 scaffold_15126:5008540-5008648 + ------------------------------------------------------CTCCCATGTCTATTGTACTTCATCAGGTGCTCTGGTGTCAC-TCGTAACCCGGCACATGTTGAAGTACACTCAATATGCGGTGATTGGCATTTGCTGCGTTTTAATTAA

dme-mir-306 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:16698389-16698503 + GTGAATAG-TTTAAA------AG--------------TCCACTC-G-----ATGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTTGA--CATTTTGGGGGTCACTCTGTGCCTGTGCTG-----CCAGTGGGACATA-ATCTACA----AATA-------------A
droSim1 zdv96e12.b1:525-640 + GTGAATAG-TTTAAA------AG--------------TCCACTC-G-----ATGGCTCAGGTACTTAGTGACTCTCAAT--------GCCTTTGA--CATTTTGGGGGTCACTCTGTGCCTGTGCTG-----CCAGTGGGACATA-ATCTACA----AATA-------------A
droSec1 super_7:345406-345520 + GTGAACAG-TTTAAA------AT--------------TCCACTC-G-----ATGGCTCAGGTACTTAGTGACTCTCAAT--------GCCTTTGA--CATTTTGGGGGTCACTCTGTGCCTGTGCTG-----CCAGTGGGACATA-ATCTACA----AATA-------------A
droYak2 chr2R:4404548-4404662 - GTGAAAAG-TTTTAA------AG--------------TCCACTC-G-----GTGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTTGA--CATTTTGGGGGTCACTCTGTGCCTGTGCTG-----CCAGTAGGACATA-ATCCACA----AATA-------------A
droEre2 scaffold_4845:19768040-19768155 + GTGAATAG-TTTAAG------TG--------------TCCACTC-G-----GTGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTTGA--CATTTTGGGGGTCACTCTGTGCCTGTGCTG-----CCAGTGGGACGCA-ATCAACA---AAATA-------------A
droAna3 scaffold_12916:15864848-15864962 - GTGAAAGT-GCCAGA------AG--------------TCCACTT-G-----GTAGCTCAGGTACTTAGTGACTCTCAAT--------GCATTTGA--CATTTTGGGAGCCACTTTGTGCCTGGGCCA-----TCAGTGCGACTAT-ATCTTCT----ATTA-------------A
dp4 chr4_group3:8443802-8443917 + GTGATTTA-TCTACA------AG--------------CACACTTTG-----CCGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTCGA--CATCTTGAGAGTCTCTCTGTGCCTGCACTG-----GCGGTGGTGCAAC-TGCAACG----ATTA-------------A
droPer1 super_1:9894921-9895036 + GTGATTTA-TCTACA------AG--------------CACACTTTG-----CCGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTCGA--CATCTTGAGAGTCTCTCTGTGCCTGCACTG-----GCGGTGGTGCAAC-TGCAACG----ATTA-------------A
droWil1 scaffold_181132:873705-873839 - GTGACTATACAAAGTGATACGAG--------------TTATCTCTGCCTAAACAGCTCAGGTACTTAGTGACTCTCAAA--------GAATATATATAGACTTGAGAGACGCTCTGTACCTAGACTGTTGTGTCTGCGGAATGTC-AACATCA----TGTG-------------T
droVir3 scaffold_12963:12863192-12863320 - GTGCTG--------A------ACTC-CTCCCGCCCTGCACACCC-C-----GCTGCTCAGGTACTTAGTGACTCTCAATCATCTATTGCTTTGCA--TACCTTGAGGGTCGCTCTGTGCCTGTGCCG-----CCTGTGCTGCACA-ACCAACG----ACGA-------------G
droMoj3 scaffold_6500:7201931-7202062 + ATTCATGA-TGTCC-------AG--------------CACACGC-T-----GCAGCTCAGGTACTTAGTGACTCTCAATCACATATTGCTTTGCA--TACTTTGAGGGTCGCTCTGTGCCTGTGCCG-----CCCGTGTTGCACACAGCCACA----CA---ATTGTGA-ATTCG
droGri2 scaffold_14978:830883-831041 + GTGTTAAA-TGTGGAAAAACCAATCCAATCCG--CTGCACACGT-T-----GCTGCTCAGGTACTTAGTGACTCTCAATTCAACATTGTATTGCA-CGCCTTTGAGGGTCGCTCTGTGCCTGTGTTG-----CACGTGTTGCATT-CACACCATCCGAGTGATTTGTGTCCTTTG

dme-mir-307a intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:5508741-5508858 - AAGT---------TAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC
droSim1 chr2R:4140609-4140726 - AAGT---------TAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAGC
droSec1 super_1:3126041-3126158 - AAGT---------TAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAGC
droYak2 chr2L:18140631-18140748 - AAGT---------TAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC
droEre2 scaffold_4929:8848869-8848986 + AAGT---------TAG--CAGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACGAAAC
droAna3 scaffold_13266:12795467-12795585 - AAGT---------TAG--CAGCCTTTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGACAGAGTATCCACAAGAC
dp4 chr3:14135687-14135806 - AAGT---------TCGGGTCGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGC
droPer1 super_4:1183061-1183180 + AAGT---------TCGGGTCGCA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGC
droWil1 scaffold_180701:3433650-3433765 - ---T---------TAA--CA-CA-TTTTGCCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTTATAATATGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGT
droVir3 scaffold_12875:5789441-5789560 - AAAT---------AAACCGAACA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTAGTT-CGATTTGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAGTATCCACTAAGC
droMoj3 scaffold_6496:24271667-24271782 + AAAC---------TA----AGAA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATTCGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAAGC
droGri2 scaffold_15112:722942-723066 - AAAATAAAAGAACT----AAACA-TTTTGTCTTGCTTTGACTCACTCAACCTGGGTGTGATGTTATTT-CGATTTGGTATCCATCACAACCTCCTTGAGTGAGCGATAGCAGGATAGAATATCCACAAGAA

dme-mir-307b antisense_to_intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:5508724-5508873 + TT--------CACTGGTGCCAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-GCTGC--TAACTTTGCA-------------------------TCGGTTTCACT-
droSim1 chr2R:4140592-4140741 + TT--------CACTGGTGCCAGTTAGCTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-GCTGC--TAACTTTGCA-------------------------TCGGTTTCACT-
droSec1 super_1:3126024-3126173 + TA--------CACTGGTGCCAGTTAGCTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-GCTGC--TAACTTTGCA-------------------------TCGGTTTCACT-
droYak2 chr2L:18140614-18140763 + CT--------CACTGGTGCCAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-GCTGC--TAACTTTGCA-------------------------TCGGTTTCACT-
droEre2 scaffold_4929:8848853-8848999 - TA--------TTTTG----TAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-GCTGC--TAACTTTGCA-------------------------TCGGCTTCACTT
droAna3 scaffold_13266:12795452-12795608 + TTAA------CATT----CTAGTTAGTCTTGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAAGGCTGC--TAACTTTC----------------GTTTCGGAT--TGGGGTTCACTG
dp4 chr3:14135673-14135829 + TA--------TTCTTTTGTCCG---GCTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-GCGACCCGAACTTTTTCTCAGTTTTCA-----------------GTTTTCACT-
droPer1 super_4:1183038-1183202 - TGAATCACTATTCTGTTGTCCG---GCTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-GCGACCCGAACTTTTTCTCAGTTTTCA-----------------GTTTTCACT-
droWil1 scaffold_180701:3433631-3433773 + GTAATAAAT---C---TTTCATTGAACTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATTATAAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGGCAAAAT-GT-GT--TAAG----------------------------------TTCTATAA-
droVir3 scaffold_12875:5789437-5789575 + ---------------------GTTGGCTTAGTGGATACTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCAAATCG-AACTAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-GTT----------------------CGGTTTATTTT---GTCACTTTTGCACT-
droMoj3 scaffold_6496:24271651-24271794 - TC--------TATTGGT-----TTAGCTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCGAATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-TCT----TAGTTTT-----------CT--------T---G--TTGTTTTTATT-
droGri2 scaffold_15112:722926-723081 + TC--------GCCTGTCGCCTGTTTTC-TTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCAAATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAT-GTT---------------TAGTTCTT---TTATTTTTATT--TAATTTTTTCT-

dme-mir-308 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:10103292-10103384 - AACACG--TCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGTTTTGCAATCCAAATCACAGGATTATACTGTGAGATGACCAGCGTG---CCA
droSim1 chr2R:8866656-8866748 - CACACG--TCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGTTTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTG---CCA
droSec1 super_1:7611688-7611779 - CA--CG--TCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGTTTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTG---CCA
droYak2 chr2R:10041132-10041224 - CACACG--TCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCCTTTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTG---CCA
droEre2 scaffold_4845:15739235-15739330 + CACACG--TCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGTTTTGCAAATCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCCGCCA
droAna3 scaffold_13266:5819955-5820045 + CA--TG--TCTCGTCGCCTCGCAGTATATTTTTGTGTTTTGTTTGG-TTTGAAACTCAAATCACAGGATTATACTGTGAGATGCCAAGCGTG---TCA
dp4 chr3:16336992-16337078 - --------TCTTGACGCCTCGCAGTATATTTTTGTGTTTTGTTGTG-TCTGAAACGCAAATCACAGGATTATACTGTGAGATGCTGGGCGTG---CTA
droPer1 super_4:426256-426345 + G---CG--TCTTGACGCCTCGCAGTATATTTTTGTGTTTTGTTGTG-TCTGAAACGCAAATCACAGGATTATACTGTGAGATGCTGGGCGTG---CTA
droWil1 scaffold_180700:1860929-1861010 + AGACTA--TTCTTGCGTCTCGCAGTATATTTTTGTGTTTTGTTCAATTTGTCAACTCAAATCACAGGATTATACTGTGAGCTGC--------------
droVir3 scaffold_12875:17605293-17605383 + AACGCA--T-TCGATGTCTCGCAGTATACTTTTGTGTTTTGTTTAT-TTTGAAAATCAAATCACAGGATTATACTGTGAGTTATCGGCTGTA---GCA
droMoj3 scaffold_6496:11229058-11229148 + AACACA--T-TCGATGTCTCGCAGTATATTTTTGTGTTTTGTTTAT-TATAAAAATCAAATCACAGGATTATACTGTGAGTTATCGGCTGAA---ACA
droGri2 scaffold_15245:14076242-14076330 - CCCACCACTGTCGATGTCTCGCAGTATATTTTTGTGTTTTGTTTATTTTTGAAAATCAAATCACAGGATTATACTGTGAGTTATC------G---CCA

dme-mir-309 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:15549196-15549294 - AA-------GTTT---GGAATAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCA------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACGA--------------C-GACC
droSim1 chr2R:14254629-14254727 - AA-------GTTT---GGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCA------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACGA--------------C-GACC
droSec1 super_1:13063923-13064021 - AA-------GTTT---GGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCA------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACGA--------------C-GACC
droYak2 chr2R:13623487-13623590 + AA--GCAAAGTTT---GGAACAG-CAATTATACGACAAACCTTGTTCTGTTTTGCCA----------------ATTTCCT------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACGA--------------C-GACC
droEre2 scaffold_4845:9749440-9749538 - GA-------GTTT---GGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCT------AG-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACGA--------------C-GACC
droAna3 scaffold_13266:9731105-9731197 + GA-----------------AGAT-C-ATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCT------A--GCAGCACTGGGTAAAGTTTGTCCTATAATCTATAAAAAA--------G-----CCGTCC
dp4 chr3:12677873-12677971 - AA-------CTAT---CTCGGAA-CTATTATACGATAAACTTTGTTCAGTTTTGCCA----------------ACTTGCT------T--GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTAA--------G-----C-GATC
droPer1 super_2:8905688-8905793 + AAAAACGAACTATCTCGGA---A-CTATTATACGATAAACTTTGTTCAGTTTTGCCA----------------ACTTGCT------T--GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTAA--------G-----C-GATC
droWil1 scaffold_180701:1652063-1652174 - A---------TTT---CATATAA-T-ATTATATGATAAACTTTGTTCAGTTTTGCAATCAAAAAATCAAGAAAA-TTCCT------TA-GCATCACTGGGTGAAGTTTGTCTTATAATCTTTAAACTA--------------C-AATC
droVir3 scaffold_12875:4111798-4111897 + TA---------------TAACAA-ATATTATATGGTAAACTTTGTTCAGTTTTGCCA----------------GGCTCTT-TTTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGCAAAAAGA--------------A-CAGC
droMoj3 scaffold_6496:20937092-20937209 - TA-------TACA---AGAACAGAATATTATAAGGTAAACTTTGTTCAGTTTTGCCG----------------GGTTCTATGTTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCG--AAACGAAACAGCAAGGAAAAA-GTCC
droGri2 scaffold_15112:2109131-2109231 - AA-------ATAT---ATAATTA-C-ATTATATGGCAAACCTTGTTCAGTTTTGACA----------------ACTTTGTTTCTGTGCATCATCACTGGGTGAAGTTTGTCGTATAATC--GAAATG-----------------GATC

dme-mir-310 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:16471242-16471360 - AAAAGTGTTT------GC----G-----------------------AAAACATAAACATTTGCAGGGC-GGGTCGTGTGTCAGTGTATTTAT-------------ATCT-TAGC----------TATATTGCACACTTCCCGGCCTTTAAATGTCCA---ATGTTTCAACATT-------------TAAATCT-----
droSim1 chr2R:15132542-15132660 - AAAAGTGCTT------GC----A-----------------------AAAACATAAACATTTGCAGGAC-GGGTCGTGTGTCAGTGTATTTAC-------------TTCT-TAGC----------TATATTGCACACTTCCCGGCCTTTAAATGTCCA---ATGTTTCAACTTT-------------AATATCT-----
droSec1 super_1:14025465-14025583 - AAAAGTGCTT------GC----A-----------------------AAAACATAAACATTTGCAGGAC-GGGTCGTGTGTCAGTGTATTTAC-------------TTCT-TAAC----------TATATTGCACACTTCCCGGCCTTTAAATGTCCA---ATGTTTCAACTTT-------------AATATCT-----
droYak2 chr2R:12724925-12725037 + CTT-------------GC----A-----------------------AATACACAAACATTTGCAGGAC-GGGTCGTGTGGCAGTGTATTGAT-------------TTCT-TAGC----------TATATTGCACACTTCCCGCCCTTTAAATGTCCA---GTGTTTCGACTTG-------------GATATCT-----
droEre2 scaffold_4845:10616419-10616531 - CTT-------------GC----A-----------------------AATACACAAATATTTGCAGGAC-GGGTCGTGTGTCAATGTATTGAT-------------CTCT-TAGC----------TATATTGCACACTTCCCGCCCTTTAAATGTCCA---GTGTTTCAACTTG-------------AATATCT-----
droAna3 scaffold_13266:4133041-4133158 + AATAGC----------------------------------------AAAACATAAACACTTGCAGGAC-GGGGAGCGTGACAATATATATAT-------------TTTA-TAAA--------CATATATTGCACACCTCCCGGCCTATAAGTGTAAA----TGTTCCTACAGG-------------TAAAACTTCTAA
dp4 chr3:8679992-8680133 + ATTATAGTGT------GCGGAGTATGTGCTGTGTAT--T-------TGTACACCAACATTTGTGCGTCTAAGATCTGT-GCAGTATATACAT-------ACATAG-AA-TACAA----------AATATTGCAGACTTCTCAGACTACAAATGTGAA---CTGTCTGGTCTTC-------------AAAAAAT-----
droPer1 super_4:2566796-2566912 + CTGTGCATTT------G-------------------------------TACACCAACATTTGTTCGTCTAAGTTCTGTG-CAGTATATACAT-------ACATAG-TT-TAAAA----------AATATTGCACACTTCTCAGACTACAAATGTGAA---CTGTCTGGTCTTC-------------AAAA--------
droWil1 scaffold_180700:3453399-3453550 + GAAGGAGTCAATGACCAC----A-----------------------AATTTTCAAACATTCTTTGGAC-GGACTT-GT-CAAATATGTTTGG-------ATATAAAATT-CAACAATTGGACAACATATTGATCAAAACCGGGCCAAAAATTGTTGG---AAAATTCTTCAAAGTTGTTGGACTTGACAATTT-----
droVir3 scaffold_12875:13668721-13668866 - AAAACAATTT------GG----TAAATACTGCGCATAGCCTTGCGCCTTATGTAATCATTTTTAGGCC-GTGCTCTGTGTGAATATGTTTTT-------------AACTATAAT----------CATATTGCACATCTCCCGGCCTATAAGTGTAGATGCATAATTCATCAAA-------------TATAAAT-----
droMoj3 scaffold_6496:9090283-9090389 - TGT--------------------------------------------------ATCCATTTTTAGGCC-GTGCTATGTGACAATATGTATTT-------AAATTG-TA-TTTAT----------CATATTGCACATCTCCCGGCCTACAAGTGTAAATGCACAATTCAACT----------------ATGTAC-----
droGri2 scaffold_15245:17564471-17564548 + C--------------------------------------------------------------AGGAT-GGAAGCTGTGACAATATGTAGGTTTTAATTAATTTA-TA-TTTCA----------TATATTGCACACCTCCCGGCCTATAAATG---------------------------------------------

dme-mir-311 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:16471367-16471480 - TGAAAA-----------------A-TCG---AAATTTCTAGATCATTTTTCGGA--CGGTATATGGGTTAATATTTCAT------------TTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCA-A--GAATT-------AACATC-----------------------------------GAA---AAG
droSim1 chr2R:15132667-15132782 - TGAAAA-----------------A-TCG---AAATTTCTAGATAATTTTTCGGA--CGGTATATGAGTCAATATTTTCT----------TTTTTTCGAATATATTGCACATTCACCGGCCTGAAAATATCA-A--GAATT-------AGCATC-----------------------------------GAA---AAA
droSec1 super_1:14025591-14025696 - GAAA------------------------------TTTCTAGATAATTTTTCGGA--CGGTATATGAGTCAATGTTTTCT------------TTTTCGAATATATTGCACATTCACCGGCCTGAAAATATCA-A--GAATT-------AGCATC-----------------------------------GAA---AAA
droYak2 chr2R:12724807-12724923 + TTTAAA-----------------AA-TATCTCACTTTCTAGATAGTTTTGCGGA--CGGTATCTGCGTCAATATTTCCT------------TGTTAGAATATATTGCACATTCACCGGCCTGAAAATATCA-A--GGACT-------TGCATC-----------------------------------GAA---AAG
droEre2 scaffold_4845:10616532-10616644 - TTGAAA-----------------C-CCC---TA-ACCCTAGATAGTTTTTCGGA--CGGTATCTGCGTCAATATTTCCT------------TGTTAGAATATATTGCACATTCACCGGCCTGAAAATATCA-A--GGACT-------TACATC-----------------------------------AAA---AAG
droAna3 scaffold_13266:4132915-4133034 + AGAGAA-----------------A-TAT---TTGTTGCCAGATTATCTTCAGGA--CGGTATTTGTGTCAATATGGATA-------------TTTCAAACATATTGCACTTATACCGGCCTGATGATCTCC-G--GCGCTCGTCATCTGTGAC-----------------------------------TAA---AAG
dp4 chr3:8679876-8679985 + CATCGA-----------------GC-TGCTTTGATTTGTA-----------GGC--CGTGGTTCTTGCAAATACGGATT---------------CATAACGTATTGCACTAGCCCCGGTCCAAAAAACAAT-A--GCAA-CGCC---GGCAAC-----------------------------------AGCAAAGTA
droPer1 gnl|ti|732560583:591-697 + CATCGA-----------------GC-TGCTTTGATTTGTA-----------GGC--CGTGGTTCTTGCAAATACGAATT---------------CATAACGTATTGCACTAGCCCCGGTCCAAAAAACAAT-A--GCAA-CGCC---GGCAAC-----------------------------------AGC---AAA
droWil1 scaffold_180700:3453290-3453392 + TAAT-------------------------------TTATA-----------GGCTTCGGGGT-TGTTGCAAAATGGTTTATTCT-----AATAACTCCCCATATTGCACCTTTTCCGGCCTCTAAATTAACTTTTG-----------AACATCCCG--------------------------------GGT---GGG
droVir3 scaffold_12875:13668876-13669002 - GAAAAA-----------------C-TAG-TGCGTCCGCATGACCATTTTAAGGA--CGGTATTTGTGACAATATGTGCAG-TTAAATCAATTTGTTTAGCATATTGCACATCTCCCGGCCTAAAAATGAAC-C--GTGCT-------CTCTTC-----------------------------------GAT---ATA
droMoj3 scaffold_6496:9090405-9090568 - AAACGAAAAATGTCAAATTTTCAGC-TG---------------CGTTTGCAGGA--CGGTATTTGTGACAATATGAATTATTGAAATCAATTTATTCAGCATATTGCACATCTCCCGGCCTATAAAACAGT-T--GTGA-GCCC---GTCGAT---TTAAATGATTTGTGTATTTAAAATAAATTTTCACC-----A
droGri2 scaffold_15245:17564385-17564474 + AAAT-------------------------------TTGCAGTTCGTGTTTAG------T-----------GTTTTTTCC------------CGCTTAAGCATCTTGCAAATTATATGGCTTGCAGTTATCT-G--CATTA-------ACCATT-----------------------------------TTC---AGG

dme-mir-312 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:16471546-16471641 - AATTAAGTT-TGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATT--TTTTAACTAGTATTGCACTTGAGACGGCCTGATTA--CTTTA-----AAACGAATC
droSim1 chr2R:15132834-15132929 - AATTAAGTT-TAAAGCGTTTTGGTTCGTCACAAGGGCAATTCTGCATT--TTTAAACTTGTATTGCACTTGAGACGGCCGAATTA--CTTTA-----AAAAGAATC
droSec1 super_1:14025748-14025843 - AATTAAGTT-TAAAGCGTTTTGGTTCGTCACAAGGGCAATTCTGCATT--TTTAAACTTGTATTGCACTTGAGACGGCCGAATTA--CTTTA-----AAAAGAATC
droYak2 chr2R:12724685-12724781 + AATTGCGTT-TGAAGCGCTTCGGTTCGTCCCAGGAGCAATTCTGCACTA-TTAAAGCTAGTATTGCACTTGAGACGGCCGGATTA--CTTTT-----AAACGAATC
droEre2 scaffold_4845:10618147-10618242 - AATTAAGTT-TGAAGCGCTTCGGTTCGTACCAGGAGCAATTCTGCATT--TTTAAGCTAGTATTGCACTTGAGACGGCCGGATTA--CTTTT-----AAACAAAAC
droAna3 scaffold_13266:4132676-4132765 + TCTACAAT--------TTTCCGGTGCGTCTCTAGTGCAACTCTTGGTTT-TTTATACAAGTATTGCACTTGAGACGGCCGAAATA--TAGTG-----GATCTAAGC
dp4 chr3:8679756-8679828 + G---------------------------------GGCAATACTGTGTTGTATTTCACCAGTATTGCACACCCACTGGCCTGAAAGTGCCTACTGCTGGGTTCAACA
droPer1 gnl|ti|732455623:23-94 + G---------------------------------GGCAATACTGTGTTGTATTTGAACAGTATTGCACACCCACTGGCCTGAAAGTGCCTACTGCTGGGTTCAA--
droWil1 scaffold_180700:3453141-3453235 + CATAAACTCGAAAATTTTTTAGGTTCGTTTAGTCTGCAAATT-GTAAT--ATACGAAAATAATTGCACACTTCACGGCCGGAAAA--GTTCA-----AGTTAAACA
droVir3 scaffold_12875:13669041-13669063 - AGCTATATT-T-----------------------------------------------------------------------------TTCA-----GGCCGTGTC
droMoj3 scaffold_6496:9090603-9090622 - GTCTGCAAT-TTAAGCTTCTT-------------------------------------------------------------------------------------
droGri2 scaffold_15245:17564268-17564358 + AAGCAAATC-TTCAGTTTTTCGGCTGTGGTTAGTGTCAATTCTTTTT---ATTTGACAAGCATTGCACTCTTCACGGCCGGATAA--AT---------GAGGGTCT

dme-mir-313 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:16471680-16471780 - TCGTTCT--AGCCAACAA---TTTTCTGCTGCGGATGGGGGCAGTACTG--------------------------TTTTTTTAACATT--GAGTATTGCACTTTTCACAGCCCG-----AAAATGTTAGCAACTGC-CTT
droSim1 chr2R:15132971-15133071 - TCGATCT--AGCCAACAA---TTTTCTGCTGCGCATTGGGGCACTACTG--------------------------TTTTTTTTAAATT--GAGTATTGCACTTTTCACAGCCTT-----AAAATGTTAGCAACTGC-CTA
droSec1 super_1:14025885-14025985 - TCGATCT--AGCCAACAA---TTTTCTGCTGCGCATTGGGGCACTACTG--------------------------TTTTTTTTTAATT--GAGTATTGCACTTTTCACAGCCTT-----AAAATGTTAGCAACTGC-CTA
droYak2 chr2R:12724540-12724640 + TCTACGT--AGCCAACAA---TTTTCGGCTGTGGATTGGGCTAGTACTG--------------------------TGATTTTAGCATT--AAGTATTGCACATTCCCCAGCCTG-----AAAGTGTTAGTAACTGC-CAA
droEre2 scaffold_4845:10618281-10618381 - TCGATGT--AGCCAACAA---TTTTCGGCTGTGGAGTGGGCTAGTACTG--------------------------TGATTTTAACATT--GAGTATTGCACATTCCCCAGCCTG-----AAAGTGTTTGCATTTGC-CAA
droAna3 scaffold_13266:4132526-4132623 + TTT--GT--AGTCAGCAT---TTCCAGACTGTGGTTTGGGCAGATACTA--------------------------CATTTT--AGGAT--CAGTATTGCACATTCCCCAGCCTG-----GAAACGCTTGCGACAGA-CCT
dp4 Unknown --------------------------------------------------------------------------------------------------------------------------------------------
droPer1 super_4:2566453-2566554 + TTCGTGTTCGGTGGATAC---CTTCAAGCTGGGGGATGGG-CAATACTG--------------------------TGTTGTATTTGAA--CAGTATTGCACACCCACTGGCCTG-----AAAGTGCCTACTGCTGG-GTT
droWil1 scaffold_180700:3452993-3453102 + TTAATTATTTGTCCAAATTTAGTTCTGGCTGCGGTTTGTGCAAATTACT---T----------------------ATTTT--TTTGTA--AAGTATTGCACAACCTACAGCCTGGCACTAAATGGAGAAAAATCAT-CAA
droVir3 scaffold_12875:13669100-13669187 - T---------------------TTTCGGCTGTGGTCAGTGTCAATTCTT--------------------------TTTTTTTATTTTTACAAGTATTGCACTTTTCACGGCCGG-----AAAAATTGAGATTCCATTTAA
droMoj3 scaffold_6496:9090655-9090750 - TTT--TT--TGCATTCGT---TTTCCGGTTGTGAATTGTGTCAATTCTT--------------------------TTTATTTTAC-----AAGTATTGCACTTTTCACGGCCGG-----AAAAAGGATAAAATATT-TAA
droGri2 scaffold_15245:17564118-17564229 + TCATTAT--CCCGAACAA---CATCATTCCGCGCTCGGCTTTAGAATTTGTTCCTTATTTTGTGAGGATAATTTACAATTC--GAAGA--TAATAT-----------TGGC-AG-----GATATG-TTACAGTTCC-TCT

dme-mir-314 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:11766097-11766216 + TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAACTTACCTAGTTGAGGAAA-----ACTCCC-ATG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droSim1 chr3L:11131600-11131719 + TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AGTCCC-GTG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droSec1 super_0:3951120-3951239 + TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AGTCCC-GTG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droYak2 chr3L:11794902-11795021 + TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AACCCC-ATG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droEre2 scaffold_4784:11743709-11743828 + TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAG-----AATCCC-ATG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droAna3 scaffold_13337:6019503-6019620 + TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AATC-A--GT-TTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
dp4 chrXR_group8:4342117-4342235 - TGGTCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----ACTC-CGA-A-ATGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAAATCGCATT
droPer1 super_29:576219-576337 - TGGTCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----ACTC-CGA-A-ATGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAAATCGCATT
droWil1 scaffold_180949:2570151-2570270 - TAGTTCGTACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AATTCA-ATG-TTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droVir3 scaffold_13049:23988146-23988266 + TGGTTCGTGCTCTTATCGTAACTTGTGTGGCTT-GAATGTACCTGGTTGAGGAAC----GAATTCA-ACGTTTGGATTTTGTTGCCTTTGGTATTCGAGCCAATAAGTTCGGCCACCGGTTCACATT
droMoj3 scaffold_6680:18619757-18619881 + TAGGTCGGGCTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTCGTCGAGCGAAAAGCGAATTCA-TTG-TTGGATTTTGTTGCTCTTGGTATTCGAGCCAATAAGTTCGGCAACCAGTTCGCATT
droGri2 scaffold_15110:9705224-9705329 - TATTTCCAGCTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTGGCTAAGGAAA--------------G-TTGGATTTCC------TAGGTATTCGAGCCAATAAGTTCGGCAGCGGGTTCGCATT

dme-mir-315 antisense_to_intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:18854056-18854169 + GAGTTCCTTC------------ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTG-TTTACC---AGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCAACGCTG-----
droSim1 chr3L:18159364-18159477 + GAGTTCCTTC------------ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG-TTTACC---AGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTCTCATCGCTG-----
droSec1 super_19:820227-820338 + GAGTTCCTTC------------ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG---TACC---AGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCATCGCTG-----
droYak2 chr3L:21787014-21787126 - GAGTTCCG-C------------ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTA-TTTAAC---AGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACATTG-----
droEre2 scaffold_4784:18670595-18670707 + GAGTTCCTAC------------ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCT-ATTA-TCTAAC---AGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACGCTG-----
droAna3 scaffold_13337:18585473-18585582 - GAGCTCCTAA------------ATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAA-ATTATT---AGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAAC---------
dp4 chrXR_group6:4103840-4103943 - G---------------------CCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA-TTAACC---AGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACATT------
droPer1 super_9:2393048-2393151 - A---------------------CCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA-TTAACC---AGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACATT------
droWil1 scaffold_180955:104826-104946 + GGTTTGCTTATTTGCCCA---TCTGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTACTTTATC---AGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGAGCCTGTCAACA--------
droVir3 scaffold_13049:18083575-18083698 - CATTTCCTTCCTACCTCACAAAACGGACGCCTATATCATTTTGATTGTTGCTCAGAAAGCCCTG--CA-TTCAAT---ACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCCTAACTACGTTT-----
droMoj3 scaffold_6680:23648550-23648660 - ----------------------ACGGACCCTTATATAATTTTGATTGTTGCTCAGAAAGCCCGTAA---TTTAACTTAACATGGCTTTCGAGTAATAATCGAAACCAAATAAGGCATCCAAACATCATTTTGTCA
droGri2 scaffold_15110:24135484-24135597 - CAGCCAACTACT----------ATGGACGCTCATATAATTTTGATTGTTGCTCAGAAAGCCTTT--CA-CTTGAC---ACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCCTAACTACAATT-----

dme-mir-316 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:21661799-21661917 - GAAAA--------------------------------------------GTGGATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTCAGCGATT------------------------------TGCA------------------------------------
droSim1 chr3L:21004826-21004944 - GAAAA--------------------------------------------GTGGATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCCCAGCGACT------------------------------TGCA------------------------------------
droSec1 super_11:1581867-1581985 - GAAAA--------------------------------------------GTGGATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCCCAGCGACT------------------------------TGCA------------------------------------
droYak2 chr3L:18849495-18849613 + GAAAA--------------------------------------------GTGGATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGACCAGCGATT------------------------------TGCA------------------------------------
droEre2 scaffold_4784:21318808-21318933 - GAAA-------------------------------------TACACAAAGTGGATACAC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCATTTCAACAACGACAGGAAAGGGAAAAAGGCGTATTCACTATGAGTTTGGCCAGCGACT------------------------------TGCA------------------------------------
droAna3 scaffold_13337:3985740-3985858 - CAAGA--------------------------------------------ACATATATTC-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTAATTCAAACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGGTCAACATTT------------------------------CGTC------------------------------------
dp4 chrXR_group6:4548558-4548677 + GTAAA----------------------------------A-TATACAAAG-----ATC-AAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGATCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTATCCAACAA---------------------------------ACA------------------------------------
droPer1 super_9:2845596-2845715 + GTAAA----------------------------------A-TATACAAAG-----ATC-AAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTCGATCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTATCCAACAA---------------------------------ACA------------------------------------
droWil1 scaffold_180698:1092691-1092806 + ATATA--------------------------------------------ATGTATGTAT-AAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATTTAACTAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTAATCAACAAAT------------------------------T---------------------------------------
droVir3 scaffold_13049:24266823-24266971 + ATATC--------------------------------------------TTTGATCTATAAAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATT-GAGCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAATTTGTTCAACCAATCTGTTTAAACACCTATTCAATGAAAAGAAATGCT------------------------------------
droMoj3 scaffold_6680:18891183-18891347 + GATCTA--ACTGAATCGATTTT--------------------------------TATATAAAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGACGTTTTATT-GAACAACGGCAGGGAAGGGAAAAAGGCGTATTTACTATGAATTATTTCAACGATA------------------------------TAAAAATTTCTATTAAAATAATAATCAGAGTGAGAGAGGG
droGri2 scaffold_15110:9482044-9482193 - TACCAGAGACTAAA-CATTTTGTGTATAAGTATTGTATGATTAAGCAATC-----TTC-AGAGTTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTTATT-GAGCAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAATGTAATCAACAA------------------------------------------------------------------------

dme-mir-317 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:5916833-5916954 + AA----GC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGG-CATCCT-TGCTGCACCA-------------CA-
droSim1 chr3R:15459127-15459249 - AA----GC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGG-CATCCTTTGCTGCTCCA-------------CA-
droSec1 super_0:15996573-15996694 - AA----GC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGG-CATCCT-TGCTGCTCCA-------------CA-
droYak2 chr3R:9963959-9964079 + AA----GC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGG-CGTCCT-TGCTGCTCCAG---------------
droEre2 scaffold_4770:15683457-15683577 - AA----GC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGG-CGTCCT-TGCTGCTCCAG---------------
droAna3 scaffold_13340:6479980-6480089 + AA----GC------TCATTT---G-------------TGTGCATCGGCTGCTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TTG-CATCCT-TTC-----------------------
dp4 chr2:5029980-5030116 - AA----GC---------TCTTCCGTGTCTCGTGTCTCTGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATATGGTGCAAGCAAGTGAACACAGCTGGTGGTATCCAATGGCCGTT--CTG-CAACAA-TGCAACATCAGC---------AACAA
droPer1 super_19:735499-735629 - AA----GC---------TCTTCCGTGTCTCGTGTCTCTGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATATGGTGCAAGCAAGTGAACACAGCTGGTGGTATCCAATGGCCGTT--CTG-CAACAA-TGCAACATCAG---------------
droWil1 scaffold_181089:11180051-11180176 - AA----GCTTTCTAGATTCTTC---------------TGTGCAACTGCCACTGGGATAC-ACCCTGTGCTCGCTTTGAATATTGTGCAAACAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTTTTG-CATCCA-TGCAACACCA----------------
droVir3 scaffold_12855:2698510-2698638 - AA----GC---------TTTTTC--------------AGTGCAATTGCCGCTGGGATAC-ACCCTGTGCTCGCTTTGAATT--GTGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT---GGCAGCCAA-TGCAACAATTGCAACAACTGCAACA-
droMoj3 scaffold_6540:11898843-11898966 - GAGTAAGC----------TTTCT-----------CTCTGTGCAATTGCCGCTGGGATAC-ACCCTGTGCTCGCTTTGAGTT-TATGT-TGCAAGTGAACACAGCTGGTGGTATCCAGAGGCCGTT---GACAGCCAA-TGCAACAACAGC---------A--A-
droGri2 scaffold_14624:2253109-2253242 + AAA-AAGC---------TTTTCGC-------------TGTGCAATTGCCACTGGGATATTGCCCTGTGCTCGCTTTGAATATTGTGTAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGG-CGCACA-TGCAACAACAACAACAAGAGCA--A-

dme-mir-318 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:6234009-6234106 + G-------TCCTT--CGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACAC-T--TCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCA
droSim1 chr3R:15159142-15159239 - G-------TCCTT--CGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACAC-T--TCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCA
droSec1 super_0:15709308-15709405 - G-------TCCTT--CGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACAC-T--TCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCA
droYak2 chr3R:10262524-10262621 + G-------TCCTC--CGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCGCAC-T--ACAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCA
droEre2 scaffold_4770:15383893-15383990 - G-------TCCTC--CGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACAC-T--TCAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCA
droAna3 scaffold_13340:867198-867296 - G-------TCCTC--CGGTTTCAATTTGTGGGATACACACGGTTCAGTTGTGTCACTTTT--GCGAGCATCACTGGGCTTTGTTTATCTCATAAGACTGAAATTTGTTCA
dp4 chr2:7233334-7233438 - CGTGTGCCTCTTT--TGGTTTCAATTTATGGGATGCACCAAGTTCAGTTTTGTCACAT-T--TCGAGCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTGATTCA
droPer1 super_0:1094016-1094113 - C-------TCTTT--TGGTTTCAATTTATGGGATGCACCAAGTTCAGTTTTGTCACAT-T--TCGAGCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTGATTCA
droWil1 scaffold_181108:652-751 + G-------TCAGA--CGGTTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCGCAT-TCCACGAGCATCACTGGGCTTTGTTTATCTCATAAAGGAGAAATGAATACA
droVir3 scaffold_13047:1194317-1194415 + T-------GATTT--GGATTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCAGATGT--CCAAGCATCACTGGGCTTTGTTTATCTCATAAGAGTGAAATTTGTTCA
droMoj3 scaffold_6540:5225327-5225427 + G-------TGATTAAGGATTTCAATTTATGGGATACACTAAGTTCAGTTTTGTCAGATGT--CCAAGCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTTGTTCA
droGri2 scaffold_14906:5077291-5077389 - G-------ATTTC--GGATTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCAGATGT--CCAAGCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTAGTTCA

dme-mir-31a intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:13671285-13671406 - CGATC---------------GTAT--ATC---AACTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAGCGAG---ATC------------------------------------------
droSim1 chr2R:12409842-12409963 - CGATC---------------GTAT--AGC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAGCGAG---ATC------------------------------------------
droSec1 super_1:11168758-11168879 - CGATC---------------GTAT--AGC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAGCGAG---ATC------------------------------------------
droYak2 chr2R:15512007-15512128 + CGATC---------------GTAT--AGC---ACCTCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTT--GAAGATCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACACTCAGCGAG---ATC------------------------------------------
droEre2 scaffold_4845:7899182-7899303 - CGATC---------------GTAT--AGC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGCTTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAGCGAG---ATC------------------------------------------
droAna3 scaffold_13266:10515593-10515725 + CGATC---------------ATAT--AGCCAAGAATCTGTTGTT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAACGAATTT--TGAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAACAAG---ATCGAAACTCT----------------------------------
dp4 chr3:16483204-16483318 - CG---------------------T--ACC---GCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGATCTT--TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACAGTCAACA-G---ATC------------------------------------------
droPer1 super_4:278992-279106 + CG---------------------T--ACC---GCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGATCTT--TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACAGTCAACA-G---ATC------------------------------------------
droWil1 scaffold_180700:4557862-4557981 - CA-TC---------------ATCATTAT-----CATCTGTTTTTCGAATTGGCAAGATGTCGGCATAGCTGATA-------AT-ATTTTTAGAAAAGCGCTATGCTGCATCTAGTCAGTTTATTCAATAGAGCAATCGACAATATTATC------------------------------------------
droVir3 scaffold_12875:16937652-16937767 - ---TC---------------GCCT--C-----GCATCTGTTGTT-CAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGCATTT--TTATAGCGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACAATCAACAAA---A--------------------------------------------
droMoj3 scaffold_6496:11065442-11065572 + CTATATTTATAAATATTTCGGTTT--ATC---GCATCTATTGTT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTCAAAGCGCAT-T--GCATAGCGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACAGTCAACA--------------------------------------------------
droGri2 scaffold_15245:16476618-16476778 - CTCTC---------------GCGA--TTC---TCATCTGTTGGT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGCATCT---TATAGCGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACACTCAACA-T---ATCCATAC-CTGAAATGCTTAGAAACTTGGAGTATCTACGGATTA

dme-mir-31b intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:8887323-8887479 - TCGCTCCACGT-----------TAGACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CACAGCGGATCGAACATTTTATCGTCCGAAAAA---------------------------ATGTGAT---TATT---TTT--GAAAA------GCGGCTATGCCTCATCTAGTCAATTGCATTACTTTGACTCTATCAGCGTTG
droSim1 chrX:7083953-7084109 - TCGCTCCTCGT-----------TAGACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CACAGCGGATCGAGCCTCTTATCGTCCGAAAAA---------------------------ATGTGAT---TATT---TTT--GAAAA------GCGGCTATGCCTCATCTAGTCAATTGCATTACTTTGACGCTATCAACGTTG
droSec1 super_34:250169-250325 - TTGCTCCTCGT-----------TAGACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CACAGCGGATCGAGCCTCTTATCGTCCGAAAAA---------------------------ATGTGAT---TATT---TTT--GAAAA------GCGGCTATGCCTCATCTAGTCAATTGCATTACTTTGACGCTATCAACGTTG
droYak2 chrX:12425680-12425836 + TTTCTCCTCGT-----------TAGACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CACAGCGGATCGAGCCTTTGATCGTCCGAAAAA---------------------------ATGTGAA---TATT---TTT--TAAAA------GCGGCTATGCCTCATCTAGTCAATTGCATTACTTTGACTCTATCAGCGTTG
droEre2 scaffold_4690:6225295-6225451 + TCGCTCCTCGT-----------TAGACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CACAGCGGATCGAGCCTCTTATCGTCCGAAAAA---------------------------ATGTGAA---TATT---TTT--GAAAA------GCGGCTATGCCTCATCTAGTCAATTGCATTACTTTGACACTATCAACGTTG
droAna3 scaffold_13047:712420-712562 - AT---CCTCG------------AAGACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CACAGAGGATCGAGCGAGTCATCGACCGAGACG---------------------------A----------------ATT--CCAAA------GCGGCTATGCCTCATCTAGTCAATTACATTACTTTGACACTTTCCACGAGG
dp4 chrXL_group1e:8162325-8162445 - GTGT-CCT----------------GACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CAAAA-------------------------------------------------------A---GAAGATGA-----TTT--GAAAT------GCGGCTATGCCTCATCTAGTCAATTGCATTCATTTGATTCTATCAACGATG
droPer1 super_13:404315-404435 + GTGT-CCT----------------GACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CAAAA-------------------------------------------------------A---GAAGATGA-----TTT--GAAAT------GCGGCTATGCCTCATCTAGTCAATTGCATTCATTTGATTCTATCAACGATG
droWil1 scaffold_181150:794468-794638 + TCACGAAT-----GTG---ATGAAAACAACTAGTGGATTTGGCAAGATGTCGGAATAGCTGAAAGTCACACAAAATCA----------------------TAAAATGTTTGCCGTTTTGTTATTGT-TGTGAA-----T-TTTATTGATTTCAAAAATTACGGCTATGCCTCATCTAGTCAATTGCATTAGTTTGATTAAGTCAAC--TG
droVir3 scaffold_12726:2775742-2775905 - TTGCAGCACATATATATAAATATAGACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CACAAAG--TC----------------------ATA-AAT----CCAGAATTTCTATT-T-TGTGTA-----TTTTTATTGAGTACA------GCGGCTATGCCTCATCTAGTCAATTGCATTCATTTGACAAAAGCAACG---
droMoj3 scaffold_6473:5711141-5711289 + GTGGTCCTCG----------------CAAATAATGAATTTGGCAAGATGTCGGAATAGCTGAGAG-CACAAA-TATC----------------------ATAGAAT----CCAGAATTTATATT-T-TGTGTA-----T-TTTATTGAGTACA------GCGGCTATGCCTCATCTAGTCAATTGCATTCATTTGACAGCAGCAAC---C
droGri2 scaffold_15203:6378282-6378443 - TCGACCACCAT--TTGCACCCGCAAACAAATAATGAATTTGGCAAGATGTCGGAATAGCTGACAG-CACAA--GATC----------------------ACA-AAT----CAAGAAACTTTATT-T-TGTGTA-----TTTTTATTGAGTACA------GCGGCTATGCCTCATCTAGTCAATTGCATTCATTTGAC---ATCAACAACG

dme-mir-33 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:19791046-19791174 + CTG-----AGTGCCACCAGACTCT--------TCCT-CTGGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGTC-------------------CCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACATA-CAAC------------GCCG---AATG------
droSim1 chr3L:19083102-19083230 + CTG-----AGTGCCACCAGACTCC--------TCCT-CCGGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGTC-------------------CCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACACA-CAAC------------GCCG---AATG------
droSec1 super_29:452742-452870 + CTG-----AGTGCCACCAGACTCT--------TCCT-CCGGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGTC-------------------CCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACACA-CAAC------------GCCG---AATG------
droYak2 chr3L:20771315-20771443 - CTG-----AGTGCCACCAGACTCT--------TACT-CCAGAGATGTCACGAAGGTGCATTGTAGTCGCATTGTCTGTC-------------------CCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACAAA-CAAC------------GCCG---AGTG------
droEre2 scaffold_4784:19550563-19550691 + CTG-----AGTGCCACCAGACTCT--------CACT-CCAGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGTC-------------------CCAATT---GC-TTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACAAA-CAAC------------GCCG---AGTG------
droAna3 scaffold_13337:19456783-19456919 - CCG-----AATACCAGCAGACACTATACACCCGCCC-TCGGAGATGTCACGCAGGTGCATTGTAGTCGCATTGTCTGTC-------------------CCACTT---GC-TCCAGGCAATACAACTGCAGTGCAAGCTCTGTGCATTTCACAAA-CAAC------------GCCA---ACTT------
dp4 chrXR_group6:5913809-5913939 + AAA-----AACCAAACCAAACACT-----------C-CCGGAGATGACACGCAGGTGCATTGTAGTCGCATTGTCTGTC-------------------CATCTT---GATTTCAGGCAATACAACTGCAATGCAAGCTCTGTGCATTTCATAAATCAAC------------GCCGTCCAATG------
droPer1 super_47:413986-414116 + AAA-----AACCAAACCAAACACT-----------C-CCGGAGATGACACGCAGGTGCATTGTAGTCGCATTGTCTGTC-------------------CATCTT---GATTTCAGGCAATACAACTGCAGTGCAAGCTCTGTGCATTTCATAAATCAAC------------GCCGTCCAATG------
droWil1 scaffold_180698:8572488-8572628 + CGG-----AACCTAAACAAAT------------------TGAAGTTACACGAAGGTGCATTGTAGTCGCATTGTCTGTGCTCCAAAAAAAAAAAACCCCCAGTT-T-CTATTCAGGCAATACAACTGCAGTGCAAGCTTCGTGTGACTTATAAG-CAAC------------GGCA---AATA------
droVir3 scaffold_13049:22941104-22941227 - CCA-----AAATC----CGACA-----------TCT-CTGGAGCTGTTACGGAGGTGCATTGTAGTCGCATTGTCTGTC-------------------TCAAAT-TTGC-CCGCGGCAATACAACTGCAGTGCAAGCTCCGTGCAGTTCACACG-CAAC------------GTCG---GAAG------
droMoj3 scaffold_6680:17552824-17552948 - CAG-----CATTCCGACA---------------TCT-TTGGAGCTGTGACGGAGGTGCATTGTAGTCGCATTGTCTGTA-------------------TCCTTTATTCT-CTGCGGCAATACAACTGCAGTGCAAGCTCCGTGCAGTTCACTCG-CAAC------------GTCG---GACA------
droGri2 scaffold_15110:18214439-18214590 - CTCTGCACAGTTAGGGCAGACA-----------TCTCCAGGAGCTGTCACGAAGGTGCATTGTAGTCGCATTGTCTGTC-------------------CAAAAA-TTGC-ATGCGGCAATACAACTGCAGTGCAAGCTCCGTGCAGTTCACTAG-CAACAACTCTTTGATCGCTG---ATCGATCTGA

dme-mir-34 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:5926643-5926771 + CAAACAA-GTATTC------TTAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACAA----TTCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAA----------CTTATAA---
droSim1 chr3R:15449371-15449500 - CAATCAAAGTATTC------TCAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACAA----TTCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAA----------CTTATGG---
droSec1 super_0:15986833-15986962 - CAATCAAAGTATTC------TCAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACAA----TTCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAA----------CTTATAG---
droYak2 chr3R:9974454-9974582 + CAATCAA-GTATTC------TCAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TT--ATTGC-CGTTGACAA----TTCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAA----------CGTACTC---
droEre2 scaffold_4770:15673299-15673427 - CAATCAA-GTATTC------TCAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TC--ATTGC-TTGTGACAA----CTCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAA----------CGTACTC---
droAna3 scaffold_13340:6489967-6490093 + TAATTCA-GTTACC------TCAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCTGG-------TGCTCGTTGGCAATTAATTCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAGAGCAA----------CTTA------
dp4 chr2:5019555-5019683 - AAATCCA-GAAAAT------TCAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAAAAT--ATTGC-CTTTGACCA----TTCACAGCCACTATCTTCACTGCCGCCGCGACAAGCCATAACAA----------CG-ATAA---
droPer1 super_19:724982-725124 - AAATCCA-GAAAAT------TCAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAAAAT--ATTGC-CTTTGACCA----TTCACAGCCACTATCTTCACTGCCGCCGCGACAAGCCATAACAACGATAAGCAACATATAATCG
droWil1 scaffold_181089:11166523-11166648 - TAAC------AT--------TCTATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA-TTAAATTGC-CAA-AACAA-TAAACCACAGCCACTATCTTCACTGCCGCCGCGACAGGCCATGACAA----------CAATCGG---
droVir3 scaffold_12855:2682541-2682664 - AAAAAAA-ATTACCTTAAATCCGATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTGGCCAA-T------------TGACAA----ATCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTATGACAG----------CAAA--A---
droMoj3 scaffold_6540:11883356-11883481 - CGAAAAA-ATACCCTTTAATCCGATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTGGCCAC-T------------TGAAAA----ATCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTATGACAC----------CGAGAGA---
droGri2 scaffold_14624:2267430-2267555 + AAACCAA-ATTCCAT-----TGAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTGGCCAA-C------------TGACAA----ATCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTATGACACCAATAA-----ATATAA---

dme-mir-3645 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:5516298-5516464 - AAACAAATCGATATGGTGAGTGC---AG-GC----------------TGTTTAT----------TGCGGCGCTGTTTACTGTTTACGATC------GCACTGGAAGTGCGCTTTCCGGCGCCTTTGGAAGCCAG-----------------------------------------CACTCAAGTTTCCTTCATTGTTTTCCTTTCTTTCCCCTCTCTCTCTC------C---CCGCAGGCAGCTTATACCGAG
droSim1 chrX:4275639-4275796 - AAACAAATAGAAATGGTGAGTGC---AG-GC----------------TGTTTAT----------TGCGGCGCTGTTTACTGTTTACGATC------G---------TGCGCTATTCGGCGCCTTTGGAAGCCAG-----------------------------------------CACTCAAGTTTCCCTCATTGTTTTCCTTTCTTCCCCCCCTCTCTCTC------C---CCGCAGGCAGCTTACACCGAG
droSec1 super_4:1240682-1240837 + AAACAAATAGAAATGGTGAGTGC---AG-GC----------------TGTTTAT----------TGCGGCGCTGTTTACTGTTTACGATC------G---------TGCGCTATTCGGCGCCTTTGGAAGCCAG-----------------------------------------CACTCAAGTTTCCCTCATTGTTTTCCTTTCTTTCC-CCCTCTCTCA-------C---CCGCAGGCAGCATACACCGAG
droYak2 chrX:2953226-2953406 + AAACAAATCGATATGGTGAGTGC---AG-GC----------------TGTTTAT----------TGCGATGCTGTTTACTGTTTACAACCGCTTTCGCACTGGAAGT-CGGTTTTCGGCGCCTTGGAAAACCAA-----------------------------------------CACTCAAGTTTCCTTCTTTGTTTTCCTTTTCTCTCCCTCTCTCTCTTTCTCTCTCTGTCGCAGGCCGCTTACACCGAG
droEre2 scaffold_4690:2867616-2867787 - AAACAAATCGATATGGTGAGTGC---AG-GC----------------TGTTTAT----------TGCGGCGCTGTTTACTGTTTACGGTC------GCACCGCAAGT-CGCTTTTCGGCGCCTTGGAAAACCAA-----------------------------------------CACTCAAGTTTCCCTCTTTGTTTTCCTTTCTTCTCCCTCTCTCTCTCACTCTCT---TCGCAGGCAGCTTACACCGAG
droAna3 scaffold_13117:2022234-2022400 + AAACAAATCGATATGGTAAGTGCGTGAA-GTAGGCAACATGACACTTTGTATAT----------TTGACAACAATTGAATGTTTACGGG--------------ACCTC--CTATTTCCCGC-TTCGGCAGCAACGA-TG-----------ACGACGAC-----------------GACTCATGTTTTCCT--TTGTTTTGTTGTT---------------------------TTTCAGGCAGCTTACACCGAG
dp4 chrXL_group1a:8129365-8129509 - CAACAAATCGATATGGTAAGTGGGCTGA-AC----------------AGTA-AT------------TGATATCGTGGCCAATATATAGCCGCT-ACGTATCGTATG---------------------------------------------GCTTTTCCACTGAGTTTTGCTGGGAGCTAATGTGTTCTT--TTGTT--TGG-T------------------------T---TTACAGGCAGCTTACACCGAG
droPer1 Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12928:4987995-4988105 + T---CAATCAATATGGTAAGTTGGCCAAAAT----------------TGTT-GTTGCT------TTT------------ACGACACGTACATT-GTTTAT--------------------------AGTGTGTTTATTCTTGCTACTTT--------------------------------------------------TGC-A------------------------T---TTACAGGCAGCTTACACCGAG
droMoj3 scaffold_6359:3485302-3485418 + -------TCAATATGGTAAGTTGGC-ACAGC----------------TGTT----------------------------------------------------------GCTATT-----TTTTAGAGAGCAAATA-ATATGTTTCGTTTGTTTTTACAATTG----------------------------------------TTGTCTTTTTCTCTTGTTA------T---TTACAGGCAGCATACACCGAG
droGri2 scaffold_14853:9687493-9687620 + CATTAAATCAACATGGTAAGTTGTATAA-AT----------------CTATTTTTGCAGCTATCTGCAGCATTGTGTGCACTATATACACATT-AAT----------------------------GAGTGTAATAA-TTTTGTTGTTTT--------------------------------------------------TGT-T------------------------T---TTACAGGCAGCTTACACCGAG

dme-mir-375 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:857527-857647 + CATCCGAAACCC-------------------------------CTTCCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---AT-----------C---ATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG-ACTAAAGCGCCACGTGG--T
droSim1 chr2L_random:38968-39087 + CATCCGAATCC--------------------------------CTCCCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---AT-----------C---ATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG-ACTAAAGCGCCACGTGG--T
droSec1 super_14:828161-828280 + CATCCGAATCC--------------------------------CTCCCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---AT-----------C---ATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG-ACTAAAGCGCCACGTGG--T
droYak2 chr2L:841557-841670 + CATCCGAGTC------------------------------------CCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---AT----------------GCCTAGTAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG-ACTAAAGCGCCACGTGG--T
droEre2 scaffold_4929:914698-914811 + CACCACC------------------------------------ATCCCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---AT----------------GCCTAGTAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG-ACTAAAGCGCCACGTCG--A
droAna3 scaffold_12916:2746986-2747121 + CCACGGAAA------------------AGACACCCCACGGAAA-CGAGGGGCAGCGAATTACTTGGGCCAAGGGAATTCAAACTGTG---AT-----------CGCAATGCTAGAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG-TTGCAAACGCCACGTGG--T
dp4 chr4_group3:5649077-5649230 + CATCCAAGGCCTGTGCCTGTGTCTGAGAGCCCACCCACCCGAA---TAGGGCAGCGAATTACTTGGGCCAGGGGAATTCAAACTGTG---AT-----------CGCAATGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCTC-AAGTAAACGCCACGTGGGTT
droPer1 super_1:7140235-7140385 + CATCCAAGGCCTGTGCCTGTGCTTGAGAGCCCACCCACCCGAA---TAAGGCAGCGAATTACTTGGGCCAGGGGAATGCAAACTGTG---AT-----------CGCAATGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCTC-AAGTAAACGCCACGTGG---
droWil1 scaffold_180772:2278802-2278947 - AATTTAAAACCGTTTTCCATTTC-------------ATTT---TTTGGGGGCAGCGAATTACTTGGGCCAAGGGAATTCAAACTGTG---AAT-----TATTTCAAAATGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGTACAATTGCGACACGTGG--T
droVir3 scaffold_12963:19405390-19405507 + CATTCAAAGT------------------------------------TCGGGCAGCAAATTACTTGGGCCAAGGGAATGCAAACTGTC---AA-----------CGCATTGCAATAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCA-AC-ATAACGCCACGTGG--T
droMoj3 scaffold_6500:23808221-23808350 - TGTTCAGTGTATGCTC---------------------------CTGCAGGGCTGCGAATTACTTGGGCCAAGGGAATGCAAACTGTTCGAAA-----------AGCATTGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCG-A-TAAAACGCCACGTGG--T
droGri2 scaffold_15252:7270330-7270448 + C-----------------------------------------------GGGCAGCGAATTACTTGGGCCAAGTGGATGTAAACTGTG---AAAGCGCATTTTGCATATAACAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCG-A-TATAACGCCACGTGG--G

dme-mir-4 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:15548779-15548889 - AAT---------------ATTATGGAGCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCCGGTCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC-----------------------AC
droSim1 chr2R:14254213-14254323 - AAT---------------ATTCTGTGGCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC-----------------------AC
droSec1 super_1:13063508-13063618 - AAT---------------ATTCTGTGGCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC-----------------------AC
droYak2 chr2R:13623899-13624012 + CAG---------------ATACTGGGGCAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC--------------------ATTAC
droEre2 scaffold_4845:9749030-9749140 - AAG---------------ATACTGTAGCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATCAGCAGCACC-----------------------AA
droAna3 scaffold_13266:9731502-9731641 + AATAATAT----AC-----CAATATAAAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCGGCGCTTATTAACAAGAATTTCAAATGTGAC
dp4 chr3:12677403-12677511 - TA-----------------CCTTATTGTGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT-----------------------AC
droPer1 super_2:8906155-8906263 + TA-----------------CCTTATTGTGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT-----------------------AC
droWil1 scaffold_180701:1651595-1651704 - AAC---------------CAAATGGC-GGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTATCGCCAGT-----------------------TT
droVir3 scaffold_12875:4112289-4112408 + ATATA--T----ATCTATATCATATAGAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGGC-----------------------TA
droMoj3 scaffold_6496:20936612-20936737 - AAAGAAAACAAAATCTATATCGTATAGAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGCC-----------------------TA
droGri2 scaffold_5621:2961-3084 + ATCGA--------TCTATGTTTTATAGAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATACGCAGCGATTAT-----------------ATAGT

dme-mir-4939 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:18872718-18872857 - ATGCACATTTATTTGGCATCATG------------------------------------------C---------------------------------------TTCTGCGATCTCTACCAATTTTCCTTGCACTCT------TTGTCCTTTCCAAAAGTGACACGGGT----GCAGGTGAAGATTCG---GAAGAGGACGACGAAAACGACT---GCAAC-CGGACGACTCTTGGT
droSim1 chr2R:17459524-17459663 - ATCCACATTTATTTGGCATCATG------------------------------------------C---------------------------------------TTCTGCGAGCTCTACCACTTCTCCTTGCACTCT------TTGTCCTTTCCAAAAGCGACACTGAT----GCAGGTGAAGATTCG---GAGGAGGACGACAGCGAAGACT---GCAAC-AGGACGACTCTTGGT
droSec1 super_9:2164747-2164886 - ATCCACATTTATTTGGCATCATG------------------------------------------C---------------------------------------TTCTGCGAGCTCTACCACTTCTCCTTGCACTCT------TTGTCCTTTCCAAAAGCGACACTGAT----GCAGGTGAAGATTCA---GAGGAGGACGACAGCGAAGACT---GCAAC-AGGACGACTCTTGGT
droYak2 chr2R:18832811-18832950 - AACCGCGTTTATTTGCCAAAATG------------------------------------------C---------------------------------------TGCTCCGAGCTCTACCACTTCTGCTCACACTCTGTGTGTTGGTCCTCTCCAACGACGACACGGAT----GCAGATGAAGAAGAG---GAAGAGGACGA------CGACT---GCAAC-AAGGCGACTCTTGGT
droEre2 scaffold_4845:20234099-20234238 - AACCACGTTTATTTGCCATAATG------------------------------------------C---------------------------------------TGCTCCGAACTCTGCTC------CTTACGCTCTTCGTGTTTGTCCTTGCCAAAAACGATACGATT----GCAGAAGTAGAGGAA---GAGTCGGACGAGGACGAAGGAT---GCAAC-AAGGCGACTCTTGGT
droAna3 scaffold_13266:15204126-15204261 - ATTTAAGA-GCTTTTCCCTTCAAAGCCT----------------------------------------------------------------------------------------------AAACAGTTGACACAAAATGTGGCTACCCTTCTTGCTAGTGGCACTGCC----TTGGGGGACTGTGGTGGG---GGGAGGTCCTCTGACATTGGCCAATCTTAGCCGAATCATTGGA
dp4 chr3:14089101-14089284 - AAGCA-ATTAGTTTGCCATTTGCCATCTTATCGGGGTAATACCCAATCCAATTTATTGACCAATTCGAGATAGTCCCAAAGCTTTTCGCTGATTGCAACGATCCATTCCAAAGAAATTTT----------------------------------------------AGTAACTCCCAGAACAACAAAATGAA---CAAAGCTCGATCCGCGTTC---GCCGC-CGCCCTTCTTTTGCT
droPer1 super_4:1228949-1229132 + AAGCA-ATTAGTTTGCCATTTGCCATCTTATCGGGGTAATACCCAATCCAATTTATTGACCAATTCAAGATAGTCCCAAAGCTTTTCGCTGATTGCAACGATCCATTCCAAAGAAATTTT----------------------------------------------AGTAGCTCCCAGAACAACAAAATGAA---CAAAGCTCGATCCGCGTTC---GCCGC-CGCCCTTCTTTTGCT
droWil1 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:24343095-24343103 - AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGGC
droGri2 scaffold_15112:3934700-3934745 - ATATTCAATATGCT-------------------------------------------GAGCACATC---------------------------------------TTCTGAAAGCATTTCAGACTTTC--------------------------------------------------------------------------------------------------------------

dme-mir-4940 three_prime_UTR Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:9137677-9137812 + CCAGACTCAGACGGACTTA----TCGCAA----CTTATCGAT------CGGGTGGCGGATATA----------GATCA-----------------TTGGTT---------------------------------------------------------------------------------------------------------------ATCCCTTAATTAAAGC--------AAACAAGATTTGTTTCGGCCGCCC--GATTTTACATACAACGAC-----------------ACGAATAGCAGG-----------------------------ATAT-AG
droSim1 chr3L:8545595-8545743 + CCTGACTCAGACGGACTTA----TCGCAG----CTTATCGAT------CGGGTGGCGGATATA----------GATCATAGCAAGCCCTATCGAATTGGTT---------------------------------------------------------------------------------------------------------------ATACCT--ATTAAAGC---------AACTAGGTTTGTTTCGGCCGCCC--GATTTTACATACAACGAC-----------------ACAA-TAGCAGG-----------------------------ATAT-AG
droSec1 super_0:1396669-1396817 + CCTGACTCAGACGGACTTA----TCGCAG----CTTATCGAT------CGGGTGGCGGATATA----------GATCATAGCAACCCCTATCGAATCGGTT---------------------------------------------------------------------------------------------------------------ATACCT--ATTAATGC---------AACTAGGTTTGTTTCGGCCGCCC--GATTTAACATACAACGAC-----------------ACAA-TAGCAGG-----------------------------ATAT-AG
droYak2 chr3L:2783249-2783373 - CCAGACTCAGACGGACTA-------GCAA----CTTCGCGAT------CGGGTGGCGGCTGTA----------GATT-------------------------------------------------------------------------------------------------------------GT-----------------CCTTGT---------ATCAAAGG--------AAAAGAGATTTCTTTTGGCCACCC--GATTCAAAATACAACGAC-----------------ACAA-TAGCAGG-----------------------------ATAT-AG
droEre2 scaffold_4784:4908876-4909031 - CCTGACTCAGACGGACTA-------GCAA----CTTATCGAT------CGGGTGGCGGATATACCCGTGCACAGATTGTAGCACACCCTATCGAATTGGAA---------------------------------------------------------------------------------------------------------------TTCCCC--ATTAAAAC--------TGAGTGGGCTTATATCGGCCGCCC--GATT-CACATACAACGAC-----------------ACAA-TAGCAGG-----------------------------ATAT-AG
droAna3 scaffold_13337:19535893-19536018 + CACTGCGATCTCGAGTACT----TT-GATCTCTCTTCTCAGGGCCCC-AAAAAGTATGCTAT-------------------------------------------------------------------------------------------------------------GA-------AAT-ATTTCGTTTGC--------------------------TAAAGTG--------TTTCAAGGATTCTTTTGCGAGCCC--ACCT------------CA-----------------AGGA-TGTCAAA-----------------------------CTCT-AG
dp4 chrXR_group5:393309-393508 - C-AGACTTAGACGGACTTCAATCTAGCAG----TTTAACGAT------CGGGAAACGGGAATA----------AACCAAAGT---------------------------------------------------CGGCAGCCTATCCATCAAAATTCCAATATAATCACAACAGAAA-----TC-CAATTTGTTGC----------------------------------------------TGGTTTATTTACGTTTCTC--GAGC-CACATACAACGAC-----------------ACAA-CAGCAGGTCTTCAGATAACTCATATGAAATATACTTATGC-GG
droPer1 super_9:3484001-3484112 - GCATACATAGGCATCGCA----------T----CC---------------------------------------------------------------------------------------------------------------ATCGGGGTCAC---------CCGGTGGAGGATAAA-TTTTGC-----------------GGTGGTAACCCCGCAACACAAGC--------A--------------------------CTCACACACACAGCGAC-----------------CCAA-ACACGTG-----------------------------CAATAAC
droWil1 scaffold_181096:6035694-6035827 - TCAGGCCTAAAATTAGTTG----CCATAA----CT-CTCATT------TATATAGTAGATTTG----------ATGCTTTTT-----------------------------------------------TGTT----------------------------------------------------------TTTT---------------------------TAATAT---------ATTAAAATTTTTATTA-------------ATGCATTTCA--GTGTAAAAATTAAAATGACACATTTTTCCTT-----------------------------ACGT-AA
droVir3 scaffold_13246:101577-101715 - CAGG---CAGACGAAAGTA----TCTC-----------CGAC--CC--CATGAAGTGTATATA------------TTC-----------------TTGATCAGCATCAATAGCTGAGTCGATGTAGCCATGTCCGTCTGCC----------------------------------------------------------------------------------------------------------TGTCCGTCCGTCC--GTCCGTATGTATGA--ACGCA--------------AGGA-TCTCAGA-----------------------------ACCT-TT
droMoj3 scaffold_6540:2381798-2381917 - GTAGATTCAGTTGTACTTT----ATAGAA----TT--TCGAT-----TTA---------------------------------------------------------------------------------------------------------------------TGTTAA-------AAT-TCATCCCTTAC---------------------------CAATAT---------ATATGTGTT-TTTTCAAATGCATGCATTT-TAATGGTATCAAC-----------------ACAATTTGAAAG-----------------------------TCTC-AT
droGri2 scaffold_15074:3698733-3698860 + CTGAACATAACTGAATAAA----TT--------------------------------------------------------------------------------------------------------------------------------------------CACAACAT-------ATT-TAGTCAGTTACTTATGTATATACT----------TGATACAATTGTGCAAACATGCAAAATTCCAATTAAATGTCA--CAATATATAAAAACTG----------------------A-TGCGAGA-----------------------------AGAT-TG

dme-mir-4941 CDS Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:16024273-16024406 + CACGCTCACCAATCCCATGACCGGCGAGGAGATGCGATTCCTCGAGCTGCTCACCGCCTTTGGCTTGGACATCGAGGCGGTGGCCGCCGCTCTGGGAGTCGATATGCACACGCTCAACAACATGGAGCGCACCG
droSim1 chr3L:15362441-15362574 + CACGCTCACCAATCCCATGACCGGCGAGGAGATGCGCTTCCTCGAGCTGCTCACCGCCTTTGGCTTGGACATCGAGGCGGTGGCCGCCGCTCTGGGAGTCGATATGCACACGCTCAACAACATGGAGCGCACCG
droSec1 super_0:8124906-8125039 + CACGCTCACCAATCCCATGACCGGCGAGGAGATGCGCTTCCTCGAGCTGCTCACCGCCTTTGGCTTGGACATCGAGGCGGTGGCCGCCGCTCTGGGAGTCGATATGCACACGCTCAACAATATGGAGCGCACCG
droYak2 chr3L_random:1624866-1624999 - CACGCTCACGAATCCCATGACCGGCGAGGAGATGCGCTTCCTGGAGCTGCTCACCGCCTTCGGCTTGGACATCGAGGCGGTGGCCGCCGCTCTGGGCGTCGACATGCACACGCTCAACAACATGGAGCGCACCG
droEre2 scaffold_4784:18269422-18269555 + CACGCTCACGAATCCCATGACCGGCGAGGAGATGCGCTTCCTGGAGCTGCTCACCGCCTTCGGCTTGGACATCGAGGCGGTGGCCGCTGCACTGGGCGTCGACATGCACACGCTCAACAACATGGAGCGCACCG
droAna3 scaffold_13337:16593401-16593534 - CACCCTCACGAACCCCCTGACCGGCGAGGAGATGCGCTTTCTGGAGCTGCTCACGTCCTTCGGCATGGACATCGAGACAGTGGCCACCGCCCTGGGCGTGGATATGCACACGCTGAACAACATGGAGCGGACGG
dp4 chrXR_group8:4268508-4268641 + CACACTGACCAATCCGCTGACCGGCGAGGAGATGCGCTTCCTGGAGCTGCTCACCTCGTTCGGACTGGACATCGAGGCGGTGGCGGCGGCCCTGGGCGTCGACATGCACACCCTCAACAACATGGAGCGGACGG
droPer1 super_29:501948-502081 + CACACTGACCAATCCGCTGACCGGCGAGGAGATGCGCTTCCTGGAGCTGCTCACCTCGTTCGGGCTGGACATCGAGGCGGTGGCGGCGGCCCTGGGCGTCGACATGCACACCCTCAACAACATGGAGCGGACGG
droWil1 scaffold_181024:787133-787266 + CACATTAACCAATCCACTGACAGGTGAAGAGATGCGTTTCCTTGAGCTGCTCACCTCCTTCGGTTTGGATATTGAGGCAGTGGCAGCGGCGCTTGGCGTCGATATGCATACCCTCAACAATATGGAACGTACCG
droVir3 scaffold_13049:9209848-9209981 + CACGCTAACAAATCCGCTGACCGGCGAGGAGATGCGCTTTCTCGAGCTGCTCACCTCCTTCGGCCTGGACATCGAGGCCGTCGCCGCCGCACTCGGCGTCGATATGCACACCCTGAACAACATGGAACGCACCG
droMoj3 scaffold_6680:6136665-6136798 - CACGCTCACGAATCCGCTGACCGGCGAGGAGATGCGCTTCCTCGAACTGCTCACCTCCTTCGGTCTGGACATCGAAGCCGTGGCCGCAGCACTCGGCGTCGATATGCACACGCTGAACAACATGGAACGAACGG
droGri2 scaffold_15110:4981116-4981249 + CACGCTCACGAATCCGCTAACCGGCGAGGAGATGCGCTTCCTCGAGCTGCTCACCTCATTCGGCTTGGACATTGAGGCGGTGGCAGCAGCGCTGGGTGTCGATATGCACACCCTGAATAACATGGAGCGAACGG

dme-mir-4942 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:23332312-23332452 + TATGACATCTGCCTGTT-----------ATGAA-------TACATATATT-TTTATGTTTG--AG-TCAACATC--GA------------------------------------------GTTGCCGATGTTTGG---AAAACATCGATGACATCGCT----------GTTGGCATCGA----AATATGTCCATATCTAATATATAGTTCCATTCTGTTTTATT
droSim1 chr3L:22456065-22456207 + AATGACAGCTGCCTGTT-----------ATAAG-------TAATTGTATT-TTTATGTTTG--AGCTAAACATC--GA-----------------------------------------TTATGCCGATGTTTGG---AAAACATCGATGACATCGCT----------GTTGCCATCAA----AGTATGTCCATATCTAATATATAGTTCCATTCTGTTATATT
droSec1 super_41:217199-217341 + AATGACATCTGCCTGTT-----------GTAAG-------TAATTGTATT-TTTATGTTTG--AGCTAAACATC--GA-----------------------------------------TTATGCCGATGTTTGG---AAAACATCGATGACATCGCT----------GTTGCCATCAA----AGTATGTCCATATCTAATATATAGTTCCATTCTGTTATATT
droYak2 chr3L:23917805-23917956 + TATGATATCTGAATATTTAGTTTTTCTTTTGC---------ATATTTATT-TTTAATATTG--AGCTTCACATA--TA-----------------------------------------TATTGCCGATGTTTAC---AAAACATCGATGACATTGTT----------TTTGGCATCGT----CATATGCCCATCACTAATATATAGTCCCCTTCTGTTTCATT
droEre2 scaffold_4784:22817455-22817604 - GGC---ATCTGTATAGG-----------ATGAA-------TAAATTAATT-TTTAAGTTTG--ACCACAACTTT--CA-----------------------------------------TTTTGCCGATGTTTAG---AAAACATCGATGACACCGCA-----TCATCGTTGTCATCGACTTACATATGTACATCTCTAATATATAGTATCATTCTGTTTTATT
droAna3 scaffold_12916:14167403-14167537 + TGCT---------CGTT-----------AGAGA-------TGAT-AAACA-TCGATGTTGGCTTGCCAAACATC--GA-----------------------------------------TGTCAACGATGTTTTC---AAAACATCGATGACATCGAT----------GTTAACATCGA----TGTTTCTCCACCTCTGACCACTGGAGTGAATTATTTTTAGT
dp4 chrXL_group1e:10317112-10317245 + TCAAACATATTATTTTT--------ATTGTAAATATCCTA----------------GTTAT--GGTGTAAATCT--GA-----------------------------------------AAATATCGATGTTTGAGAAAAAACATCGATGACATCCAT----------GTTAACATCGA----TGTTTGTCCAGCTTTAGCTTGCATCCCTAGCTTG-------
droPer1 super_69:203478-203603 - CATATT-----ATTATT-----------GTAAATATCCTA----------------TTTAT--AGTGTAAATCT--GA-----------------------------------------AAATATCGATGTTTGAGAAAAAACATCGATGACATCCAT----------GTTAACATCGA----TGTTTGTCCAGCTTTAGCTTGCATCCCTAGCTTG-------
droWil1 scaffold_181155:90645-90784 - TATTGTTTCCGCCTCTT-----------CTGAT-------CAATCTATTT-CTAATTTATT--TGCT-AACTT---CTTCTCGACTACGTACATATCTACTACGTACAACTCTAGTCAGATATATCCATATCCTATAACG-----------------------------------------------------------AAATCCAACTGCATTCTTAATCGTG
droVir3 scaffold_13036:829247-829384 - TTTATCGTTTATATTTGAAATT------ATTAA-------TTAAATTATT-ATTATTTTTA--AGTAATACAAA-----------------------------------------------------------------ATAAATTAAGGAAATAAAAGTGCAAATTTGTTGTTTTCAA----AG-ATACATTTAATTAATTTTTATTTTTTTTTTATTTTATT
droMoj3 scaffold_6500:19787300-19787437 - TATTATG---AGCTGAA-----------ATAAA-------TATAAAAATA-TTTA--ATTA--AATTCAACAAAATGATGTC------------------------------------------TAGATATTAAA---AAAAAAAAAAAAAATAAAAT----------ATATATATATA----TATATATATATATAT-ATATATATATATATTTTTTTTTTTT
droGri2 scaffold_14853:4224791-4224937 - TATATC-TATGCGTCTGTAGATACT----TGCA-------TAAGTGTATCATCTATGTACG--GTTTACATATA--GT-----------------------------------------GT---ATGGTTTATAA---AAAATATTTCTCAATACGCC----------GTTAGTACAAA----AAAAAAGTAGTGTATAAAAAATGCTTGCACTTTGTTTTAGT

dme-mir-4943 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:16528359-16528506 - ATTTTAAACAACTA-TTTCGG-------ATCGTTTG---------------AATGACCAATTTTGT-------------CTTTTATTTTCTCT--G--------------T-G-----TTTT-----CAGTTAATG-AAAGAT-AG-TGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCC---------AAGAAGACGATGTTGATTG
droSim1 chr2L_random:601476-601603 - ATTT------------------------ATTT-TTG---------------AATGACCAATTTTGT-------------CTT---TCTTCTCT--G--------------T-C-----GTTT-----CAGTTAATG-AAAAGT-AG-TAAACACAGTGCTAAATGAAAGAGAATGAGACCCAGTCGACAGGACCC---------AAGAAGACGATGTTGATTG
droSec1 super_7:174891-175018 - ATTT------------------------ATTT-TTG---------------AATGACCAATTTTGT-------------CTT---TCTTCTCT--T--------------T-C-----TTTT-----CAGTTAATG-AAAAGT-AG-TAAACACAGTGCTAAATGAAAGAGAATGAGACCCAGTCGACAGGACCC---------AAGAAGACGATGTTGATTG
droYak2 chr2R:4574442-4574584 + ATTTTATAAAACTA-TGGGGG-------ATAC-TTA---------------GATAATTAATTTTGT-------------CAT---TGTTCTTT--G--------------T-C------TTT-----CAGTTAATG-AAAAGT-AG-TAAACACAGTGCTAAATGAAAGAGAATGAGACGCAGTCGACAGGACCC---------AAGAAGACGATGTTGATTG
droEre2 scaffold_4845:19592406-19592554 - ATTTTATGCAACTA-TTGTGT-----GTATCT-TTA---------------AATGACTAATTTTGT-------------CAT---TCTTCTCT--G------TTT-----T-T-----TTTT-----CAGTTAATG-AATAGT-AG-CAAACACAGTGCTAAATGAAAGAGAATGAGACGCAGTCGACAGGACCC---------AAGAAGACGATGTTGATTG
droAna3 scaffold_12916:16031637-16031788 + ATGTT------------------------TAA-ATG---------------ATTAAAAAATTATGTTCAACTAATTATTAA-------TTTAT--A------TTTT-ATTGTCTTCCCATTA-----CAGTTAATGAAAAAGT-AATTTAAAAAATCGCTAAATGAAAGAGAATGAGACCCAGTCGACATTTCCC---------AAGAAGACCATGTTGATTG
dp4 chr4_group3:8251613-8251715 - TT-----------------------------------------------------------------------------------TGTTCCTTTTC--------------T-C-----TTTA-----CAGTTATTTGCCAAGC-AG--AAGAAAAGTGCTAAATGAAAGAGAATGAGACACAGTCGACAGACGAA---------CAGAAGACGATGTTGATTG
droPer1 super_1:9700572-9700674 - TT-----------------------------------------------------------------------------------TGTTCCTTTTC--------------T-C-----TTCA-----CAGTTATTTGCCAAGC-AG--AAGAAAAGTGCTAAATGAAAGAGAATGAGACACAGTCGACAGACGAA---------CAGAAGACGATGTTGATTG
droWil1 scaffold_180772:4810613-4810759 - AAGTTTACCAATTAATAGCAA-------ATTG-TTGGTATTTCCATTTTAAAATTGCTAACATTTA---------CCTTAA-------TTTCT--C------TTCT-TTTC-T-----TTTT-----CAAT---------TCC-AG-CTTACGTTGCTATAAATGAGAAAGGATCAA------------GATCAA---------ACGAAAAGGATGTTGATTG
droVir3 scaffold_13052:1601321-1601473 - ATATTGCGCAACCA-TTCTGGTCCGAATTTCA-TTG---------------AGTCAGTCATTTTGG----GTAACTCTT------------GA--GTTTATTTCTTAATTGTC------TTTCGCTGAAATTGTGCAATAAAT-AA-CA---ATTT---------------TACCATCAGCATTAGCCAGCACAC---------ACACGCACGCTATCGGTTT
droMoj3 scaffold_6500:21042727-21042874 - AATTA------------------------TAA-TTG---------------AACACTTGA-TGCGATTGCCAAATTTTTGAT---TTTTGGTTCTA--------------T-T-----TTTA-----GAGTTACAG-CTAAAT-GA-AA---ACTATACCAATTATAAAATCAAAAGGGCTACACAAGAACATTTATGATTTCAAAGAAAAGTGTTTCATTTG
droGri2 scaffold_14822:853797-853916 - GCATG-----------------------------------------------ATGACTTGTGGTCT-------------CTA---TTCTATAT--G--------------C-T-----GGTT-----GAGTTTGTG-AATGGTCAG-TTGCCGTGGCGAAAGATAAAAGACAAG--GAACAGGTTGGATTGACCA---------AAGAGAAATATGATCATAG

dme-mir-4944 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:6338711-6338870 - AGA-TG-CCCAGACAGCAAAAGT----------------------------------------------------------------------------------------------------------------------------------AACTT-TCGTAATCGAAAAAGTTTCGCTTTTTTTTCTGCTT--CT--GCCGCTGAGCAAGTTTTAAATATTACCGCTTAGTT-------ACAGCTGCAGG------------------------------AAG-AAAAGTTATAATTATGGACTACGTACATAAATATCTTGGCAAGTGT----------------------TT
droSim1 chr3R:15041591-15041748 + AGA-TG-CCCAGACAGCAAAAGT----------------------------------------------------------------------------------------------------------------------------------AACTT-TCGTAATCGAAAAAGTTTCGCTTTTTT--CTGCTC--CT--GCCGCCTAGCAAGTTTTAAATATTAACGCTTAGTT-------ACAGCTGCAGG------------------------------AAG-AAAAGTTATAATTATGGGCTAAGTACATAAATAACTTGGCAAGTGT----------------------TT
droSec1 super_0:15602732-15602889 + AGA-TA-CCCAGACAGCAAAAGC----------------------------------------------------------------------------------------------------------------------------------AACTT-TCGTAATCGAAAAAGTTTCGCTTTTTT-TCTGCTC--CT--GCCGCCGAGCAAGTTTTAAATATTAACGCTTAGTT-------ACAGCTGCAGG------------------------------AAG--AAAGTTATAATTATGGGCTAAGTACATAAATAACTTGGCAAGTGT----------------------TT
droYak2 chr3R:10367066-10367225 - AGA-TG-CCCAGACAGCAAAAGT----------------------------------------------------------------------------------------------------------------------------------AACTT-TCGTAATCGAAAAAGTTTCGCTTTTTTCGCTGCTC--CT--GCCGCCGAGCAAGTTTTAAATATTAACGCTTAGTT-------ACAGCTGCAGG------------------------------AAG-AAAAGTTATAATTATGGGCTAAGTACATAAATAACTTGGCAAGTGT----------------------TT
droEre2 scaffold_4770:15270440-15270598 + AGA-TG-CCCAGACAGCAAAAGT----------------------------------------------------------------------------------------------------------------------------------AACTT-TCGTAATCGAAAAAGTTTCGCTTTTTT-GCTGCTT--CT--GCCGCCGAGCAAGTTTTAAATATTAACGCTTAGTT-------ACAGCTGCAGG------------------------------AAG-AAAAGTTATAATTATGGGCTAAGTACATAAATAACTTGGCAAGTGT----------------------TT
droAna3 scaffold_13340:761260-761417 + AGA-TGGCCCAGACAGCAAAAGT----------------------------------------------------------------------------------------------------------------------------------AACTT-TGGTAATCGAAAAAGTTTCGCTTTCGT------TTTTTTCCATC-CCGAACAAGTTTTAAATATTAACGCTTAGTT-------ACAGCTTCGGA------------------------------GAG-GAAAGTTATAATTATGGCCTAAGTACATAAATAACTCGCCAAATGT----------------------TT
dp4 chr2:7128424-7128589 + AGA-TG-G-CAGACGGCCCAAGG----------------------------------------------------------------------------------------------------------------------------------AACTT-TGGTAATCGAAAAAGTTTCGCTTTTTTCGC---TTTTTT--CTCAGTGGCCAAGTTTTAAATATTAACGCTTAGTTACTCCGTACAGCTGCAGA------------------------------AAGAAAAAGTTATAATTATGGCCTAAGTACATAAATAACTCGGCAAATGT----------------------AC
droPer1 super_0:982713-982880 + AGA-TG-G-CAGACGGCCCAAGG----------------------------------------------------------------------------------------------------------------------------------AACTT-TGGTAATCGAAAAAGTTTCGCTTTTTT-TTTGCTTTTTT--CTCAGTGGCCAAGTTTTAAATATTAACGCTTAGTTACTCCGTACAGCTGCAGA------------------------------AATAAAAAGTTATAATTATGGCCTAAGTACATAAATAACTCGGCAAATGT----------------------AC
droWil1 scaffold_181108:125373-125548 - AGA-TG-GG------GCAAAAGTATGTCGACTGAGGAAAACC-GGA--------------------------------------------------------------GAG----------------------CA------------------AACTTGTAGTAATCGAAAAAGTTTCGGTTTGTT------------------GTAGCCAAGTTTTAAATATTAACGCTTAGTT-------ACAGCTGCAGAA--G---------------------------AGAAAAAGTTATAATTATGCCGTAAGTACATAAATAACACGGCAAATGTGAC--------TT---T-----TT
droVir3 scaffold_13047:1304900-1305088 - AGAA----TAAGAAAGAA-----ATG-----TTAGGACGGCT-GGA--------------------------------------------------------------CAG----------------------GATTCAGTTTTGTTGCTGCTTACTG-CGGTAATCGAAAAAGTTTTGTT-----------------------GTAGCCAAGTTTTAAATATTAACGCTTACTT-------ACAGCTGCAGAGCTG--------------------------GAA-AAAAGTTATAATTATGGCGTAAGTACATAAATAACGCTGCAAATGTGCC------GCTTTTCT-----TT
droMoj3 scaffold_6540:5375448-5375637 - GGAATA-ATAAGAAAGAA-----ATG--------------CT-GGA--------------------------------------------------------------GAGGCACAGGCACAGTCTGGCTTGAGATTCAGTT----TGCTGCTTACGG-CGGTAATCGAAAAAGTTTT----------CTGTT-----------GTAGCCAAGTTTTAAATATTAACGCTTACTT-------ACAGCTGCAGAGCTG--------------------------GAA-AAAAGTTATAATTGTGGCGTAAGTACATAAATAACGCTGCAAATGC------------------------
droGri2 scaffold_14906:4949937-4950239 + AGAA----TAAGAAAGAA-----ATG-----TAAGCAACGCTCGGACAGATACAGATACAGAGACAGAGCCAGAGACAGAGCCAGAGACGGACACCGAAACTGAAACTGAGGCACA-GCACAG---GACTTGAGATACAGTTTTGTTGCTG----CTG-CGGTAATCGAAAAAGTTTGGTT-----------------------GTAGCCAAGTTTTAAATATTAACGCTTACTT-------ACAGCTGCAGAGCAGAGCTAAGCAGAAAAAAAAAATAAATAAAA-GAAAGTTATAATTATGGCGTAAGTACATAAATAACGCTGCAAATGTGCCAGAGTGGGGTTGGTAGGAGTT

dme-mir-4945 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:7267898-7268043 - TTGGTGATGGTGATGGTGATGGTGCTGGTGGTGGTGCC------TTCATTG-------------------------TTTT---------TCTCTTCTT--TTTGTTGTTTGACTTTTACACTTTTG---------------AAC--------------------------------------AA------CAAGCCGAAAGGAA----------------------------------------------AAAG--CAT---GAA-GGAATGCAAAGTATTCGATAAAAAAT-TATGAAA
droSim1 chr3R:14102257-14102390 + TTGGTGATGG------------TGCTGGTGGTGGTGCC------TTCATTG-------------------------TTTC---------CCTCTTCTT--TTTGTTGTTTGACTTTTACACTTTTG---------------AAC--------------------------------------AA------CAAGCCGAAAGGAA----------------------------------------------AAAG--CAT---GAA-GGAATGCAAAGTATTCGATAAAAAAT-TATGAAA
droSec1 super_0:14695532-14695664 + TTGGTGATGG------------TGCTGGTGGTGGTGCC------TTCATTG-------------------------TTTC---------CCTCTTCTT--TTTGTTGTTTGACTTTTACACTTGTG---------------AAA--------------------------------------AA------CAAGCCGAAAGGAA----------------------------------------------AAAG--CAT---GAA-GGAATGCA-AGTATTCGATAAAAAAT-TATGAAA
droYak2 chr3R:11301709-11301828 - TTGGTGG---------------------------TGCC------TTCATTG-------------------------TTTT---------CCTCTTCTT--TTTGTTGTTTGACTTTTACACTTTTG---------------AAC--------------------------------------AA------CAGGCCGAAAGGAA-------------------------A--------------------AAAG--CAT---GAA-GGAATGCAAAGCATTCGATAAAAAAT-TATGAAA
droEre2 scaffold_4770:14352366-14352483 + TTGGTGG---------------------------TGCC------TTCATTG-------------------------TTTT---------CCTCATCTT--TTTGTTGTTTGACTTTTACACTTTTG---------------AAC--------------------------------------AA------CAAGCCGAAAGGA-----------------------------------------------AAAG--CAT---GAA-GGAATGCAAAGCATTTGATAAAAAAT-TATGAAA
droAna3 scaffold_13340:13702429-13702549 - TCGGCAG---------------------------TGCC------CCCATTG-------------------------TTTT---------CTTCTCATTT-TTTCTTGTTTGACTTTTACACTTTTTT--------------AAC--------------------------------------AA------CAA--CAAAAGCAA----------------------------------------------AGAGACAAT---GGACGGAATGCAAAGTATTCGATATAAAAC-CG-AAAA
dp4 chr3:2000510-2000593 + CTGGTGGTGGTGGTGGTGGTGGTCTTGGTGCTGCTGCT------------------------GCAATTCAATTTCGTTTC---------GCTTTTGTTTCTTTTTTGTTTGCCTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1 super_6:893248-893436 - TTGGCGGCGACGGCG-------------------TCTC------TTCTCTGTCTCTCTCCCTCCCGTTCTCGTTCGCTCCCACAGGACGG------CC--TCTGTTGTTTGACTTTTGCACTTCTTT---------TTTTAAACAGGGAGTGGGAGTGGGAGTGTGAGCGAGACAAACAGACAGCA---GC-----------------------------------------------------------AAAA--CAT---AAA--GAATGCAAAGTATTCGATAAAACACACACAAAA
droWil1 scaffold_181089:4216454-4216565 + TTGGCAGCAGC--------------------------A------GCCATTG-------------------------TCTT---------AAG---------CAGTTGTTTGACTTTTACACTTCTCC--------------CGC--------------------------------------AGCAACAACAAAGCATAAAAAG----------------------------------------------A-------------A-AACATGCAAAGTATTGGAAAAACACT-GAAAAAT
droVir3 scaffold_12855:9719552-9719632 - TTGGTTCGCG------------------------CGCGCGCACGGCCATTG-------------------------TCTT---------AAG---------CAGTTGTTTGACTTTTGCACTTTTTT--------------AAC--------------------------------------AACA---ACAAAGAA-----------------------------------------------------A------------------------------------------AGTCA--
droMoj3 scaffold_6540:24748319-24748394 - TTCGCGCAGG----------------------------------GCCATTG-------------------------TCTT---------A------CG--ACAGTTGTTTGACTTTTGCACTTTTTT--------------AAG------------------------------A-------AA------C------------------------------------------------------------------------------------------AAACAAAAAAC-AATGAGC
droGri2 scaffold_14830:2094020-2094205 - TTTGGCG-----------------------------CC----C-AGTATTG-------------------------TTTT---------AAG---------CAGTTGTTTGACTCTTGCACTTTTTTCTTCTTTTTTTTT-AAT------------------------------AAGCAAACAACA---ACAAAGCCAAGTCAGCAACCTGTACACAGTCTGAAGGGGGAAGGGCTGGAGTTTGCTTGAAAAAG--TATCTGCAA-AGAATGCAAAGTATTGTATACAAAGTGTGTAGAA

dme-mir-4946 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:18867030-18867176 - TAAAAATAAAA----AAATG-------------CTC-----------------GATTGCTGCAA-----------------------------------------CTAAGAAACA--AATATTTTCAGTTGTTCAT----TGCAAATTAATTTA---TGTACATTGCTAT---------------GAAATCAATTGAAAATATAAT---TGTA--------------------TCCTAGGCTTATCAGCT-GCAATGCCTCTATGAAGGG
droSim1 chr2L:18557325-18557471 - TAAAAATAACA----AAACG-------------CTC-----------------ATTTGCTGCAA-----------------------------------------ATAAGAAACA--AATATTTTCAGTTGTTCAT----TGCAAGTTAATTTA---TGTACATTGCTAT---------------GAAATCAATTGAAAATATAAT---TGTA--------------------TCCCAGGCTTATCAGCT-GCAATCCCCCCAAGAAGGG
droSec1 super_7:2494148-2494294 - TAAAAATAACA----AAACG-------------TTC-----------------ATTTGCTGATA-----------------------------------------ATAAGAAACA--AATATCTTAAGATGTTCAT----TGCAAATTAATTTA---TGTACATTGCTAT---------------GAAATCAATTGAAAATATAAT---TGTA--------------------TCCTAGGCTTATCAGCT-GCAATCCCCCCAAGAAGGG
droYak2 chr2R:5382904-5383074 - TAAAAATAACA----AAGCA-------------TAT-------------TAGCATATGCTGCAA-----------------------------------------ACAATAAATA--AATATTTTCAGCTGTGCAT----TGCAAATTAATGTA---TTTACATAGCTAT---------------GAAAGCAATTGAAACGACAAT---TGCAGGTCATTTTTATTGCACACATCCTAGGCTTATCAGTG-GCAATGCCCCTACGAAGAG
droEre2 scaffold_4845:5409251-5409398 + TACAAGTAACA----AAGTG-------------CTA-----------------ATTCGCTGCAA-----------------------------------------ATAGGAAATA--AATATTTTCAT------------------------TATTAT-CACATTGCCA----------------GAAACCAATTGAAAAGATAAT---TGTAGGCCACTTTTGTTGCACGCATCCTAGGCTTATCAGCT-GATATGCCCCCACGAAGGG
droAna3 scaffold_13334:1096999-1097137 - TAAATATTTTT----AAGTA-------------ATT-----------------AATTG-----------GGCTACTG----------------------------GCTTTAAAAAATAATATTTTCAAATGTTATT----GGTAATTTAATTTT---TTTATAATTTT-TAAA------------TACATTTTTTTAAACTAAAATCCTTGTT--------------------TTCT----------------GCTTCCTTT--TCAGCT
dp4 chrXR_group6:8932576-8932713 + TTAAAATAAAA----ACATT--------------TC-----------------ATATTTAAATT-ACAAGGTTTTAT----------------------------ATTTTAAATA--AATAT------------ATTTCCCACAAATTAAAGAT---AATATATTTATTT---------------TAAAGTAATTTATAATTAAAT---TGAA--------------------TATGGGCCCTA----C---------TACAAAGACTTT
droPer1 super_1:5889084-5889218 + GATAGGTT---------------------------T-----------------TTGCAACACAA-----------------------------------------AAAATAAACA--AAGATTAGTTTCCAGTTAT----TAAATATTAATATA---TATATTTGAAGCA---------------GAAATATGTATATTTTAGAAT---CGTT--------------------TCTGTGGGGTTTTCATT-GCAATACCTTT--TATGAA
droWil1 scaffold_180698:8557325-8557469 - ACCAAAGAGAA----ATATCTCAAACTCAAACTCACAAACAAGACACATCAGCGC--------------------------------GCAAGAGCAACAACGCAAAGAACAAT--------------------------------------------TAAACAATTCTAT---------------TAAATTGATCGAAAATATAAA---CATT--------------------TCA-CAGCATAACAACA-ACAAA-----AGAAAAGGA
droVir3 scaffold_12855:7203873-7204022 + TGAAAATGAAT----AAATA-------------TAT-------------------ATGCTCCAATTAAAATTGAAACTACTATCCGAT--------------------------------------CGAAGGTCTT-TG-TTCAAATTCATTTG---A--GGGGTTTTTC---------------GCACTTTTTGGAAAATCCATC---ACTC--------------------CCCGATGGAAATGGGCT-TCAATGACTTAGTGGGTGG
droMoj3 scaffold_6500:29247639-29247782 - GGCCAATTAAC----AAACG-------------CAC-------------------GTGCAGCAG-----------------------------------------CTACAACAGC--ATCGTGTGCACACATACAT----TCAAACT-TCTTCT---GGAACATTCTTTTAATCACATCAGCTGTTAGTTTGGTTTAGTTTTGGTA---GATG--------------------G---------CGCTGCA-G------CACTGAATCTAT
droGri2 scaffold_14853:9426729-9426870 + TCCACAAAGATATCAAAATC--------------TC-----------------AGATACTGCTT-GAAAGTTGACAT---------------------------------------------TT-----CCCTCAT----AGAATA-TCCTTTA---TGTACAGTAATAT---------------GAGT--GTTTGTATTTGAAGTCT-TCTT--------------------TTTCATCGTCATTTATCTCCATCCTCTCTTTGACTGC

dme-mir-4947 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:24834459-24834589 - TAAAGTAATAATATGAAAGCGACCCACCCAT--TC------------------------------------------------CCCTTCCGCCCATATTTATCCTT------------------------CGTCTACTGTTTCATCG----CAGGATTTAAGTGGGCGGAGCACGGAAT-----------TCGGGGGCGTGGCGC-----A--CTGGGTAGCGGGTA
droSim1 chr3R:24520998-24521128 - TAAAGTAATAATATGAAAGCGACCCACCCAT--TC------------------------------------------------GCCGCCCGCCCACTTTTATCCTT------------------------CGTCTACTGTTTCATCG----CAGGATTTAAGGGGGCGGAGCACGGAAT-----------TCGGGGGCGTGGCGC-----A--CTGGGTAGCGGGTA
droSec1 super_4:3696490-3696620 - TAAAGTAATAATATGAAAGCGACCCACCCAT--TC------------------------------------------------GCCGCCCGCCCACTTTTATCCTT------------------------CGTCTACTGTTTCATCG----CAGGATTTAAGGGGGCGGAGCACGGAAT-----------TCGGGGGCGTGGCGC-----A--CTGGGTAGCGGGTA
droYak2 chr3R:21664594-21664723 + TAAAGTAATAATATGAAAGCGACCGGCCCAC--C-------------------------------------------------CCTCGCCGCCCACTTTTATCCTT------------------------CGTCTACTGTTTCATCG----CAGGATTTAAGTGGGCGGAGCACGGAAT-----------TCGGGGGCGTGGCAC-----A--GTGGGTAGTGGGTA
droEre2 scaffold_4820:3199292-3199428 + TAAAGTAATAATATGAAAGCGACCGGCCCAC--C-------------------------------------------------CCTTTCCGCCCACTTTTATCCTT------------------------CGTCTACTGTTTCATCG----CAGGATTTAAGGGGGCGTAGCACGGAAT-----------TCGGGGGCGTGGCACAGTGGCTAGTGGATAGTGGGTA
droAna3 scaffold_13340:19733656-19733776 + TAAAGTAATAATATAAAAGCGACCAGCCCCT--AC---------------TTCTACTCCACCCAACCA-------------------GCCTCCCGATCCTGGGCAG------------------------CGTTGGTTGTTTCAGAG----G--------------CGGCTTGAGGAAC-----------TCGGGGGCGTGCCGC-----T------------CCTA
dp4 chr3:722533-722667 - TAAAGAGATAATGACAAAGCAACCCATTAAAAGCCATCCCTTGACAACACTCCTCTCTCATCCC-------------------------------------------------------------------CTTCATATTCCCATCT----CCGAA---AAATGAGCGAAGAACGGAGA-----------GCAACGTTTTAATAA-----A--TTTGTAAACAGATT
droPer1 super_26:1114277-1114391 - GACGGTGGCCTTCC-------ACTTCCTCTT--CC------------------GCCGCCACCACACCCCCTTCCCACTGCCAA---------GC------A---CG------------------------CTCTTTTTATCGCAATT----G-------TTGTCGG-------CGGA------------------TTTTCGGCTT-----A--CATGCGAGGAGCTA
droWil1 scaffold_181096:10088805-10088934 + CAAAATGTCCTTGATG-----ACTGGC-------A-------------------------TTCACACACACACA---------CACACACACACACATTTAAACACATCCATATGTACATCCATGTATACATTTATCTAATACAGAT----G--------------CAGAGCTCGGA--------------------------AC-----T--TCAAGTATAAGGCA
droVir3 scaffold_13049:15807-15938 + TATG-TGGCAGTAGAAATTTCTCCCATAAATATAT-----------------------------GTAC---------------CCTTTCCGTCTTTATGTTTGTTT------------------------GGTTGAATGGATCGAAC----TACAAATCTAGAGATTAGAAATTGGAAA-----------TCCGTATTCTAGTA-----------ATGTATCCAGAA
droMoj3 scaffold_6500:17797597-17797712 + CACACACAC--------------ACACACAG--AC------------------------------------------------TTTGGCTACAAAATGTTAACTTG------------------------AGTTTGAAATTTTCCAG-----GGAATATGAGTGAGAGGCGAGCGAAAG-----------CAGTGAACAGAGTGA-----A--CAATGTATAAAGTA
droGri2 scaffold_14853:8203259-8203387 + CAAATTAACAACAAGAATTCTTTCCAGCTCC--CT-------------------------CTCTCTCTCTCTCTCTCTCTCTA---------AC----------TC------------------------CGTCTC-----TCATTTCCGAGAGAGAGCTAGTTACATTGCTGAGAGAGAAGTGAAGAGAGCCGAGC-----------------------TTTGTTA

dme-mir-4948 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:26876804-26876940 - GCACTCCCAGTCCCGGTCGTAGATGTGGGCGTAGGTGGCGGCGGGCGTGGCGTGCGTGATCCTGGTTGTGGTGACCACGCCGGTGCGCTTGCCCTCCTTCTGGGCCCACTCCATGACGCTCTGGACCCTGCCTTGCT----------------
droSim1 chr3R:26523820-26523956 - GCACTCCCAGTCGCGGTCGTAGATGTGGGCGTAGGTGGCGGCGGGCGTGGCGTGGGTGATCCTGGTTGTGGTGACCACGCCCGTGCGCTTGCCCTCCTTCTGGGCCCACTCCATGACGCTCTGGACCCTGCCTTGTT----------------
droSec1 super_4:5701489-5701625 - GCACTCCCAGTCGCGGTCGTAGATGTGGGCGTAGGTGGCGGCGGGCGTGGCGTGTGTGATCCTGGTTGTGGTGACCACGCCGGTGCGCTTGCCCTCCTTCTGGGCCCACTCCATGACGCTCTGGACCCTGCCTTGCT----------------
droYak2 chr3R:27815996-27816132 - GCACTCCCAATCCCGGTCGTAGATGTGGGCGTACGTGGCGGCAGGCGTGGCATGGGTGATCCTGGTGGTGGTGACCACTCCAGTGCGCTTGCCCTCCTTCTGGGCCCACTCCATGACGCTTTGGACCCTACCTTGCT----------------
droEre2 scaffold_4820:1105506-1105642 + GCACTCCCAATCCCGGTCGTAGATGTGGGCGTACGTGGCGGCAGGCGTGGCATGGGTGATCCTGGTTGTGGTGACCACTCCAGTACGCTTGCCCTCCTTCTGGGCCCACTCCATGACGCTTTGGACCCTGCCCTGCT----------------
droAna3 scaffold_12911:4046748-4046884 + GCACTCCCAATCCCGATCGTAGATGTGGGCGTAGGTTGCAGCTGGCGTGGCGTGGGTAATCCGAGTGGTGGTCACTATTCCAGTTCGCTTCTTCTCCTTTTGGGCCCACTCCATGACGCTCTGAACGCGTCCTTGCT----------------
dp4 chr2:271882-272018 + GCACTCCCAGTCGCGATCGTAGATGTGGGCGTAGGTGGCCGCAGGCGTGGCATGCGTAATCCTCGTTGTGGTCACGATTCCCGTGCGCTTGCCTTCCTTCTGGGCCCACTCCATGATAGTCTCAATCCGGCCCAGCT----------------
droPer1 super_7:3056347-3056483 + GCACTCCCAGTCGCGATCGTAGATGTGGGCGTAGGTGGCCGCAGGCGTGGCATGCGTAATCCTCGTTGTGGTCACGATTCCCGTGCGCTTGCCTTCCTTCTGGGCCCACTCCATGATAGTCTCAATCCGGCCCAGCT----------------
droWil1 scaffold_181108:531799-531935 - GCATTCCCAGTCCCGATCATATATATGCGCATAGGTTGAGGCAGGCGTGGCATGTGTAATTCTGGTAGTGGTAACAATTCCCGTTCGTTTACCCGCACGCTGGGCCCAATCCATAATGGATTCCACCCGACCCTGTT----------------
droVir3 scaffold_12855:1470098-1470234 + GCACTCCCAGTCCCGATGATAGACACGCGCAAAGGTGGCTGCGGGCGTGGCGTGCGTAATGCGTGTGGTGGTCACCACGCCAGTGCGTTTGCCTTCACGCTGTGCCCAGTCCATGATGGAGTCGAGTCGACCCTGGC----------------
droMoj3 scaffold_6540:27213622-27213758 + GCACTCCCAGTCCCGATGATAGATCCTTGCATAGGTGGCCGCAGGTGTGGCGTGTGTTATACGCGTGGTAGTCACGACGCCGGTCCGCTTGCCCTCACGCTGTGCCCAGTCCATGATGGAGTCGAGTCGACCCTGGC----------------
droGri2 scaffold_15203:6653367-6653519 - GCACTCCCACCGCCGATCGGCGACATGGGCGTAGAGGGCAGCGGGTGTGGCATGGGTTACCCGCGTTGTGGTCACAAATCCAGTGCGCATGCCATCCACCTGCGCCCAGTTGAATATGTTCTGGACGTGATGTTCCTCCTTGAGAGAGGCACT

dme-mir-4949 five_prime_UTR Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:27044980-27045109 - TGCGAAACG----------------TGTTTGA-T------AATGCGCCGCCATCTTGCGGCACACTCGCACA-C------ACACA-CGTGTGCC-----------ATTCTGG-------TTTTGC--AGTGGTGTGCGTGTGTGCCTC-------GAGTCGTTGCGTCACTGGAAAAGTT-----------AGAAAATC
droSim1 chr3R:26688146-26688275 - TGCGAAACG----------------TGTTTGA-T------AATGCGCCGCCATCTTGCGGCACACTCGCACA-C------ACACA-CGTGTGCC-----------AGGCTGG-------TTTTGC--AGTGGTGTGCGTGTGTGCCTC-------GAGTCGTTGCGTCACTGGAAAAGTT-----------AGAAAATC
droSec1 super_4:5862973-5863106 - TGCGAAACG----------------TGTTTGA-T------AATGCGCCGCCATCTTGCGGCACACTCGC---ACACACACACACA-CGTGTGCC-----------AGGCTGG-------TTTTGC--AGTGGTTTGCGTGTGTGCCTC-------AAGTCGTTGCGTCACTGAAAAAGTT-----------AGAAAATC
droYak2 chr3R:27981306-27981430 - TGCGAAACG----------------TGTTTGA-A------AATCCGTCGCCATCTTGCGGCACACTCAC---AC------ACACA-CGTGTGCC-----------AATATGG-------T-TTGC--AGTGGTGTGCGTGT--GCCTC-------GAGTCGTTGCGTCACTGGAAAAGTC-----------AGAAAATC
droEre2 scaffold_4820:935924-936048 + TGCAAAACG----------------TGTTGGA-A------AATTCGCCGCCATCTTGCGGCACACACA-----C------ACACA-CGTGTGCC-----------AGTCTGG-------T-TTGC--AGTGGTGTGCGTGTGGGCCTC-------GAGTCGTTGCGTCACTGGAAAAGTC-----------CGAAAATC
droAna3 scaffold_13340:14436299-14436405 - CTCAAAACG----------------TGTTCAA-TGG----A----ATCGCCATCTTGCGGCTCACAC---------------ACA-CATGTGAC---------------------------------AGTTGTTCGTGCGTGTGTCTGG------GAGTCGTTGCGTCACTGAGAAAGTC-----------GGAAAAT-
dp4 chr2:85298-85449 + TAC-------ATTTTCTCGAAAACGTGTCGAA------------TGTCGCCATCTTGCGGCACACACAC---AGACACACACACA-CATGTGAC-----------GAGAGGAATTGCCAGT--GCTCAATAGTGTGCCTGTGTG--TC-------GAGACGTTGCGTCACTGAAAAAGTCGAACAGC--AAAGTAAATT
droPer1 super_7:2877006-2877157 + TAC-------ATTTTCTCGAAAACGTGTCGAA------------TGTCGCCATCTTGCGGCACACACAC---AGACACACACACA-CATGTGAC-----------GAGAGGAATTGCCAGT--GCTCAATAGTGTGCCTGTGTG--TC-------GAGACGTTGCGTCACTGAAAAAGTCGAACAGC--AAAGTAAATT
droWil1 scaffold_181108:712012-712143 - TGAAAAATGTATTTTATC--TA--------GA-G------ATATTGTCGCCATTTTGCGGCACTCAC-------------ACACA-CGTGTCAC-----------AAGA-GAACTGTCAAATTGT--AGCTGTATGCGTGAG----AC-------CAGTCGTTGCGTCACAGCAAAAGTT-----------TTCAAATT
droVir3 scaffold_12855:1227223-1227391 + TAA------TATTTTTTC--AAACGTGTTCAG------------TGTCGCCATCTTGCGGCACATACAC---ACACATTCAGACAAGATGTCACACGGACGTACGAAGA-GAACTGTCAGT--GTGTT-TTGTGTGCCGTAGTG--TGGAGTGTAAATTTGTTGCGTCACTAGAAAAGTTCAACTGT-TGAAGGAAATC
droMoj3 scaffold_6540:26974787-26974936 + TAA------CATTTTTTC--AAACGTGTTCAA------------TGTCGCCATCTTGCGGCTCACGCAC---ACACTCA--TGCAAGATGTCACACGGGCGTATGAAGA-GAACTGTCAGT--GTT--AC------------TGTGTG-------AAGTCGTTGCGTCACTAGAAAAGTTCAACGATTTGAAGAAAATT
droGri2 scaffold_15245:5068344-5068468 + G-CGACAAG----------------TGGTTGACTGCACCTGCACCCTCC-CAA---CAGACACACTCACACA-C------ACACA-CACAACCC-----------TCTGTGT-------GTGTGC--AAGTGTGTGTGTGTGTGTGTC-------AAA-CGCAGCA--ACTGCTGAAGTT-----------T----AAC

dme-mir-4950 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:3277158-3277280 + TTTATACATTTG--TTTAT-----------------------AATGCACATAATAAATGCCAACC------ATTCATCATGA-AATTATAAATAGTAT--CATTTCAAGATGCATGG-TAAG-GCTT------TATTTT---------------------------------------------G--------TTTTGCA---ATCAAAGACATCTTTCTT
droSim1 chr3R:3321450-3321569 + TTTATATATATT-ATTTAT-----------------------TATGCTCAGCATAAATGCCAAGC------ATTCGTCGTGA-AATTATAAATTATATATTA--TATAAATTCATGG-TAAG-GCTT------CATTTT---------------------------------------------T--------TAACGCA---GTCTAAGACATC----TT
droSec1 super_6:3368064-3368189 + TTTATATATATT-ATTTAT-----------------------TATGCTCAGCATAAATGCCAAGC------ATTCGTCGTGA-AATTATAAATTATATATTATTTCTAGATTCATGG-TAAA-GTTT------CATTTT---------------------------------------------G--------TAACGCA---GTCTAAGACATCTTTCTC
droYak2 chr2L_random:3663454-3663574 - TTTAGCCAAGTT-A-ATT--------------------------TGGTAAAAACAAAAACCAGAA------ACCGGCTACAC-GATGAAACGCTAAATGCCATTTTAGCAGTC--AG-GTAATTATA------TATT--------------------------------------------------T--AT-TTTTAAA---TTTAAACCCATTTTTTAT
droEre2 scaffold_4784:2237866-2237984 - TTTCCAAATTTG-A-ATGC---AGA-TTTTT------------------AGACAATTGCTCCAGA------AACATT------------TAGAGGTATGCCACTTCAAAATACGA----TAATTGAAGGTTGAATTATG---------------------------------------------G-----AC--TTTAG----AACTTCAGCCTTCTTTTT
droAna3 scaffold_13340:2198726-2198841 + TTAATAATTTTA--TTTAT-----------------------CGAAC------TAATT-AGGCTT------TTCATACAGATTTAAGCTTAATATTAAATTA--TAG-------------------------------------------------------AGCACTGGCTGCGGTGGTATATA--T--AT--TTTTC----AATAAACACATTTTTATG
dp4 chrXR_group6:912830-912970 - TTTATACCACGC--ACTAGATTGGGTTCTCCAGATAACGAATGTTGTCCAGTAAAATCCCAATCCATTCAAATGGATTATGT-GACCA-------------GTGTTAAGATGCGTCG-AGGG-CAGT------CAGCTT---------------------------------------------G--------TGTTGCT---ATCTCGCTCCCCTCCGCC
droPer1 super_3:249021-249147 + TTTTAAATCTGTTCCCTAAAATATACTTTTTGAAC------------------GAG-------------------------A---------------------------------------G-AGTA------TATATGTATGTATGCCGAGCAACTTCTAGTACCCCCTACTCAAT-A----TGTTTTTTTTTGGCTTAGTAAAATAATACATCTATATC
droWil1 scaffold_180708:152570-152690 - TTTATATATATA-T-ATAT---GAT-GTAGA---TATA---TATTTTTTAT----ATTTAAATTTTT----------------------TTAAAGTGA--TTTTTGTCAA-GGCTAG-AAAA-GCTT------TATTTT-------------------------------------------TTGTTT-----TGTTTTA---GTTTATGCGATATTTCTT
droVir3 scaffold_135:841-956 - TATATATATGTG-A-ACAT---AAC-TTATA-------------------TAATA------------------------------------CATATGA--CATACTGCCAGAC--AAATAAA-CGTA------ACTATTTATGTTTGAA-------ATCAAGATCACCAAAATAAATGATGATTT--T--AT--TT--------------------TACAA
droMoj3 scaffold_6308:1934837-1934961 - TTTATATATTAT-A-AAAA---AAA-T-----------------TACTTAAATTAAAGCTTAGGA------AATATTTGTAT-CCATAAAAAATATGA--TATATTTTTATGCATGG-TAAA-TTTA------ATTTTT---------------------------------------------A--------ATTTCTA---ATAAAAAAAATTATATAT
droGri2 scaffold_14906:7885716-7885837 + ATTATTATTTTT--TTTTT-----------------------A--TTTCAAGTTAATTTACAATT------ATCGAACCGGT-TAAACTAAATTTTAGCTTA--TAGATATTTATTG--------------------------------------------------------CTTAATTAACTGTTTTT---TTTTGTT----GTTAAAACATTTTTTTT

dme-mir-4951 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:17142422-17142602 + TTTGAA-AATCC-CTTCCTTTTCG----TACGT---ACAA-AAAAGCATCAGGT-TTTCGGGTGAGGTTTC--TGATGCTTTG---TCTCTTAAGTTTTTCCTAACAATT--------------------------------------AAA--C-----CCTATGTCGGTATTA-CGAATACCA-T------CAAAAAACCTCACCCACCAAATGTATGACCAGAGAGATAAAAA-T-TTCAATAAACAA-C------G-
droSim1 chr3R:4327111-4327287 - TTTCAAAAATCC-CTTCCTTTTCG----TACGT---ACAA-AAAAGCATCAGGT-TTTCGGGTGAGGTTTC--TGATGCTTTG---TCTCTTAAGTTTTCCCTAAAAATA--------------------------------------AGA--C-----CCTATGTCGGTATTT-CGAATACCA-T------CAAAAAACCTCACCCACCAAATGTATGACCAGAGAGATAAAAA-T-TTCAATAAA-------------
droSec1 super_6:4348795-4348971 - TTTCAAAAATCC-CTTCCTTTTCG----TACGT---ACAA-AAAAGCATCAGGT-TTTCGGGTGAGGTTTC--TGATGCTTTG---TCTCTTAAGTTTTCCCTAACAATT--------------------------------------AGA--C-----CCTATGTCGGTATTT-CGAATACCA-T------CAAAAAACCTCACCCACCAAATGTATGACCAGAGAGATAAAAA-T-TTCAATAAA-------------
droYak2 chr3R:5943432-5943618 + TTAAAAAAATTCATTTACTTTACG----TGCGT---ACAAAAAAAGCATCAGGT-TTTCGGGTGAGGTTTC--TGATGCTTTG---TCTCTTAAGTTTTTCCTAACAACT--------------------------------------AGT--C-----CCTATGTTGGTACTA-CGAATACCA-AAT----CAAAAAACCTCACCCACCAAAAGTATGAACAGAGAGATAAAAA-T-TTCAATATAAAAAC------A-
droEre2 scaffold_4770:4529493-4529670 - T---------AT----------TGTACGTAAGC---ATTA-TTAAGCATCAGGT-TTTCGGGTGAGGTTTC--TGATGCTTCG---TCTCTTAAGTTTTCCATAACAATT--------------------------------------GGT--C-----CCTATGTTGGTATTA-CAAATACCA-TAC----CAAAAAACCTCACCCACCAAATGTATGAACAGAGAGATAAAAA-T-TTCAATAAAAAAATGTTGTCGA
droAna3 scaffold_13340:3794779-3794949 + T---------CT-CTACATTAATA----TTATC---ATGG-AAAAGCATCAGTTTTTTCGGGTGAGGTTATACTGATGCTTAG---TCATTTCAATTGCCCAAAATAATT--------------------------------------GAA--T-----TTT-AATTGGTATTTTTCAATACCC-A------AGACTAACCTCACCCACCAAATATATGAACAAAGAGATATAAA-T-TTCAATAAA-------------
dp4 chr2:5640393-5640558 + C---------CC-CGTCAATATTG----TAATT---AAAATAAAAGCATCCGAG-CTTCGGGTGAGGTTAT--GGATGCATTTTGATCTCTGCACTTATCTCCAA--------------------------AA-------------------CC-----CC--CTTTTGTATGGAAACATACCA-C-C----CAAATAACCTCACCCACCAAAT-TATGAACAAAGAGAAAAAAA-T-TTCAATAAA-------------
droPer1 super_19:1368761-1368939 + C---------CC-CGTCAATATTG----TAATT---AAAATAAAAGCATCCGAG-CTTCGGGTGAGGTTAT--GGATGCATTTTGATCTCTGCACTTATCTCCAA--------------------------AA-------------------CC-----CC--TTTTTGTATGGAAACATACCA-C-C----CAAATAACCTCACCCACCAAAT-TATGAACAAAGAGAAAAAAA-T-TTCAATAAACACAAAACCACG-
droWil1 scaffold_181130:16134997-16135163 + T---------AA-AT--CTTACTG----TTATC-----CA-AAAATCATCACGG-TTTCGGGTGAGGTTAG--TGATGACTTTTCCTTTTT----------CAAACAACTAA--AATTTTAATTCCAA---AA-------------------AC-----CC--TTTCGGTATAG-ACAATACCA-A------AAAAAAACCTCACCCACCAAATATATGAACAAAGAGAAACAAA-TTTTCA------------------
droVir3 scaffold_12822:1191963-1192168 - CTT--------------AATGTCG----TACGACTTA-TG-AGAAGCATCTAG--TTTCGGGTGAGGTTTTA-TGATGCAATTCTCGCTCT---ATCC-------CATCTTG--AACATACGTTCCAAAAT--AAATACATAATAAAAAAATCC-----CCTGCTTTGGTATTT-AAGCTACCA-ACCA---AAAAAAACCTCACCCACCAAATGTATGAACAAAGAGATAAAAAATTTTCAATACACCA-T------G-
droMoj3 scaffold_6540:33813435-33813629 - C---------CTCCTCCCAAGTTG----TACAGCTTG-TG-AGATGCATCAGAT-TTTCGGGTGAGGTTTTA-TGATGCAGTACTC--CAT---GTCCC-------ACTCCGAATACTAAAAT----------AA----------AAAGAATCCTTCTCCC--ATTTGGTATTA-AAGCCACCCAC-C----AAAAAAACCTCACCCACCAAACATATGAACAAAGAGATACAAAATATTCAATACAACAAC--------
droGri2 scaffold_15074:2653282-2653451 + T---------G----------TCG----TACGACT-AATG-AAATGCATCTAGT-TTTCGGGTGAGGTTTT--AGATGCGTT---------------TCCCCCAGAAAAT-----------------------A--------------AAA--C-ACT-CC-TTTTTGGTATTT-AAACTACAA-AAAAAAAAAAAAAACCTCACCCACCAAATATATGAACAAAGAGATAAAAT-A-TTCAATAAACCAACAAACCCG-

dme-mir-4952 CDS Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:18306519-18306675 + CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGTAGCGGGGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA
droSim1 chr3R:18115675-18115831 + CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGTAGCGGGGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA
droSec1 super_0:18660821-18660977 + CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATATTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGATTGCACGCCGCCATTCGAATCGGGTAGCGGGGATGATCTCATAACACCAGTCTACGTGCCGCCCACCAAGCA
droYak2 chr3R:19151970-19152126 + CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGAAGCGGAGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA
droEre2 scaffold_4820:9770831-9770987 - CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGAAGCGGGGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA
droAna3 scaffold_12911:5347592-5347748 + CTCCGGCGAGTGGCTATCCGGGTGCCCTGGACGATCTGATCTTCTCGGGAGCGGGATCCGGGTGCCGGGGCGATGACGAGGACGAGTGCACGCCACCCTTCGAGTCGGGCAGCGGGGACGACCTGATCACTCCGGTGTATGTACCGCCCACCAAGCA
dp4 chr2:13773155-13773311 - CGCCGGCCAGCGGCTATCCCGGCACCATTGACGATCTGATCTTCTCCGGGGCCGGGTCCGGGTGCCGCGGCGACGACGAGGACGAGTGCACACCGCCCTTCGAGTCGGGCAGCGGCGATGACCTCATCACGCCCGTGTATGTGCCACCCACCAAGCA
droPer1 super_0:6673715-6673871 + CGCCGGCCAGCGGCTATCCCGGCACCATTGACGATCTGATCTTCTCCGGGGCCGGGTCCGGGTGCCGCGGCGACGACGAGGACGAGTGCACACCGCCCTTCGAGTCGGGCAGCGGCGATGACCTCATCACGCCCGTGTATGTGCCACCCACCAAGCA
droWil1 scaffold_181089:2782020-2782176 + CGCCGGCCAGTGGCTATCCTGGGGCCATAGATGATCTTATATTCTCCGGTGCCGGATCCGGTTGTCGCGGCGACGATGAAGACGAATGTACGCCGCCCTTCGAGTCGGGCAGTGGAGATGATCTAATCACACCTGTCTATGTGCCTCCGACAAAACA
droVir3 scaffold_12822:645540-645696 - CGCCTGCGAGCGGCTATCCGGGCGCCATAGACGATCTGATCTTCTCCGGGGCCGGGTCCGGTTGTCGCGGCGACGACGAGGACGAATGCACGCCCCCCTTCGAGTCGGGCAGCGGGGATGACCTAATAACGCCCGTCTATGTGCCGCCCACCAAGCA
droMoj3 scaffold_6540:33300209-33300365 - CGCCGGCTAGTGGCTATCCGGGCGCCATAGACGACCTGATCTTCTCCGGAGCCGGATCTGGGTGTCGCGGCGACGACGAGGATGAATGCACGCCGCCCTTCGAGTCGGGCAGTGGGGATGACCTGATCACACCCGTCTATGTGCCGCCCACCAAACA
droGri2 scaffold_15074:3142694-3142850 + CGCCGGCGAGTGGTTATCCGGGTGCGATAGACGATCTGATCTTCTCCGGTGCGGGATCCGGGTGTCGCGGCGACGATGAGGACGAATGCACGCCGCCCTTCGAGTCGGGCAGCGGGGATGATCTAATTACGCCCGTCTATGTGCCACCCACCAAACA

dme-mir-4953 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:18599846-18599969 + CGTAAGAATA-------------TTG-------CACTAAAGTTCACAGGCGACCATGA-AT---GTTAATAAAG----A--------ATAT---------------------TTACCAATAAAGTTTTATTTTTTATTGAAGGTCATGGACATCCTTGAACCGATTTTGCAACATG-----CATGT
droSim1 chr3R:18412164-18412275 + CGTAAAAATA-------------TTG-------CACGAAAGTTCGCAGGCGACCATGA-AT---GTTAATAAAG----A--------ATAT---------------------TTACCAATAAAGTTTTGTTTTTTATTAAAGGTCATGGACATCCTTGAACG--------------------GTGT
droSec1 super_0:18960705-18960813 + CGTAAAAATA-------------TTG-------CACGAAAGTTCGCAGGCGACCATGA-AT---GTTAATAAAG----A--------ATAT---------------------TTACCAATAAAGTTTTGTTTTTTATTAAAGGTCATGGACATCCTTGAACG--------------------GTGT
droYak2 chr3R:19450585-19450700 + TGCTCAAATT-------------TTG-------CACGAAAGTTCGATGGCGACCATGA-AT---GCGAATGAAG----A--------ATAT---------------------TTACCATTAGTGTTTTGCTCATTATTGAAGGTCATGGACATCCTTGA-----TTTTGCAAAATG--------TT
droEre2 scaffold_4820:9473651-9473779 - CGCTAAAATA-------------TGG-------CACGAAAGTTCACTGGCGACCATGA-AT---GTTAATAAAG----A--------ATAT---------------------TTACCATAAAGATATGTTTTTTTATTGAAGGTCATGGACATCCTTGAACCGATTTTGCAATATGTTCTACGTGT
droAna3 scaffold_13340:12717426-12717507 - GGGGAAAAAA-------------TGA-------AAAGAA-----ACAAATGACCTTAGTAGGTCAGTGACTAAATTTTTGCCCATAA----GT-----------------------------GATTTAATCGTATATCAA----------------------------------------------
dp4 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12822:414561-414651 - TGCAAGCAAA-------------TTT-------TGCCTAAGTTCTGA------------------CTAATAACT----A--------ATGT---------------------ATGTACTTAATGTTATTGTGATAAATTAATGTTATTTGTAACCAA------------------------AATGT
droMoj3 scaffold_6540:33042485-33042630 - CGTAGTTTGACCACATAGAGACATCAAGTCTAAGAGGAAAACTCA--------TTTGG-AC---ACTGATTAAAAATCAGTCCCGAT----GAGAGCGAT------------AT---ATTAACATTAATTTTCTTATTGCATTTTACGTATATTTTTTTTTTGCTTTTAACA---------TACAT
droGri2 scaffold_15074:3394740-3394844 + GTATGATACA-------------------------TTAAAGTTCTCCATAATCAATTT-GT---GT-------------------------GTGTGTGTGTCATCGACAAATTTACCATCTTAACTACACTTATTTTCAAAAT-------------------A-TTTCACATA--------TATTT

dme-mir-4954 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:1923021-1923142 - ATATAAGTGTTCG--------ATTTGGCGCTTGGAATCGATACCCGAGCCATGATAGATTGAAGTCAA-CCCA-ATC----G----------ATC-GC-GGT-TCGAGTGCTCGAGTCTTGTGCGCCGGCATGC-TTGAGAT---GTCCACTA
droSim1 vgb65a08_5.b1:263-385 - ATATAAGTGTTCG--------ATTTGGCGCTTGGAATCGATACCCGAGCCCTGATAGATTGAAGTCAA-CCCA-ATC----G----------ATC-GC-GGT-TCGGGTGCTCGAGTCCTGTGCGCCGGCATGC-TTGAGAT---GTCCACTA
droSec1 super_10:1708076-1708197 - ATATAAGTGTTCG--------ATTTGGCGCTTGGAATCGACACCCGTGCCCTGATAGATTGAAGTCAA-CCCA-ATC----G----------ATC-GC-GGT-TCGGGTGCTCGAGTCTTGTGCGCCGGCATGC-TTGAGAT---GTCCACTA
droYak2 chrX:6403257-6403382 + ACATAAAAGTTCA--------ATTTGGCGCTTGGAATCGTAACTCGAGCCCTCAAAGATTGAAGTCAAATGCA-ATC----G----------ATCCGG-GGTGTCGAGTGCTCGATTCTGGTGCGCCGGCATGCTTTGAGAT---GTCCACTA
droEre2 scaffold_4644:1895276-1895400 - ATATAAGTGTTCG--------ATTTGGCGCTTGGAATCGAACCTCGAGCCCTGACAGATTGAAGTCAA-CCCAAAAC----G----------ATC-CCGGGG-TCGAGTGTTCGAGTCCGGTGCGCCGGCATGCTTTGAGTT---GTCCACTA
droAna3 scaffold_12929:1917028-1917098 - ATATCCTTGACTT-------------------------CATAA-GGAACAATGA---------------------------------------TC-AT--GT--------------TAAGGTTCTCAGGCATGTCTCGAGATTATATCGAATC
dp4 chrXL_group1a:2597066-2597203 - ATATAAATACATACTGCATAGTGTAGCAGAATGGACTCGGAACTCGATCCATGCATGCCACATGCCACATGCC-ACATGTCGCAGAGGGGGCAGC-GT-GGC-TCGAGTGCCAGAGTCCGGCGAG-------GC-ATGAGAC---TACTTACC
droPer1 super_28:1034311-1034357 - A--------------------------------------------------------------------------------------------GC-GT-GGC-TCGAGTGCCAGAGTCCGGCGAG-------GC-ATGAGAC---TACTTACC
droWil1 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:2911987-2912050 + ATATATGTGTGTG--------TGTTTGTGTATTGTATTTAGATTTGAGCTATAAAATGTTTAATAAAA-CTCA--------------------------------------------------------------------------------
droGri2 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------

dme-mir-4955 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:2438757-2438956 - T--T-GCTGATGTCAA-----ATCACCGATTTGCTTCCCCT-TTT----------------------------------TCCGTGCGCGGAGAAAAAAATCCCCAGAAACATAATATCAGGATGCTCTCTATC------------------------TCTGTCTCTGTCTAACGCTTA-----ATTGTTGCT-CAATTGCGAATTAATGTC------------------------------------------------------TGGGGCTTTTTTT---CTCCGTGCAGTGCCATAGCCGTA------------------------------------------------------------A-CCAC------------------------AACCTGCCAGCCGT-TTAAAGC
droSim1 chrX:1743323-1743545 - T--T-GCTGATGTCAA-----ATCACCGATTTGTTTCCCTT-TTT----------------------------------TCCGTGCGCGGAGAAAAAAATCCCCAGAAACATAATATCAGGATGCTCTCTATATCTATCTCAGTCTGGGCCCAAGTGTCTGTCCCTGTCTGACGCTTA-----ATTGTTGCT-CAATTGCGAATTAATGTC-------------------------------------------------------GGGGCTTTTTTT---CTCCGTGCAGTGCCATAGCCGTA------------------------------------------------------------A-CCAC------------------------AACCTGCCAGCCGT-TTAAAGC
droSec1 super_10:2212704-2212927 - T--TTGCTGATGTCAA-----ATCACCGATTTGTTTCCCCT-TTT----------------------------------TCCGTGCGCGGAGAAAAAAATCCCCAGAAACATAATATCAGGATGCTCTCTATATCTATCTCAGTCTGGGCCCAACTGTCTGTCCCTGTCTGACGCTTA-----ATTGTTGCT-CAATTGCGAATTAATGTC-------------------------------------------------------GGGGCTTTTTTT---CTCCGTGCAGTGCCATAGCCGTA------------------------------------------------------------A-CCAC------------------------AACCTGCCAGCCGT-TTAAAGC
droYak2 chrX:5905985-5906183 + T--T-GCTGATGTG-------TTCACCGATTTGTTTCCCCT-TTT----------------------------------TCCGTGCGCCGAGAAAAAAATCCCCAGAAACATAATATCAGGATGCTCTC----------------------------CCTGTCTCTGTCTTACGCTTAATTTAATTGTCGCT-CAATTGCGAATTAATGTC------------------------------------------------------GGGGGCTTTTTTT---CTCCGTGCAGTGCCATAGCCGTA------------------------------------------------------------A-CCAA------------------------AACCTGCCAGCCGT-TCAAAGC
droEre2 scaffold_4644:2389120-2389318 - T--T-GCTGATGTG-------TTCACCGATTTGTTTCCCCT-TTT----------------------------------TCCGTGCGCTGAGAAAAAAATCCCCAGAAACCTAATATCAGGATGCTCTCTGTCTC----------------------CCTGTCTCTGTCTCACGGCAA-----ATTGTTGCT-TAATTGCGAATTAATGTC-------------------------------------------------------GGGGCTTTTTTT---CTCCGTGCAGTGCCATAGCCGTA------------------------------------------------------------A-CCAC------------------------AACCTGCCGACCGT-TTAAAGC
droAna3 scaffold_12929:2354513-2354742 - G--T-GTTTCTTCCAA-----ATCTTCACTTCTCTTCTCTTTTCTTTTCTTTCCTTCTTCTGTTTTTTTTTTTTGTTGGTCCCTGCACGGAGAAGAAGTTGTTAGGACA-------TT-----------------------A----------------------------------------------------GAGTGGACCTTAG---TGTGGTTAATAGATCATATGACTCATTGTCCTTGCAATT--ATTTCACAACTCGCT-CCAC-TTTTCT---CTCTGTGCAGTGCCATAACCGTA------------------------------------------------------------A-CCAC------------------------AACCTGCCAGCCGT-TCAAAAA
dp4 chrXL_group3a:2134676-2134849 - TTTC-GCTGATTCGGGAATATATTCTCCACCCCCCCACCCT-CTACCA--TTTC-------------------------CTCTTCTGCTGACCTA----------------------CACGATTTTCCCCCTC----------------------------TCTCTT---------------------------------------------------------------------------AACGATCTTAACGCTCCACTCTTT-CTGT--CTCTCTCGATTTTTGCAGTGCCATAGCCGTA------------------------------------------------------------AAACAC------------------------TGTCTTCCTACCGT-TTACCGT
droPer1 super_13:248212-248305 - T--C-TCTGG--------------------------------------------------------------------------------------------------------------------------C------------------------TCTGTCTCTGTCTCAGGCGTA-----ACAGGTGCGTTGAGTGCATTTCAATTGT-------------------------------------------------------ATGGATA---------ATTGTGCTGTATTGTAATTGAA------------------------------------------------------------ATCCAC------------------------AA--------------------
droWil1 scaffold_181096:12164007-12164188 - T--C-GCTGATTTTGGAAAACATTTCTTATTTGCTCTCCTT-TAATTTATGTTTTT---------------------------------------------------------------------------------------------------------------------TTTTT-----GTTGTTGTT-CTTTTGTATATTTTT----------------------------------------------------------TATGT--TTATT---TTGTTTGCAGTGCCATAA-CATAATAATAGTTAATACTTATTGTGTTCACACAAAAATTTTGGGCCGCCGAATCGAAAACGAAT-------------------------------------------ATCAAAAC
droVir3 scaffold_12928:1476007-1476072 - T--T-T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTT---TTACTTGCAGTGCCATAAACATCGTA---------------------------------------------------------A-CCTTTTT-C--TTTCTTTATCACGTCTAAACGC---------------AT
droMoj3 scaffold_6473:13536163-13536218 + C--G-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTC---TCTCTTGCAGTGCCATAAACATCGTA-------------------------------------------------------------AT-------------------------TTTTTTCATTTAT-TTACGTC
droGri2 scaffold_15203:8273975-8274075 + AATA-GCTGAA-----------------ATTTGTTTTCCTC-A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTGCAGTGCCATAAACATCGTA---------------------------------------------------------A-CCTTTTTTCTTTTTTTTTCTTACGTCAAAACGCATCGATCGCATCAGAGG

dme-mir-4956 CDS Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:6979754-6979901 - GAGTGCCAACAATTTAGGGG---------GCGGCAACATGTGCCACCTGCCGCCGATGGCCAGCAACAACTCGCTGAATAATCTCTGCGGATTGTCGCTGGGCAGCGGTGGTAGTGATGATCTCATG------AACGATCCTCGGGCAAGCAACACCAACCTG
droSim1 chrX:5492772-5492919 - GAGTGCCAACAATCTAGGGG---------GCGGCAACATGTGCCACCTGCCGCCGATGGCCAGCAACAACTCGCTGAATAACCTCTGCGGATTGTCGCTGGGCAGCGGTGGTAGTGATGATCTCATG------AACGATCCTCGGGCAAGCAACACCAACTTG
droSec1 super_24:199934-200081 - GAGTGCCAACAATCTAGGGG---------GCGGCAACATGTGCCACCTGCCGCCGATGGCCAGCAACAACTCGCTGAATAATCTCTGCGGATTGTCGCTGGGCAGCGGTGGTAGCGATGATCTCATG------AACGATCCTCGGGCAAGCAACACCAACTTG
droYak2 chrX:14374793-14374940 + GAGTGCCAACAATCTGGGGG---------GCGGCAACATGTGCCACCTGCCGCCGATGGCCAGCAACAATTCGCTGAATAACCTCTGCGGACTGTCGCTGGGCAGCGGCGGTAGCGATGATCTCATG------AACGATCCCCGGGCAAGCAACACCAACCTG
droEre2 scaffold_4690:15890244-15890391 - GAGTGCCAATAATCTTGGGG---------GCGGCAACATGTGCCACCTGCCGCCGATGGCCAGCAACAATTCGCTGAATAACCTCTGCGGACTGTCGCTGGGCAGCGGCGGTAGCGATGATCTCATG------AACGATCCCCGGGCAAGCAACACCAACCTG
droAna3 scaffold_13117:2326296-2326455 - CAGTGCCAATTCCCTTGGCGGCGGCGGTGGCGGCAACATGTGCAACCTGCCGCCCATGACCAGCAACAATTCGCTTAACAATCTGTGCGGCCTGTCGCTGGGCAGCGGCGGCAGCGACGATCACATGCTT---AATGACCAGCGGCCGAGCAACACCAACCTG
dp4 chrXL_group1a:6391512-6391662 - CAGTGCCAATAATCTTG------------GCGGCAACATGTGCAACCTGCTGCCAATGACCAGCAACAATTCGCTTAGCAATCTATGCGGACTGTCGCTGGGCAGCGGCGGCAGCGATGATCACATGATGATGCACGATCAGCGATCGAGCAACACCAATCTG
droPer1 super_25:931278-931428 + CAGTGCCAATAATCTTG------------GCGGCAACATGTGCAACCTGCTGCCAATGACCAGCAACAATTCGCTTAGCAATCTATGCGGACTGTCGCTGGGCAGCGGCGGCAGCGATGATCACATGATGATGCACGATCAGCGATCCAGCAACACCAATCTG
droWil1 scaffold_180777:2984533-2984680 + CAGTGCCAATTCCCTTGGCG---------GTGGCAATATGTGCAATATGCCACCGATGGCCAGTAACAATTCATTGAACAACCTGTGCGGTCTATCATTGGGCAGCGGCGGCAGCGATGATCTTATG------AACGATCATCGTCCGAGTAATACCAATTTG
droVir3 scaffold_12928:60655-60799 - CAGCGCCAATTCCCTTG------------GCGGCAACATCTGCAATATGCCGCCAATGGCCAGCAACAATTCGCTGAACAATCTGTGCGGCCTATCGATTGGCAGCGGCGGCAGCGATGATCACATG------AACGATCAGCGCAACAGCAACACCAATTTG
droMoj3 scaffold_6359:1380681-1380818 - C-----CAATTCCCTCG------------GCGGCAACATCTGCAACATG---CCAATGGCCAGCAACAATTCGCTGAACAATCTGTGCGGCCTATCGATCGGCAGCGGCGGCAGCGATGATCTGATG------AACGATCAGCGCACAAGCAACACCAATTTG
droGri2 scaffold_14853:6692716-6692854 - CAGCGCCAATTCACTCGGCG---------G---A---CTCTGCAACATG---CCGATGGCCAGCAACAATTCGCTGAACAATCTGTGCGGCCTATCGATAGGCAGCGGGGGCAGCGATGATCTTATG------AACGATCCACGCAACAGCAACACCAATTTG

dme-mir-4957 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:15213971-15214085 - CTTTTTTTT--------------CTCTGCTC----GT-----------------------T--GTA--------TTTTACGCA--CTCTGCTGGCAGCG---CTGTCGGC---GTCGCTGCCAGCTGCCAGCAGCGAGCGGTACACTT--------GCAACTATC-----CTGT-GCACCCTACAATT
droSim1 chrX:11736931-11737042 - CTTTTTTTTTTTT----------CTCTGCTC----GT-----------------------T--GCA--------TTTTACGCA--CTCTGCTGGCAGCG---ACGCCGAC---AGCGCTGCCA-------GCAGCGAGCGGTACACTT--------GCAACTATC-----CTGC-GCACCCTACAATT
droSec1 super_56:101687-101796 - CTTTTTTTTT--T----------CTCTGCTC----GT-----------------------T--GCA--------TTTTACGCA--CTCTGCTGGCAGCG---ACGCCGAC---AGCGGTGCCA-------GCAGCGAGCGGTACACTT--------GCAACTATC-----CTGC-ACACCCTACAATT
droYak2 chrX:9414156-9414285 - TTTTTTT----------------CTCTGCTC----GTTTTTCTCTCTTTTTCTTCTCGCCT--GCA--------TTTTACGCA--CTCTGCTAGCAGCG---ACGCCGAC---TGCGCTGCCA-------ACAGCAAGCGGTACACTT--------GCAACTATT-----CTAT-GCACCCTACAATT
droEre2 scaffold_4690:11807313-11807440 + TTTTTT-----------------CTCCGCTC----GTTTTTCTCTCCTTTTCTGCTCGCCT--GCA--------TTTTACGCA--CTCTGCTGGCAGCG---ACGCCGAC---TGCGCTGCAA-------ACAGCGAGCGGTACACTT--------GCAACTATT-----CTGT-GCACCCTACAATT
droAna3 scaffold_13117:1427273-1427395 - ATTTTTCTTC---CCATGCAACC-TGTGTCC----AT-----------------------TGTACG--------TTTTACGCA--CTCTCC--CCAGCA---ACACCGCC---GCCGATAGCG-------ACTGCGACGAGTACGTTG--------GCAGCGGCACTTGACTCT-TTTTGCGGCAATT
dp4 chrXL_group1e:12152468-12152588 - CTTTAGCTTT---TTG--------------CGTTTGCGTTTGCCCCGATTTCAATGCA-AT--GTG--------TTGTACGCA--CACGGGTT---TTT---ATCTCAGC---TGTGGGATGA-------ACGGC--CCGAGACACTT--------GC--CGATG-----CGGC-GA-CCC--CAGGC
droPer1 super_14:1456573-1456693 + CTTTAGCTTT---TTG--------------CGTTTGCGTTTGCCCCGATTTCAATGCA-AT--GTG--------TTGTACGCA--CACGGGTT---TTT---ATCTCAGC---TGTGGGATGA-------ACGGC--CCGAGACACTT--------GC--CGATG-----CGGC-GA-CCC--CAGGC
droWil1 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12928:4095173-4095244 - CTCTTTATTG---CAA--------------------------------TGCGAC-----------------------TACGCATGATTTAGGCGCAGGT---TGGTCG----------------------------------ACACTT--------GCATTGGTT-----GC--------AAGTACTT
droMoj3 scaffold_6680:3750941-3751063 - TTTGTTTTTG---TTT-----------TCTT----TT-----------------------T--GTAGCCTAGGAATTTACC-----TCTTGTGGCATATCAGCTGTTGGC---TTTGGTTGCA-------AACACACG--TTGACTTTTCACACACAGAATTCTG-----TTGAAATGTTTAACACTT
droGri2 scaffold_14853:566008-566117 + CTCTTTTATT----------------------------------GCAATGAGACTGCG-AC--GCA--------TGATTTGGG--CGCAGG-------T---CTATCACCACTTGCACTGACG-------ACTGCTTTTGCTTTTGCT--------ACTACTTTT-----ACTT-GCCAGCGGAACTT

dme-mir-4958 CDS Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:15974940-15975104 - GTCCG------------------------------------A------ACCGTACGATCTCT--------------------------------GGCAGCTGCAGTTCCGTTT------CCGGAGCGGGATCTGGAACGGGCTCTGGTTCTAGATCAGGATCCAATCATGCACCCGGTCCAGGTACCGCTCCAGGTCCCGTTCCCGGAAACGGTGCCACCGCCAATGCAGCTGCAGCGGCATTCA
droSim1 wgm54c09.g1:392-557 + GTCCG------------------------------------A------ACCGCACGATCTCT--------------------------------GGCAGCTGCAGTTCCGTTT------CCGCAGCGGGATCTGGGACGGGCTCTGCTTCTAGATCAGGATCCAATCATGCACCCGGTCCAGGTGCCGCTCCAGGTCCCGTACCCGGAAGCGGAGCCACCGCCAATGCAGCTGCAGCGGCATTCA
droSec1 super_47:33133-33297 - GTCCG------------------------------------A------ACCGTACGATCTCT--------------------------------GGCAGCTGCAGTTCCGTTT------CCGCAGCGGGATCTGGCACGGGCTCTGCTTCTAGATCAGGATCCAATCATGCACCCGGTCCAGGTGCCGCTCCATGTCCCGTACCCGGAAACGGAGCCACCGCCAATGCAGCTGCAGCGGCATTCA
droYak2 chrX:10123735-10123899 - GTCCA------------------------------------A------ATCCCACGATCTCT--------------------------------GGCAGCTGCAGTTCCGTTT------CCGCAGCGGGTTCTGGAACGGGCTCTGGTTCTGGATCCGGATCCAATATGGCATCCGGTCCTGGTACCGCTCCAGTTCCCGTACCCGGAAACGGTGCCACCGCCAATGCAGCTGCAGCGGCCTTCA
droEre2 scaffold_4690:11103030-11103194 + GTCCA------------------------------------A------ATCCCACGATCTCT--------------------------------GGCAGCTGCAGTTCTGTTT------CCGGAACGGGTTCTGGAACGGGCTCTGGTTCGGGATCCGGATCCAATCTGGCACCCGGTCCTGGTACTGCTCCAGTTCCCGTACCCGGTAACGGTGGCACCGCCAATGCAGCTGCAGCGGCATTCA
droAna3 scaffold_13165:312527-312640 - GCATA------------------------------------A------GCCACATGGACTCT--------------------------------G---------------------------------------------------------GATCAGGCTCCGTATCTGCGTCAATTTTGGGCACCGGTCCAGGCCCTTTACATGGAAATAGTGCGACCTCGAATGTCTCTTCTGCACCCTTTA
dp4 chrXL_group1e:9575758-9575916 - GCCCC------------------------------------A------ATCCCAATGCCAGC-----------------------------AACGGCAGCTGTGGCTCCGCCTCTGCCTCCGGTTCGTCCAGTGGCTCG-GCACCGGCTCCGGCTCAGGGTCAGACTCAGGCCACGACTCAGGCACCG-----------ACTCACGGCAACACTTCGG---CCGGTGGCACAGCCTCGGCGTACT
droPer1 super_22:633193-633346 + GCCCC------------------------------------A------ATCCCAATGCCAGC-----------------------------AACGGCAGCTGTGGCTCCGCCT------CCGGTTCGTCCAGTGGCTCGGCACCGGTTCCGGGCTCAGGGTCAGACTCAGGCCACGACTCAGGCACC-----------AGCTCACGGCAACACTTCGG---CCGGTGGCACAACCTCGGCGTACT
droWil1 scaffold_181096:10624772-10624892 + CTGCATCATCGGCATCGCCAACTTATCAGAAGGGCAGTCCGAATCCAAATCCCAAT---------------------CTGAATGCAAATGCAACGGC--------------------------------------------------------------------------T------------------------------GGTGGCTCTGGAGCCAGTTCATCTGCTGCCACCGCTGCCTTTA
droVir3 scaffold_12472:523224-523310 + GCCCG------------------------------------A------ATCCCAATGGCGGT--------------------------------GGCTCCAGCGGTGCC------------------------------------------------------------------------------------AGTCTATCTGGCAGTAACAATGTGACTGCCACCGCTACAGCCGCCGCCTTTG
droMoj3 scaffold_6308:2944361-2944510 - GCCCG------------------------------------A------ATCCCAATGGCGGCGGCAGCGGCGCCGGTGG--------------------CGGTGGCGGTGCCGCTGCTGCTGGCTCCAACGGTGGC------------------------GGAAGTCT---------CTCGGGCAGCAGCAGCAGCAATGCAGCCACAGCCAATGCTACAGCCACCGCCGGTGGCGCGGGCTTTG
droGri2 scaffold_15203:4433131-4433217 - GCCCG------------------------------------A------ATCCCAATGGCTGT--------------------------------GTCTCCAGCGGTGCC------------------------------------------------------------------------------------AGTCTCTCTGGCAGCAACACTGTGACTGCCACCGCTACTGCCGCCGCCTTTG

dme-mir-4959 CDS Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:19063148-19063296 - TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
droSim1 chrX:14724057-14724205 - TGCTCATGGCCCTGATGTCCGGCTTGAACCTTCTGTGCCGGCTGGCCATGATCTGCAGCAGGTACCTCCGAGAGCAGATGATACGCAGCCAGCTGCGTTTCATGACCAAGCGGCATGTGAAGCGTGCCCTGCGTGACCTGACCATCGGC
droSec1 super_8:1352288-1352436 - TGCTCATGGCCCTGATGTCCGGCTTGAACCTTCTGTGCCGGCTGGCCATGATCTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGCTGCGTTTCATGACCAAGCGGCATGTGAAGCGTGCCCTGCGTGACCTGACCATCGGC
droYak2 chrX:17654811-17654959 - TACTGATGGCCCTGATGTCTGGCCTAAATCTCCTCTGCCGGCTGGCCATGATCTGCAGCGGGTATCTTCGGGAGCAGATGATACGCAGCCAGTTGCGGTTCATGACCAAGCGGCATGTGAAGCGCGCCCTGCGCGACCTCACCATCGGC
droEre2 scaffold_4690:9326382-9326530 - TGCTGATGGCCCTGATTTCCGGCCTGAACCTCCTCTGCCGGCTGGCCATGATCTGCAGCAGGTATCTACGGGAGCAGATGATCCGCAGCCAGCTGCGGTTCATGTCCAAGCGGCATGTGAAGCGCGCCCTACGGGACCTCACCATCGGC
droAna3 scaffold_12903:667658-667806 + TCCTGATGGCCCTGATGTCCGGCCTGAATTTGGTCTGTCGCGTGGCGATGATTATCAGCAAGACCCTAAGAGAGCAGATGATCCGGAGCCAGTTGAGGTTCATGAAGAAGCGGCATGTCCAGAGGGCGCTGAGGGATCTGACGATCGGG
dp4 chrXL_group1e:10756223-10756371 - TCCTGATAGCCATCATATCCGGCGTGAATATCCTCTTCCGGCTGGCCATGCTGTCCATCAAGAGTCTGCGCGAGAAGATGATCCGCAGCCAGCTGTCCTTCATGACCAAACGACATGTGCAGCGGGCCCTGCGCGACCTCACCATCGGG
droPer1 super_14:190427-190575 - TCCTGATAGCCATCATATCCGGCGTGAATATCCTCTTCCGGCTGGCCATGCTGTCCATCAAGAGTCTGCGCGAGAAGATGATCCGCAGCCAGCTGTCCTTCATGACCAAACGACATGTGCAGCGGGCCCTTCGCGACCTCACCATCGGG
droWil1 scaffold_181096:8247011-8247159 - TGCTGATGGCCATCATGTCGGGCCTCAATCTACTCTGTCGCCTGGCCATGATGCTGAGCAAGAGTGTGCGTGAGCAAATGATTCGCAGTCAATTGCGTTTTATGCCCAAACGGCATATCCAACGAGCTCTCAGGGATCTAACCATTGGC
droVir3 scaffold_12726:998444-998592 - TGCTGATGGCCTTCATGTCCGGCCTGAACCTGCTCTGCCGTCTGGCCATGATGCTCAGCCGGACGCTGCGTGAGCTGATGATACGCAGCCAATTGCGCTTCATGACCAAGCAGCATGTACAGCGCGTTTTCCGGGATCTAACCATCGGT
droMoj3 scaffold_6473:9166585-9166733 + TGCTGATGGCCTTCATGTCCGGCCTGAATCTGCTCTGTCGCCTGGCCATGATGCTCAGCCGGACGCTGCGCGAGCTGATGATACGCAGCCAATTGCGCTATATGACCAAACAGCATGTGCAGCACGTCTTCAGGGATCTGACCATCGGC
droGri2 scaffold_14853:5433396-5433544 - TCCTCATGGCGATCATCGCTGGCCTAAATCTGCTCTGTCGCCTAACCATGATGGTCAGCCGGACGCTGCGCGAACTGATGATTCGCAGCCAGTTGCGATTCATGACCAAAGAGCATGTGCAGCGCATCTTTAGCCATTTAACCATCGGC

dme-mir-4960 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:463920-464051 + TGGAGTGACCAGCACAACACAAGGCCTGCCGCCCAAGAA----------------------------------------------------------------------------------------------------------------------ACGCAAGCCCAGAAGTCCGGCAGTC----------------GAGAA----------------------TCACGAGGGACTGG-G------ACCTTGGGCTTACGGTTCTCAGTTTGGCTTGACATGCATCAGCATCAT
droSim1 chrX_random:776904-777034 + CGGAGTGACCAGCACATCACAAGGCCTGGTGCCCAAGAA----------------------------------------------------------------------------------------------------------------------ACGCAAGCCCAGGAGTCCGGCAGTC----------------GAGAA----------------------TCACGAGGGACTGGGG------CCT-T-GGCTTACGGTTTTCATTTTGGCTTGACATGCATCAGCATCAT
droSec1 super_10:310837-310968 + CGGAGTGACCAGCACATCACAAGGCCTGGTGCCCAAGAA----------------------------------------------------------------------------------------------------------------------ACGCAAGCCCAGGAGTCCGGCAGTC----------------GAGAA----------------------TCACGAGGGACTGGG-------GCCTTGGGCTTACGGTTTTCATTTTGGCTTGACATGCATCAGCATCAT
droYak2 chrX:383437-383616 + TGCAATGCCCACCACAACACAAGGCCTGATGCCCGAGAAT-CGGTTTATTTCCTCCTCT------------------T-------------------------------------------------------------------------------CCGCAGGCCCAGGAGTCCGGCAGTC----------------GAGCAGTCGAGCTGTTCACCCGGTCAGTCCTT-GGTCCTTGGTCCTTGGGCCTTGGGCTTTCGGTTTTCAGTTTGGCTTGACATGCATCAGCATCAT
droEre2 scaffold_4644:409107-409303 + TGCAATGACCCTCACCACACAAGGCCCGATGCCCGGGAAT-CGGTTTATTTCCTCTTCT------------------T-------------------------------------------------------------------------------CCGCAGGCCCAGGAGTCCGGCAGTCCGACAGTCCAGCAGTCCGGCAGTCGAGTTGTCGAGTAGTCCAGTCATGAGGGGCTGGGGCCTTGGGCCTTGGGCTTACGGTTTTCAGTTTGGCTTGACATGCATCAGCATCAT
droAna3 scaffold_12929:357992-358198 + TGGAATGACC---ACAGCAGAAGGCCTTCTGCCAA-GACTTGGGTGTAGATATGAGTGTGTGTGGGTGTGGGTGTGTTTT--GGCCAGAATATGGTGGGTGATTGTGCAGGGAGGCGTGGCAGATGGGGG-GGCG-------GAGGATGAAGAAGAAGCAGTAGCAGAGGAG--------------------------------------------------------------------G------CCTTTGGGGTTTCGGTTTTCAGTTTGACTTGACATGCATCAGCATCAT
dp4 chrXL_group1e:196231-196421 + TGGAATGACC---ACGGCACAAGGCCT--TG-CCAAGACT-TGTTTTATTTTTTGCTGA------------------TTTGGGGGCAGGAACT-GTAGGTGCCT--GCCGCGCGGGGAAGTAGAAGGGAAAGGCGTGGCTGCGAG---GACGCAGGAGGCTT-------------CGCAGGA----------------GAG--------------------------------------AA------CTTTTGGGGTTTCGGTTTTGAGTTTGACTTGACATGCATCAGCATCAT
droPer1 Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 scaffold_180777:2769923-2769983 + CAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGATTGACG------CCTTTGGGGTTTCGGTTTTCAGTTTGACTTGACATGCATCAGCATCAT
droVir3 scaffold_12970:10710181-10710231 + G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------CCTTTGGGGTTTCGGTTTTCAGTTTGACTTGACATGCATCAGCATCAT
droMoj3 scaffold_6473:10704148-10704209 - GGGG--------------------------------GGCTTGGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------CCTTTGGGGTTTCGGTTTTCAGTTTGACTTGACATGCATCAGCATCAT
droGri2 scaffold_14853:6069294-6069344 - G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------CCTTTGGGGTTTCGGTTTTCAGTTTGACTTGACATGCATCAGCATCAT

dme-mir-4961 three_prime_UTR Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:1267640-1267803 + AGATATTACC--CAGAAGCGA-----------------------TATC------------------------CAATAGTAGCCAA-CTCTCTCG--CTCTC--T----------A----TGT--GTATGTATGTATCTTG---------------CTATCC---------------ATATA--TGTATATCCATATCAGAGAGCCAGGATTGGTTGAGACCATACG------ATATAACCCGAAACCACACTGG-CC-AGGAATA---------------------------------------------GCAAATCCA
droSim1 wjj76b12.b1:303-467 + AGATATTACC--CAGAAGCGA-----------------------TATC------------------------CAATAGTAGCCAA-CTCTCTCG--CTCTC--T----------A----TGT--GAATGTATGTATCTTG---------------CTATCC---------------ATATA--TGTATATCCATATCAGAGAGCCAGGATTGGTTGAGACCATACG------ATATAACCCGAAACCATACTGG-CC-AGGAATA---------------------------------------------GCAAATCCA
droSec1 super_10:1091085-1091248 + AGATATTACC--CAGAAGCAA-----------------------TATC------------------------CAATAGTAGCCAA-CTCTCTCG--CTCTC--T----------A----TGT--GAATGTATGTATCTTG---------------CTATCC---------------ATTTA--TGTATATCCATATCAGAGAGCCAGGATTGGTTGAGACCATACG------ATATAACCCGAAACCATACTGG-CC-AGGAATA---------------------------------------------GCAAATCCA
droYak2 chrX:1175521-1175702 + AGATATAACC--GAGAAGCAA-----------------------TACC------------------------CAATAGTAGCCAA-CTCTCTCGCTCTCTC--TGCGTCTCTCTA----TGT--GTATGTATGTATTTCG---------------CTATCC---------------ATATA--TGTATATCCATGTCAGAGAGCCAGGATCGGTTGAGACCATACTATATCTATATAACCCGAAACCATACTGG-CC-AGGAATA---------------------------------------------GCAAATCCA
droEre2 scaffold_4644:1251466-1251631 + AGATATAACC--CAAAAGAAA-----------------------TACC------------------------GAATAGTAGCCAA-CTCTCTCG--CTCTCTCT----------A----TGT--GTATGTATGTATTTCG---------------TTATCC---------------ATATA--TGTATATCCATGTCAGAGAGCCAGGATCGGTTGAGACCATACT------ATATAACCCAAAACCATACTGG-CC-AGGAATA---------------------------------------------GCAAGTCCA
droAna3 scaffold_13117:1856374-1856503 - --------------------------------------------------------------------------------------CTCTCTCT--CTCTC--TGTGTCTCTCTAAATGCAT--GTATGTATGTGTTGTA---------------TTATCC---------------GTATATATGTATATCCATGTTAGAGAGCCAGGACGGGTTGAGATT----------------GCCCAAGA----ACTGG-CCTAGGAATA---------------------------------------------GCAAAT-CA
dp4 chr2:10126391-10126530 + GAATAAT--CCATA-AACAAA-----------------------TATC------TA----------------T-GTAGTCA-CAT-CTATCTCT--CTCTC--T----------A----TAT--ATCTCTCTCTCTCTTT---------------CTTTAT---------------TTGTA--CATGTATTTATTTCATGGGTTTAGTTTTGC---AAATGGTATA------AAACATCTCCAAAATACATT-------------------------------------------------------------------
droPer1 super_2:4840479-4840636 - TAATATATTG--GAGTAGCAA-----------------------TATC------------------------TATTTGTATTCAG-ATTTGTAT--TTATT--T----------A----TGT--GTTTGTGGTGATACAG---------------ATATATA--------------GTATA--TATAGAAATATATTTTAAAATCA---TAGGTACATACAGTATA------TTGTATCCCTATCCAATGCATA-T-----GTGA---------------------------------------------ACGTACTTA
droWil1 scaffold_180700:3267577-3267741 + AAATATCATA--CCCA-AAAA-----------------------TATA------------------------TACTACTACACAACCTCTCTCT--CTCTC--T----------C----TAT--CTATCTATCTATCTTTGAACATAAAATGTACCTAT--ACTAAAACAAAAACTCTATA--TCTAAATCGTTGTGCT-TACCATTCATTTTCTACTACTATACT------ATATAGGGCGAAAC-------------------------------------------------------------------------
droVir3 scaffold_12855:2148540-2148695 + ATA----ACC--CAAAAGATA-----------------------CCTC------------------------AATTTGCATATAT-ATCTATGT--CTATA--T----------A----GAT--ATATACATACATATAT---------------ATATAC---------------ATATA--TATATATAAATATATGTGTGCGTGCATTA----TCGTCTTGTG------ACTAGGTCCAGAACTTTACAGG-TG-CGCAGTG---------------------------------------------TCGAAATCA
droMoj3 scaffold_6496:26031347-26031515 + TGATGCCACC--CAGC------------------------------CC------------------------CCACCGCCTCCTG-CTCCCTCC--CTCTC--TATGTTTATATG----TGT--ATATGTGTGT---------------------GTGTCT---------------GTGTG--TTTGTGTCCCTTC--------------------GATTGGCG------------------------TGCCTGAAT-GGCTGTGAAAACACAGCCAGTTGCAGCTGTATCCACAATCATTATCACAAAAGCAAACTAC
droGri2 scaffold_14853:6570585-6570746 + AAAAACAAAA--AACAAACGAAGTAACAGCCCAAGCCGACAATGGCTGAATATATATGTTATGTATTTGTATT-ATTGTC------------GT--GTATA--T----------A----TATCTATATATGTATATTACA---------------CTAT---------------------------------------------------------ATACTATATG-----TATATATATATAGACAATGTCTG-AT-GGCTATG---------------------------------------------CCAAAGCCA

dme-mir-4962 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:3671399-3671553 + TGTGTTTGGTTGTTTTTCCTTTCTTTTC------------TCTCCGTCTCTCTCTTTC------------CCTCTCTCTGTT-TACATTGAGCTG-------TTTTGTCCGTGCAC----------GTGCTA---G---------------------ACGATGTAGAGAGTGAGG--GAGA---------------GAGCG---------------------AATAGAATAACAGCTCATTGTGCTGAG-CGCCCAGCC-T
droSim1 chrX:2692027-2692181 + TATGTTTGGTTGTTTTTCCTTTCTTTTC------------TCTCCGTCTCTCTCTTTC------------CCTCTCTCTGTT-TACATTGAGCTG-------TTTTGTCCGTGCAC----------GTGCTA---G---------------------ACGATGTAGAGAGTGAGG--GAGA---------------GAGCG---------------------AATACAATAACAGCTCATTGTGCTGAG-CGCCCAGCC-T
droSec1 super_13710:747-901 + TATGTTTGGTTGTTTTTCCTTTCTTTTC------------TTTCCGTCTCTCTCTTTC------------CCTCTCTCTGTT-TACATTGAGCTG-------TTTTGTCCGTGCAC----------GTGCTA---G---------------------ACGATGTAGAGAGTGAGG--GAGA---------------GAGCG---------------------AATACAATAACAGCTCATTGTGCTGAG-CGTCCAGCC-T
droYak2 chrX:4740636-4740793 - TGTGCTTGGTTGTTTTTCCTTTCTTTTC------------TCTCCGCCTCTCTCTTTC------------CCTCTCTCTGTT-TACATTAAGCGG-------TTTTGCCCGTGCAC----------GTGCTA---G---------------------ACGATATAGAAAGAGAGAGGGAGA---------------GAGCG--------------AA------TAACAATAACAGCTCGTTTTGCTGAG-CGCCCAGCC-T
droEre2 scaffold_4690:1061104-1061256 + TGTGTTTGGTTGTTTTTCCTTTCTTTTC------------TCTCCGTCT--CTCATTC------------CCTCTCTCTGTT-TACATTAAGCGG-------TTTTGCCTCTGCAC----------GTGCTA---G---------------------ACGGTATAGAGAGAGAGG--GAGA---------------GAGCG---------------------ATTACAATAACAGCTCATTGTGCTGAG-CGCCCAGCC-T
droAna3 scaffold_13337:5571517-5571673 - TGTGTTTTTGTTTTTGTTGTCTCTGTTT------------TCTTCGCCTTTTTTTTC-------------TC-ATTTTTG-------TGGAGCTTTGCATGCCCGGCTGCAGGAGT----------GTTAGT---GAGTGGTTTGACTTGTTTTGCGGCAGCAGGCAGCACACGC--GCTG---------------CTGT-------------------------------------CGCCGTCGCCGC-TGTCTAGC---
dp4 Unknown_group_658:20580-20732 - TACATTTTTCCACTTGCCCACACTTTTCGCTGCGCT----GCTCTCTCGCTCTCTCTCTCTCTCATGCTCTC-------ACT-CTCAGAAAGCTG-------TGCAAT------------------GCACCATGCG---------------------ACGACTGAAAGCATGAGA--GTGA---------------G--CC--------------AG---CTTTCAGTGTGGCAGTTTTTTTCGTTG--------------
droPer1 super_23:1560592-1560751 - GTTTCTCTGCCTCTCCCTCTC-------------------------TCCCTCTCTCTCTCTCTCGCTGTCTTCCTCTTTCTC-AACTATGTGTGG-------CCATGTGTGTGTGT----------GTGTGT---G---------------------TGTGGGTTGTATCTGTGT--GTGA---------------GAGCG-------------AAGCG---CAGACAATTAGT-TTTATTATGCTTTGTTGCCGAGCTTC
droWil1 scaffold_181096:11652056-11652210 + TCTGTTTGTGAGGGTCCCTCTCTTTTAC------------TCTCTGTCGCTCTCTCTC------------TCTCTCGCGCTG-CACAAAAAAATTAG-----TCATACC-AAAAACAAAATACAGATTGCAA---A---------------------GCAATAGAGAGAGAGAGG--GAGA---------------GAGAG---------------------AGA------GTAAGTGAGTGTG-AGAG-CGCCCA-----
droVir3 scaffold_12855:8711965-8712121 + TCTCTTTCTTTATTTCTCTGCTT--TTCTCTGTCTCTCTTTATCTGTATCTCTCTCTC------------TTTCTCTCTATTTTCTATTGCTCTG-------TTATGTC-AAACATTTGCTGCATACTTTCA---G---------------------GCGATATTAAAAGCGTGC--AAGA---------------TTTTC---------------------ATTTGTATAACTGCGTATT--------------------
droMoj3 scaffold_6496:4311996-4312145 - TGTCTCTC--TATTTCTCTCTCTCTCTC------------TCTCTCTCTCTCTCTCTC------------TCTCTCTCTGCC-TGCCTTCA---C-------TTTTATACAAA---------------AATA---A---------------------TGGCCATCAAAATTAATA--AAAACGTAATCAGAGCGAATGACTACAGAGGAAAACGAAAAG--------TATAAAAG-------------------------C
droGri2 scaffold_15203:9842081-9842230 + TCCCTTCTCTCTCTC-------------------------TCTCTCTCGCTCTCTCTC------------TC------TCTC-TCTAT----TTG-------TCTCTTCCGCATA-----------GCGCAA---G---------------------TCGACGTCGGGGCTGACG--GGCA---------------GCGTTTCACAGGAGAATCGGGTGACTATCACCCTGATTGC-TGTTGTGCTG-C-TGTTCATCG-T

dme-mir-4963 three_prime_UTR Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:5684770-5684909 + CACCCACTGCGAATTGCTGTAGGAAAT-------TTTTT-GGGGTACTTCTGGTTTCATAACGCAGAGAATCATC-----------AGCGTGAAGGAATGATTCTCTGCGGGCTGGAACCAGAAGTCCTGCAAATGTTCTTTTACGGATTTTAA---CCAGG
droSim1 chrX:4425250-4425396 + CACCCACTGCGAATTGCTATAGGAAATGATGGAGTTTTT-GGGGTACTTCTGGTTTCATACTGCAGAGAATCTTC-----------AGCGTGCAGTAATGATTTCCTGCGGGCTGCAACCAGAAGTCCTGCAGATGCTCTTTTACGGATTTTAA---CCAGG
droSec1 super_4:1079282-1079434 - CACCCACTGCGAATTGCTATAGGAAATGATGGAGTTTTT-GGGGTACTTCTGGTTTCATAACTCAGAGAATCTTCATGATTTCTTAATCA-----TAATGATTTCCTGCGGGCTGCAACCAGAAGTCCTGCAGATGCTCTTTTACGGATTTTAA---CCAGG
droYak2 chrX:2788911-2789034 - CACCCACTGCGAAATGCTATAGGACATGATGGAGCTTCTGGAGGTACTTCTGGTTTTATAATGCAGAGAATCGTA-----------ATCGTGAAGGAATGATTCTATGCGTACTGAAATCGGGAGTCCTGCAGAT---------------------------
droEre2 scaffold_4690:3033374-3033523 + CACCCACTGCGAAATGCTATAGGAAACGATGGGGTTTCT-GGGGTACTTCTGGTTTTATAACGCACGGAATCTGA-----------ATCGTGAATGAATGATTCCTTGCGGACTGGAACCAGAAGTCCTGCAGAGGCTTCTTGAATGATTTGAAGTTTCGGA
droAna3 scaffold_13117:1117754-1117783 + CACCCACTGCGACGTACTTTAGAGAGTTGT------------------------------------------------------------------------------------------------------------------------------------
dp4 chr3:13862643-13862665 + CACCAGCTGTGGGCTGCTTTAGG-------------------------------------------------------------------------------------------------------------------------------------------
droPer1 super_4:1457976-1457998 - CACCAACTGTGGGCTGCTTTAGG-------------------------------------------------------------------------------------------------------------------------------------------
droWil1 scaffold_181096:7345062-7345085 - AACCCACTGTGATGTCCTGTAAAA------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13324:2924689-2924720 + CACGGCCTGTGGTGTGCTATAAATTTT------------------------------------------------------------------------------ATGTG----------------------------------------------------
droMoj3 scaffold_6496:13805954-13805976 - CACCGACTGCGGCGTCCTCTGAG-------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15112:3786307-3786359 + CACCAGCTGCGGCGTGCTATAAATTC--------TTTTC-GTTGTATTTCTGGGTGTTCAAC----------------------------------------------------------------------------------------------------

dme-mir-4964 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:8859818-8859960 + TCGCCATGCTTCGACAATT----------------------------TT---------------------------TGAATGGTCCTTTT----------CATGCCCAAGG---------------------CGAATAAATAT------------GTATTTATGTATATTTTTTTATATGGTACGTATTTATTTGTCTGCAAATGGCTGCCAAG-----------------------------------GAGT---------------------GCTACATAATCAATTTGTTTG-TT
droSim1 chrX:7057967-7058102 + TCGCCATGCTTCGACAATT----------------------------TT---------------------------TGAATGGTCCTTTT----------CATGCCCAAGG---------------------CGAATAAATAT------------GTATTTATGTATATATATTTATA-------TACGCATTTGTCTGCAAATGGCTGCCATG-----------------------------------GAGT---------------------GCTACATAATCAATTTGTTTG-TT
droSec1 super_34:222375-222488 + TCGCCATGCTTCGACAATT----------------------------TT---------------------------TGAATGGTCCTTTT----------CATGCCCAAGG---------------------CGAATAAATAT------------GTATTTATGTTTATATATT-----------------------------TGGCTGCCATG-----------------------------------GAGT---------------------GCTACATAATCAATTTGTTTG-TT
droYak2 chrX:12451967-12452096 - TTGCCATGCTTGGACAATT----------------------------TT---------------------------TGAATGGTCCTTTT----------CATGCCCAAGG---------------------CGAATAAATAT------------GTATTTATGTGTAGATA-------------TATGTATTTGTCTGAAAATGGCTGCCAAG-----------------------------------GAGT---------------------GCTACATAATCAATTTGCTTA-TT
droEre2 scaffold_4690:6251913-6252052 - TTGCCATGCTTGGACAATT----------------------------TT---------------------------TGAATGGTCCTTTC----------CATCCCCAAGG---------------------CGAATAAATATGTTTGTGTGTACGAGTATATATTTATA---------------TATGTATCGGTCTGCAAATGGCTGCCAAT-----------------------------------GAGT---------------------GCTTCAAAATCAAATTGTTTG-TT
droAna3 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp4 chrXL_group1e:8134181-8134346 + TTTCCATGCTTGGACAATT---------------------------CTT---------------------------TGAACGGTCGTCCCT----TTTTGCCAGCCCAAGGGGGGAGGGATGGGGGGGGGGGGGAATAAATAT--------------ATCAACAA----AAA-------------TAC--------------------------TCGTAAGGCGAATAATGGCAACGTCTGGGGTGAGC----GATTGAGAGTTGTATCTGGAAGCTATATAATC-------------
droPer1 super_13:433852-434017 - TTTCCATGCTTGGACAATT---------------------------CCT---------------------------TGAACGGTCGTCCCGCCCGGTTTGCCAGCCCAAGGGGC----GGCGGGGGGAGGGGGGAATAAGTAT--------------ATCAACAA----AAA-------------TAC--------------------------TCGTAAGGCGAATAATGGCAACGCCTGGGGTGAGC----GATTGAGAGTTGTATCTGGAAGCTATATAATC-------------
droWil1 scaffold_181150:832777-832852 + ATGTCTTCCATTCCCTATT----------------------------TG---------------------------CGTATTTTCTT------------------TCAGTA---------------------TAAATGAATAT------------GTATGAGTCG----AAA-------------TAC--------------------------CTATA------------------------------------------------------------------------AATG-AT
droVir3 scaffold_12726:2732407-2732514 + TGGA------TCAACAAAT----------------------------GCCGCACATTTCTTTCTTGCTTTCGTTCACAATTTCTCTT------------------GTAATA---------------------TAATCAAT-TT------TT----ATTCAATTC-------------------------------------------------------------------------------------ATAC---------------------GATTCACATTCAATTCGTTTGACT
droMoj3 scaffold_6500:9117978-9118115 - CA----AGCTGCGACTATGTAATTAAAATTGTATGTATCAGCGGGTC-T-----------------------AT----------------------------TGCTATGTG---------------------TGTATAGGTGT------------GTGTGTGTGTGTATG---------------TGTGTGTATGTGTGCATATACAAAGCCAT-----------------------------------AATA---------------------GCATAAAACTCGATAAGCCTG-GC
droGri2 scaffold_15110:597989-598133 + TCGCCATATTTCGTTGAAT---------------------------T-C-----------------------TT----CGCCATATATCG----------TATGATTT---------------------------ATATATAT------ATATATAAATATATATATATATTTCGGCTCCAAATATTTTTTATATTTTGCAAAGACTTGCTGTG-----------------------------------G--TTTTTCATAAGTGAGTTTGAAT-----------------ATTG-TA

dme-mir-4965 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:16500125-16500242 + GTATTCGCAGTAC-AAGCACAAGGTGATCGATGGGAGATGA----GCGCCTGA--TGTGATGATGAAGTAGATCGATCACACCAC--ACACTCACTCA--------------------------CCCAGGTTTCATCCATACAAATGTGTTTG
droSim1 chrX_random:4339044-4339160 + GTATTCGCAATAC-AAGCACAAGGTGATCGATGGGAGCTGA----GCGCCTGA--TGTGATGATGAAGTAGATCGATCACACCAC--ACACTCACTCA--------------------------CCCA-GTTTCATCCATGCAAATGTGTTTG
droSec1 super_17:323461-323577 + GTATTCGCAATAC-AAGCACAAGGTGATCGATGGGAGCTGA----GCGCCTGA--TGTGATGATGAAGTAGATCGATCACACCAC--ACACTCACTCA--------------------------CCCA-GTTTCATCCATGCAAATGTGTTTG
droYak2 chrX:10606276-10606397 + GAATTTAGAATAA-AAACAAAAGGTGATCGATGGGAGCTGACCTTGAGCCTGAGCTGAGATGATGAAGTAGATCGATCACAC-AC--TCACTCACTCA--------------------------CTCA-GTTTCATCCATGCAAATTTGTTTG
droEre2 scaffold_4690:6858711-6858812 + CCC-----AATAA-AACCAAAAGGTGATCGATGGGAGCTGA----G--CCTGA--AGTGATGATGAAGTAAATCGATCACA-------CACTCACT------------------------------CA-GATTCATCCATGCAAATTTGTTTG
droAna3 scaffold_13337:17013621-17013746 + GAAATCTCAGCAGCAAGCTCAG-CGGATCG---GGTGTTGG----A--GGTGG--TCTGCCATTGACGAAGAGCAACAGCACCAA--TTCCTTCC---AGGAGCATAGCGCTCCCAAGC----------GTCGTCCCAGTATGGGTGCCTTGG
dp4 chrXL_group1a:8134511-8134553 - ACT------------------------------------------------------------------------------CCAC--ACACACACACA--------------------------CACA---GACAGACATATAAAGGA-CATG
droPer1 super_5:779941-779973 + ACACTCGCACTCC-C---ACAAGAAGAGCAGCAGTAG--------------------------------------------------------------------------------------------------------------------
droWil1 scaffold_180698:6476640-6476654 + ATTT------------------------------------------------------------------------------------------------------------------------------------------GAATGTGTGTG
droVir3 scaffold_13042:4246856-4246902 - CAC-----------------------------------------------------------------------------AC-ACACACACACACATG--------------------------TACAGCTTTCACTCATGCATATTTGTT--
droMoj3 scaffold_6500:26586811-26586907 + GCATTTGCACTG------------------CTCGAAAATGA----GCAATTGC--AAAGATCATTG-----------CACA---A--TACATTGC---AGAGAAATACTGCACAAAATAATTTAGTTA-ATTT------------TAAGTTGA
droGri2 scaffold_15245:5234538-5234618 - GCAAAATGAACAC-----AAAAACTGTTG------------------------------------------------CATACCAC--ACACTAACTG--T--AAATATCA--------------CATTTTTATTATTCTTATAATTATTAATA

dme-mir-4966-1 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:19452387-19452544 + GTTTCCAGGACATTGAGCTGTGTGACAACAAACTTGTCGGCACTGGAGTACTAAATA--TATTGCACATGTTCATGC----------ATGTTCAACATATTTAGCACTCAAGTACCGAA--------------------------AAATGAACAACGAAACGAAAAATAACACG-AA---CATCATGCTGCCCATTATAT
droSim1 chrX:15018266-15018398 + ACTTTGTCGG------------------------------CACTGGAGTGCTAAATA--TATTGCTCATGTTC--------TCATACATGTACAACGTATTTAGCACACGAGTACTGAA--------------------------AAATTAACAACGAAACGGTTG--AACTCGGAAGTGCAATATTGAGTTTTTGATTT
droSec1 super_8:1734644-1734797 + GTTTCCAGGACATCGAGCTGTGTGACGG------------CACTAGAGTACTAAATA--TATTGCACATGTTCATACATGTTCATACATGTAAAACATATTTAGCACTCAAGTACCGAA--------------------------AAATGAACATCGAAACGGGAG--AACACG-AG---CATCTTGCTACCCATTATAT
droYak2 chrX:11886103-11886223 - GTTTCCGGGACTTCGTACTGTATGACAGA---------------------CTATATATACAA-------------------TACGAAGCCTCTGAAATTTTCTGCGCTCAAGTACCAAAAACTACCAGCA-------------------AACCAACGAAACTGGAG--AACTACGGA---CGGCA---------------
droEre2 scaffold_4690:9688657-9688714 + GTTTCAGGGACTTCGCACTGTATGACAA-------------------------------------------------------------ACTATAAATTTTGTGCACTCAAGTACCAAA---------------------------------------------------------------------------------
droAna3 scaffold_13417:2468043-2468174 - GTTTCCGGGATCTCGTACTGTATGAAGTT---------------------TTCTATATACAA-------------------TTCGAAAACTCAGAAACTTCCTGCCGTGAGCTACCATTGATCAACGGCTGAGTATGCGACCGGAAAGGGGACGCGAATGCGAGGACTAA----------------------------AG
dp4 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

dme-mir-4967 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:5899582-5899719 - CATAGATATGGC--TAACTATAGCGTTGTCTCTTGCGCAAATTGCATTTTC---------TCTCTGTTAACATGTACACATAATTCCTGTAACAAAGGGCATTT-----GCAA--TGTGTGAGTCAGCAAA--CCGCATCCGCTTCCCGGC-CCCTCCT
droSim1 chr2R:4528976-4529111 - CGAGGAAATAGC--TAACTATAGCGTTCTCTCTTGCGCAAATTGCATTTTC---------TCTCTGTAAACATGTACACATAATTCCTGTAACAAAGGGCATTT-----GCAA--TGTGTGAGTCAGCAAA--CCGCATCCGCCCC-C--CGCCCTCCC
droSec1 super_1:3512309-3512447 - CGAGGAAATATCTTTAACTATAGCGTTCTCTCTTGCGCAAATTGCATTTCC---------TCTCTGTAAACATGTACACATAATTCCTGTAACAAAGGGCATTT-----GCAA--TGTGTGAGTCAGCAAA--CCGCATCCGCCCCTC--TGCCCTCCT
droYak2 chr2L:18527608-18527740 - CGGGAAACTCG-----ACTATAGCGTTCTCTCTTGTTTAAATTGTATTTTC---------TCTCTGTTAAAATGTACACATAATTCCTATTTCAAAGGGCTTTG-----GAAA--AGTGTGAGTCAGCAAA--CCGCATCCGCCCG-A--TTTCTTCCT
droEre2 scaffold_4929:8470755-8470887 + CGGTAAATTCG-----ACTAAAGCGTTCTCTCTTGCTTAAATTGTATTTTC---------TCTCTGTTAACATGTATACATATTTCCTGTAACAAAGGCCATTG-----GAAA--TGTGTGAGTCAGCAAA--CCGCATCCGCCCC-C--TTTCTTCCT
droAna3 scaffold_13266:17255662-17255760 + TGCTATA-TATCTGTACCTATA----------------------------------------------TGTATGTACGGGTG-TTTATGTAACAAAAGGCATTTTGGTGGAAA--TGCGTGAGTCAGCGGA--CCGCATTAT-------GC-CCTTTGT
dp4 chr3:6114287-6114365 - C-------------------------------------------------------------TCCATCCATATGTAC--------TTTATAACAAAGGGCATTT-----GGAATATGTGTGAGTCAGCACATGCCGCATCCGTG-----GC-CCCTTCC
droPer1 super_2:6317550-6317666 - TTTTGACA--GC-----TTTAAGCGTTCC----------------ATTTCCATTCACGAACCTCCATCCATATGTAC--------TTTATAACAAAGGGCATTT-----GGAATATGTGTGAGTCAGCACATGCCGCATCCGTG-----GC-CCCTTCC
droWil1 scaffold_180700:5327370-5327375 - CCC---------------------------------------------------------------------------------------------------------------------------------------------------------TTT
droVir3 scaffold_12875:417241-417243 - CCT------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:5073155-5073192 + GAGACACTTA-------------------------------------------------------------------------------------ACTCCGTTC-----ACCT--TGTGCGA----------------------------C-TCCCTAA
droGri2 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------

dme-mir-4968 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:11545623-11545808 - AAACTGCATTCAAGT-----------TTTTCC-T-----------------------CAGAGC-----C-GCGACT----GCTGG---CGTGTTA-TTG------------------TTGC----TGTTGCAGCTAGCTGCCACGGT-------TTGTTGCTTCACTGATTACGCGCAATGCAGCAACAGCAGCA---------------GCAGC------A------------------------------------------------------------------GAAGCAACAGCAACT-AACTGCAGAGGAGCAATAGCAGCT-GAGAGTTCAGTTGCGAAAC-CGGCG
droSim1 chr3L:10929570-10929746 - AAACTGCATTCAAGT-----------TTTTCC-T-----------------------CAGAGC-----C-GCGACT----GCTGG---CGTGTTA-TTG------------------TTGC----TGTTGCAGCTAGCTGCCACGGT-------TTGTTGCTTCACTGATTACGCGCAATGCAGCAGCAGCAG------------------------------------------------------------------------------------------------AAGCAACAGCAACT-AACTGCAGAGGAGCAATAGCAGCT-GAGAGTTCAGTTGCGAAAC-CGGCG
droSec1 super_0:3745423-3745605 - AAACTGCATTCGAGT-----------TTTTCC-T-----------------------CAGAGC-----C-GCGACT----GCTGG---CGTGTTA-TTG------------------TTGC----TGTTGCAGCTAGCTGCCACGGT-------TTGTTGCTTCACTGATTACGCGCAATGCAGCAGCAGCAGCA---------------GCA---------------------------------------------------------------------------GAAGCAACAGCAACT-AACTGCAGAGGAGCAATAGCAGCT-GAGAGTTCAGTTGCGAAAC-CGGCG
droYak2 chr3L:11579958-11580167 - AAACTGCATTCAAGT-----------TTTTCC-T-----------------------CAGAGC-----C-GCGACT----GCTGG---CGTGTTA-TTG------------------TTGC----TGTTGCAGCTAGCTGCCACGGT-------TTGTTGCTTCACTGATTACGCGCAATGCAGCAGCAGCAGAA---------------GCAGC---AGCAGCAGC----------------------------------AGTAGAAA------TAGCAGCA-----GTAGCAACAGCAACT-AACTGCAGAGGAGCAATAGCAGCT-GAGAGTTCAGTTGCGAAAC-CGGCG
droEre2 scaffold_4784:11545792-11545968 - A-ACTGCATTCAAGT-----------TTTTCC-T-----------------------CAGAGC-----C-GCGACT----GCTGG---CGTGTTA-TTG------------------TTGC----TGTTGCAGCTAGCTGCCACGGT-------TTGTTGCTTCACTGATTACGCGCAATGCAGCAGCAGCAG------------------------------------------------------------------------------------------------AAGCAACAGCAACTGAACTGCAGAGGAGCAATAGCAGCT-GAGAGTTCAGTTGCGAAAC-CGGCG
droAna3 scaffold_13337:5830221-5830437 - AAACTGCATTCAAGTTTTGTTTTTGTTATTTTTT-----------------------CTTTGC--TTCT-GCAACTATT-GCTGGTTAGCTGCTAGTTG------------------CTGC----TGCTGCTGCT-GCTGCCACGGT-------TTGTTGCTTCACTGATTACGCGCAATGCAGCAGTAGCAGTA---------------GCAGT---GGCA----------------------------------------------------GAG---GAGACAGAGGAGCCACTGCAAC--AACTGCAACAA---AACAGCAGCT-GAGAGTTCAGTTGCGAAAC-CGGCG
dp4 chrXR_group6:10126891-10127089 + AAACGGCATACAAGT-----------TTTTCC-TCGCCAAACACAAAGCGTTTTAGCCAGAGCTCTTCT-GCAACTATT-GCTGG-------TTG-TAG------------------TTGT----AGTT-------GCTGCCACGGT-------TTGTTGCTTCACTGATTACGCGCAATGCAGCAGCGGTGGCA---------------GCGGT---GGCA----------------------------------------------------GCG---GTGGCAGCGG-----TGGCA------------------GACGGCAGCCCCCGAGTTCAGTTGCAAAAC-CGGCG
droPer1 super_4:4953737-4953917 + TTTC-GTTTTC--GT-----------TTTCATTT--------------------------CGC-----T-GT--AA----ACAAG---C--GATT-TTG------------------TTGC----TCTTTCTGCTCGTAATTGAG-A-------TAAATGCATTTT---AAATGCGCAAC--CGCAGCTGCA------------------GCAGCAGCAGCA----------------------------------------------------GAGGCAGCA-----GTTGCAACAGCAGCT-AGCTTCAACT----GGTTGCAGTT-GCGTATGCAGATGCGATGCAAGGCG
droWil1 scaffold_180698:2057599-2057768 - ACACTGCAGACAAGTTTTAAATGCCTTTTTTT-T-----------------------CGTAGC-------------------TCT---CTTGTTG-TTGTTGTTGCTAA-GT--------C----TTCTGCAACTA-TTGCCACGGT-------TTGTTGCTTCACTGATTACGCGCAATGCAGCAGCAGCAGCG---------------GCAG---------------------------------------------------------------------------------CAGCA------------------AGCGGCAGCT-TCGAGTTCAGTTGCAAAAC-CGGCG
droVir3 scaffold_12855:885802-885977 - AGGATATGGGCGATT-----------GTCTTA-T-----------------------CAGTGG-----TGGTGCCG----GACCA---GCTGTTA-GTG------------------CCGT----TGCTGATGCCAGCGGCAACCTT-------TTGCTCGATCAT-CATCACCATCATC---------ATCAT--CAACAACAGCAGCAGCAGC------A----------------------------------------------------G--------------CAGCAGCAGCAACA-ACAACAACAGCAGCAACAGCAGCA-GCTACTGCAG---------------
droMoj3 scaffold_6496:11355914-11356095 - AAACGAAATGAAACT-----------TTGTGC-G-----------------------CATAG--------GCAACCAACAGC-GG-------CGG-CAG------------------CAGC----AGCAGCAG------------------------------------------------------------------------------CAGC---AGCAGCAGCGCCAGCATCGCTGAGACTTTGACGCGTTGGCAAAAGAAGCAGCAGCAG------CA-----GCAGCAACAGCAAC--AACAGCC--GCAGCAGCAGCAGCA-GCGACGGCAGCAGCAGAAA-CGTCG
droGri2 scaffold_15110:4649694-4649883 + CAAT----------T-----------TTCTCA-T-----------------------CAGTTT-----C-T-------------------TGCCG-ATGATGAAGCAAATGTCATCGCTGCAGAATGTTGCATTTCGC-GCCAAGATGGGTGAGCTGCTGCTGC---------ACACAATGCAACAATCACAAATGCAACAACAGCAGCAACAGC------A----------------------------------------------------GCAGCAGCA-----GCAACAACAACA--------GC--AACAACAACAGGAGCC-G---ATGCAGCAGCA------ACCG

dme-mir-4969 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:17624220-17624408 - TATATATATGTTTTTGTATGGATTTTTCGGCGTGGCGGTAA------------ATTGAATGATGAGTGG-GAGG--ATGTCGCTGCCATTG----------TTTGG---TTGATA--------------------------------------AGGGAGCCTGGCGCACTATTACCTGGCTCTCTGAA-------------------------------------------A-CGAGAGC--------CCACCTGTCA--------ATCAATACCACCCCG-------CCGA--TGCGACATCATCATAATAATCATCGCCTTT
droSim1 chr3R:17429869-17430050 - TGTTTTTG--------TATGGATTTTTCGGCGTGGCGGTAA------------ATTGAATGATGAGTGG-GAGG--ATGTCGCAGCCATTG----------TTTGG---TTGATA--------------------------------------AGGGAGCCTGGCGCACTATTACCTGGCTCTCTGAA-------------------------------------------A-CGAGAGC--------CCACCTGTAA--------ATCAATACCACCCCG-------CCGA--AGCGACATCATCATAATAATCATCGCCTGC
droSec1 super_0:17996591-17996767 - TATATATATGTTTTTATATGGATTTTTCGGCGTGGCGGTAA------------ATTGAATGATGAGTGG-GAGG--ATGTCGCAGCCATTG----------TTTGG---TTGATA--------------------------------------AGGAAGCCTGGCGCACTATTACCTGGCTCTCTGAA-------------------------------------------A-CGAGAGC--------CCACCTGTCA--------ATCAATACCACCCCG-------CCGA--AGCGACA------------TCATCGCCTTT
droYak2 chr3R:18444204-18444378 - G---------------TATGGATTTTTCGGCGTGGCGGTAA------------ATTGAATGATGAGTGG-GAGG--ATGTCGCAGCCATTG----------TTTGG---CTGATA--------------------------------------AGGGAGCCTGGCGCACTATTACCTGGCCCTCTGAA-------------------------------------------A-CGAGAGC--------CCACCTGTCA--------ATCAATACCACCCCG-------CCGA--ACCGACATCATCATAATAATCATCGCCAGC
droEre2 scaffold_4820:10462895-10463063 + TGTAT--------------GAATTTTTCGGCGTGGCGGTAA------------ATTGAATGATGAGTGG-GAGG--ATGTCGCAGCCATTG----------TTTGG---CTGATA--------------------------------------AGGGAGCCTGGCGCACTATTACCTGGCCCTGTGAA-------------------------------------------A-CGAGAGC--------CCACCTGTCA--------ATCAATACCACCCCG-------CCGA--ACCGACATCATCATAGTAATCAT-------
droAna3 scaffold_13417:705028-705198 + TGTATATGTGTGGGTGTAGAGGTGTGT--------AGGTGT------------GCAGGTGTACGGTTGT-GTGT--GTGTGGCATTCGTTGCT-ACTTATGTTTAA-GCTTCGTA--------------------------------------TTTAAGCTTTTTGCACGATTTCCT----CTAACAA-------------------------------------------A-TGGATTT--------TCACTTGTT------------------GCCCAGCCAG---ACG---AACGAAGCCATCACAAAAAT----------
dp4 chr4_group3:1192892-1193069 - TATATGGCCTATCCAGCAGGAATTTATCCAGCGGATGGTAG------------CTAGAGATGC-AGTTG-GAGG--GGG---GCACCATAG----------TTTGG---AGTAGC--------------------------------------CAAA---------------TGCCAGGCGATAAGGC-------------------------------ATGAAAAATACAA-CTAATAA--------ACATAAACCAGTCTTCTTTTAAAA--------G-------CTGC------TCATCATCATCATCATCATGATCATC
droPer1 super_7:2291330-2291534 - CATAAAAGGGTCTGAGTATCTGAGCGT----C------------------------------TGGGTGG-AACC--TCTGTGCTGCTAATG----------TT-AG---CTGATCCCTCTCCTCCCTCCCACTCGGTCCCTGCCCCCGCTCCCTTGGTGGCTGTTGCACTTTCCCCCGGGGCTCTGGA------------GTGTGCACACTTTTGGCA---------TAATA-CAACAAAATTGATTTG----------------------------------------------CAGCATGCATCATTATCAACATCGTCGTT
droWil1 scaffold_181089:335812-335995 + TTTTTTGAAATGTTTGTAAATGTGTGT----G----TGTTT------------GTGTGTGAAGAAGAA-TGTGTGTATGTGCTGACTAG--TTCAATAATG----C---C--------------------------------------------CAGAGAATGTTACAAGTTTAATGGAAGTTTTCAA-------------------------------------------ATAGAAAAG--------CTAAAAGGAA--------TTTAATTTTAGACAT-------CAGTTTCGAAGCATCGGCATCACAATCATCCCCATT
droVir3 scaffold_12963:15197471-15197651 + TATATATATAGATATATATATATATATATGCTGGGT----------------------TATATGA--------------------CTTTTG----------GG-TG---CTGATAAGAGGCG----TTCAGCTCAGTGC---------------CAGAGCCCAGCGGCTAATTGACAGCCCCACGGG-----------------CCATGCGGTTA---------AATTAAAA-CGAAAAA--------TCATTTGCCA--------GCA-GCAACAGC-AG----CAGCAGC--AGCGGCAGCAGC-----------------A
droMoj3 scaffold_6496:7093711-7093898 - TAGCAACTCGTTTCTGTTGCTGTATGT----GTAGCTGTAGCTGTATCTGTAGCTGTATCTGTGGCTG-TATCTGTATCTGGCAGCTGG----CAGCAGTA----G---C--------------------------------------------TGGTAGCTGCTGCTGGCTC--------TGTTGCT------GCCAGAGTATCTGTATCTGTGGCGCGTCAT-----------------------------TGT------------------------T-------GTGC--GTTGCCGTTGCCATCGTAACCAACGCCGTC
droGri2 scaffold_15126:1496468-1496644 - TACATCCACATCGCTGCTTCGGCTTAT----GTTGTGGTAA------------GTCATTAGAT--GCAG-ATGA--TTGGCGTCATCATCG----------CCTGCT--TCCACA--------------------------------------TCATAGTCAAGGGTATTCTTTTCTGCCGTCTC--AATGAGCGCTAGCG--------CCGATGAGATATCAA-----------------------------CGA------------------------G-------GTGC------TCTTCATCATCATCATCATCGTCATC

dme-mir-4970 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:10741869-10742002 + CATGTTTAGATCGGA--CCCAAAGGTGGGCGAC--AAG---GGCTGGGAGCAGC-----AGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCG----------------TGG---GTTGCTCTTGCTCC-------------------TGACCCTCCTCTTCCT------------------------CCGCTTCATCCT----------C-C---TCCGCAT
droSim1 chr2L:10541288-10541421 + CATGTTTAGATCGGA--CCCAAAGGTGGGCGAC--AAG---GGATGGGAGCAGC-----AGTTGCTGGCGGTATTCTGAAGTTTCTTTTTCG----------------TGG---GCAGCTCTCGCTCC-------------------TGACCCTCCTCTTCCT------------------------CCGCTTCGTCTT----------C-C---CCCGCAT
droSec1 super_3:6159513-6159646 + CATGTTTAGATCGGA--CCCAAAGGTGGGCGAC--AAG---GGATGGGAGCAGC-----AGTTGCTGGCGGTATTCTGAAGTTGCTTTTTCG----------------TGG---GCAGCTCTCGCTCC-------------------TGACCCTCCTCTTCCT------------------------CCGCTTCGTCTT----------C-C---CCCGCAT
droYak2 chr2L:7146365-7146495 + CATGTTCAAATCGGA--GCCAAAGGTGGGCGAG--AGG---GGCTGTGAGCAGC-----CGTTGCTGGCGGTGTTCTGTCTCTGCTCCTCCG----------------CCG---GCTGCTGTTGCTCC-------------------TGACCCTCCTCGTCCT------------------------CCGCGTCTTCC-----------------TCGCCGT
droEre2 scaffold_4929:14689286-14689416 - CATGTTCAAATCGGA--CCCAAAGGTAGGTGAG--AGG---GGCTGGGAGCAGC-----CGTTGCTGGCGGTATTCTGCCTCTGCTCCTCCA----------------CCG---GCTGCTGTTGTTCC-------------------TGAACCACCTCGTCCT------------------------CTGGTTCGTCAT----------C-G---C---CTT
droAna3 scaffold_13117:2651271-2651404 - CAGCATTAGGGCGATCCTCCGCCAGTGGTTGATCGAAG---GCATGGGATCCAC-----CCC----AGCGTCTATCTGAAAACGATGTTTAT----------------CCA---CCTGCTCCTGCTCC-------------------TGCTCCTCATCCTCCT------------------------TCCCTTCGTCTT----------C-G---TCATCAT
dp4 chr3:14693225-14693346 - CATGTTCAGATCCGA--TCCAAATGTGGGGGAC--AAG---GGCTGGGAACAGC-----CATTGCTCTGAGTGATGTGCTGCTCC-------TCCCG---CTCTCCCGTTGGCA-------------------------------------------------GTTCCTCATCCTCCTCGTCCGGGTCT-----------------------------AGTT
droPer1 super_4:2921871-2921992 + CATGTTCAGATCCGA--TCCAAATGTGGGGGAC--AAG---GGCTGGGAACAGC-----CATTGCTCTGAGTGATGTGCTGCTCC-------TCCCG---CTCTCCCGTTGGCA-------------------------------------------------GTTCCTCATCCTCCTCGTCCGGGTCT-----------------------------AGTT
droWil1 scaffold_180708:9012130-9012236 - CATGTTTAAATCTGA--ACCAAATGTGGCCGAC--AAT---GGTTGAGAGCAGC-----CATTTGTTA-----------------------------------------------------------------------------------------------GTTGTTCATCCTCTTCA-CAGGCTCC---AGCAGCTTGCTCACCCCC-C---TCAGCGT
droVir3 scaffold_12963:15905405-15905563 - CATGTTTAAATCGGA--GCCATAGGTAGCCGAC--AATGCCGGCTGCGAGCAGC-----CATTGCTTAGGGTTATCTGCGGCTTC-------TGTGGTGCCTGTTCCGTT----------------GCGTTAATCGGCTGGGAGTAGAGCTCACCGGCGGCC------------------------------TCCAGATCGCTGTCGCCT-CCTGTCGCGAT
droMoj3 scaffold_6500:3051871-3052002 + CGTGCGTAGCT---G--CTCGTGGCTGGGTGGC--GTG---GCATTGTAGAGTCTCAGCTGCTG-----------CTGCTGCTGCTGCTCAG----------------ACT---CCTGCTCTTGCTCA-------------------TGCCCCTCCAGCTCCT------------------------CCTCTTCAGCCTCGCTGT----CGC---TCAGCGG
droGri2 scaffold_15252:8305990-8306138 - CATGTTCAAATCGGA--GCCATAGGTGGCCGAC--ATG---GGTTGTGACCACT-----CATTGGCCGATGCTTGCGGTTCCTTC----TCG----------------GGT---TCCGGTTCCGCTTCGGTCGCTGGCTGGGAATAGGGTTCCTCAGCTGCAT------------------------TCGCTTCCTGAT----------C-G---CTGTCCT

dme-mir-4971 CDS Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:3463274-3463415 - GGAAG-GGCCAACTTCT---CGGCCCT--------CGACACGGTGGATGAGCTTGTCAGTGGCGGATC------CAGGAGCAATTCTGCCGC-------TGGCGACAG--ATCATCGGCCA--CTGACAATGC----------------------CCATTCACTGTTCGAGGAGATCATGTCGG--------GCTCGGATG
droSim1 wop21h10.b1:281-423 + GGAAG-GGCCAATTTCT---CGGCTCT--------CGACACGGTTGATGAGCTTGTCAGTGGCGGATC------CAGGAGCAATTCTGCCGC-------TGGCGACAG--ATCATCGGCCA--CTGACAATGC----------------------CCAGTCACTGTTCGAGGAGATTATGTCGG--------GCTCGGATG
droSec1 super_129:25371-25512 - GGAAG-GGCCAACTTCT---CGGCCCT--------CGACACGGTTGATGAGCTTGTCAGTGGCGGATC------CAGGAGCAATTCTGCCGC-------TGGCGACAG--ATCATCGGCCA--CTGACAATGC----------------------CCAGTCACTGTTCGAGGAGATCATGTCGG--------GCTCGGATG
droYak2 chrU:14964015-14964156 + GGAAG-GGCCAACTTCT---CGGGCCT--------CGACACGGTGGATGAGCTTGTCAGTGGCGGATC------CAGGAGCAATTCTGCCGC-------TGGCGACAG--ATCATCGGCCA--CTGACAATGC----------------------CCACTCACTGTTCGAGGAGATCATGTCGG--------GCTCGGATG
droEre2 scaffold_4929:3498112-3498253 - GGAAG-GGCCAACTTCA---CGGGCCT--------CGACACGGTGGATGAGCTTGTCAGTGGTGGATC------CAGGAGCAATTCTGCCGC-------TGGCGACAG--ATCATCGGCCA--CTGACAATGC----------------------CCACTCGCTGTTCGAGGAGATCATGTCGG--------GCTCGGATG
droAna3 scaffold_12943:2497935-2498076 + GGCAG-AGCCAACTTCG---GAGCCCT--------TGAAACGGTCGACGAGCTTGTCAGTGGCGGCTC------CATAAAGAATCCTGCCGC-------TGGCGACAG--ACAGTCGGCCA--CTGACAACGC----------------------GCACTCGCTGTTCGAGGAAATAATGTCTG--------GCTCCGACG
dp4 chr4_group3:936699-936854 - GGAGT-GCTCGTCTACG---TGGTTTTGCCCCACGCAATACCATTGATGAGCTGGTCAGTGGTGGCTCCTCCGCCATTAGCAATTCTGCCGC-------TGGCGACAG--ATTGTCGGCCA--CTGACAATGC----------------------CCATTCACTGTTCGAGGAGATCATGTCGG--------GCTCTGATG
droPer1 super_1:2415168-2415323 - GGAGT-GCTCGTCTACG---TGGTTTTGCCCCACGCAATACCATTGATGAGCTGGTCAGTGGTGGCTCCTCCGCCATTAGCAATTCTGCCGC-------TGGCGACAG--ATTGTCGGCCA--CTGACAATGC----------------------CCATTCACTGTTCGAGGAGATCATGTCGG--------GCTCTGATG
droWil1 scaffold_189765:461-602 - GTAAC-GATAGACGGAG---ATACCTT--------CGAGGTGGTGGACGAGTTCGTCTACCTCGGATC------CTTGTTGATGGCTGACAA-------CAATG----------TTAGTCG--GGAAATACGA----------------------AGGCGCATTATCAGCGGAAGTCGTGCCTACTATTGGCTCCAGAAGA
droVir3 scaffold_12963:15952027-15952160 - ATTAGATGCCGATTGCGGTTCGTCCAT--------CAAGTCTGCGGCTGAGCTTGTCAGCGCCGT---------------CAATGCTGCCGC-------TGGCGACAG----CCTCGGC-G--CTGACAAGGA----------------------GCATGCCATGTTTGAGTATTTCCTCAACG--------AAGATGACG
droMoj3 scaffold_6473:12510219-12510341 + GGTTT-G----------------------------------------TGTGTGTGTGTGTGGTGGAACTTC---AATGCGAACCT------CTTGCCACAATCGAGTGCAATTAACTGCCA--TGATATATGGCCAATCCCA-------------------TATGCAGACGGCGACCGAGTCGAA-------GTTCGGCTG
droGri2 scaffold_14853:4216060-4216150 - ------------------------------------------------------------------------------------TCGACCGC-------TGGCCACAA--ATGGCCGGACAGACAGACA-------GACAGACAGACAGACAGACAGACTCACTGACATAATTGATCATATC----------GCTTATACG

dme-mir-4972 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:3636951-3637088 - CACTTGCATGGCATAAATCAAAAGCGCCGTAGGCCT-CCACCTCG--------------GC---------------------------------------------------------------------------------------TTTACAGATATATATATATATATCGTGTATATATCTGTGCGATCGGG-A-TTGAGACTGAGGTTGGT-----CCGAG-TACTTTTGTGGCCA--TTTACACC
droSim1 chr2L:3596396-3596533 - CACTTGCATGGCATAAATCAAAAGCGCCGTAGGCCT-CCAACTCG--------------GC---------------------------------------------------------------------------------------TTTATATATATGTATATATATCGTGTATATATATCTGAGAGATCGGG-A-TTGAGACTGAGGTTGGT-----CCGAG-TACTTTTGTGGCCA--TTTACACC
droSec1 super_5:1737908-1738045 - CACTTGCATGGCATAAATCAAAAGCGCCGTAGGCCT-CCACCTCG--------------GC---------------------------------------------------------------------------------------TTTATATATATGTATATATATCGTGTATATATATCTGAGAGATCGGG-A-TTGAGACTGAGGTTGGT-----CCGAG-TACTTTTGTGGCCA--TTTACACC
droYak2 chr2L:3630931-3631061 - CACTTGCATGGCATAAATCAAAAGCGCCGTAGGCCT-CCAACTCG--------------AC---------------------------------------------------------------------------------------TATATATGTATATATATA-------TATATATATCTGTGAGATCGGG-A-TTGAGACTGAGGTTGGT-----CTCAG-TACTTTTGTGGCCA--TTTACACC
droEre2 scaffold_4929:3675838-3675960 - CACTTGCATGGCATAAATCAAAAGCGCCGTAGGCCT-CCACCTCA--------------GC---------------------------------------------------------------------------------------TATATATATATGT---------------GTGTATCTGTGGGATCGGG-A-TTGAGACTGAGGTTGGT-----CTTAG-TACTTTTGTGGCCA--TTTGCACC
droAna3 scaffold_12916:5691742-5691836 - CACTTGCAAGGCATAAATCAAAAGCGCCGTAGGCCT-CCGCCACT------------------------------------------------------------------------------------------------------------------------------------------------ATGAGT-C-TGGAGTCTGGTGATGGT-----GGAGT-GCCTTTTGTGGCCA--TTGGCACC
dp4 chr4_group3:5095808-5095886 + CACTTGCGTGGCATAAATCACAAGCGCCGCAGGCCT-GAGACTT-TGGAGTTTTTTGTGGCACAG-------------------------------------------------------------------------------------TGTGTGT--GTG----------------------------------------------------------------------------------TGTGTG
droPer1 super_1:6587322-6587402 + CACTTGCGTGGCATAAATCACAAGCGCCGCAGGCCT-GAGACTT-TGGAGTTTTTTGTGGCACAG-------------------------------------------------------------------------------------TGTGTGTATGTG----------------------------------------------------------------------------------TGTGTG
droWil1 scaffold_180708:9512363-9512488 + CACTTGCATGGCATAAATCAAAAGCGCCGTAGGCCTTCCACCTCT---------ATAT-------AGTATAATGTGTTCCACATACTCGAC---------------------------------------------------------------------------------------------------TTGGG-AGTTGAATTCGAAGTTG-T-----CCATG-T-CTTTTGTGGCCAATTTTACACC
droVir3 scaffold_12963:15108661-15108745 + CACTCGCGTGGCATAAATCAAATGCGTTGCAGGCCG-CCGGCGCT-------CCACGTT-----------------------GCACTCGACTC--------------------------------------------------------------CT-------------------------------------------------------------------C-TA--CTTGCGGCTA--GCAGCTCC
droMoj3 scaffold_6500:18077427-18077576 + CACTTGTGTGGCATAAATCAAATGCGCAGCAGGCCG-CCAGCTGA--------------------CGCTGACCGTGTT----GCACTCGAGTCGAG------------------------TTGAGTGGA---GTCAACTCGCCGCAGCTTTTCATTCGCATATACCCA-----------------------------------------GCCAAGCCAAG-----TGGTCTTTGGGGCCA--TTTACACG
droGri2 scaffold_15126:4287105-4287265 - CACTTGCATGGCATAAATCAAATGCGCCGCGGGCCT-TTGCTACG-----------------------------TGCCACATGCACTCGACTCTCGCCTCTCAACACGACTGACCGAACATTGGCTGGACAAGCCAAGCTGCAG------------------------------------------CAGATCGGGGCATTCCACTCCAAG---------------TGGTCTTTGAGGCCA--TTTGCACG

dme-mir-4973 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:20562282-20562463 + GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGTT--------TGGACTGCTCC--------------------------------------------------------------------------------TCCTCCAACTACTACTGCGGCC-----------------------------------GCTGCTGCTGCTGCTG---CGG-----------------------CTGCTGCATCCGC---CTGCAACCT--------------------------GCAACACTCACACCACGGCAA----------------------------------------------------CAGAAGTAGACGCGTCGC
droSim1 chr2L:20133895-20134076 + GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGTT--------TGGACTGCTCC--------------------------------------------------------------------------------TCCTCCAGCTACTACTGCGGCC-----------------------------------GCTGCTGCTGCTGCTG---CGG-----------------------CTGCTGCATGCGC---CTGCAACCT--------------------------GCAACACTCACACCACGGCAA----------------------------------------------------CAGAAGTAGACGCGTCGC
droSec1 super_18:446156-446334 + GGTCCTTGGGCCA-TCGCTGGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGTT--------TGGACTGCTCC--------------------------------------------------------------------------------TCCTCCAGCTACTACTGCGGCC-----------------------------------GCTGCCGCTGCTGCTG---CG--------------------------GCTGCATCCGC---CTGCAACCT--------------------------GCAACACTCACACCACGGCAA----------------------------------------------------CAGAAGTAGACGCGTCGC
droYak2 chr2R:6918558-6918738 + GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGTT--------TGGACTGCTCC--------------------------------------------------------------------------------TGCTCCAACTACTACTGCGGCC-----------------------------------GCTGCT---GCTGCTG---CGG-----------------------CTGCTGCATCTGC-ATCTGCAACCT--------------------------GCAACACTCACACCACGGCAA----------------------------------------------------CAGAAATAGACGCGTCGC
droEre2 scaffold_4845:3882318-3882503 - GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGTTTGGACGTTTGGACTGCGCC--------------------------------------------------------------------------------TCCTCCAACTACTACTGCGGCC-----------------------------------GCCGCTGCTGCTGCTG---CGG-----------------------CTGCTGCATCT-------GCAACCT--------------------------GCAACACTCACACCACGGCAA----------------------------------------------------CAGAAGTAGACGCGTCGC
droAna3 scaffold_13117:435722-435893 + GGCC-TTGGTC---TCCATCTT-GGGGTAGCCGTAGGGAGC----GATGGCCTTGT-TGGTGAG-TTCCA----------GGGGCTTCTCT--------------------------------------------------------------------------------GGGGCCATTTGCTGCAGCTGCT-----------------------------------GCTGCTGCTGCTGCTGGTGTTG-----------------------CTGCTGCTTCT-C---C-TCGGCGT-------------------------CGCGTCGCTCGCGCAGCTGCT------------------------------------------------------CGTAGTAGGGACGATGC
dp4 chr4_group3:7758140-7758314 - GGTCCTTTCGCCAGGCGCTCGTTTCAGTCGTCGTTGCGTGTTGTAGGTGGActggtctgctctg-ctccgct------------ctgc---------------------------tctgc---cc-------------------------------------------------------------------------------------------------------agcactgctGTTGCTC---C---------------------------ACTGCATCTCTCTC-------CTacacacacacacacgcacgcacacacacg-caagca---cacaACAG----------------------------------------------------CAAAAAT-CTCGCGACGC
droPer1 super_1:9204247-9204421 - GGTCCTTTCGCCAGGCGCTCGTTTCAGTCGTCGTTGCGTGTCGTAGGTGGACTGGTGCGGTCTG-ATCCGCT------------TTGC---------------------------TCTGC---CC-------------------------------------------------------------------------------------------------------AGCACTGCTGTTGATC---C---------------------------ACTGCATCTCTCTC-------CTacacacacacacacgcacgcacacacacg-caagca---cacaACAG----------------------------------------------------CAAAAAT-CTCGCGACGC
droWil1 scaffold_180708:1965385-1965667 + GGTCCTTTCGCAA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGtggcctggtctggtctggcttggac--------tggactggtctgAAGTTTTTGGCAAGTTTTTTTGCTCTGC---C--------------------ACTGCCACAACCAG----TG-------TTCTTCAACTAAtgctgcttct-----------------------------------actgctaaagctgctg---ctg-----------------------ctgctgcATCT-TCAC-------CTGCACACATAGCCACGT-CG-----ACTCGTCGGGGT---CACCAAGGA-AAAAATCAACGAAAAATAAT------AA---TAACTGCTAAAAATGAAAGAAAAAAGAGTCTCGTCGC
droVir3 scaffold_12963:13534067-13534330 - GGTCCTTTCGCAA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGTCTGGTCTGCTCTG-TGCT------------GGTCTGC---------------------------GCTGCTGCCC----AGATTTTTGCTGCC-ACTGGCACACACTGATTGGGATGCCTc------tgccgctgctgccgttgctgtcgagccgacgttgctgctgattttgctgttgctgttgctgttgctg---ttg-----------------------ctgctACATCT-TCC---------------------------------------------------------GCAATG----ACGACGACCAACCC---AAA---CTTCTGTTTCAATTG----CCGTACGCGACGCGACGC
droMoj3 scaffold_6500:24644505-24644771 + GGTCCTTTCGCAA-TCGCTCGT-TCAGTCGTCgttgcgtgttgtaggtggtctggtctgctctg-gtct------------ggcctgc---------------------------gctgctgttcagcctactttttgatgcc-actgccacacactgatggtgatgcctt------cgctgctgctgctgctgctgct-----tctgttgctgct---gccgtcgttgctgtcgtcgctgcta---ttg-----------------------ctgcCACATCT-TCT---------------------------------------------------------ACAACGACCGACGACGACCAACCC---AAACTGCTTCTGTTTCAATTG----CCGTACGCGACGCGACGC
droGri2 scaffold_15126:6330398-6330651 + GGTCCTTTCGCAA-TCGTTCGT-TCAGTCGTCGTTGCGTGTTGTAGGtggtctggtctgctctg-gtct------------ggtctAC---------------------------GCAGCTGCTCC-CCAAACTTTTGCTGTCTGCTGA-----ACTGAATGTAATGGCTc------tgctgatgctgatgcc-----------------------------------gccgatgccgctgatg---ccgctgctgcCCATCGCTGCCCAATGCAGCCACATCT-TCG---------------------------------------------------------ACAATG----ACGACGACTAACCCACCAAA---CTTCTGTTTCAATTG----CTATACGCGACGCGACGC

dme-mir-4974 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:21263917-21264049 + GCATTGACTTCTTTTGTTCTT---TGTTTTTATTCCCTGTCAG--AGAGTATATT--GATTTTAGGTGG-----------------------AC-------ATTTGCGACCATATAAAATAT-ATATATTCCTGATAAAGAATATTTA--------ATATATCTTCTTTTTCGGTATAC
droSim1 chr2L:20861453-20861585 + GCACTGACTTCTTTTGTTCTT---TGTTTTTATTCCCTAGCAG--AGAGTATATT--GATTTTAGGCGG-----------------------TC-------ATTTGCGACCATATAAAGTAT-ACATATTCCTGATCAGAACTATTTA--------ATATATCTTTTTTTTCGGTACAC
droSec1 super_18:1195266-1195398 + GCACTGACTTCTTTTGTTCTT---TGTTTTTATTCCCTAGCAG--AGAGTATATT--GATTTTAGGCGG-----------------------TC-------ATTTGCGACCATATAAAGTAT-ACATATTCCTGATCAGAACTATTTA--------ATATATCTTTTTTTTCGGTATAC
droYak2 chrU:19793626-19793766 + GAACTTAATTATATCGTTCTC---T-CTCTTACACCCTTAAAG--AGGGTGTATT--GATTTTAACCGGAAAAAC-----GCAAAAAAGGAGAC-------ATTTGCGGCCATATAAAGTAA-ATATATTCTTAATCAGTATCAA-----------------CGTCAGTTTTAAGATCC
droEre2 scaffold_4784:24793627-24793751 + TAATTGAATTTCTTTGGTTTT---T-TTACCATTTACTTTTAG--AGAATATACTAGAATTTC--TGAGAAGTGTGTAACAGGCAGAAGGAAAC-------GTTTTCGACCATATAAATTAT-ATATATTCTTGATCAGGA--------------------------------------
droAna3 scaffold_13499:388035-388162 - TTATT----TCCTTTGTTCTT---CGTTTTTATACCCTTGCAG--AGGGTATTAT--AATTTTGGTCAAAAGTGTGCAACGCAGAGAAGGAGAC-------ATCTCCGACCCTATAAAGTAT-ATATATTCTTGATCAGGATCACCT--------------------------------
dp4 chr2:13223937-13224089 - CCGTTCGCCTTTTTGGTTCTTTATTGTTTTTATACCCTTCTAG--AGAGTATTAC--GATTTTGGGCTAATGTCTGCAAGACTGGAAC--------CTGCAACATAGAATCCCATAGGGTATTATATAT-----ATGAGGATCGGTAG--------CCATCTCT-CTTTTTCTATACAC
droPer1 super_0:7229185-7229317 + CCGTTCGCCTTTTTGGTTCTTTATTGTTTTTATACCCTTCTAG--AGAGTATTAT--GATTTTGGGCTGCTGTCTGCAAGGCTGAAAT--------CTATTGCATAGAATCCTATAGGGTATTATATAT-----GTCAGGA-----------------------------TCGGTAGCC
droWil1 scaffold_181150:776667-776791 - T--------TTTTTTGATTTT---CTTTTTTATAACCTTGCAAAAAGGGTATATT--CATTTTGGTCAAAGGAAT-----------------GC-------ATCTCCGACCATGTAAATTAT-ATATATTCTTGATTAGCACGACGAGACGAGTTCATATAG----------------C
droVir3 scaffold_12963:16876342-16876466 - GAACTCGTTTCTGGTGTACGT-CGTGTTTTTATACCCTTGTAG--AGAGTATTTT--AATTTTGTCGTGGAATGTGCAACGCATGGATGGAGAC-------ATTTGGGACCCCATAAAGTAT-ATGTATTCTAGATAA-----------------------------------------
droMoj3 Unknown GGTTTCAGTTCTTTTGTTTTT---TTTTG--ATATCCCAAA-------------------------------TGTGAAGTGCTAAAGAGTTGAAATTCGGAATGTAGATTGGCAT-----------------TGAGTTCAATAAGATA--------TGGCGGATATATTGTATAC---A
droGri2 scaffold_3049:4191-4318 - ATTGACAAAT---TTATTTTT---AATTCTTCTTTTGTTCGAG--TGGGTATAAC--AGGTAGAAGGAA-----------------------GC-------ATCTCCGACGCCATAAAGTAT-ATATGTTTCTGAGAAGGATCAATTG--------AGGAGTCGATGTAGTTCGT---C

dme-mir-4975 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:2594652-2594793 - TAGAACTGGAAATCTGGGCAAATAA--AGCACGTTGCTCCCTGTTTACTTGGGTTTTCTG----------------------------TTCATTTCGCCTATCGAACGTTGAACTTAAAAAGCCACGATCAGTTGTTTAACATACAGATATCTCTGTACACAAGAAGATTCA
droSim1 chr2R:1414726-1414867 - TAGAACTGAAAGTCTCGGCAAATAG--AGCACGTTGCTCCCTGTTTACTCAGGTTCCCTG----------------------------TTCATTTCGCCTATCGAACGTTGAACTTCAAGAGCCACGATCAGTTGGTAAAGATACAGATATCTCTGTATACTAGAAGATACA
droSec1 super_1:259050-259190 - TAGAACTGGAAGTCTCGGCAAATAA--AGCACGTTGCTCCCTGTTTACTCAGGTTCCCTG----------------------------TTCAGTTCGCCTATCGAACGTTGAACTTCAAGAGCCACGATCAGTTGGT-AGGATACAGATATCTCTGTATACTAGAAGATACA
droYak2 chr2L:15337545-15337682 - TAGAAATGAAAATCTCGGCAAGTAA--AGCACGTTGCTCCATGTTTACTCAGGTTTGCTG----------------------------TTTATATCGCCTATCAAACGTTGAACTTGA---ATCACGATCAGTTGGTCAACATACATATATTTGT-CACACTAGGTGATCCA
droEre2 scaffold_4929:19950710-19950840 + TAGGACTGCAGATCCCGGCAACTAA--AGCACGTTGCTCCCAGTTTACTCAGGTTCGCTG----------------------------TTTATATCGCCTATCGAGCGTTGAACTTGAGGAGCCACGATCAGTTGGTCAGCATACATATA-----------AAGATGATCCA
droAna3 scaffold_13266:18414789-18414883 + AAGTCTA----ATTTCGGT------------------GCCTTGTTTACTTCGCTCTCCGGCGGAGAGCTGCAGTGCACGAGGTGTCTAATCGGCCAGCCCATAGAGCAATGAACTT--------------------------------------------------------
dp4 chr3:859167-859237 - TAGCACAGAAAATCTCGGCAATCAAAAAACACGCCGTT-TCTGTTTACGTTACTTCTCGT----------------------------CCCGTCCCGTCT------------------------------------------------------------------------
droPer1 super_2:1035040-1035110 - TAGCACAGAAAATCTCGGCAATCAAAAAACACGCCGTT-TCTGTTTACGTTACTTCTCGT----------------------------CCCGTCCCGTCT------------------------------------------------------------------------
droWil1 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------

dme-mir-4976 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:2723022-2723155 - ACATCATCGATTATTGTCGATGCCGGCGTT---TCCCG---CTC------------------------------------------------------------------------------CAGGCTGTCGTCCATGGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAAGGCGTCGTCTCGCTC---CGCG---TCTGGTCCACG
droSim1 chr2R:1535693-1535826 - ACATCATCGATTATTGTCGATGCCGGCGTT---TCCCG---CTC------------------------------------------------------------------------------CAGGCTGTCGTCCATGGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAAGGCGTCGTCTCGCTC---CGCG---TCTGGTCCACG
droSec1 super_1:401443-401575 - ACATCATCGATTATTGTCGATGCCGGCGTT---TCCCG---CTC------------------------------------------------------------------------------CAGGCTGTCGTCCATGGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAA-GCGTCGTCTCGCTT---CGCG---TCTGGTCCACG
droYak2 chr2L:15457678-15457811 - ACATCATCGATTATTGTCGATGCCGGCGTT---TCCCG---CTC------------------------------------------------------------------------------CAGGCTGTCGTCCATTGAGTTTGTGTTGTCTGCATTCAGCTCGGTGGATGTCAGCCATCGGTGGAAGGCGTCGTCGCGCTC---CGCG---TCTGGTCCACG
droEre2 scaffold_4929:19824507-19824640 + ACATCATCGATTATGGTCGATGGCGGCGTC---TCCCG---CTC------------------------------------------------------------------------------CAGGCTGTCGTCCACGGAGTTCGTGTTGTCGGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAAGGCGTCGTCGCGCTC---CGCG---TCCGGTCCACG
droAna3 scaffold_13266:9050244-9050380 - ACATCATCGATTATTGTCGATGTTGGCGTT---TCCTG---CTC------------------------------------------------------------------------------CAAGTTATCGTCAAGCGGGTTTGTGTTGTCGCCATTTAGCTCCGTAGATGTCAGCCACCGGTGGAAGGCGTCATCCAGCTC---CTCGGGGTCATGTCCACT
dp4 chr3:994566-994696 - ACATCATCGATTATTGTCGATGCTGCTGTT---TCCTG---CTC------------------------------------------------------------------------------CGAGGCATCGTCCGGCGTGTTTGTGCTGTCAGCATTCAGCTCCGTCGATGTCAGCCACCGATGGAACGCATCATCCAGGTC---CTTG---CC---ACCGCT
droPer1 super_2:1175582-1175712 - ACATCATCGATTATTGTCGATGCTGCTGTT---TCCTG---CTC------------------------------------------------------------------------------CGAGGCATCGTCCGGCGTGTTTGTGCTGTCAGCATTCAGCTCCGTCGATGTCAGCCACCGATGGAACGCATCATCCAGGTC---CTTG---CC---ACCGCT
droWil1 scaffold_180745:52392-52526 + ACATCATCGATTATCGTTGATGCTGATGTTTTTTCCTG---CTC------------------------------------------------------------------------------CAAGCTAACGTCCAGTGTATTGGTATTTTCAACATTCAGCTCTGTGGATGTTAGCCAACGATGAAATGCATCATCATCTTGTTCCA-----TC---ATCTTC
droVir3 scaffold_12875:15675057-15675224 - ACATCATCGATTATTGTTGATGCTGGCGTT---TCCTG---TTCGACAGCAACTGCTGCTGCTGCTGC---------------------------------------TGCCGCAGCTGCTGCCAAGCTATCGTCGAGCGTGTTTGTGCTGTCAACATTCAGTTCCGTCGATGTCAGCCAGCGATGAAATGCATCGTCAGCTTC---CTCA--------ATTTCC
droMoj3 scaffold_6496:8124753-8124946 + ACATCATCGATTATTGTTGATGCTGGTGTT---TCCTGCTGCTGAACGGCAAgTGtTGgTGgTGgTggGtgGGgTggGGgTGtTGgTGgTGgTGgTTgTGgTTgTGgTTgTGgTGgTGgTGTCAAGCTATCGTCGAGCGTGTTTGTGCTGTCAACATTGAGTTCCGTCGATGTCAGCCAGCGATGAAATGCATCGTC---------------------------
droGri2 scaffold_15245:12478490-12478641 - ACATCATCGATTATTGTTGATGCTGATGTT---TCCTG---CTCAATTGTAGCTTCTGCTGCAGCTGC---------------------------------------AGCTGCTGCTGCTGCCAAGTTATCGTCAAACATATTTGTACTGTCAATATTGAGTTCCGTCGATGTCAGCCAGCGATGAAATGCATCATC---------------------------

dme-mir-4977 five_prime_UTR Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:3294222-3294357 - TTTTCGTTTAC-----TTTTTAACCCTCCGCT--CGAGAACGTGGTTTCT---TTTGCGACGTGCAATACTCT------------------------------------------------------------------------GTGGCAGAAGTCT-TGC-ACCGTTCCAAAAGAG-AGCAGCACGTGGAGCGACGAGAACGGCCG-TACAATACCCAAG
droSim1 chrU:460991-461115 - TTTT----------------TAACCCTCCGCT--CGAGAACGTGGTTTCT---TTTGCGACGTGCAATACTCT------------------------------------------------------------------------GTGGCAGAAGTCT-TGC-ACCGTTCCAAAAGAG-AGCAACACGTGGAGCGACGAGCACGGCCG-TACAATACCCAAG
droSec1 super_1:944262-944397 - TTTTCGTTTAC-----TTTTTAACCCTCCGCT--CGAGAACGTGGTTTCT---TTTGCGACGTGCAATACTCT------------------------------------------------------------------------GTGGCAGAAGTCT-TGC-ACCGTTCCAAAAGAG-AGCAGCACGTGGAGCGACGAGCACGGCCG-TACAATACCCAAG
droYak2 chr2L:15977521-15977656 - TTTTCGTTTAC-----TTGTTAACCCTCCGCT--CGAGAACGTGGTTTCT---TTTGCGACGTGCAATACTCT------------------------------------------------------------------------GTGGCAGAAGTCT-TGC-ATCGTTCCAAAAGAG-AGCAGCACGTGGAGCGACGAGCACGGCCG-TAAAATACCCAAG
droEre2 scaffold_4929:19300554-19300689 + TTTTCGTTTAC-----TTTTTAACCCTCCGCT--CGAGAACGTGGTTTCT---TTTGCGACGTGCAATACTTT------------------------------------------------------------------------GTGGCAGAAGTCT-TGC-ACCGTTCCAAAAGAG-AACAGCACGTGGAGCGACGAGCACGGCCG-TACAATACCCAAG
droAna3 scaffold_13266:3498798-3498932 - ACCC-CTTTAT-----TTTTATTTTCACCGTT--CGAGAGGGTGTTCTCTTTGTTTTCGGCGTGCAAAACCCT------------------------------------------------------------------------TTG--AGAAGTTT-TGC-ATCGTTCGAAATTAGGGGCAGCACCTCGAACA--GTACACGGCCG-TAAAATTCCTAAA
dp4 chr3:1570003-1570137 - TTTTTGGTT---------TTGT----------TTTGAGAACGTGCCTTCTTT-TTTTTGGCGTGCAACACTT---------------------------------TTTTC---------------------------GCGTCTCTGTGG-AAAAGTTT-TGC-ATCGTTTCAAAAAAAAAGATACACGTCGA----CACATACGGCCGCTAAGATTCCAAAA
droPer1 super_2:1744183-1744317 - TTTTTGGTT---------TTGT----------TTTGAGAACGTGCCTTCTTT-TTTTTGGCGTGCAACACTT---------------------------------TTTTC---------------------------GCGTCTCTGTGG-AAAAGTTT-TGC-ATCGTTTCAAAAAAAAAGATACACGTCGA----CACATACGGCCGCTAAGATTCCAAAA
droWil1 Unknown TTTTTTTTTTT-----TGTTTTACCTTTTTGT--TGAGGAAA---------------------------CATTTCAAAAAATTCTCCGTTTAAGTGCAAGAAACG-------------------------------------------------TGCTCTGCCTACG--CCAAA-----A----------------GTAATACGGCCGTAAACATTCCAAAA
droVir3 scaffold_12875:10810504-10810650 - TTTTGATTTACTTTAATTTCGTTTGCATCGAT--T-AAAACGTGT-TTG----TTTG---CGTGCAATCACT--------------------------------TTTTCCACCGTGTC----------------CCGGC--GTGTGCGA-GAAAGTCT-TGC-AACGTACAA-------AACAACACGTTGA----TAAGCACGGCCGCAAAAATTCCCAAA
droMoj3 scaffold_6496:16132312-16132448 + TTTT--------------------GCATCGAT--T-AAAACGTGT-TTG----TTTGCG-TTTGCAACAACT--------------------------------TTTTCCACCGTGTCCCCCA-----------CCGGCGTGTGTGCGA-AAAAGTCTTTGC-AACGTTCCAAA-------CAACACGTCGA----TAAGTACGGCCGCAAAAATTCCTAAA
droGri2 scaffold_15245:3916304-3916452 - TTTTCGTTTG---------------CATCGATTGT-GAAACGTGT-TTG----TTTGTAGCGTGCAACACACT-------------------------------TTTT-CAC----T--CCCACCCAGCGTGTGT--GTGTGTGTGTGA-AAAAGTCTGTGC-AACGTTCAGA------AACAACACGTCGAA----CTCTACGGCCGCAAAAATTCCCAAA

dme-mir-4978 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:9893349-9893526 - CGGAAAAG-------------CCAA-GGCGGAC---------------------------------------TTTCCAC------------------------------------TTTT----------CGTTTGG------------C-----TGGCCTGGAAAAGCTCTCTT---------TCTCTAT-TG------------CCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCG---AGCCAAAAAC----CATCGAAAAGCCTGGCAAG----------------------------------------CACACAGCTCGCACAAATTTTC
droSim1 chr2R:8329883-8330063 - CGGAAAAT-------------CCAA-GGCGCAC---------------------------------------TTTCCAC------------------------------------CTTTCCA-------CGTCTGG------------C-----TGGCCTGGAAAAGCTCTCTT---------TCTCTAT-TG------------CCTCTATGGCTCGGCCGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCG---AGCCAAAAAC----CATCGAAAAGCCTGGCAAG----------------------------------------CGCACAGCTCGCACAAATTTTC
droSec1 super_1:7418494-7418674 - CGGAAAAG-------------CCAA-GGCGCAC---------------------------------------TTTCCAC------------------------------------CTTTCCA-------CGTCTGG------------C-----TGGCCTGGAAAAGCTATCTT---------TCTCTAT-TA------------CCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTCCG---AGCCAAAAAC----CATCGAAATGCCTGGCAAG----------------------------------------CACACAGCTCGCACAAATTTTC
droYak2 chr2R:7060227-7060403 + CGGAAAAG-------------CCAA-GGTGGAC---------------------------------------TTTCCAC------------------------------------TTTT----------CGTTTGT------------C-----TGGCCTGGAAAAGCTCTCTT---------TCTCTATT--------------CCTCTATGGCTCGCCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCG---AGCCAAAAAC----CATCGAATAGCCCGGCAAG----------------------------------------CACACAGCTCGCACAAATTTTC
droEre2 scaffold_4845:15928216-15928392 + CTGAAAAG-------------CCAA-GGCGGAC---------------------------------------TTTCCAC------------------------------------TTTT----------CGTCTGG------------C-----TGGCCTGGAAAAGCTCTCTT---------TCTCTATG--------------CCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCG---AGCCAAAAAC----CATCGAATAGCCGTGCAAG----------------------------------------CACACAGCTCGCACAAATTTTC
droAna3 scaffold_13266:6006643-6006792 + -------------------------------AC---------------------------------------TTTCCAC------------------------------------TC---------------------------------------GCTGGAAAAAGCTTTCAT------------CCATTCCGGTTGCAACTTGCCACT------C---GACTCTGGGCTCCTAATCCAAATTGCGAGAAAGATCCGCTTTTCG---AGCCAAAAACCGAGCCACCGAAA-CTGGTCAAG----------------------------------------T----AGTACGCACAAATTCAA
dp4 chr3:11241780-11242024 + CGAATGAG-------------AGAAAGGTGGAGATACAAAGAGAGAAACAATGTTGCCTGCCTTTTCCCCAGTTTC--------------------------------------------CCCAGTGTTTGTGTGT------------GTGGGGCGAACTGGAAAACCTCTGTT---------TT-CCATCCC------------CCTTTTTGG------CGCGCTGAGCGCCTATTCCAAATTGCGAGAAAGATCCGCTTTTCG---AGCCAAAAAG----CCACCAAAAGCC---CAAGGAGTTGTCGCA-CTCCGGACTACGCATAAAATCCCCCAAAAGCAGAACTCGC----------
droPer1 super_4:6644552-6644788 + CGAATGAG-------------AGAAAGGTGGAGATACAAAGAGAGAAACAATGTTGCCTGCCTTTTCCCCAGTTTC--------------------------------------------CCCAGTGTTTGTGTGTGTGTGTGTGTGTGTGTGACGGACTGGAAAACCTCTGTT---------TT-CCATCCC------------CCTTTTTGG------CGCGCTGAGCGCCTATTCCAAATTGCGAGAAAGATCCGCTTTTCG---AGCCAAAAAG----CCACCAAAAGCC---CAAGGAGTTGTCGCA-CTC-------------------------CGG--ACTACGCATAAAAT---
droWil1 scaffold_180745:1743803-1743968 + CGGAAAAG-------------CCAA-AGCATAT---------------------------------------AC----------------------------------------------------------TAGA------------T-----TGTACTGGAAAAGCTCTGCAACCAAAAAATT-GCGTCGG------------TCATCTCTG------AGGTCTGTGCGCCTAATCCAAATTGCGAGAAAGATCCGCTTTTTGGAGAGCC----------CACCACGTTGA-----AAG---------GA-GTA-------------------------CGTACAATGAAAAAAATTGGCC
droVir3 scaffold_12875:2042187-2042370 + CAGGAAAAGCATGCGGAAAAGTGCG-TGTATGGAAAAGCAGCAAT---------------------------CGC--AAACGCCTGGAAAAGCGACCGACTG----------------------------------------------------------------CCGCCGTT---------TG-CCA------CAGCA---C-GCTTTTTCG------ATATCTGTGCGCCTAATCCAAATTGCGAGAAAGATCCGCTTTTAG---AGCTAG----------TTCAAGGCA----CACGCAGTTCGC--AGC---------------------------TC-------------CACTGTG
droMoj3 scaffold_6496:23220919-23221095 - TGGAAAAG-------------CGCG-TGTGGAGACAAGCAGCGAC---------------------------CGTACGCCCGCCTGGAAAGCCGACTGCCCGCCAGCATTTGTAGCTC---------------------------------------------------------------------------TGTAGCA-----GCTTGTTGG------ATAGCTGAGCGCCTAATCCAAATTGCGAGAAAGATCCGCTTTTAG---AGCTAG----------TTCAAGGCACACGCAGC----------------------------------------TCCACAGCGGGCACAA------
droGri2 scaffold_15112:4157535-4157620 + CGGAAAAG-------------C-----GCAAAA---------------------------------------TTTGCGA------------------------------------CACT----------CGCTCAA------------C-----TGGC----------------------------------------------------------------AGCTGGGCGCCTAATCCAAACTGCGAGAAAGATCCGCTTTTAG---AGCTA------------------------------------------------------------------------------------------

dme-mir-4979 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:19621540-19621679 - GG-AT----GGGAA--A-------TTATACATAGGTG------TTATATCT-AGGCCAAATATATATACTTG--TTCTATGTA---TTAGTTATTTGCAAAGGAATACATGTG-CCTGTATATATATTCGGTAAAATCACATCTTTGAAT--TG-CCACAGCTCGCTAGT
droSim1 chr2R:18187644-18187778 - GG-AT----GGGAA--A-------CT----ATAGGTA------TTATATCT-AGGCCAAATATATATACTTG--T-CTATGTA---TTAGTTATTTGCAAAGGAATACATGTG-CGTGTATATATATTCGGTAAAATCACATCTTTGAAT--TG-CCACAGCTCGCTAGT
droSec1 super_9:2901906-2902041 - GG-AT----GGGAA--A-------CT----ATAGGTA------TTATATCT-AGGCCAAATATATATACTTG--TTCTATGTA---TTAGTTATTTGCAAAGGAATACATGTG-CGTGTATATATATTCGGTAAAATCACATCTTTGAAT--TG-CCACAGCTCGCTAGT
droYak2 chr2R:19599592-19599718 - TA-AG----GGGAA--A--------------------------TTATACCT-AGGCCAAATATATATACTTG--TTCTGTGTA---TCAATTATTTGCAAAGGAATACATGTG-CCTGTATATATATTCGGTAAAATCACATCTTTGAAT--TG-CCACAGCTCGCTAGT
droEre2 scaffold_4845:20984379-20984510 - CT-GTAGAAGGAAA--A------------------------G-TTACACCT-AGGCCAAATATATATACTTG--TTCTATGTA---TTAATTATTTGCAAAGGAATACATGTG-CCTGTATATATATTCGGTAAAATCACATCTTTGAAT--TG-CCACAGCTCGCTAGT
droAna3 scaffold_13266:8260384-8260523 - GG-TT----CAATG--A-------TTAT---TAGA------GCTAACAACTAATGCCAAATATATATACTCA--ATCGATGTA--CTTGGTTATTTGCAAAGGAATACACTGCGTATGTATATATATTCGGTAAAATCACATCTTTGAAT--TG-CCAAAGCTTGTTAGT
dp4 chr3:9376521-9376668 + AC-------GAGAA--A-------TGCCATATAGGCAATAAACTATTAGCT-ATCGCAAATATATATACTCA--TTTCATGTA--CTTGTTTATGTGCAAAGGAATACATTTTTGTTCTATATATATTTGCTTTAATCACATCTTTGAATCTTT-CCATAGCTCGTTAGA
droPer1 super_4:4699742-4699885 + GAGAT----GCCA----------------TATAGGCAATAAGCTATTAGCT-ATCGCAAATATATATACTCA--TTTCATGTA--CTTGTTTATGTGCAAAGGAATACATTTTTGTTCTATATATATTTGCTTTGATCACATCTTTGAATCTCT-CCATAGCTCGTTAGA
droWil1 scaffold_181141:2403442-2403586 + GT-GT----AGGTATAAGTGTTGCCT----TTTTGTG------TTATTTCT-AGTTCAAATATATATACGCA--TTTTCTGTA--TATGACTATATGCAAAGGTATACATTTA---TGTATATATATTTGGTAAAATCACATCTTTGAAT--AATCCATAGCTCGTCAGA
droVir3 scaffold_12823:519093-519222 + GT-AT----TAT------------CT----AC-----------ATATATCT-ATGTCAAATATATATATCCCCATTTTGTATA--ACTATTTATATGCAAGGGTATACGTTTA---CGTATATATATTTGTTAAAATCACATCTTTGAAT--GCTATATAGCTCGTTAGC
droMoj3 scaffold_6496:318093-318227 + AG-TT----GCAGA--A-------GTATTCATATGTA------CAAAATCTTATATCAAATATATATATATG--TCCCA----------TTTGTATGCAAGGGTATGCGTTTC-TCTATATATATATTTGTTAAAATCACATCTTTGAAT--GGTATTTAGCTCGTTAGC
droGri2 scaffold_15245:6158007-6158151 - TT-GC----CAGGA--G-------TC-T-TACAACTAACTAC-TTATATCT-ATATCAAATATATATACTCA--CTTTGTGTATAGCTACGTATAAGCAAAGGTATACGCTTG---CGTATATATATTTGTTAAAATCACATCTTTGAAT--GGTATATAGCTCGTCAGC

dme-mir-4980 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:3673811-3673963 + CAAAAACGA--------AAGAGGGGAAGAGGCTGAGAGCGGGAAAGTGAGAAGTAGAGAGCGCAGATAGGGAGTGGG-AGCTTAT----------------------------A-----------------CCGTTATAAAGCCAACTTCCGTT--CT----GCGTTTCGTTCCAAC-C-----CCCCACCTCTCT-------TTCCC---TCTTTTGGCATTGCAAAA
droSim1 chr2R_random:948112-948272 + CAAAAGCGGATGAGGTGAAGAGGGGAAGAGGCGGAGAGCGGGAAAGGGCGAAGAAGAGAGCGCAGACAGGGAGTGGG-AGCTTGT----------------------------A-----------------CCGTTATAAAGCCAACTTCCGTT--CT----GCGTTTCATTCCCCC-GCA---CCCCACCT--CT-------TTCCC---TCTTTTGGCATTGCAAAA
droSec1 super_1:1330268-1330428 + CAAAAGCGGATGAGGTGAAGAGGGGAAGAGGCGGAGAGCGGGAAAGGGCGAAGAAGAGAGCGCAGACAGGGAGTGGG-AGCTTGT----------------------------A-----------------CCGTTATAAAGCCAACTTCCGTT--CT----GCGTTTCATTCCCCC-GCA---CCCGACCT--CT-------TTCCC---TCTTTTGGCATTGCAAAA
droYak2 chr2L:16346698-16346837 + CAAAAGGGG--------AAGA--------CGCGGACAACGGGAAAGGGCAAACACGAGAGCGCAGGAAGGCAGTGGG-AGCTTGT----------------------------A-----------------CCGTTATAAAGTCAAATTCCGTT--CT----GTGTTTCTTTTCACC-------CCCCACCT--CT-------T--CC---TCTCTTGGCATTGCAAAA
droEre2 scaffold_4929:18933782-18933931 - CCAGAGGGG--------AAGGAGGGAAGAGGCGGACAGCGGAAAAGGGCGAA-CAGTGAGCGCAGGAAGGGAGTGGG-AGCCTGT----------------------------A-----------------CCGTTATAAAGTCAATTTGCGTT--CC----GCGTTTCTTTCCACC-C-----CCCCACCT--CT-------TCATC---TCTTTTGGCATTGCAAAA
droAna3 scaffold_13266:10179298-10179443 + AGCAGACGA----GGTGCAGGGGGAGAATAAAAATAACCAAAAAAAATAATAAGATAAAGTGAACTAAGAGAGTTGG-AATTT------------------------------------------------CCATATCAGCACCCATTTTCGAT--TT----ACATTCTCCTCCACCCT-----CCCCACCC--------------CACCTGCTG---CTGGTGCA--A
dp4 chrXL_group1e:1273472-1273542 - AGAGAGAGA--------GAGAGAGAGAGAGAGAGAGAGAGGGAGAGGGAGAGGGAGAGGGTGATGGTTGGGTGTGGG-AG-----------------------------------------------------------------------------------------------------------------------------------------------------
droPer1 super_4:2253896-2254021 + CAAGAGAGA--------GAGAGAGAGAGAGAAAGAGAGCGAGAAAGATAGAAGCAGAGCGAGAGCGAAAGTGATAGA-TAT--------------------------------A-------------TAGTTTATACCAAACTTTTTTAATAAT--CC----ATGTTCTTTTCGATGTT-----T---------------------------------ATTTTC-----
droWil1 scaffold_181096:5834838-5834931 + AGAGACAGA--------GAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAAGAGTGGTGAGTGGTGGAAGGGGGTGGG-GGCCAAT----------------------------A-----------------TTGTGCTAGTGCTGAAT---------------------------------------------------------------------------------
droVir3 scaffold_12963:19208738-19208883 + TTAGTAAGA--------GAGAGAGAGAGAGAGAGGGAGAGCCAGCGAGTA--ATAGAGAGCAC---------ATGCG-AGCATAA----------------------------A-----------------CCGGTTTGAGCGC--TCTCCGCTGGCTATGCGCGCT----CCCAGG-C-CAGCGCTCACCT--GTGTACAAGTTCAC---TTTGTTGTTGTTG-----
droMoj3 scaffold_6496:13778911-13779004 + CAACAGAGA--------CAGAGAGAGAGAGAGAGAGAGCGGGAGAGAGAGAAAGAGAGAGAGA-----GAGAGAGGGAGGCCATG----------------------------G-----------------CTGTAGCTGAGCTGCTT-----------------------------------------------------------------------------ACGT
droGri2 scaffold_15110:15752678-15752830 - AGTGAGAGA--------GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA----------------GAGAGCTGGG-CACTTGTGTCTGGGGCTGTGCTCATGCAAAAATAAATGCGAACTGTGTGCAGATCGTAA---------------AT--TA----AAGTTTCTCTCGCTC-C-----CCCTATTT-------------CTC---TGTTC--CTGTT------

dme-mir-4981 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:3902738-3902863 + GGTTATC-------------------------------------CCTGC-CACATGGCCACGTGCCCG-CAAGACGCCTTCGGCCGGCG-------------------------------------------------------------------------------------------------------CAAAGTTTCAATTTGATATTCCTTGGC-CG-----GTCGAG--CAGCGTCTTGGGG-TTGTTCG--------TGGATTAAGTTCGATTC--------------------------CTAT
droSim1 chr2R_random:1106077-1106202 + GGATATC-------------------------------------CCTGC-CACATGGCCACGTGCCTG-CAAGACGCCTTCGGCCGGCG-------------------------------------------------------------------------------------------------------CAAAGTTTCAATTTGATATTCCTTGGC-CG-----GTCGAG--CAGCGTCTTGGGG-TTGTTCC--------TGGATTAAGTTCGATTC--------------------------CTAT
droSec1 super_1:1540674-1540799 + GGATATC-------------------------------------CCTGC-CACATGGCCACGTGCCCG-CAAGACGCCTTCGGCCGGCG-------------------------------------------------------------------------------------------------------CAAAGTTTCAATTTGATATTCCTTGGC-CG-----GTCGAG--CAGCGTCTTGGGG-TTGTTCC--------TGGATTAAGTTCGATTC--------------------------CTAT
droYak2 chr2L:16559915-16560042 + GGATATC-------------------------------------CCTGC-CACATGGCCACGTGCCTG-CAAGACGCCTTCGACCGGCG-------------------------------------------------------------------------------------------------------CAAAGTTTCAATTTGATATTCCTTGGC-CG-----AACGAACGGAGCGTCTTGGGG-TTGTTTC--------GGGATTACGTTCGATTC--------------------------CGAT
droEre2 scaffold_4929:18723379-18723500 - GGATA-C-------------------------------------CCAGC-CACATGGCCACGTGCCTG-CAAGACGCCTTCGGCCGGCG-------------------------------------------------------------------------------------------------------CAAAGTTTCAATTTGATATTCCTTGGC-CG-----GTC-----GAGCGTCTTGGGG-TTGTTTC--------GGGATTGAGTTCGATTC--------------------------CGAT
droAna3 scaffold_13266:16222514-16222662 + GGAGATC-------------------------------------CTTG--CGTGTGGCCACGTGCCGGGTGAGACGCCTTCGGCCGGTA-------------------------------------------------------------------------------------------------------CAAAGTTTCAATTTGATATTCCTTTGGAGTTGCCTTCGGAGTTGAGCGTCTTGGGG-TTGTTCC--GGGCCATGGATTAAGTTG-----AGAAA-ATG------CAG----A-CTATGT
dp4 chr3:5536552-5536721 + GGTTG-C---------G------------CTGCTGCTTATGGTG----CTGGTGTTGCCACGTGCC-A-CAAGACGCCTTCATCTGGCGGTT------------------------------------------------------------------------------------------GGT-CTGGACAAAAGTTTCAATTTGATATTCCTTTGC-CT-----T--GCC--GAGCGTCTTGGGG-TTGTTTC--AGGGCATGGATTAAGTTT---TCAGGCAACTGGAGCAGCA------TCCGTGC
droPer1 super_2:5730715-5730884 + GGTTG-C---------G------------CTGCTGCTTATGGTG----CTGGTGTTGCCACGTGCC-A-CAAGACGCCTTCATCTGGCGGTT------------------------------------------------------------------------------------------GGT-CTGGACAAAAGTTTCAATTTGATATTCCTTTGC-CT-----T--GCC--GAGCGTCTTGGGG-TTGTTTC--AGGGCATGGATTAAGTTT---TCAGGCAACTGGAGCAGCA------TCCGTGC
droWil1 scaffold_181141:2380508-2380690 - ACCCATTTCTGGTCTCG------------GTCTCAATTTTTTTA----CTGGTGTGGCCACGTGCCA--TACGAG-----------------------------------------------------------------------------------TA-GTAAGGTCTTGCA-ACAGGGCGGT-GCGAACAAAAGTTTCAATTTGATATTCCCTTGC-CTTGACTTGGCCG--TAGCGTCTTAGGG-ATGTTTCC-GAAGCAAGGATTAAGTTT---TCAAA----G------GCAG------CTGTGC
droVir3 scaffold_12875:14800808-14801017 + GCTTCTTTG------------------------TGTCCATGGCCCTTGC-CGTGTGGCCACGTGCCA--TCAGACGCCTTCGCGCAGT---TTGACTC--------------------------------------------TGGAATGGCTGAGGGCTG-GTGGGG---CGGA-ACGGGGCAGCGGGGATTGACAGTTTCAATTTGCAAGCATGTTGC-CT-----TTTGTA--GAACGTCTTGGGGGTTGTTCGCCAGCTGACGGATTAAGTTT---TGAGGGC-A----------GCCAGATGCTGCT
droMoj3 scaffold_6496:7113415-7113501 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGTTTCAATTTGCAAGCTTGTTGC-CT-----TTTACG--GAACGTCTTGGGG-TGTCTGA--------GGGATTAAGTTTAAGTCTGGGC-AT---------GCCAG--C--TGC
droGri2 scaffold_15245:14811478-14811742 + GTTTCTTTGTG-TCCAGACCCTTGCCGCCTTGCCGC--------CTTGC-CGTGTGGCCACGTGCCAGCAGAGACGCCTTCGCGCTCA---CTGACTCGTCCCGGCCCGGCAATTGTCAGAGACGCAGATGACTGTTGCGAATAGGTTGGCAGGGGGGGGAGT-CGG---CGGACAGGGGGAAGGGGTGGTTGACAGTTTCAATTTGCAAGCTTGTTGC-CT-----TTTGCA--GAACGTCTTGGGG-TTGTTTC--AGCTGGCGGATTAAGGTT---TCAGACAG-T-------CAGCC-------AGC

dme-mir-4982 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:14607658-14607807 + TTTT-GAGTCGAAAGGACC--A----------------ACT-TTGCTGGCATTCGGTGGCCAA--------------TAATGCAATTGCATGTC-------------------------------------------------------CTTGTTGCTGTTGCAAT----GTTG-------CAGCTGGAATTGCAATTGCATTTCTAGTTGC------------------CGCTGCTG---------CTGCTCGAGTGGCAATTA--GCTGGGTGTCTC
droSim1 chr2R:13317686-13317836 + TTTTCGAGTCGAAAGGACC--A----------------ACT-TTGCTGGCATTCGCTGGCCAA--------------TAATGCAATTGCGTGTC-------------------------------------------------------CTTGTTGCTGTTGCAAT----GTTG-------CAGCTGGAATTGCAATTGCATTTCTAGTTGC------------------CGCTGCTG---------CTGCTCGAGTGGCAATTA--GCTGGGTGTCTC
droSec1 super_1:12115359-12115508 + TTTC-GAATCGAAAGGACC--A----------------ACT-TTGCTGGCATTCGCTGGCCAA--------------TAATGCAATTGCATGTC-------------------------------------------------------CTTGTTGCAGTTGCAAT----GTTG-------CAGCTGGAATTGCAATTGCATTTCTAGTTGC------------------CGCTGCTG---------CTGCTCGAGTGGCAATTA--GCTGGGTGTCTC
droYak2 chr2R:14591968-14592144 - TTTTCGGGTCGAAAGGACC--A----------------ACTTTTGTTGGCATTCGCTGGCCAA--------------TAATGCAATTGCGTGTC-------------------------------------------------------CTTGTTGCTGTTGCAAT----GTTGCAACTTGCAACTGGAATTGCAATTGCATTTCTAGTTGCTTCTCCTCTTTTTCCTGCTGCTCCTA---------CTCCTCGAGTGGCAATTA--GCTGGGTGTCTC
droEre2 scaffold_4845:8798992-8799150 + TTTC-GCGTCGAAAGGACC--A----------------ACT-TTGCTGGCACTCGCTGGCCAA--------------TAATGCAATTGCGTGTC-------------------------------------------------------ATTGTTGCTGTTGCAAT----GTTG-------CAACTGGAATTGCAATTGCATTTCTAGTTGCTCCTCA---------TGCTGCTGCTG---------CTCCTCGAGTGGCAATTA--GCTGGGTGTCTC
droAna3 scaffold_13334:1368045-1368196 + TTTT-GAGCTGCAG-----------------------------------------------------------------------------------------------TTGCAGATAAAGTTACAGTTGTTGTTGCTACTTTCACGTTGTTGTTGTTGTTGT--T----GCGG-------CAGCTGCAGTTGCAGTTGCAGTTGCAATTGT------------------TGCTGCAGCTGTTGGCCTAATGAGAGTGGCCAGCAATGCGGCACGAATC
dp4 chrXL_group3a:862470-862596 - ---------------------A----------------ACT-CTGCTGCCAGTAGTTGGCCAT--------------TGAGAAAATTGTGTGCCCTGGAATTTAATTCATTGCAAACAAA-------TTGCT-----------------GCTGCTGCTGCTGC----------------------------------TGCTGCTGTTGTTGC------------------TGCTGCTG---------CCGTTGCAGTGGCAATT---------------
droPer1 super_15:2034074-2034206 + ---------------------A----------------ACT-CTGCTGCCAGTAGTTGGCCAT--------------TGAGAAAATTGTGTGCCCTGGAATTTAATTCATTGCAAACAAA-------T-----------------------TGCTGCTG----------------------CTGCCGCTGCTGCTGTTGTTGTTGTGGTTGC------------------TGCTGCTG---------CCGTTGCAGTGGCAATT---------------
droWil1 scaffold_181096:6674642-6674780 + CTTG-GTGCCGTAT----CAAAGCTGGCATATAGTTCAACT-TCT------T-CATCGG----TGGCATCA------CGTTGCAGTTGT-TGTT-------------------------------------------------------GTTGTTGTTGTTGC-------------------------------TGTTGCAGCTGTTGTTGTTGCTGTTGTTGTTGCTGCAGCTGCTG---------CTGCTCAAGTG---------------------
droVir3 scaffold_12822:1548557-1548661 - TGTT-------------------------------------------------------------------------------------------------------------------------------------------------GCTGCTGCTGTTGCAATTGTTGCTG-------CAGCTGTTGTTGCTGTTGCAGCTGCAGCTGTAACTGT---------TGCTGC---TG------CTGGGCATAGAGCTGCTCCTG--GT--AGTGCTTG
droMoj3 scaffold_6540:8945968-8946087 + AGCC------AGCATCGAC--A----------------ACT-TGGCTGCAATTCAGGT-------------TGCAGCTACTGCTGTTGCCTGTT------------------------------------------------G------CCTGTTGCCGTTGCC------GTTG-------CTGCTGCAGTTGCAGTTGCAGTTGTAGTTAC------------------CGTTGCAA---------TTGC----------------------------
droGri2 scaffold_15245:16288597-16288735 + TGTT-G-----------TC--A----------------GCG-TTGTCGTTG--TGCTTGTTGA--------------TTTTCCAGTTGCT-----------------------------------------------------------GCTGTTGCTGTTGCAGTTGCAGTTG-------CAGCTGTTGCTGCTGTTGCAGTTGCAGTTGTTGCTGC---------TGCTGC---TG------TTGTTGTTGGTGTT---------GTCGGTGGTGTC

dme-mir-4983 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:15524903-15525041 + AA--CACATCTGCCCGCTGG-CTGGCTG------T---------CTTGACCCACTTGCT---CG---TTTGCA------TT-TCT--GAAAAATGT--ATACGCAA-----AAACCAAAATCAGAAATTCTTTTGA-GCAAG----TGTGTCATGAAATTGCC-ATTCGTTTCTGCTCTATAT-------------AC
droSim1 chr2R:14228631-14228769 + AA--CACATCTGCCCGCTGG-CTGGCTG------T---------CTTGACCCACTTGCT---CG---TTTGCA------TT-TCT--GAAAAATGT--ATACGCAA-----AAACCAAAATCAGAAATTCTTTTGA-GCAAG----TGTGTCATGAAATTGCC-ATTCGTTTCTGCTCTATAT-------------AC
droSec1 super_1:13039564-13039702 + AA--CACATCTGCCCGCTGG-CTGGCTG------T---------CTTGACCCACTTGCT---TG---TTTGCA------TT-TCT--GAAAAATGT--ATACGCAA-----AAACCAAAATCAGAAATTCTTTTGA-GCAAG----TGTGTCATGAAATTGCC-ATTCGTTTCTGCTCTATAT-------------AC
droYak2 chr2R:13649050-13649195 - AA--CACATCTGCCCGCTGG-CTGGCTG------T---------CTTGACCCACTTGCT---CG---TTTGCATTTGTATTTTCT--GAAAAATGT--ATACGCAA-----AAACCAAAATCAGAAATTCTTTTGA-GCAAG----TGTGTCATGAAATTGCC-ATTCGTTTCTGCTCTATAT-------------AC
droEre2 scaffold_4845:9723500-9723642 + AA--CACATCTGCCCGCTGG-CTGGCTGGCTG--T---------CTTGACCCACTTGCT---CG---CTTGCA------TT-GCT--GAAAAATGT--ATACGCAA-----AAACCAAAATCAGAAATTCCTTTGA-GCAAG----TGTGTCATGAAATTGCC-ATTCGTTTCTGCTCTATAT-------------AC
droAna3 scaffold_13266:9754397-9754555 - AAAACACAAACGCCCGCTGG-----CTG------T---------CTTGACCCACTTGCT---TG---TTTGCA------TT-TCTCGCAAAAATATTCATATGCAAGACCAAAATCAGAATCAGAAATTCTTTTGG-GCAAG----TGTGTCATGAAATTGCC-ATTCGTTTCTGCTCTCTATATGTACATCTAGTAC
dp4 chr3:12652733-12652881 + AA--CACGTCTCTCCGTTTGTCAGTCTTTCAGTCTGTCAGCATGCTTGACCCACTTGATGTGCT---TTTGAA------TT-TTA--GAAATATGT---------------AAATCAAATTCTGAAACATTTCGGGGACAAGTTTATGTGTCATTAAATTCCCCA----ATTTTATACTAAA----------------
droPer1 super_2:8929657-8929759 - AA--CACTTCTCTCCGTTTGTCAGTCTTTCAGTCTGTCAGCATGCTTGACCCACTTGATGTGCT---TTTGAA------TT-TTA--GAAATATGT---------------AAATCAAATTCTGAAACATTT------------------------------------------------------------------
droWil1 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:4153222-4153295 - AA--CACTTTTGAGTGCCAG-CTTTCTG------A---------GCATATC-AAACGCT---CGACATTTGTC------TT-TTT--GAGGGGGGT--TCTCGCAC-----A--------------------------------------------------------------------------------------
droMoj3 scaffold_6496:20896701-20896727 + AA--CACTTTTGACTGCTGC-CAGCCTG------C---------C---------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

dme-mir-4984 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:8141524-8141677 - TTAAAATAGT-------------------------------------------CTCAACTTCG---------------C--TCGAGGTGTGAAAACCT--------------TTTGG----CCA--GCGA----A----TAC--GCCTCGGAT--------------CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----GGCCAAATGACACGTTCGCCATGT----T-------------------------------------TTGCGGCCAA-------------------------------------------------------GTGCTTTC----------ATT
droSim1 chr2L:7922185-7922338 - TTAAAATAGT-------------------------------------------CTCCACTCCG---------------C--TCGAGGTGTGAAAACCT--------------TTTGG----CCA--GCGA----A----TGC--GCCTCGGAT--------------CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----GGCCAAATGACACGTTCGCCATGT----T-------------------------------------TTGCGGCCAA-------------------------------------------------------GTGCTTTC----------ATT
droSec1 super_3:3638638-3638791 - TTAAAATAGT-------------------------------------------CTCCACTCCG---------------C--TCGAGGTGTGAAAACCT--------------TTTGG----CCA--GCGA----A----TAC--GCCTCGGAT--------------CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----GGCCAAATGACACGTTCGCCATGT----T-------------------------------------TTGCGGCCAA-------------------------------------------------------GTGCTTTC----------ATT
droYak2 chr2L:10772572-10772720 - TTAAAATAGT-------------------------------------------CTCGAG----------------------ACGAGGTGTGAAAACCT--------------TTTGG----CCG--GCAA----A----TAC--GCCTCGGAT--------------CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----GGCCAAATGACACGTTTGCCATGT----T-------------------------------------TTGCGGCCAT-------------------------------------------------------GTGCTTTC----------ATT
droEre2 scaffold_4929:17047208-17047355 - TTAAAATAGT-------------------------------------------CTCTAC----------------------TCGAGGTGTGAAAACCT--------------T-TGG----CCA--GCAA----A----TAC--GCCTCGGAT--------------CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----GGCCAAATGACACGTTTGCCATGT----T-------------------------------------TTGCTGCCAT-------------------------------------------------------GTGCTTTC----------ATT
droAna3 scaffold_12916:9486383-9486598 - TTTAAATAGT-------------------------------------------CTCTCG---------AGGGTC----T--TCGGGGTGTGAAAACCT--------------TTCGGTTAGCCA--GCCA---GCGA--GAC---ACTTAACTCACTTCGTGGCTTCCAAATCACGTTTCAAGATCGAGGTAAATTCTTTGACGTATTCGCT-----GGCGAAATGGCACGTCTGACATGG----AATGGCATGGCATGAGATGGGCATGGTATGGTTGGTTGGTGCGACTAA---------------------------------------------------ATA-ATGGTTTC----------ATT
dp4 chr4_group3:2877715-2877892 + TTAAAATAGTTGCAGCCCACAA-------GTCACATGCCGCCGCCGGCGCATT--GGACAT--------------------TGGAGGTGTGAAAACCA--------------AT--------------------A----TTC--GCTTCAGGT--------------CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----TGGCAAATGACACGTTTTGG---------------------------------------------------------------------------------ACCTGCAATTTCCAGCAT------------TTACTTTC----------ATT
droPer1 gnl|ti|733036400:69-254 + TTAAAATAGTTGCAGCCCACAAGTCACAAGTCACATGCCGCCGCCGGCGCATT--GGACAT--------------------TGGAGGTGTGAAAACCA--------------AT--------------------A----TTC--GCTTCAGGT--------------CCAATCACGTTTCAAGATCGAGGTGAATTCTTTGACGTATTCGCT-----TGGCAAATGACACGTTTTGG---------------------------------------------------------------------------------ACCTGCAATTTCCAGCAT------------TTACTTTC----------ATT
droWil1 scaffold_180703:2787401-2787579 - TCT-----------------------------------CTCCACCAACATAATATGGA------------------------CAAGGTGTTAAGGTCT------------CTTTTGG----ATG--GTAGTCAGT----TGC--TAGTTAACT--------------CAAATCACGTTTCAAGATCGAGGTGAATTCTTTGA-ATACTGTCA-----AGCGAAATGACACGTTTT----GT----C-------------------------------------TTA--------------------------------ACCCGCACCGGCCGGCCCCCACTTACATAGATATTTTT----------AGT
droVir3 scaffold_12963:13862249-13862454 + TTAAAGCGGC-------------------------------------------TTCAA------------------------CAAGGTGTTAAAATCG------------C-AAAGG----CCGTCACAG----CCA--CAG--TCCACAGTC--------------CGAATCACGTTTTAAGATCGAGGTGAATTCTT-AACACCGCCGCTTGCCCAGCCAAATGGCACGTTTTCAATGG----GCTGG----------------------------------------CAGCAGCCCCAAGCCCTCAGCCAGCTTCATCTGCAATTGCGACGAC------------TTTCTTTCTGGCCCAACGAAC
droMoj3 scaffold_6500:5788118-5788309 - TTGGAATACTTG--------------------------------------------AACACTGGTTACAGCGGCTAC---AACAAGGTGTTAAAAACAGAAAAAAGCGAACCAAAGG----CCG--GCACACAGCCACACAG--TCCACAGTT--------------CGAATCACGTTTTAAGATCGAGGTGAATTCTTA-CTACCGACGCTCAGCCAGCCAAATGGCACGTTTGCCATGG----C-------------------------------------AT-CGCTCAA-------------------------------------------------------CAGCTTTA----------AGC
droGri2 scaffold_15126:6028218-6028422 - TTTGAATACTTG--------------------------------------------AACACTGGTTACACCGACTTCAGCAACTAGGTGTTAAAGCCA------------CCAAAGG----CCT-TGCAG----A----CACAGTTCACAGTC--------------CGAATCACGTTTTATGATCGAGGTGAATTCTTTGGTAGAGCCGCTTACCCAGCCAAATGGCACGTTTGCTAAGCATGGACAG----------------------------------AT-C-CCCAAGAGCCCCAAGCTCTAAGCCA-----------------------------------GTTCCATC----------ATC

dme-mir-4985 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:20181738-20181869 + ATAAAAAGTATGTCACT------------------T-GGGG-GCGCTGCACT---------GGCATTGAAA-AGTGAA------TTACATTGATCGTGACATGGGAATGGAAAATGTCGCCG-----------------------------------------------------------------------------------------------------------------------------------------------AGCCATGTAAATCGTTTGGCCTACCCGTCTACCA-GCCAACC----AACCA
droSim1 chr2R:18643325-18643449 + ATAAAAAGTATGTCACT---------------TGGTG-GGG-GCGCTGCACT---------GGCATTGAAA-AGTGAA------TTACATTGATCGTGACATGGGGATGGAAAATGCCGCCG-----------------------------------------------------------------------------------------------------------------------------------------------AGCCATGTAAATCGATTG---------AAGGCC-C-GTGGCC----AACCA
droSec1 super_23:61187-61303 + ATAAAAAGTATGTCACT---------------TGGTG-GGG-GCGCTGCACT---------GGCATTGAAA-AGTGAA------TTACATTGATCGTGACATGGGGATGGAAAATGTCGCCG-----------------------------------------------------------------------------------------------------------------------------------------------AGCCATGTAAATCGATTG---------AAGGCC-C-GTG------------
droYak2 chr2R:20147877-20148015 + ATAAAAAGTATGTCACT------------------G-GGGG-GCGCTGCACT---------GGCACTGAAA-AGTGAA------TTACATTGATCGTGACATGGGGATGCGAAATGTCGCCAAACGAAAAA----ATAAATCA----------------------------------------------------TAG------------------------------------------------------------------------TGTAACTCGTTTG---------AAGGCCACACCAACT----AGTAA
droEre2 scaffold_4845:21546843-21546980 + ATAAAAAGTATGTCACT---------------A----GGGGGCTTCTGCACT---------GGCATTGAAA-AGTGAA------TTACATTGATCGTGACATGGGGATGGAAAATGTCGCCGCACAAAAAA--------AGTG----------------------------------------------------TAG------------------------------------------------------------------------TGTAAATCGTTTG---------AAGGCC-C-ATGGCCAACCAACCG
droAna3 scaffold_13266:14229911-14230049 - AAAAAAAGTATGTCACA---------------C--TG-GGG-GAACTGCACT---------GACATTGAAAAACTGAA------TTACATTGGACGGTGGATGGG-------------------------------------------TGGACTGATGGACTGATGGACTGACAGCCA-------------------------------------------------------CGATCATC--------ACTAGCGTCGCAGTTAAGTTATGTAA-------------------------------------ACCG
dp4 chr3:18492568-18492741 - GTAAAAAGTATGTCAGAGAAGAGAAGAGAACACAGTGGGCG-CTGCTGCACT---------GACATTGAAA-AGTGAA------TTGCATTGATCATGACGGGGGGTTGA-------CGCTG-------------------------------------------------ACTGCCACGAACCGCTCAGAACAATAGTGTAAATGTGGAATAATGCTCG--------------------------------------------------TAGAAC-CCATTC---------G----CA-GTCCATG----GGCTG
droPer1 super_45:328754-328870 - GTGAAATGTATTTGAAA---------------------------------CG---------AGTAACGGAA-ATTGCA------TTATTTCAATTACAAA-----------------------------------TCCAATGAGAGGGAGAGGG-------ACAGGGA----C---------------------------------------------AGGG-------------------------------------------ACCCAGCACAA-----------CCCTAGGAGCCA-GCCAGCC----AGCCA
droWil1 scaffold_180949:4063354-4063494 - ATTGAGGGCGTGATTTA------------------TG-CCC-GATCTACCCC---------ATCATTTAAT-GTTAAAGACAATGCTAATTGGCCATTAAAATAGGCCG-----------CA------------------------ACAGACAC-------AAATAGT----T---------------------------------------------TGGGACCTA------AAATCAAA-------------------------------------------GCCAACCGACCACCA-GCCAACC----AGCCA
droVir3 scaffold_12875:7276052-7276211 + GG----------------------------------------GCGCTGCATTTGCCAGGCCAGAGTTAAAA-AGTGAA------TTGAATTGGCCGCTTGATTGA-------------------------------------------CAG-CCGACGGGCTGA-------------------------------------ATATGTGCAGCAATGCCAACAAATCGATGCCAAAGTCAGTGTCAGTCCCACGTAATCGACAATCAGTTATTTAC-----------------------A-TACGAGC----CACAA
droMoj3 scaffold_6473:1699609-1699741 - ATAATCTATTAGTTATT---------------TAATA-TAT-GT------------------------------CAATCATTCAGCCACTCAATCATTAA-----------------------------------GTTAATCAACGAGTAACTC-------AATCAGT----C---------------------------------------------AGTCATTCAGTGCCTCAATCGTT----------------------------------------AAGTCTTCCAATAAGTCA-CTCAATC----AGTCA
droGri2 scaffold_15203:4626832-4626941 - GCCCATGCCA--------------------------------------------------------TAAAA-AGAGTT------TTGAACTAATCTTAAGCAGGCAGCGCAAATCGCTATAAATCAG-CTTTCTATTCTT--------------------------------------------------------TG------------------------------------------------------------------------TT---------TTGCCCCACTGTGCACCA-GCCAGCC----AGCCA

dme-mir-4986 CDS Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:9726743-9726895 - AGACTGCCAACTGGGTTC------TGCCGCTT---TTGCTGTGGCTTCTCTGCATGGGATTCCCCATTCTGCATGGCGCCGATCTCTGCCAGCCCATCGGATGGCGGAACTTCCAGTGCAGCGAGGTCGCTTCTCTGCAGGATCTGGTGGACTTGGGCG---------CCG
droSim1 chr3L:9107366-9107518 - CAACTGCCAACTGGGTTC------TGCCGCTT---TTGCTGTGGCTTCTCTGCGTGGGATTCCCCATCCTGCATGGCGCCGATCTCTGCCAGCCCATCGGCTGGCGGAACTTCCAGTGCAACGAAGTCGCCTCGCTGCAGGATCTGGTGGATTTGGGCG---------CCG
droSec1 super_0:1960228-1960380 - CAACTGCCAACTGGGTTC------TGTCGCTT---TTGCTGTGCCTTCTCTGCGTGGGATTCCCCATCCTGCATGGCGCCGATCTCTGCCAGCCCATCGGCTGGCGCAACTTCCAGTGCAACGAAGTCGCCTCGCTGCAGGATCTGGTGGACCTGGGCG---------CCG
droYak2 chr3L:9698225-9698377 - CAACTGCCAATTGGGTTC------TGCCGCTT---TTTCTGTGGCTTCTCTGCGCGGGATTCCCCAGCCTGCATGGTGCCGATCTCTGCCAGCCCATCGGCTGGCGGAACTTCCAGTGCAACGAGGTCGCTTCTCTGCAGGATCTGGTCGAATTGGGCG---------CCG
droEre2 scaffold_4784:9713780-9713932 - CAACTGCCAATTGGGTTC------TGCCGCTC---TTTCTGTGCCTTCTCTGCGCGGGATTCCCCAGCCTGCATGGAGCTGATCTCTGCCAGCCCGTCGGGTGGCGGAACTTCCAGTGCAACGAGGTCGCTTCTCTGCAGGATCTGGTCGACCTGGGCG---------CCG
droAna3 scaffold_13337:3652327-3652482 + TGCCAGTCAAATGGACTC------TGTTGCCTTGCTTTTTGTGGCTCTTCTCGAAGGGGCTTCCCTCCACAAGAGCTCAAGATCTTTGCCAGCCCCGAGGTTGGCGCAACTTCGAGTGCCTTGAAGTGGCTTCTCTGCAGGATCTAGTGGATTTGGGGG---------CCG
dp4 chrXR_group6:9932877-9933023 + TGAATGCCAATTGGGTTT------TGTCC------GCTCTGTGGCTCTGCTGCAGGGGCTTCCCCC---AGGTCGGGGCTCTTCCCTGCCGGACTCTGGCCTGGCGCAGCTTCGAGTGTCGTGAATTAGCCAGTCTGCAGGATCTGTCTGATGTGGGGG---------CCG
droPer1 super_61:212952-213098 + TGAATGCCAATTGGGTTT------TGTCC------GCTCTGTGGCTCTGCTGCAGGGGCTTCCCCC---AGGTCGGGGCTCTTCCCTGCCGGACTCTGGCCTGGCGCAGCTTCGAGTGTCGTGAATTAGCCAGTCTGCAGGATCTGTCTGATGTGGGGG---------CCG
droWil1 scaffold_180949:1195301-1195459 + CGAATTTCCAGTGGTTTT------GGCCGTTG---GCTTTATGGCTTGTATGTCGGTGCTTCCCGC---GGTGCACAGCTCAAGTCTGTAATCCCCGCGGCTGGCGTAACTACGAATGCAGCGAATTGGCTAGTCTAGAGGATTTAATAAATTCTGAAGGCTTGTCCACTG
droVir3 scaffold_13049:8736379-8736540 + CGAATGCCAAACAGTTCTGGACTTGG---TCA---GTTCTCTGGCTGCTCTGCTGGGCTGTGCCCC---GTGCGTTGGCGCAGTTGTGCGAGGCGCAGGGCTGGCGCAGCTTTGAGTGCCGCGAGCTGGGCAGCCTGCAGGAGCTGATCAATGAGAAGGCCTTGCCCACTG
droMoj3 scaffold_6680:6608267-6608428 - TGAATGCGCAACCTTTGCGCCTAGGT---CCA---GTCCTCTGGCTGCTGTGCTGCGGCCTTTCCC---AGGTGCTGAGTCAGATATGCGAGGCTCAAGGCTGGCGCAGCTTCGAGTGTCGTGAGCTGAGCAGCCTGAAGGAGCTGAAGAACGTTAGGAACTTTCCCAAAG
droGri2 scaffold_15110:4482444-4482593 + TGTTCTACACTTGG---------------CCA---ATTCTTTGCCTGCTCTGCTTTGGGTTTTGC--CCTGGAT-TGGCTGTGGTCTGTGAGGCTCAAGGCTGGCGTAGTTTTGAGTGCCGCGAATTGAGCAGCCTGCAGGAGCTGATCGATGTGAAGGCATTTCCCACCG

dme-mir-4987 CDS Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:10840329-10840491 - ATCAGTCGT---CTGTTGGCGGTGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGTGCGGCACGATTCTCACAGCAGGGCTCCAGCTCGGCCAAAAAATCGGTCGTCGCCATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAGAACAAGAAGAAAATGGT-------
droSim1 chr2L:10648081-10648243 - ATCAGTCGT---CTGTTGGCGGTGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGTGCGGCACGATTCTCACAGCAGGGCTCCAGCTCGGCCAAGAAATCGGTCGTCGCCATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAGAACAAGAAGAAAATGGT-------
droSec1 super_3:6258415-6258577 - ATCAGTCGT---CTGTTGGCGGTGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGTGCGGCACGATTCTCACAGCAGGGCTCCAGCTCGGCCAAGAAATCGGTCGTCGCCATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAGAACAAGAAGAAAATGGT-------
droYak2 chr2L:7248063-7248225 - AACAGTCGT---CTGTTGGCGGTGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGTGCGGCACGATTCTCACAGCAGGGCTCCAGCTCGGCCAAGAAATCGGTCGTCGCCATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAAAACAAGAAGAAAATGAT-------
droEre2 scaffold_4929:14589948-14590110 + ACCAGTCGT---CTGTTGGTGGTGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGTGCGGCACGATTCTCACAGCAGGGCTCCAGCTCGGCCAAGAAATCGGTCGTCGCCATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAGAACAAGAAGAAAATGAT-------
droAna3 scaffold_12916:14695622-14695781 - ACCAATCGT---CCGTGGGCGGTGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGAGCGGCACGTTTCTCGCAGCAGAGCTCCGGCTCAGCCAAGAAATCTGTCGTCGCCATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAGAACAAAAAGAAGAT----------
dp4 chr4_group4:3045338-3045500 - AACAATCGT---CTGTGGGTGGGGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGGGCGGCACGTTTCTCGCAGCAGGGCTCCGGCTCGGCTAAGAAATTTGTCGTCGCCATTGCAAGTTCGCCTTTTGGTCTCACCACGGCCAAAAACCGGAAGAAACTGAT-------
droPer1 super_10:2060188-2060350 - AACAATCGT---CTGTGGGTGGGGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGGGCGGCACGTTTCTCGCAGCAGGGCTCCGGCTCGGCTAAGAAATTTGTCGTCGCCATTGCAAGTTCGCCTTTTGGTCTCACCACGGCCAAAAACCGGAAGAAACTGAT-------
droWil1 scaffold_180703:3531157-3531322 + AACATTCGAGTAGTGTTGGCGGTGCCGTTGACGATGACTCAGCGCGTTTGCAACAGCGTGCGGCACGATTCTCTCAGCAGGGCTCTGGTTCGGCTAAGAAATCGGTCGTTGCGATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAGAATAAGAAGAAAATGTT-------
droVir3 scaffold_12963:15772752-15772915 + ATTCGTCGT---CGGTGGGCGGTGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGTGCGGCACGTTTCTCACAGTCGAGCAGCGGCTCGTCTAAGAAATCTGTCGTCGCAATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAGCACAAGAAGAGATTGCAG------
droMoj3 scaffold_6500:18770378-18770547 + ATTCGTCGT---CGGTTGGCGGTGCTGTTGATGATGACACAGCGCGCTTGCAACAGCGTGCGGCACGTTTCTCACAGACGAGCGGTGGCTCGGCTAAGAAATCTGTCGTCGCAATTGTAAGCTCACCGTTTGGTCTCACCACGGCCAAGCACAAGAAGAGATTGCAGGCCTCG
droGri2 scaffold_15126:2074135-2074298 - ATTCGTCGT---CGGTGGGCGGTGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGTGCGGCACGTTTCTCACAGTCGAGCAGCGGCTCGGCAAAGAAATCTGTCGTCGCCATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAGCACAAGAAGAGATTGCAG------

dme-mir-5 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:15548648-15548746 - TTC----------AT-CGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTT----CCTAACATATCACAGTGATTTTCCTTTATAACGCATGTTTAAA---GTCCAC
droSim1 chr2R:14254083-14254180 - TTC----------AT-CGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTC----CC-AACATATCACAGTGATTTTCCTTTATATCGCATGTTAAAA---GTCCAC
droSec1 super_1:13063377-13063475 - TTC----------AT-CGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTC----CCGAACATATCACAGTGATTTTCCTTTATAACGCATGTTTAAA---GTCCAC
droYak2 chr2R:13624045-13624143 + TTT----------AA-CGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-TTC----CCTAACATATCACAGTGATTTTCCTTTATAACGCATGTACAAA---GTCCAC
droEre2 scaffold_4845:9748899-9748997 - TTT----------GA-CGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTC----CCTAACATATCACAGTGATTTTCCTTTATAACGCATGTAAAAA---GTCCAA
droAna3 scaffold_13266:9731665-9731765 + TTC----------TA-AGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-ATCC-CTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGCAG-TT---GTCCAA
dp4 chr3:12677226-12677327 - TTC----------CTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATTC-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGTCT-GC---GCCCAC
droPer1 super_2:8906345-8906446 + TTC----------CTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATTC-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGTCT-GC---GCCCAC
droWil1 scaffold_180701:1651453-1651556 - TTT----------TTCTGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTAGATTC-ACCGTTATATATCACAGTGATTTTCCTTTATAGCGCATGCAT-GTTCTGTC--C
droVir3 scaffold_12875:4112452-4112549 + TAA----------AT-TGGGTCATGCTCTAAAAGGAACGATCGTTGTGATATGCGTTC-ATTA-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----A---GCCCGT
droMoj3 scaffold_6496:20936453-20936560 - TGCAAACTCGATGAA-TGGGCCATGCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATCG-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----A---GTCCCC
droGri2 scaffold_15112:2108518-2108620 - GTC------G---TTATGGGTCACTCGCTAAAAGGAACGATCGTTGTGATATGCGTTC-ATTAAATCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGCTC--T---GCCCAA

dme-mir-6-1 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:15548493-15548604 - AACTTAA-----------------------TCACAGCCTTTAATGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATATACC---ATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACATC----------------ATT
droSim1 chr2R:14253929-14254041 - AACTTAA-----------------------TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATATACC---ATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-GCATTTTACATC----------------ATT
droSec1 super_1:13063224-13063336 - AACTTAA-----------------------TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATATACC---ATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-GCATTTTACATC----------------ATT
droYak2 chr2R:13624186-13624297 + AGTTTAA-----------------------TCACAGCCTTTAACGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATAACAA---ATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACATC----------------ATT
droEre2 scaffold_4845:9748744-9748855 - AGCTAAA-----------------------TCGCAGCCTTTAAAGTAGAGGGAATAGTTGCCGTGCTGTAAGTTAATATATC---ATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACATC----------------ATC
droAna3 scaffold_13266:9731810-9731917 + ---------------------------------CCGCCTTTAAAGTAGAGAGAATAGTGGCTGTGCTGTAAGTTT------C--AAAATCTATATCACAGTGGCTGTTCTTTTTGCACCTAAAGTGC--CAAACAGCCAAACCCGAG------AAT
dp4 chr3:12677072-12677187 - AC-----------------------------ACCAGCCTTTGAAGTAGAGAGAATAGTTGCTGTGCTATATGTCC----TTCG-ACTCTATATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACAGCCAAG-----GAATCGCGTT
droPer1 super_2:8906485-8906600 + AC-----------------------------ACCAGCCTTTGAAGTAGAGAGAATAGTTGCTGTGCTATATGTCC----TTCG-ACTCTATATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACAGCCAAG-----GAATCGCGTT
droWil1 scaffold_180701:1651298-1651414 - T---CAA-----------------------C--CAGCCTTTAAAGTAGAGAGAATAGTTGCTGTGTTTTATGCCC----TTTT-CAATTTCATATCACAGTGGCTGTTCTTTTTGTGCCTAAAGTGC--CCCACAACAACA-----ACAACAACAC
droVir3 scaffold_12875:4112589-4112722 + GACTTAAAACTATATCGCCCAGTTATCTGTTTATAGCCTTTAAAGTAGAGAGAATAGACGCTGTGCTGTATGTTT----TGCGTATGGTCTATATCACAGTGGCTGTTCTTTTTGTACCTGAAGCGC--CGTACAAC----------------GTT
droMoj3 scaffold_6496:20936294-20936412 - TATTTATTTCTCTAGTGT-----------TTTTTCGCCTTTAAAGTAGAGAGAATAGATGCTGTG-----AGTATATCTGTT---GCATTTATATCACAGTGGCTGTTCTTTTTGTACCTAAATGGC--CAGACAGC----------------ATT
droGri2 scaffold_5621:3389-3488 + A----------------------------------GCCTTTAATGTAAAGAGAATAGATGCTGTGCTGTATGTTG----AACGTATTGTCTATATCACAGTGGCTGTTCTTTTTGTACCAAAAGTGC--CGTACAAC----------------AAA

dme-mir-6-2 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:15548359-15548462 - TAACCA---------------------TGCCG--TTTTTAACCCAAGGGAACTTCTGCTGCTGATATATTAT-----------TGA-------------AAAA----CTACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droSim1 chr2R:14253794-14253897 - TAACCA---------------------TGCCG--TTTTTAACCCCAGGGAACTTCTGCTGCTGATATATTAT-----------TGA-------------AAAA----CTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droSec1 super_1:13063092-13063195 - TAACCA---------------------TGCCG--TTTTTAACCCCAGGGAACTTCTGCTGCTGATATATTAT-----------TGA-------------AAAA----CTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droYak2 chr2R:13624327-13624430 + TAACCA---------------------TACCG--TTTTTAACCGCAGGGAACCTCTGCTGCTGATATATTAT-----------TGA-------------GAAA----CTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droEre2 scaffold_4845:9748613-9748715 - AACCCA---------------------TACCG--TTTTTAACCCCAGGGAACCTCTGCTGCTGATATATTAT-----------TGA--------------AAA----CTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAG
droAna3 scaffold_13266:9731948-9732061 + ATATTA---------------------TTCCG--GTGTTAGCCCCAGGGAACTGTTGCTGCTGATATATTATTCTCCCAAAAA-AA-------------AAAT----CACCTATATCACAGTGGCTGTTCTTTTTGGCTGCACCGACAAG-TTCAC
dp4 chr3:12676931-12677045 - TCCCCG---------------------TGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCTTTGA---------------CA----TTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAA
droPer1 super_2:8906627-8906741 + TCCCCG---------------------TGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCTTTGA---------------CA----TTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAA
droWil1 scaffold_180701:1651131-1651259 - TTTTTA---------------------AAGTTTTTGTTTAACCGCAGGGAACTGTCGCTGCTGATATAT-----ATATATTATTGTTATATATAATTTAAAAATGATTTTCTATATCACAGTGGCTGTTCTTTTTGGTTTTACGATCATT-TTCAA
droVir3 scaffold_12875:4112748-4112878 + TAAATATTTGCTGACAAATTTCTTATGTGCTA--TGTTTAACCGCAGGGAACTGCTGCTGCTGATATACTGTATAGATTATATCGA----------------------TTCCATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAATC-CACAA
droMoj3 scaffold_6496:20936121-20936236 - TATCCA------GAGA-----------GATTG--CGTTTAACCGCAGGGAACTGCTGCTGCTGATATACTATA----TGTATTTGT---------------CA--GTACTCTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAAATAGCCAA
droGri2 scaffold_15112:2108071-2108181 - TTCACC-------------------AATGCTA--TGTTTAACCACAGGGAACTGCTGCTGCTGATATAC-----AACCATAT-TTA-------------TACA----CGACTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCCATT-TGCAA

dme-mir-6-3 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:15548206-15548315 - AAA-----TTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTTGAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droSim1 chr2R:14253641-14253750 - AAA-----TTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTCGAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droSec1 super_1:13062939-13063048 - AAA-----TTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTCGAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGT
droYak2 chr2R:13624474-13624583 + AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTCGAAACTCT----CTCAATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACAT
droEre2 scaffold_4845:9748460-9748569 - AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTCGAAACTCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGT
droAna3 scaffold_13266:9732107-9732212 + AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT----ATTCG----CATCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGT
dp4 chr3:12676789-12676898 - AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCAAGTTTTG----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCACCGA
droPer1 super_2:8906774-8906883 + AAA-----TTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCAAGTTTCG----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACGA
droWil1 scaffold_180701:1650985-1651090 - CAT-----TT----TTTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTATACCATTTTGTTTAACAA--TATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATCAAC--
droVir3 scaffold_12875:4112942-4113050 + CGC-----TCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-CGACCTTTG----TACTCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTCTCAACTT
droMoj3 scaffold_6496:20935943-20936057 - AATCGTGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCGAATTCATT----TAATCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGT
droGri2 scaffold_15112:2107905-2108014 - A-C-----TCATAAATTGTTTAAAAGGAAGAGAACGCTCGCTGCTGATGTAGTTCATGATTCA----AATATTTTATATCACAGTGGCTGTTCTTTTTTGTTTATCAATGATTCAACTT

dme-mir-7 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:16493557-16493674 + GATTGGTC-CTCC-TGGGAGTGCATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTTTGGTAA---TAACAATAAATCCCTTGTCTTCTTACGGCGTGCATTTG-TGCTCTTCATTCT----------A
droSim1 chr2R:15154934-15155051 + GATTGGTC-CTCC-TGGGAGTGCATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTTTGGTAA---TAACAATAAATCCCTTGTCTTCTTACGGCGTGCATTTG-TGCTCTTCATTCT----------A
droSec1 super_1:14047859-14047976 + GATTGGTC-CTCC-TGGGAGTGCATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTTTGGTAA---TAACAATAAATCCCTTGTCTTCTTACGGCGTGCATTTG-TGCTCTTCATTCT----------A
droYak2 chr2R:12702727-12702844 - GACTGGTC-CTCC-TGGGAGTGCATTTCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTTTGGTAA---TAACAATAAATCCCTTGTCTTCTTACGGCGTGCATTTG-TGCTCTTCATTCT----------A
droEre2 scaffold_4845:10640174-10640291 + GATTGGTC-CTCC-TGGGAGTGTATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTTTGGTAA---TAACAATAAATCCCTTGTCTTCTTACGGCGTGCATTTG-TGCTCTTCATTCT----------A
droAna3 scaffold_13266:4109353-4109468 - TGGGAGTC-CT-G-TGGAAGTGCATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTTTATGGTAA---TAACAATAAATCCCTTGTCTTCTTACGGCGTGCATTCG--GCTCATCACTCT----------A
dp4 chr3:8655644-8655762 - GATTGGCCTCTCC-TGGGAGTGTATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTCTGCTAA---TAACAATAAATCCCTTGTCTTCTTACGGCGTGCATCTG-TGCTCTTCATTCT----------A
droPer1 super_4:2540080-2540198 - GATTGGCCTCTCC-TGGGAGTGTATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTCTGCTAA---TAACAATAAATCCCTTGTCTTCTTACGGCGTGCATCTG-TGCTCTTCATTCT----------A
droWil1 scaffold_180700:3423572-3423692 - AAATTGTGTGTGG-T-GGAATGCATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTTTAATAAAATTAACAATAAATCCCTTGTCTTCTTATGGCGTGTATTTAAAGCTCTTCATT-T----------G
droVir3 scaffold_12823:2295157-2295274 - G--TCGT-----C-TCCAAATGCTTTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTCTGCTAA---TAACAATAAATCCCTTGTCTTCTTATGGCGCGCAT-TC-TGCTCTTCATTTATAATA--A-TT
droMoj3 scaffold_6496:1650020-1650148 - TAACCGTTCGTCGTATCGAGTGCTTGCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTCTGCTAA---TAACAATAAATCCCTTGTCTTCTTATGGCTCGCAT-TG-AGCTCTTCATTTCAAATCTCGTTA
droGri2 scaffold_15245:15782213-15782323 + GTTT-------------AAATGCATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTTTGTTAA---TAACAATAAATCCCTTGTCTCCTAACGGCGCGCAT-TG-TGCTCTTCATTAT----TTC-TTA

dme-mir-79 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:16698539-16698665 + AT---GAGTGCCT----TAGAGTGAAG--------------------------CTGACTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCTTCTGCAGGTCAA-TCGTCA----------GAAACA----AT
droSim1 wck39a12.g1:600-726 - AT---GAGTGCGT----CAGAGTGTAG--------------------------CTGACTTACCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCTTGTGCAGATCAA-TCGTCA----------GAAACA----A-
droSec1 super_7:345550-345676 + AT---GAGTGCCT----CAGAGTGTAG--------------------------CTGACTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCTTGTGCAGATCAA-TCGTCA----------GAAACA----AA
droYak2 chr2R:4404406-4404531 - AT---AAGTGAAT---TGAGAGTGTAG--------------------------CTGCCTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTATACTACTTCATAAAGCTAGATTACCAAAGCATTGGCTTCTGCAGATCAA-TCATCA------------GACA----AA
droEre2 scaffold_4845:19768185-19768311 + AT---AAGTGACT----TAGAGTGCAG--------------------------CTGCCTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCTTCTGCAGATCAA-TCTTCA----------GAAAGA----AA
droAna3 scaffold_12916:15864702-15864823 - TA---TAGTGTTC----TA-----TAG--------------------------CTGCTTAACCGATGCTTTGGCGCTTTAGCTGTATGATAGATTTAAA-TACTTCATAAAGCTAGATTACCAAAGCATTGGCTTCCGCAGGCCTG-TCTTCAA---------GGAATA----AA
dp4 chr4_group3:8443957-8444103 + GA---AAGTGTTT----AAAAGTACAACAATCTAATCTGTGCTTAA----GCCCTGCTCTGCTTCTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAAATACTTCATAAAGCTAGATTACCAAAGCATTGGCTC-TGTGGAAACT-TCATCC-----------AAACA----AT
droPer1 super_1:9895076-9895222 + GA---AAGTGTTT----AAAAGTACGACAATCTAATCTGTGCTTAA----GCCCTGCTCTGCTTCTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAAATACTTCATAAAGCTAGATTACCAAAGCATTGGCTC-TGTGGAAACT-TCATCC-----------AAACA----AT
droWil1 scaffold_181061:28846-28963 - GT---AAT-------------GGATAA--------------------------TGGTCTTGCCTATGCTTTGGCGCTTTAGCTGTATGATAGATTTGA-CTACTTCATAAAGCTAGATTACCAAAGCATGGGCTCTGGCTGA--CT-TAATCA-----------ACGCAAGTGTT
droVir3 scaffold_12963:12863019-12863151 - AT---AGCC---AGGATTAGA-TGAA-------------------------CGCCGCACTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTGAA-TACTTCATAAAGCTAGATTACCAAAGCATTGGCTC-TGTGGC-CAGCTTAGCA---AAGTTGTGAAACG----AT
droMoj3 scaffold_6500:7202098-7202247 + A------GTGTCT----TGTAATGTAA-------ACGTGTTTTTAAATATTCGCCCCATTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAA-TACTTCATAAAGCTAGATTACCAAAGCATTGGCTC-TGTGG-CCAA-ACCCCAGCGAACTTGTGAAATA----AT
droGri2 scaffold_14978:831072-831198 + ATTTAAAGTGCTT----CTTCTTGGTG--------------------------CCACATTGCCGTCGCTTTGGCGCTTTAGCTGTATGATAGATTTGAA-TACTTCATAAAGCTAGATTACCAAAGCATCGGCGCCTGTGGC-CA--GCTTAA----------CAAACG----TT

dme-mir-8 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:12718922-12719038 + A-----------------------------------------TCT-----------------------------TGCTAA---------TTAGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATCCT------TT-TTATAACTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTAACCTTCAGTAC-CAC---
droSim1 chr2R:11454608-11454724 + A-----------------------------------------TCT-----------------------------TGCTAA---------TTAGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATCCT------TT-TTATAACTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTAACCTTCAGTAC-CAC---
droSec1 super_1:10223793-10223909 + A-----------------------------------------TCT-----------------------------TGCTAA---------TTAGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATCCT------TT-TTAAAACTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTAACCTTCAGTAC-CAC---
droYak2 chr2R:16257218-16257334 - A-----------------------------------------TCT-----------------------------TGCTAA---------TTAGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATCCT------TT-TTATAACTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTAACCTTCAGTAG-CAC---
droEre2 scaffold_4845:13131118-13131232 - G-----------------------------------------TCT-----------------------------TGCTAA---------TTAGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATCCT------TT-TTATAACTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTAACCTTCAGTAC-C-----
droAna3 scaffold_13266:13876642-13876748 - A-----------------------------------------TCT-----------------------------TGCTTA---------TTTGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATCCT------TTCTGATAACTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTAACC---------------
dp4 Unknown_singleton_1898:47537-47693 - AAATAACAAAAGAGGGAAACACAGTGCGGTGACGAAAACACGTTT-----------------------------TGCT-A---------TTCGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATCCT------TT-AGATACCTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTATCCATCATAAAT-CC---
droPer1 super_4:6545710-6545866 + AAATAACAAAAGAGGGAAACACAGTGCGGTGACGAAAACACGTTT-----------------------------TGCT-A---------TTCGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATCCT------TT-AGATACCTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTATCCATCATAAAT-CC---
droWil1 scaffold_180700:6381462-6381593 + C-----------------------------------------GCT-----------------------------TGCAAAAAGATTCTTCTTGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATTTT-GTACTAT-AGATATCTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTATCCATCATAAATCAT---
droVir3 scaffold_12875:10672387-10672513 - A-----------------------------------------TCT----------------GTTTGCTTGCAATTACTTA---------TTTGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATTCTTGA--TTT-AAATAATTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTATACATCA-----------
droMoj3 scaffold_6496:16285321-16285444 + C-----------------------------------------AAT-----------------------------TGCCTA---------TTTGCTAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATTCCTGT--TTT-AAATAACTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTTTCCATCATAAAT-GCAAT
droGri2 scaffold_15245:3783124-3783258 - A-----------------------------------------TTTTTATGTGAAATAATCAATT----------TGCT-------------TGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATTCTTGA--TTT-AAATAATTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTATCCATCATAAAT--C---

dme-mir-87 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:9950403-9950531 - CCAAAGT---------CCTTT--GGCAACACATTTCATTCGCGCCTGTATCTTGCTGAACCGCTGCC-ATTATGGCCAACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATC----GGAGAATTT
droSim1 chr2L:9739846-9739974 - CTTAAGT---------CCTTT--GGCGGCACATTTCATTCGCGCCTGTATCTTGCTGAACCGCTGCC-ATCATGGCCAACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATC----GGAGGATTT
droSec1 super_3:5397127-5397255 - ACCAAGT---------CCTTT--GGCGGCACATTTCATTCGCGCCTGTATCTTGCTGAACCGCTGCC-ATCATGGCCAACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATC----GGAGGATTT
droYak2 chr2L:12640967-12641095 - TCCAAGT---------CCTTT--GGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTTACA-ATTATGGTCTTCG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTTAGCATTCATC----GGAGGATTT
droEre2 scaffold_4929:10570531-10570659 - CACGAGT---------CCTTT--GGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTTGCC-ATTATGGCCTACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTTAGCATTCATC----GGACGATTT
droAna3 scaffold_12916:13789760-13789886 - TG--AAT---------CCTTTCAAGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTTACC-GATATGGCACAGA-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC----AAAAGAT--
dp4 chr4_group3:220105-220226 + TCCTAC----------CGTGT--GCTGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTAGCC-ATAATGGTCTTTCATCCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC----AC-------
droPer1 super_1:1694906-1695025 + TCCTAC----------CGTGT--GCTGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTAGCC-ATAATGGTCTTTCATCCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC-------------
droWil1 scaffold_180708:12250833-12250971 - CCA--ATCAAAATTAACATTT-GGCCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTTACCAATTGTGATCTTCATTTCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTGACGGTAACATC----GTTGGAATA
droVir3 scaffold_12723:3996238-3996344 + CTA---T---------CCCTT-GGCCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTTACA-ATTGAGACATCTAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGT-------------------------
droMoj3 scaffold_6500:14729857-14729979 - -----AT---------CCTTA--GCCGGCATCTTTCATTCGCGCCTGTATCTTGCTGAACCGTTACA-ATTGTCACATCCAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTAGCGGTCTCATC----AAAGCA---
droGri2 scaffold_15252:3661296-3661426 - TT---AT---------CCTTG--ACCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTTACC-ATTGTGACATCCAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTAGCGGCTTCATCACTTGGTGGATAG

dme-mir-927 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:15859965-15860086 - GGCAATATTAAATTGTGGTTGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATC-------------ATGTTAAAAAAAA
droSim1 chrX:12269402-12269519 - GGCCATATTAAATTGTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATC-------------ATGTTATTA----
droSec1 super_37:439539-439656 - GGCAATATTAAATTGTGGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATC-------------ATGTTATTA----
droYak2 chrX:10049094-10049217 - GGCAGTTAAAAATTGTGGGCGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTACCATTAC-------CATATTATTA----
droEre2 scaffold_4690:11188754-11188871 + GGCAATAATAAATTGTGGGTGCTGCAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATC-------------ATATTATTA----
droAna3 scaffold_13250:3108664-3108783 + TAA--------AAAAAGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGCA-TATGAAATTAGGCAAAGCGTTTGGATTCTGGAACCCTATGTATTCATTTTTATAATGTGTTTTCA---TAAAT----
dp4 Unknown_group_79:17437-17552 + ATAGATAG-ATAACGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGAGTCTGCATTC-------------A--ACAAAA----
droPer1 super_192:48564-48679 + ATAGATAG-ATAACGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGAGTCTGCATTC-------------A--ACAAAA----
droWil1 scaffold_180777:2521614-2521709 - CACAATCTGACATTG--------GTAGCGTTTTAGAATTCCTACGCTTTACCGTCGCC-TACGAAACTCGGCAAAGCGTTTGGATTCTGAAACATTATCTCTGCA-------------------------------
droVir3 scaffold_12970:3343518-3343635 - AACTTTT---AATAATGTCCATCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTG-TCCGAAATTTGGCAAAGCGTTTGGATTCTGAAACGATATATGGTCGGTAAC-------------A--ACAAAAACAG
droMoj3 scaffold_6473:7790778-7790858 - ---------------TGGCCAGCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGCAATTTGGCAAAGCGTTTGGATTCTGAAACAATA---------------------------------------
droGri2 scaffold_15203:10526906-10527015 + GATAGTAGTTTACCGTGACTATTGTATTGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGAAATTTGGCAAAGCGTTTGGATTCTGAAACGGTATGTGGTCAGAAAC-------------A------------

dme-mir-929 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:121076-121193 + TGA--C-ATGGCG---GAACCAG-------------TCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGA-CACAAC-----AGAGGAGC----A
droSim1 chr3R:194547-194664 + TGG--C-ATGGCG---CAACCAG-------------TCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAAC-----AGAGGAGC----A
droSec1 super_6:240419-240536 + TGA--C-ATGGCG---CAACCAG-------------TCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAAC-----AGAGGAGC----A
droYak2 chr3R:481089-481206 + TGA--A-ATGGCA---AAACCAG-------------TCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAACGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAAC-----ACAGGACC----A
droEre2 scaffold_4770:471031-471148 + TGA--A-GTGGCG---GAACCAG-------------TCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTC-CATAAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAAC-----ACAGGTGC----A
droAna3 scaffold_13340:11127706-11127842 + AGC--C-ACCAAC---CAACCAACCAACCAACCACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGAGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTACGTGGTGG----C
dp4 chr2:24810831-24810947 - G-A--A-GT-GCA---CGGCAA-------------TTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAAC-----AGTGGAGC----G
droPer1 super_6:111437-111553 - G-A--A-GT-GCA---CGG--G-----------ATTTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAAC-----AGTGGAGC----A
droWil1 scaffold_181089:9825565-9825678 - TGA-------------GAA---------------CTTCCTGCGGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTATATAAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAACAACAACAAC-----AAAAA-GCCACGA
droVir3 scaffold_12822:1418795-1418911 + AGGCCAAGT-GCGACGCGT--G-----------AATTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTT-CACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGACCCA-GACAAC-----GAG----------
droMoj3 scaffold_6540:34020273-34020392 + ACA--T-AT-ACG---CTACGAG-----------TTTCCTCATGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTTTTTAACGACTCCCTAACGGAGTCAGATTGAATTTCAGAGGACCCA-GACAAC-----GAAGAAGC----G
droGri2 scaffold_15074:2468173-2468294 - TGA--AAGT-GTGCCCCCG--A-----------ACTTCCTGCTGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAGTTACAAAGGACCAA-GTCAAC-----AATGCCCC----A

dme-mir-92a intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:21472213-21472337 + TTTCAGCCGAA--------TATAAAT----------------------------------------------ATGAATTTCCCGTAGGACGGGAAGGTGTCAACGTTTTGCATTTCGAAT-AAACATTGCACTTGTCCCGGCCTATGGGCGGTTTGTAAT-----AAACA------------ACTAAAATCTA-------------T----AAA
droSim1 chr3R:21300457-21300581 + TTTCAGCCGAA--------TAAAAAT----------------------------------------------ATGAATTTCCCGTAGGACGGGAAGGTGTCAACGTTTTGCATTTCGAAT-AAACATTGCACTTGTCCCGGCCTATGGGCGGTTTGTAAT-----AAACA------------ACTAAAATCAA-------------T----AAA
droSec1 super_13:258996-259120 + TTTCAGCCGAA--------TAAAAAT----------------------------------------------ATGAATTTCCCGTAGGACGGGAAGGTGTCAACGTTTTGCATTTCGAAT-AAACATTGCACTTGTCCCGGCCTATGGGCGGTTTGTAAT-----AAACA------------ACTAAAATCAA-------------T----CAA
droYak2 chr3R:25001360-25001484 - TTTCGTTCGAA--------TATGAAT----------------------------------------------ATGAATTTCCCGTAGGACGGGAAGGTGTCAACGTTTTGCATTTTGAAT-AAACATTGCACTTGTCCCGGCCTATGGGCGGTTTGTAAT-----AAACA------------ACTAAAATGCA-------------T----TTT
droEre2 scaffold_4820:6569995-6570123 - TTTCGGCCGAA--------TATGAAT----------------------------------------------ATGAATTTCCCGTAGGACGGGAAGGTGTCAACGTTTTGCATTTCGAAT-AAACATTGCACTTGTCCCGGCCTATGGGCGGTTTGTAAT-----AAACA------------ACTGAAATGAA-------------TTTTATAT
droAna3 scaffold_13340:3727762-3727906 + TTTCCATCGAA--------TAT-AAT----------------------------------------------ACAAATTTCCCGTAGGACGGGAAGGTGTCAAGGTTTTGAATT-AAATT-AAACATTGCACTTGTCCCGGCCTATGGGCGGTTTGTCAA-----ACACATCGATACATATTTTTAG---AAATATTTAAAATTTGG----ATA
dp4 chr2:23635253-23635419 - CTTTA--------------------TATGCATATCCTGTAGGACAAGACTACAGTACTACTCGGAATACCATAGAGATTGCCCGTAGGACGGGAAGGTGTCAACGTTTTAAATTTTGAAC-AAACATTGCACTTGTCCCGGCCTATGGGCGGCTTGTCAT-----ACACATCGAT-CGTACAACTAG---CAA-------------C----AAA
droPer1 super_3:6410293-6410459 - CTTTA--------------------TATGCATATCCTGTAGGACAAGACTACAGTACTACTCGGAATACCATAGAGATTGCCCGTAGGACGGGAAGGTGTCAACGTTTTACATTTTGAAC-AAACATTGCACTTGTCCCGGCCTATGGGCGGCTTGTCAT-----ACACATCGAT-CGTACAACTAG---CAA-------------C----AAA
droWil1 scaffold_181130:14578411-14578543 - CTGTAGCCGGGTGAAACATT----ATCTGCAT----------------------------------------TCAAATTTCTCGTAGGACGGGAAGGTGTCAACGTTTTGCCTTATGAATCAAACATTGCACTTGTCCCGGCCTATGAGCGGTTTGTAAAAC----GACATC-----------CTAT---CA-------------------AAA
droVir3 scaffold_12855:6880771-6880902 + CGACAATATGG--------CTTTATC----------------------------------------------ACAAACTGCTTGCAGGACGGGAAGGTGTCAACGTTTTGCTTTATGAATCAAACATTGCACTTGTCCCGGCCTATGAGCGGTTTGTGCCACAACAAACG------------ATTGAAAATAT------------GA----AAA
droMoj3 scaffold_6540:25734544-25734668 - CTGCAAT--AC--------CCAAATC----------------------------------------------ATAAATTGCTTGCAGGACGGGAAGGTGTCAACGTTTTACCTTTTGATTCAAACATTGCACTTGTCCCGGCCTATGAGCGGTTTATCTTAC----AACA------------ATCAGGTCCAA-------------T----AGA
droGri2 scaffold_14906:3023231-3023367 + TTTTT---TAA--------TATATAT------ATTCT-TAA-AC-------------------GTGTACC--ATAAATTGCTTGCAGGACGGGAAGGTGTCAACGTTTTGCATTTTGAATCAAACATTGCACTTGTCCCGGCCTATGAGCGGTTTGTGCAT----CTACA------------ACTGGT----T-------------T----AAA

dme-mir-92b intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:21477105-21477234 + AGTGCAGT------GGTACATTAAA---ACGTCACCTGATGTAGGCCGTGCCCAGTGCTTATTTGTTGCATTTTCGAAATACAAATTGCACTAGTCCCGGCCTGCAATGAGTGTCGCAGTCGACGATCTACACAGTGCA
droSim1 chr3R:21305387-21305516 + AGTGCAGT------GGTACATTAAA---ACGTCACCTGATGTAGGCCGTGCCCAGTGCTTATTTGTTGCCTTTTCGAAATACAAATTGCACTAGTCCCGGCCTGCAGTGAGTGTCGCAGTCGACGATCTACACAGTGCA
droSec1 super_13:263913-264042 + AGTGCAGT------GGTACATTAAA---ACGTCACCTGATGTAGGCCGTGCCCAGTGCTTATTTGTTGCCTTTTCGAAATACAAATTGCACTAGTCCCGGCCTGCAGTGAGTGTCGCAGTCGACGATCTACACAGTGCA
droYak2 chr3R:24996445-24996574 - AGTGCAGT------GGTACATTAAA---ACGTCACCTGATGTAGGCCGTGCCCAGTGCTTATTTGTTGCCTTTTCGAAATACAAATTGCACTAGTCCCGGCCTGCAGTGAGTGTCGCAGTCAGCGATCTGCACAGTGCG
droEre2 scaffold_4820:6565044-6565173 - AGTGCAGT------GGTACATTAAA---ACGTCACCTGATGTAGGCCGTGCCCAGTGCTTATTTGTTGCCTTTTCGAAATACAAATTGCACTAGTCCCGGCCTGCAGTGAGTGTCGCAGTCAGCGATCTACACAGTGCA
droAna3 scaffold_13340:3732627-3732749 + AGTGCAGT------GAAGCATTAAA---ACGTCACCTGATGTAGGCCGTGCCCGGTGCTTATTTGTTACT-TTTGGAAATACAAATTGCACTAGTCCCGGCCTGCAGTGAGTGTCAAAGGCAGCTATCTTCAC------
dp4 chr2:23630755-23630875 - -GTACAGT-----TGGAGCATTAAA---ACGTCACCTGATGTAGGCCGTGCCCAGTGCTTATTTGTCGTTGTTTGAAAATACAAATTGCACTAGTCCCGGCCTGCAGAGAGTGTCGCACACAACGAGCT----------
droPer1 super_3:6405653-6405778 - AGTGCAGTACAGTTGGAGCATTAAA---ACGTCACCTGATGTAGGCCGTGCCCAGTGCTTATTTGTCGTTGTTTGAAAATACAAATTGCACTAGTCCCGGCCTGCAGAGAGTGTCGCACACAACGAGCT----------
droWil1 scaffold_181130:14574160-14574279 - TGCGGAA----ATTGTATCTTTAAAAATACGTCACATGATGTAGACCGTGCCTGGTGCTTATTTGTTGCTATTTAAATATACAAATTGCACTAGTCCCGGCCTGCAGTAAGTGTCGCAAACAAC---------------
droVir3 scaffold_12855:6883792-6883910 + AGTGGTGT------GCAACATTAAA---ACGTCACCTGATGTAGGTCGTGCCTGGTGCTTATTTGTTGTTATGCGAAAATCCAAATTGCACTAGTCCCGGCCTGCAGTGAGTGTCGCAGCCAACGTTC-----------
droMoj3 scaffold_6540:25731646-25731761 - AGTGCTGT------GCAACATTAAA---ACGTCACCTGATGTAGGTCGTGCCTGGTGCTTATTTGTTGTTATGCGAAAATACAAATTGCACTAGTCCCGGCCTGCAGTGAGTGTCGCAAACAACG--------------
droGri2 scaffold_14906:3026528-3026659 + AGTGATGT---GGTGCAACATTAAA---ACGTCACCTGATGTAGGTCGTGCCTGGTGCTTATTTGTTGTTATGTGAAAATACAAATTGCACTAGTCCCGGCCTGCAGTGAGTGTCGCAAACAACAAACAACA-ACAGCA

dme-mir-932 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:6902047-6902167 + ATTT------CAAAAAGA----------GTATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TCATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGACGACCTTCATCATCT---GCT--------------AGAGA
droSim1 chr2L:6697521-6697641 + ATTT------CAAAAAAG----------GTATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TAATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGACGACCTTCATCATCT---GCT--------------AGAGA
droSec1 super_3:2435750-2435870 + ATTT------CAAAAAGG----------GTATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TAATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGACGACCTTCATCATCT---GCT--------------AGAGA
droYak2 chr2L:6007719-6007838 - ATTT------CAAAAAT-----------ATATTGGCTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGCT----TAATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGACGACCTCCATCATCT---GCT--------------AGAGA
droEre2 scaffold_4929:15815527-15815649 + ATTT------CAAGAAG-----------GTATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTCTT----TACTTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGACGACCTTAATCATCTGGAGCT--------------AGAGA
droAna3 scaffold_12916:8482562-8482668 + -------------------------------TTGGTTTCGAGACTTTCAATTCCGTAGTGCATTGCAGTGTTTT----TAAACTACAACTGCATGCTCTGCGGACTTGGCAGATTTGAAGACCAGGAGCAACT---TTT-------------AAGAAC
dp4 chr4_group5:397117-397229 + ----------------------------GCATTGGTGTCGTGGCTCTCAATTCCGTAGTGCATTGCAGTTTAATATAATTATCAACAACTGCAAGCGCTGTGGACTTGGCAGCTCCGATAGCCGCAAACA-CA---GCT--------------GCAGC
droPer1 super_5:4895121-4895233 + ----------------------------GCATTGGTGTCGTGGCTCTCAATTCCGTAGTGCATTGCAGTTTAATATAATTATCAACAACTGCAAGCGCTGTGGACTTGGCAGCTCCGATAGCCGCAAACA-CA---GCT--------------GCAGC
droWil1 scaffold_180772:6812317-6812450 - ATTT------AATCCAAA----------TTCAAGGCATTGTAGCTATCAATTCCGTAGTGCATTGCAGTTGGTA----CTAGAAAATACTGCAAGCGCTGCGGACTTGCTAACTCTGATGACCATAAAAC-CA---CCTAAAAGCAATTCCTTAGATA
droVir3 scaffold_12963:14767730-14767833 - --------------------------------TGGCAGCGAAACTCTCAATTCCGTAGTGCATTGCAGTTGATT----TTAGGAATTACTGCAAGCGCTGCAGAATTGGCAGCTCCGCTGACCGCAGACAACG---TAT----------------GGA
droMoj3 scaffold_6500:17707448-17707541 - TAT--------------------------CAATGGCTGCGTAACTTTCAATTCCGTAGTGCATTGCAGTTGATT----TAAGGAATTACTGCAAGCGCTGCAGAATTGGCAGCTCCGTTGACC-----------------------------------
droGri2 scaffold_15126:4596325-4596461 + ATTTGTGCGGCAGGAAAAGTTGGGAGTTGCAATGGCAATGTAACTTTCAATTCCGTAGTGCATTGCAGTTGATT----TAAGCAACTACTGCATGCCCTGCAGAATTGGCAGCTCTGTTGACCACATACAGCA---AAT--------------GGTGT

dme-mir-954 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr4:646737-646853 + GACTCATGCA--------------------CGTCT-TACAAACACAAGATTTTCTGGGTGTTGCGTTGTG------------TG--------TACCTGTGTACAGGCGTATTCACATGCA--------ACATCCCTTACATCTTGCTTGATTATACTCCGCCCG---------------------------------------------------------------CC
droSim1 chrU:391095-391211 + GACGCATGCA--------------------CGTCT-TACAAACACAAGAATTTCTGCGCGTAGAGTTTTG------------TG--------TACATGTGTACGTGCGTATTCACATCCA--------ACATCCCTGACGTCTTGCTTGATTATACTCCGCCCG---------------------------------------------------------------CC
droSec1 super_30:369242-369358 + GACGCATGCA--------------------CGTCT-TACAAACACAAGAATTTCTGCGCGTAGAGTTTTG------------TG--------TACATGTGTACGTGCGTATTTACATCCA--------ACATCCCTGACGTCTTGCTTGATTATACTCCGCCCG---------------------------------------------------------------CC
droYak2 chr4:700584-700681 + GACTCATGCA--------------------CGTCTTTACAAACACAAGATATTCTACGCGTTGTGTTTTG------------TG--------TACAT--------------------GCA--------ACATCCCTGACGTCTTGCGCGATTATACTCTGCCCG---------------------------------------------------------------TC
droEre2 scaffold_4512:633126-633238 - GAGACATGCA--------------------CGTCTTTACAAACACAAGATATTCTGCGCGTTGTGTTTTG-------------ACATGTATGTACAT--------------------GCAACCGTTATGCGTTCCAAGGACCCTATTAGATCGGAACACGGTCA---------------------------------------------------------------GT
droAna3 scaffold_13337:22987804-22987813 + TCCGCCCGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
dp4 chrXR_group8:8504771-8504835 + CT----------------------------------TACAAATTCTAGAATTTCTGTCTGTCTGTCTGTCTGTTTTTGTGTGTG--------TATGT----GTGTGTGTGC----------------------------------------------------------------------------------------------------------------------
droPer1 super_150:7787-7872 - AATGCATACA--------------------CGATA-TACATACATATGTGTGTGTGTGTGTGTGTGTGTG------------TG--------TGTGTGTGTGTGTGTG----------TA--------GACGTATGTGTAT-----GTGA-------------------------------------------------------------------------------
droWil1 scaffold_181130:1758155-1758267 + CACTTTTGTG--------------------CTGCG-TGTGAGT----GTGTGTGTGTGAGTTTAAGTGTG------------TG--------TATGTGCGAACATACGAATTTAGATAAA--------GATTCGTATACACATGACATTCGCATACTCACACCT---------------------------------------------------------------AC
droVir3 scaffold_13049:11239836-11239930 - TACATACGCA--------------------CA----TACATACATAGGTGTTCGTATG----------TA------------TG--------TACGTATGTAGGTGTG--CT---ATACACCCGTCAAAAGAGCTAATTTCCTTTCTTGGTTAT---------------------------------------------------------------------------
droMoj3 scaffold_6500:15364731-15364841 + GGGTCAGGCAAATTCGAATGTGAATTCAAAATACA-TACATACATATGTACAT---------GTATTGTG------------TG--------TGCAAGTGTACATGTGTGCTCACATGCA--------AACTCACTTACATAATGTATG--------------------------------------------------------------------------------
droGri2 scaffold_14822:646607-646724 + AACAAATGCA--------------------GCGCA-TGT----------------TT------------------------------------------TGATTCACAAGCCTGAACATA--------TCCTAGCATAT------------C------------GTTGGTAACGGGGCTCTGCAGAATACACACACAAACATATTGATGCTCGCGTTGATTATCATGCC

dme-mir-955 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:3299040-3299166 + TAAGGAACACTTTTTGGCC--AGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAA--ACAA-------------------------------------------------TT
droSim1 chr3L:2834561-2834687 + TAAAGAACACTTTTTGGCC--AGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAATCGCATTCAATTTCTGCACGGTAGAGATGGTACGCTTAGAAACAACCTAAA--AAAA-------------------------------------------------TT
droSec1 super_2:3291343-3291466 + TAATAAACACTTTTTGGTC--AGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAATCGCATTCAATTTCTGCAG---AGAGATGGTACGCTTAGAAACAACCTACA--AAAA-------------------------------------------------TT
droYak2 chr3L:3844747-3844864 + TAAAGTAAA---------C--AGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGT---GTGTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAA--ATGA-------------------------------------------------GT
droEre2 scaffold_4784:5981989-5982116 + AAGGAATACACTTTTGTCC--AGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTGTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAA--GCAA-------------------------------------------------GT
droAna3 scaffold_13337:7606422-7606539 + TGAAGGATGTTTTTTGAGA--AGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAAT----TTTTAACCATTCGCATTCAACCTTTGGACGGTAGAGATGGTCAGTGAGAAAGCAACCTA-----------------------------------------------------------
dp4 chr4_group1:2379981-2380081 + AATT----------TAAAA--AAATGAATAAATTCAAATGACAAAAATGTAAATGAATTAA-----------AAAATAAATTCAAATGATAAAAAGTAAA----------TGAATAAAAAAATAAAGTAAAA-------------------------------------------------TT
droPer1 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 scaffold_180698:10215726-10215851 + ATTCAAATACTTTTGCGTTAAGGTTGGCTGGCTCCATCGTGCTTAGGTTTGAGTGTCTTCGTTTGTTTTCTCTAATGGCATTCAACCTTGGAGCGATAGAGACGGCCAATCGAGAAACAGCCTAAA---------------------------------------------------------
droVir3 scaffold_12758:855562-855687 - TATGTATGGATCTCTCATC--AGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTT-TGA---GTTTTTCCTAGTGGCATTCAACCTTTGAACGGTAGAGATGGCCAACTGAAAAGCGACCTAAA--CTAA-------------------------------------------------TA
droMoj3 scaffold_6680:1909563-1909732 - TCAGGTATCCAATATG-----GGTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTT-TGT---GT-TTGGCTAGTCGCATTCAGCCTTTGAACGGTAGAGATGGCCAACTGAAAAGCGACCTAAC---TGAAAGCGAATCAAGGGAACTAGGCCAATAGGCGAGAATCATATAGAAATAGTT
droGri2 scaffold_15110:657067-657177 + TAAAG-----------------GTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTC-TGA---GT-TTGCCAAGTGGCATTCAGCCCCTGGACGCTAGAGATGGCCAACTGAAAAGCAACCTAAA--AA------------------------------------------------CAATC

dme-mir-956 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:11766816-11766993 - ATGAGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG-GCTCA-CTGGCCC---------------------AAATGCAGTTTGCC-C-GGAGA--------------CGCCGGT---------------TAACCCAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCAACAATATGCAAA
droSim1 chr3L:11132280-11132457 - ATGTGC-TCTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG-GCTCA-CTGGCCC---------------------AAATGCAGTTTGCC-C-GGAGA--------------CGCCGGT---------------TGCCCAAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCAAA
droSec1 super_0:3951754-3951931 - ATGAGC-TCTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG-GCTCA-CTGGCCC---------------------AAATGCAGTTTGCC-C-GGAGA--------------CGCCGGT---------------TGCCCAAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCTAA
droYak2 chr3L:11795661-11795838 - ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG-GCTCA-CTGGCCC---------------------AAATGCAGTTTGCC-C-GGAGG--------------AGCCGGT---------------TTACCCAG--------------CACTCAAGTGTGTAGTTTCGAGACCACTCTAATCCATTGCACCATTTTCCACTATATGCAAA
droEre2 scaffold_4784:11744386-11744563 - ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCTAGTGCTCG-GCTCA-CCGGCCC---------------------AAATGCAGTTTGCC-C-GGAGA--------------TGCCGGT---------------TTCCTCAG--------------CACTCAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCAAA
droAna3 scaffold_13337:6020232-6020390 - ATGTGC-ACTTTTCTAGATCGTTATCGCGTTTGGAATGGTCTCGTTAGCTAACGAATGGACTA------------------------------------------AAATGCAATTTGCA-A-TTCGG--------------CGCCAAT---------------TATCCAGG--------------CGCCAAAAAGTTTAGTTTCGAGACCACTCTAATCCATTGCATGATCTTCACTTGTATGCAAA
dp4 chrXR_group8:4341287-4341484 + ATGTGC-ACTTCTACTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAACTGCTTGCGCGCA-TTGGCC----------------------AAATGCATTTCGCA-C-CGGGATGGATGTG--GATG-------TGGCTGGATGTGGTGTCCCCAAG--------------CACAGCCAGGTGTAGTTTCGAGACCACTCTAATCCATTGCACCGCCCACCCATTTATGCAAA
droPer1 gnl|ti|732454354:721-914 + ATGTGC-ACTTCTACTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAACTGCTTGCGCGCA-TTGGC-----------------------AAATGCATTTCGCA-CCGGA--TGGATGTG--GATG-------TGGCTGGATGTG-TGTTCCCAAG--------------CACAGCC-AGTGTAGTTTCGAGACCACTCTA-TCCATTGCACCGCCCACCCATTTATGCAAA
droWil1 scaffold_180949:2569086-2569314 + ATGTGC-AATTATACTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAACAAGTGCTTG-GGGCAATTGAGCCAAAAACAAAACAGAAAAAAGAAAATGCACTTTGCCAT-CAAAACGAATGTGCGAATATGCAATT---------------TGGCCAGGCTCCTCGAACATAACACTAAGAGGTGTAGTTTCGAGACCACTCTAATCCATTGCCACATTTTTCACAATATGCAAA
droVir3 scaffold_13049:23989392-23989532 - ATGCGCGAAATTTAACGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAACA---------------TTGACCA---------------------AAGCGCACCTT----------------------------------------------------------------------ACAGCGTAGTGTAGTTTCGAGACCACTCTAATCCATTGCATCGTTTCTGGGCATATGCAAA
droMoj3 scaffold_6680:18620871-18621011 - ATGTGCGAAATTCAACGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAACA---------------TTAACCA---------------------AAGCGCACCTT----------------------------------------------------------------------ACGGCGTAGTGTAGTTTCGAGACCACTCTAATCCATTGCACCGTTTCTTTCCATATGCAAA
droGri2 scaffold_15110:9704256-9704382 + ATGTGCGAATCTAAGCGATCGTTATCGCGTTTGGAATGGTCTCGTTAGCTAACCAAAGCGCT--------------------------------------------------CGTT----------------------------------------------------------------------ACAGCGTAGTGTAGTTTCGAGACCACTCTAATCCATTCCATCGCTTTTCATTGTATGCAAA

dme-mir-957 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:22511281-22511406 - TTATATCCG---TAGTGT------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT--CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGCGAGCATCTA----TCCAAA
droSim1 chr3L:21812307-21812432 - TTGTATCCG---TAGTGT------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT--CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----TCCAAA
droSec1 super_11:2446955-2447080 - TTGTATCCG---TAGTGT------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT--CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----TCCAAA
droYak2 chr3L:22973852-22973977 - TCATATCCG---TAGTGT------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT--ATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCAACTA----TCCAAA
droEre2 scaffold_4784:22180738-22180863 - CCATATCCG---TAGTGT------------TGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT--CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----TCCAAA
droAna3 scaffold_13337:22247678-22247807 - TAAGATTCG---TAATATAGTAATATATACTGCCTACAATGGCCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AGTT--CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATC------------
dp4 chrXR_group8:186470-186597 - ACCCACCAG---TAA-----------ATACTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-GATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTA----ACCAAA
droPer1 super_80:80367-80497 + ACAACCCACCAGAAT-----------ATACTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AGTT-GATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTA----ACCAAA
droWil1 scaffold_180698:7262478-7262610 + TCTCTCGCA---TCATA-------------TATCCGCAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTTAGGAAGTTTTCTATTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGTTGTGATAGAAGCAACCATGAAAACAAA
droVir3 scaffold_13049:17242400-17242523 + TTATTTCCTAACTAG-----------ATAATGCCCACAATGGTTCTTAGTTTTAGACGTGTTTTGGTGTGCTTG-A-AGTT--TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCGATTGT-GAGGTAAAAGCGTCCA---------A
droMoj3 scaffold_6680:22273688-22273794 + ------------------------------TGCCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AGTT--TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GAGGCGAAAGCATCCA----G-----
droGri2 scaffold_15110:14942014-14942124 - T------------------------------ACCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AGTT--TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GTGGTAAAAGCATCCA----AATATC

dme-mir-958 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:22662374-22662495 - GGATT-TTCC-------------------------ACGATCGGCGTGTCTATGGCAAGTAGAATAGCAGGCTTATCACATGTTTAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACACCCG---------A
droSim1 chr3L:21947666-21947787 - GGATT-TTCC-------------------------ACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACACCCG---------A
droSec1 super_11:2578674-2578788 - GGATT-TTCC-------------------------ACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCA----------------
droYak2 chr3L:23128644-23128763 - GGATT-TTCC-------------------------ACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTAACTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCGAACCC-----------
droEre2 scaffold_4784:22312266-22312387 - GGATT-GTCT-------------------------ACGATCGGCGTGGCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTTACATCAAACCCG---------A
droAna3 scaffold_13337:22380395-22380515 - GAATA-TTCCA------------------------ACGACCGGTGGGTTTTTAGCAAGTAGAATAGCAGGCTTATCACAGGTTCC-TTTA-ACCCACTGTGAGATTCTTCTATTCTACTTTCGAGAAACACCCGTAAACACCGATCTC-----------
dp4 chrXR_group8:344159-344293 - GGATA-TGGC-------------------T--AGCACGATCGGTGTGTATTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGTTGACATCTAATAGAGC-AGCCCTC
droPer1 super_96:132292-132395 + G-------------------------------------ATCGGTGTGTATTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGTTGACATC-----------------
droWil1 scaffold_180698:7060886-7061014 + TGAGTTTTGA--------------CTATGACT--ATCTAACGGTGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCCTTTACAACCGGTGTGAGATTCTTCTATTCTACTTTCGAAAAGCACCCGATAACAACAAA--------------
droVir3 scaffold_13049:17089392-17089522 + TGTTT-TTTTA------ATGTTCTCTATAT--ATTTTGATCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTACAATTCA-ACCTAGTGTGAGATTCTTCTATTCTACTTTCGACAAACACCAGCTAGCGTC-----------------
droMoj3 scaffold_6680:22084806-22084935 + GTGTT-TTCC--------------CTGTGATT--CTCAGTCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTACCATTTG-ACCGAGTGTGAGATTCTTCTATTCTACTTTCGACAAGCACCAGTCAGCGTCGTTTTCG----------
droGri2 scaffold_15110:15103971-15104124 - GTGTG-TGCAGGTTTTATGGTTTTTGTTTT--ACTCTGATCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTAACATTCG-ACATGGTGTGAGATTCTTCTATTCTACTTTCGACAAACACCAGCTAGCGTCACATTCAGTTAAGTTTA

dme-mir-959 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:5640925-5641052 + CGAATTAA-ATTGATTTTAACTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTTCT---TCAG--GGAGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGTTTAAAGAAACTGCAATGATT------------ATCG----------------------------------
droSim1 chr2L:5434012-5434138 + A--ATTAA-ATAGATTTTAACTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTTCT---TTGC--GGAGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGTTTAAAGAAGCTGCAAGGATC------------ATCG----------------------------------
droSec1 super_5:3718667-3718793 + A--ATTAA-ATAGATTTTAACTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTTCT---TTGC--GGAGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGTTTAAAGAAGCTGCAAGGATC------------ATCG----------------------------------
droYak2 chr2L:13552255-13552381 - CGAGTTAA-ATTGATTTTAACTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGACAAAGACCTTTCCT----TGC--GGCGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGCTCAAAGAAACTGCAAGGATC------------ATCG----------------------------------
droEre2 scaffold_4929:5729400-5729526 + CGAGTTAA-ATTGATTTTAACTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGACAAAGAGCTTTCCT----TGC--GGCGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGCTCAAAGAAACTGCAAGGAGC------------AACG----------------------------------
droAna3 scaffold_12916:11084702-11084849 + GAAGTTAA-ATTTATTTCAATTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTCCT----GGA--GCCGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGCTCAAAAAACCAGCACAATGT------------ATCGGCCAATAGGCCAATTAACCCG-------------
dp4 chr4_group4:3182582-3182745 - TGGTTTTC-GTTTA------------------------CGTTTTTT-TTTT--------GTTTTGGTTCTATGTTCTTAGTACTTGGGTTGATAAAGACCACTCGTAGTGTGA--GAAGCCTTTGTCATCGCGGGTATTATGCAACA---------TAGCTCAAAAGCGCAACAAAATACACA-------------AAA--------AATATACACGTAAATGTGTGTGG
droPer1 super_10:2201518-2201669 - TGGTTTTC-GTTCA------------------------CGTTTTTTTTTTT--------GTTTTGGTTCTATGTTCTTAGTACTTGGGTTGATAAAGACCACTCGTAGTGTGA--GAAGCCTTTGTCATCGCGGGTATTATGCAACA---------TAGCTCAAAAGCGCAACAAAATACACA-------------AAA--------AATATACACG-------------
droWil1 scaffold_180708:8626283-8626424 - AGTGAAAA-AGTGACTTAAGTTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACAAAATGT---TTACCAATCGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGCTCAAAAGTTCAACATAATAATTAAGAATTAACTTTG----------------------------------
droVir3 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:14018136-14018207 + TGATGTAATAAGTGTTTTAGCTTT-----------------------------------------AAGTTGTGCCATT-------------------------------------------------------------TTAAATTG---------AAAAAAGTG-AAGATTGAAAATTG------------ACTA----------------------------------
droGri2 scaffold_15252:3146904-3147001 + CAAAGAGT-AGCAGGAGTAGTTAAGTTGTAGTTTCTTACGGTTTTTTTTTTAATAACATGCT--------------TTAGTGCT--------------------------------------------------------------TCAATGTAGGTGGCTCAA---------GATATTT------------GTTG----------------------------------

dme-mir-960 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:5641048-5641170 + TATC---G-----TA------------CCGCCCAC---------------------G---GGTTTTGTACCACATTCTGAGTATTCCAGATTGC-ATAGCTTTGTGCTAC------TATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAA-ATCAG---------ATTCA----------------CCTAATAG
droSim1 chr2L:5434134-5434256 + CATC---G-----TC------------ACGCCCAC---------------------G---GGTTTTGTACCACATTCAGAGTATTCCAGGTTGC-ATAGCTTTGTGCTAC------TATTGCTGTACGATCTGGGACACTTTTAACATGGTATCAA-ATCTG---------ATTCC----------------CCCAAACG
droSec1 super_5:3718789-3718911 + CATC---G-----TA------------CCGCCCAC---------------------G---GGTTTTGTACCACATTCTGAGTATTCCAGATTGC-ATAGCTTTGTGCTAC------TATTGCTGTACGATCTGGGAGACTTTTAACATGGTATCAA-ATCTG---------ATTCC----------------CCCAAAGG
droYak2 chr2L:13552137-13552259 - CATC---G-----CT------------TCGCCCGC---------------------G---TGTTTTGTACCAGATTCTGAGTATTCCTGATTGC-ATAGCTTTGGCCTTT------GATTGCTATACGGTCTGGGACACTTTTAACGTGGTATCAA-ATCTG---------ATTCA----------------ACCGAAGG
droEre2 scaffold_4929:5729522-5729643 + CAAC---G-----CA------------CCGCCCGC---------------------G---TTTTTTGTGCCAGATTCAGAGTATTCCAGATTGC-ATAGCTTTGGGCTTT------GATTGCTATACGGTCTGGGACACTTTAAACGTGGCATCAA--TCCT---------ATTCA----------------ACTGATGG
droAna3 scaffold_12916:11084824-11084972 + TATC---G-----GCCAATAGGCCAATTAACCCGGACC---A------ATCAATATG---AGTTTTGTGCCAGATTCTGAGTATTCCTGATTGC-ATAGCTCTGTGTTGT------GACTGCTATACGGTCTGGGACACTTCTAACATGGCATCAA-ATCTG---------TGTCAAC--------------GGCAGCAG
dp4 chr4_group4:3182464-3182586 - TGTG---G-----GT------------GTGCGTGT---------------------GTGCGGGTGTGTGCTATATTCTGAGTATTGCCTCCTGTTGTAGTTGTGGAATATTGAAATATCAACTATACGGTTCGGAATCCTCTAAATATGGCAGCC--------------------A----------------CTAAAGAC
droPer1 super_10:2201395-2201525 - TATACACGTAAATGT------------GTGTGGGT---------------------GTGCGGGTGTGTTCTATATTCTGAGTATTGCCTCCTGTTGTAGTTGTGGAATATTGAAATATCAACTATACGGTTCGGAATCCTCTAAATATGGCAGCC--------------------A----------------CTAAAGAC
droWil1 scaffold_180708:8626131-8626297 - TAAG---A-----AT------------TAACTTTGAATTGGAAACGATATTGAAA-T---GAATTTATGCTAAATTCTGAGTATTCCTGATTGC-ATAGTGTGTATTTGA------TACTACTATACGGTCGGGGAAACTTTTAACATGGCCCAAA--TGATAAATGACAGTGACAATGAAAAAGAAAATACCAAAACAG
droVir3 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:14018206-14018306 + TAA-----------------------------------------------------------------GTCATGCTTTGAGTATTCCTTATTGC-ATAGTTTAC--ATAT------AATTACTATACAGTCTGGAGCACTTAAAGTTGGGCATAGACAACCG---------AACAA----------------CTTAGGAG
droGri2 scaffold_15252:3146997-3147109 + TGTT---G-----AT------------TGGCCTTG---------------------G-------TTATGCTAAATTCCAAGTATTCCTTATTGC-ATAGTTTATAAT--T------GAATACTATACAATCTGGCGTTCTTAGAATTTGTCATAAG-AC-------------TTCA----------------CATAACAA

dme-mir-961 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:5641176-5641294 + GTAGTGAGCTC--GT-------T------ATCAAG-----GGCCGAGTTACCTTTGATCACCAGTAACTGAGATT-GT--TTCTGATA---CGGTTTCGTTTTCTGGCAATCAA-AAGAACTTGGACTCGA-CTTGAA----------------------------------------------------------TTCAACTAC
droSim1 chr2L:5434262-5434381 + GTAATGTGCTC--GT-------T------ATCATG-----GGCCGAGTTACCTTTGATCATCAGTAAGTGAGATT-GT--TTCTGATA---CGATTTCGTTTTCTGGCAATCAA-AGGAACTCGA-CTCGA-CTTGAA-TC-------------------------------------------------------TACAACTAC
droSec1 super_5:3718917-3719036 + GTAATGTACTC--TT-------T------ATCAAG-----GCCCGAGTTACCTTTGATCACCAGTAAGTGAGATT-GT--TTCTGATA---CGATTTCGTTTTCTGGCAATCAA-AGGAACTCGA-CTCGA-CTTGAA-TC-------------------------------------------------------TACAACTAC
droYak2 chr2L:13552021-13552135 - GAAAA----TCTAAT---------------TCATG-----GGTCGAGTTACCATTGATCACCGGTTACTGAGGTT-GT--TCCTTCTT---TGGCTTCGTTTTCTGGCGATCAA-AAGAACTCGA-CTCGA-CTCGAA----------------------------------------------------------TCCAACCAA
droEre2 scaffold_4929:5729649-5729755 + TG-----------AT---------------TCATG-----GGTCGAGTTACCATTGATCACCGGTTACTGAGGTT-GT--GCCACATT---CGGCTTCGTTTCCTGGCGATCAA-AAGAACTCGA-CTCGG-CTCGAA----------------------------------------------------------TCCCAGTAC
droAna3 scaffold_12916:11084979-11085099 + ACAAAGGACTA--CAGGAAAGCG------ACT-TA----AGTCCGAGCACTATTTGATCACTGGTTACTGAGGTT-GT--TTTGTCAT---AAGCTTCGTTTTCTGGCGATCAA-ATACGCTCGA-CTT-----TGGG----------------------------------------------------------CCCAACCAC
dp4 chr4_group4:3182338-3182458 - GAGGAGAGCTG--TT---------------TCGCCGGACAGTCAGAGTTTGATTTGATCTCTAGTTACTGGGCTTTGA--TTCGAAATAAGTAGCTTATTATTCTAGTGATTGAAATGAACTCGA-CTCG------AG----------------------------------------------------------TGCCACAAA
droPer1 super_10:2201269-2201389 - GAGGAGAGCTG--TT---------------TCGCCGGACAGTCAGAGTTTGAGTTGATCTCTAGTTACTGGGCTTTGA--TTCGAAATAAGTAGCTTATTATTCTAGTGATTGAAATGAACTCGA-CTCG------AG----------------------------------------------------------TGCCACAAA
droWil1 scaffold_180708:8625990-8626125 - GTGTGAAACT-----------------------TG----AGTTTGAGTTTACATTGATCACTGGTTAGTGAGGTT-CAAAGTCAGACC---CAACTTCGTTATCTGGCGATCAA-ATAAACCTGG-CTTACA----AAAGCTATAATTGCTGAAATGGATACACGT-----------------------T------T---TCTAT
droVir3 scaffold_12963:3615378-3615429 + G---------------------------------------------------------------------------------------------TTTCATTTTTCAGTGAATTA-AACAACTCAA-TTTACACACACA----------------------------------------------------------CACACACAT
droMoj3 scaffold_6500:14018312-14018360 + ATTTAAATGTA--TT---------------CCGGTCTATGGCG--------------------TTTACGG--------------------------TCGTTTTGTCGTA---------------------------------------------------------------------------------------------CTC
droGri2 scaffold_15252:3147112-3147237 + GTTGTTAGCAG--CCACATCTCTGAATTGAAT-TG----GATTCGTT-----------------TTACT--------------------------TTCTTTTATTACTGAAATG-AGTTGTTCAG-TTC-T-TTTAAA-TT-------------------------TCAGTCTACAAACTAAGAGCAGGTTACTTTCATAACACA

dme-mir-962 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:5641283-5641404 + GAATTCA---ACTACTT---CG-----AT-GGGGC-ACTCAGGCTATAAGGTAGAGAAATTGATGCTGTCTACACTAT--------------T----CAGACTTCAGTTTCATTACCTTTCAATTTGTTTGCCCC-CA--TGCAACAGTGA------------------------------------------TA-----G---------------------------------TA
droSim1 chr2L:5434368-5434488 + GAATCT-ACAACTACCT---CG-----AT-GGGGC-GCTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTAT--------------T----CAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CC--TGCAACAGTGA------------------------------------------TA-----------------------------------------
droSec1 super_5:3719023-3719143 + GAATCT-ACAACTACCT---CG-----AT-GGGGC-ATTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTAT--------------T----CAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CA--TGCAACAGTGG------------------------------------------TA-----------------------------------------
droYak2 chr2L:13551914-13552032 - GAATCCA---ACCAACT---TC-----AT-GGGGC-ACACAAGCTATAAGGTAGAGAAATTGTTGTCTTCCACACTAT--------------T----CAGACATCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CA--CGCAACAGTGA------------------------------------------TA-----------------------------------------
droEre2 scaffold_4929:5729744-5729862 + GAATCCC---AGTACCT---CC-----TT-GGGGC-ACTCAAGCTATAAGGTAGAAAAATTGTTGTCTTCCACACTAT--------------T----CGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CA--CGCAACAGTGA------------------------------------------CA-----------------------------------------
droAna3 scaffold_12916:11085088-11085210 + GGGCCCA---ACCACCT---GG-----CCGAGGGC-ACTCAAGCTATAAGGTAGAGAAAATAATGTCTTCGTCTCCAA--------------A----TAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCC-CA--AGCAACAATGA------------------------------------------TA-----A---------------------------------CA
dp4 chr4_group4:3182204-3182349 - GAGTGCCACAAATGCCACATGATGCAAAT-GGAGC-AGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTAT--------------TC---TAGGCATCAATTTTCGTATCTTTTAATTCGTCTGGCGC-CAACAGCAACAGCTA--------------------CAAAACGAGTAACGAGGAGAGATA-----------------------------------------
droPer1 super_10:2201135-2201280 - GAGTGCCACAAATGCCACATGATGCAAAT-GGAGC-AGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTAT--------------TC---TAGGCATCAATTTTCGTATCTTTTAATTCGTCTGCCGC-CAACAGCAACAGCTA--------------------CAAAACGAGTAACGAGGAGAGATA-----------------------------------------
droWil1 scaffold_180708:8625857-8626006 - GGATAC-ACGTTTTCTATTTAA------TAAGGAC-CCTCAAGTTATAAGGTAGAGAAAATGTTGTCTTTATATT----TGTAACAAT-TGTT----AAGACATCACTTTCACTAGCTTTCAATTTGTCTGCTCCACA--TGCAACAACA-------------------TATAAT-------ACAATCAAACAAA-----------------------------------------
droVir3 scaffold_12963:3615418-3615613 + ACACAC-ACA--CATAA---GA-----A--AGGGCGCCTCAAATTATAAGGTAGAGAAATTGTTGTCTACT---TTACATATG--------GT----GAGACATCAAT-TCACTAGCTTTCAATTTGTACGCCCA-AA--TGCAACGGAACCATTTTGGAGGAACATCATAT-TT-------AGAATAAGCCACATGATAGGCAGCACATTTAGCATTTGAATGCCGGACTGCTCA
droMoj3 scaffold_6500:14018360-14018470 + G---------------------------T-AGAGC-GCTCAAGTTATAAGGTAGAGATATTGTTGTCTTTTTGCA----TATAGCACTCTGTTATGAAAGACATCAAT-TCACTAGCTTTCAATTTGTACGCTTA-AA--TGCAGCA-----------------------------------------------------------------------------------------
droGri2 scaffold_15252:3147228-3147335 + TCATAACACA-----CT---CA--------AGAGC-TCTCAGATTATAAGGTAGAGATTTTGTTGTCTTCTATTATA---------------A----AAGACATCAAT-TCACTAGCTTTCAATTTGTATGCTCA-AA--TGCAACGG----------------------------------------------------------------------------------------

dme-mir-963 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:5641975-5642093 + TACAACTAA----------------------TTTTTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTCGA---TCGAAACATCTGTATATACCTTTGTTCCGATT-GGACA-AAAGTG--CGTCTTC--------------TA--GTT
droSim1 chr2L:5435040-5435157 + TACTACTGA----------------------TT-TTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TCGAAACATCTGTATATACCTTTGATCCGGTT-GGACA-AAAGTG--CATCTTC--------------TA--GTG
droSec1 super_5:3719693-3719811 + TACTACTGA----------------------TTTTTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TAGAAACATCTGTATATACCTTTGATCCGGTT-GGACA-AAAGTG--CATCTTC--------------TA--GTG
droYak2 chr2L:13551185-13551307 - CACTACTGC---A------------------TTGTTCTTGGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAAT-GGACG-AAAGAG--CATCTTC--------------AA--GTT
droEre2 scaffold_4929:5730368-5730489 + CAGTGCTGC----------------------TTGTTCTTAGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTGTATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAAT-GGACG-AAAGAG--CATCTTC--------------TA--GTT
droAna3 scaffold_12916:11085426-11085560 + TAATTA--GTTAAAAA---------------GTGTTCTTGATTTAATCTAAAACAAGGTACATATCTGGTTGTTTCCTATATTCAAAGTTTGAAACATCTGTATCTACCTTTGTTTCGATT-AAACT-AAAGAG--CTACT---AAGA---ATACGAGT--GTT
dp4 chr4_group4:3181623-3181668 - AAGAAGAGGA--AAA--------GATAATGT-GA-------------TTAATACAA-------------------------GTGGCTGATTGGA----------------------------------------------------------------------
droPer1 super_10:2200549-2200594 - AAGAAGAGGA--AAA--------GATAATGT-GA-------------TTAATACAA-------------------------GTGGCTGATTGGA----------------------------------------------------------------------
droWil1 scaffold_180708:8625051-8625198 - CATAGTTAAT--TGA--------GTTAATTG-AATTCTAATTCTAGTCTAAAACAAGGTACATATCAGGTTGTTTCGTATATTTGAAGCCTGAAACATCTGTATCTACCTTTGTTTCGAATAGGACT-AAAGAG--TTTTCTTTAAGCCCAACACATTT--GTT
droVir3 scaffold_12963:3616326-3616465 + TGGAGTTAATGTACGGATGGGCA--------TAAACAACAATCTAATCTGAAACAAGGTACATATCAGAGTGTTTCTTAAATTTGATTATTGAAACCTCTGTATATACCTTTCATTGGATT-AAACT-GATAAGCACATGTTT--------------CAAAAGT
droMoj3 scaffold_6500:14019361-14019489 + TGGAGTGCGC--A------------------CTG-AATCGGTCTAATCTAAAACAAGGTACATATCAGAGTGTTTCCCGTATTCGAGTTTTGAAACCTCTGTATATACCTTTCATTAGATT-CAACCGAAAGTC--CATA----AATATT---GA--TA--TAT
droGri2 scaffold_15252:3148184-3148306 + GCAAAATAA-----------------------------CAGTCTAATCCAAAACAAGGTACATATTAGAGCGTTTCCTATCTTTGAGTATTGAAACCTCTGTATATACCTTCA-TTCGATT-CGACT-GATAATCTCATT----AAAATC---ATTTCA--GTT

dme-mir-964 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:5642087-5642216 + TCTAGTTGGTGATAC-----------------------CA-------ATA----A--CATATTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTATGTTT--TTGATGT-TTAAGTTAAAAGCCTCTGTTCTAAGACAATTTGATGATCAAAA------CAGC-----CGGAGAAA
droSim1 chr2L:5435151-5435306 + TCTAGTGGGT-----AAATCCATGTGGTTATGACAAGTCAATC------A----A--AATCTTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTGTGTTT--TTAATGT-TTAAGTTAAAAGCCACTGTTCTAAGACAATTTGATGATCAAAACTTCAACT----TCATTTTGTAA
droSec1 super_5:3719805-3719957 + TCTAGTGGGT-----AAATCCATGTGGTTATGATAAGTCAATC------A----A--AATCTTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTGTGTTT--TTAATGT-TTAAGTTAAAAGCCACTGTTCTAAGACAATTTGATGATCAAAA---C---CACCTG-ACAAAAAAA
droYak2 chr2L:13551054-13551191 - TCAAGTT--------ATATCC-------TATGATCAATCAAT-------G----A--AATCTTGGTCCCACTTGTCTTAGAATAGGGGAGCTTAACTTATGTAT--ATCATGT-ATAAGTTAAGAACCTTTATTCTAAGACAATTCGACTACAAAAT------CAAC-----TGAAAAAC
droEre2 scaffold_4929:5730483-5730617 + TCTAGTTGGTTA----CATCCTTGCGTTAGTGATCAATCAAT-------A----A--CGTTTTGGTCCCACTTGTCTTAGAATAGGGGAGCTTAACTTGTGTGT--GTTATGC-TTAAGTTAAGAGCCTTTATTCTAAGTCAATTCGACTGCCAA-------------------------
droAna3 scaffold_12916:11085546-11085681 + AAGAATACGA-----GTGTTCGCGGGATGAGC-----------------A----TCGAATCAAAGTCAAACTTGTTTTAGAATAGGGGAGCTTAACTTATTGGAG-AGTTGATATTAAGTTAAGATCCCTAATTCTAAGATAATGTGACCATTAATG---C---AAC-----G------T
dp4 chr4_group4:3181498-3181623 - AGGGATC-------C------CC------------------------GTG----C-CAAATAGAGCCAAAACTATCTTAGATCGAAGGTTCCTGGCTTACAGGG--ATTTGAT-GTAAGTTAAGAACCTCCGCTCTAAGCTAGTATGGCTATCAT-----CAACG----G-CCCTGAAAG
droPer1 super_10:2200424-2200549 - AGGGATC-------C------CC------------------------GTG----C-CAAATAGAGCCAAAATTATCTTAGATCGAAGGTTCCTGGCTTACAGGG--ATTTGAT-GTAAGTTAAGAACCTCCGCTCTAAGCTAGTATGGCTATCAT-----CAACG----G-CCCTGAAAG
droWil1 scaffold_180708:8624927-8625071 - TTTAAGCCCA-----ACACATTTGTTGTCTGTGT----CA---------G----T-TGAACAAGGTCAAACTTGTCTTAGAATAGGGGAGCTTAACTTATATTG--TTTTGCT-TAAAGTTAAGAGCCTCAATTCTAAGATAATGCGACTATCACCG---C---AGCA-G-TTC-AGATA
droVir3 scaffold_12963:3616457-3616573 + TTCAAAAGTT----T------TC---------------ATATTG---AAAATAC-----ATTAAGTTTAACTTATCTTAGAATAGGGGAGCTTAACTTT-GT-A--TGAACAT-TTAAGCTAAGAGCCTCAATTCTTAGATAATGCGACTAACAA-------------------------
droMoj3 scaffold_6500:14019483-14019608 + GATATATGATGA------------------TGATTTTCCAATTGTGATGAAATC-----ATTGAGTTCAACTTATCTTAGAATAGGGGAGCTTAACTTAA--TC--TGAACAC-TCAAGCTAAGAGCCTCGATTCTTCGATAATGCGACTAACA--------------------------
droGri2 scaffold_15252:3148300-3148427 + TTCAGTTGATTA----GA-----------------------------AGAGTGC-----ATTATGTCAAACTTATCTTAGAATAGGGGAGCTTAACTTTTATCATATTAGCGC-TCGAGCTAAGATCCTCAATTCTTGGATAAGGCGACTAGCAA--------CT----G-CAGTAAAAA

dme-mir-965 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:243020-243156 - TAATTGTACAATCTGGA-----CA-----ATATTGCTCAACA-TTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTG-TGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGA----------AAAGT-----GTTTTTC
droSim1 chr2L:248245-248381 - TACTTGTACAATCTGGA-----CA-----AAATTGCTCAACA-TTTTGGGGGGTGAAACTGTACGTTATATGTGCCCTTCTG-TGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTACTGCAACGA----------AAAGT-----GGTTTTC
droSec1 super_14:240987-241123 - TACTTGTACAATCTGGA-----CA-----AAATTGCTCAACA-TTTTGGGGGGTGAAACTGTACGTTATATGTGCCCTTCTG-TGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTACTGCAACGA----------AAAGT-----GGTTTTC
droYak2 chr2L:236040-236180 - TAATTGTACAATCACCATCTGACA-----AAATTGCTCAACA-TTTTAGGGGGTTAAACTGTACGTTATATGTGCCCTTT-T-GTAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTGAAGCAACAGCAACAA----------ATAGT-----GTATTTC
droEre2 scaffold_4929:289337-289472 - TACTTGTAGAACCTG-A-----CA-----AAATTGCTCAACA-TTTTAGGGGGTGAAACTGTACGTTATATGTGTCCTTCTG-TAAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTACAGCAACAGCAACAA----------AAAGT-----GAATCTT
droAna3 scaffold_12943:4147952-4148086 + TGGGTTTTCTGG--------------------AAGCTCAACCCTTTTGGGGGGTCAAACTGTACGTTCTATGTGGCAATCTT-AGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTGAAGCAAAGTCAACAAATCTCAACT-AAAGT-----GTT--TT
dp4 chr4_group1:4362148-4362281 + TCATTTCCCCAT--------------------CTGCTCAAAA-ATTTGAGGGGTCAAACTGTACGTTCTATGTGACAATATT-CGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAACTTGATGCAACAGCAACAA-TCGCAACAACAATTCTA-------GC
droPer1 super_5:848159-848292 - TCATTTCCCCAT--------------------CTGCTCAAAA-ATTTGAGGGGTCAAACTGTACGTTCTATGTGACAATATT-CGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAACTTGATGCAACAGCAACAA-TCGCAACAACAATTCTA-------GC
droWil1 scaffold_180764:130106-130233 - TAT--GTAATAAATTAA-----AGAATCAATTCTACACAACA--TTTATGGGGTTAAACTGTACGTTGTATGTGCAAATCTTAAGAAATCCATAAGCGTATAGCTTTTCCCCTTAAAAGTTGATGTTAAATCAACAA---------------------------
droVir3 scaffold_12963:8856389-8856513 + TTAGTGTAGAAAAAGAA-----AAAAACAC--ACACACAAAT-GTTTAGGGGGTCAAACTGTACGTTGTATGTGCAAATG-A-TGAAATTCATAAGCGTATAGCTTTTCCCCTTAAACGTTGATGTGACGACAAC-----------------------------
droMoj3 scaffold_6500:2474475-2474605 - AATGTGAACAAA--------------------ACACTCAAAT-GTTTAGGGGGTCAAACTGTACGTTGTATGTGTAAACA-A-TGAAATCCATAAGCGTATAGCTTTTCCCCTTAAAAGTTGAAGTGGAATCAACAG----------CAATTTAAGCATAGCTA
droGri2 scaffold_15252:12933990-12934109 - G--------------GA-----AA-----ATAACACTCAAAT-GTTTAGGGGGTCAAACTGTACGTTATATGTGTAAATG-A-AGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTGAAGTGATAGCAACCT----------AAAAA-----GTC--TT

dme-mir-966 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:6045612-6045728 - ATT------T---CGC-TCGGCTGTAACCTGATCCG-----------------CTGCT--GTGGGTTGTGGGCTGTG-------TGGCTGTGG-----TATAGGTGCCGCCAGTTGATAACCCCC-AG-----------------------CGTGGGCA-CGGACCCACTGGTCGTCAACCGC
droSim1 chr2L:5834370-5834493 - ATT------T---CGT-TCGGCTGTAACCTGATCCG-----------------CTGCT--GTGGGCTGTGGGCTGTGGGCTGTAAGGCTGTGG-----TATAGGTGCCGCCAGTTGATAACCCCC-AG-----------------------CGTGGGCA-CGGCCCCACTGGTCGTCAACCGC
droSec1 super_5:4116543-4116659 - ATT------T---CGT-TCGGCTGTAACCTGATCCG-----------------CTGCT--GCGGGTTGTGGGCTGTG-------AGGCTGTGG-----TATAGGTGCCGCCAGTTGATAACCCCC-AG-----------------------CGTGGGCA-CGGCCCCACTGGTCGTCAACCGC
droYak2 chr2L:13146709-13146824 + ATT------C---CGC-TCGGCTGTAACCTGATCCG-----------------CTGCT--GTGGGATGTGGGATGTG--------GGCTGTGG-----TATAGGTGCCGCCAGTTGATAACCCCC-AG-----------------------CGTGGGCA-CGGCCCCACTGGTCGTCAACCGC
droEre2 scaffold_4929:11075516-11075624 + ATT--CC-AT---CAT-TCGGCTGTAACCTGATCCC-----------------CTGCT--GTGG----------------------GCTGTGG-----TATAGGTGCCGCCAGTTGATAACCCCC-AG---------C----ACAG-----CGTGGGCA-CGGC-CCACTGGTCGTCAACCGC
droAna3 scaffold_12916:8156171-8156273 + CAT--CCGATC--TGA-TTGGCAGTAACCTGATCCG-----------------CGGTT--GTG-----------------------GTTGTGG-----TGGAGGTGC---TACTTGATAACCCAC-TG-----------------------CGTGGGCA-CTGGCCTTTCGGTTGTCAACGGC
dp4 chr4_group1:223208-223319 + GGA------T---CGG-GTGGCTGTAACCTGATCTGGGAGCGGTGCAGCAGGGCTGCG--GTGG--------------------------AGT-----TGGAGGTGTCGGCTGTTGATAACCCCC-AG-----------------------CGTAGGCA-CTGGT---ATGGTTGTGAACGGC
droPer1 super_1:219437-219548 + GGA------T---CGG-GTGGCTGTAACCTGATCTGGGAGCGGTGCAGCAGGGCTGCT--GTGG--------------------------AGT-----TGGAGGTGTCGGCTGTTGATAACCCCC-AG-----------------------CGTAGGCA-CTGGT---ATGGTTGTCAACGGC
droWil1 scaffold_180708:7887454-7887585 + GGATTGC-AATTGGTTGTGGGCTGTAACCTGATCTGGA----------------AGCT--ATAG-----------------------ATGTGATGATGCGGAGGTGTCGTCAGATGATAACCCCCCAGGGTAGACAGCTTAGACAT-----CGTAGGCA-TTGGC---CTGGTTGTCAACGGC
droVir3 scaffold_12963:3941701-3941794 - ATT------G---GGCGTCTGCTGTAACTTGAAGCG-----------------CTGATCTG-------------------------------------------------TGGTTGATAACCCCC-TG---------C----CAAGGTGCTCGTAGGCAGCTACCGCTCCGGTTGTCAACGGC
droMoj3 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:1454932-1454939 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAACTAG

dme-mir-967 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:12459989-12460115 - GAGAACTGCAGGA------GACTTGGAGAGCAGAGATA-----------------------------CCT--------CTGGAGAAGCG--CGTGACCTGACCCCAGCAGGA-----------GAACCCAACCCGCTT----TTCCACCTA----------------G--------------GTGTCTC--T-----------CTCTCTCTTT--ATCTGTTCCTC------AGCTCG
droSim1 chr2L:12267908-12268042 - GAGAACTGCAGGA------GACTTGGAGAGCAGAGATA-----------------------------CCT--------CCGGAGAAGCG--CGTGACCTGACCCCAGCAGGA-----------GAACCCAACCCGCTT----TTCCGCCTA----------------G--------------GTGTCTC--TCTCTCTC---TCTCACTC--TATCTCAGTTCCTC------AGCTCG
droSec1 super_16:651020-651150 - GAGAACTGCAGGA------GACTTGGAGAGCAGAGATA-----------------------------CCT--------CCGGAGAAGCG--CGTGACCTGACCCCAGCAGGA-----------GAACCCAACCCGCTT----TTCCGCCTA----------------G--------------GTGTCTC--T----CTC---TCTCTCTC--TATCTCAGTTCCTC------AGCTCG
droYak2 chr2L:8897071-8897221 - GAGAACTGCAGGAGACGGAGACTTGGAGAGCAGAGAC---------AGAGATGA-----------TACCT--------CTGGAGAAGCG--CGTGACCTGACCCCAGCA--------------GAACCCAACCCGCTT----TTCCGCCTA----------------G--------------ATGTCTC--TATCTCGC---TCTCCCTC--T--CTCTGTTCCTCTTGCACAGCTCG
droEre2 scaffold_4929:12958952-12959089 + GAGAACTGCAGGA------GACTTGGAGAGCAGAGAT---------------GA-----------TACCT--------CTGGAGAAGCG--CGTGACCTGACCCCAGCAGGA-----------GAACCCAGCCCGCTT----TTCCGCCTA----------------G--------------GTGTCTC--TCACTCTC---TCTCTCTC--TCTCTCTTCTCCTC------AGCCCG
droAna3 scaffold_12916:12931176-12931307 + GAGAAATGCATGA------GATTTTGAGAGGAGAGATA-----------------------------CCT--------C---AGAAGCG--CGTGACCTGACCCCGTCCGTCTGTCCATCTATGAACCCAACCCGCTT----TTC---TCCAAACACCAGAGAGGAG-----------------------------GTCGAGAGTG----------------ACGG------TGTGTG
dp4 chr4_group3:3150562-3150729 - GAGAACTGCATGA------GACTTGGAGAGAAGAGATACCCACAA--GAGGCAGGCAGTGAAGTGGAGTGGAGGGAGC---GAGAAGCG--CGTGACCTGACCCCAAGACC------------GAACCCAACCCGGTT----CTGTTCTCCAGTGTACAGACAGGCA-----------------------------CTC---TGTATGAGTA--TGTACCCTCCTT------CGCTC-
droPer1 super_1:4633245-4633407 - GAGAACTGCATGA------GATTTGGAGAGAAGAGATACCCACAA--GAGACGGT---CCG--TGGAGTGGAGGGAGC---GAGAAGCG--CGTGACCTGACCCCAAGACC------------GAACCCAACCCGGTT----CTGTTCTCCAGTGTACAGACAGGCA-----------------------------CTC---TGTATGAGTA--TGTACCCTCCTT------CGCTC-
droWil1 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13246:1657163-1657301 - AGAGCGAGCAAGC------AGC------------------------------GTT---TTGTGTCTACCTCAGAAAGC---G--AGACG--CG-----TGAACCCAAATGCG-----------AACCTCGACCCGACTCGAATTCCGACTC----------------AACGCAAACGCTCAACTGTCTG--T------C---TGTCTGTC--T--GTCTGTCTGTC------TGCCTG
droMoj3 scaffold_6500:4266220-4266364 + AAGTAGTAGAAGA------AAAAGAAGAAGCAGCGGC------AACAGAAACGTT---TGGTGTCTACCTCAGAAAGC---G--ACACG--CA----TGAACCCCAAAAACG-----------AACCTCGACCCGACC----GACTACC----------------------------------AATTTCTAT------T---TGTCTGACTCT--GTCTCT-GCTG------TGTGTG
droGri2 scaffold_15252:15585528-15585616 + GCAGA--AGAGTA-AAA--GG---AAGAAGCAGAC----------------------------------------------AAAAGACACGCG--TGTTGAACCCGAAAACGAACCCAACTTCAAATTCAACGCAC---------------------------------------------------------------------------------------TTG------CCTCT-

dme-mir-968 antisense_to_intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:13747733-13747854 - TCAAAGA-AA------------AATTGTTGATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCTTTTGATGTACTACTTTAAGAATCTCCAGTTAAAGTCAACACA--TAAG
droSim1 chr2L:13506671-13506792 - TCAAAGAAAA------------AATTGTTCATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAACAT---TAAA
droSec1 super_3:14598-14719 - TCAAAGAAAA------------AATTGTTCATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAACAT---TAAA
droYak2 chr2L:10160053-10160172 - TCAAGGA-AA------------AGTGTTTGATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCA-CAAT-----AAGATCAACCTTTTGATTTACTACTTTAGGAATCTCCAGTCAAAGTCAACAT---TAAT
droEre2 scaffold_4929:11718898-11719017 + TCAAAGA-AA------------AGTTGTTGATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCA-CAAT-----TGAATCGACCGTTTAATGTACTACTTTAAGAATCTCCAGTCAAAGTCAACAA---TAAT
droAna3 scaffold_12943:1815538-1815649 - AAA---------------------T----TATGGCAGTTTCCTTAAGTAGTATCCATTAAAGGGTCGTTAATA-TATT-----CAAAGTGACCGTTTGATGTACTACTTTAGGTAGCTCCATTTAAAGTCGGCTAAAATAAG
dp4 chr4_group1:1722766-1722895 + TTGAATAGTGATTTAGTTCTACAATT----GCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCT-AGCT-----AAAATCGACCTTTTGATGTACTACTTTAAAAAAGCACAGTCAAAGTCAACAGAA--CTG
droPer1 super_5:3483598-3483726 - TTGAATAGTGATTTAGTTCCACAATT----GCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCT-AGCT-----AAAATCGACCTTTTGATGTACTACTTTAAAAAGC-ACAGTCGAAGTCAACAGAA--CTG
droWil1 scaffold_180772:545302-545417 + CTCGTG------------------------A-TGCAGATTCTTTAAGTAGTAACCTTTAAAGGGTCGTTTGTCCAATTCTTTTAAAGTCGATCCTTTAAGTTACTACTTGCAGAATGTGTTTCTGAAATCAACAAA--TATA
droVir3 scaffold_12723:5044036-5044131 - C---------------------AATT----A-TACATGTGCCTTAAGTAGTAACCATTAAGAGGTTGTTGTTA-GATT-----TAAATCCACCTTTTAATGTACTACTTATGACAAATGCATAG--------------CAAA
droMoj3 scaffold_6500:16664499-16664593 + AAA--------------------ATT----A-TGCAAGTATCATAAGTAGTAACCATTAAAAGGTCGTGATT-----T-----GAACTCAACCTTTTAATTTACTACTTGTGATAAATGCATAGAAATGT------------
droGri2 scaffold_15126:8057347-8057450 - TCTA----------------------------------TGCCTTAAGTAGTAACCATTAAAAGGTTGTTTTTGTAAAT-----TATACCGACCTTTTAGTGTACTACTTAAAGTACATTCATTGCAAGTCGACGAATATATA

dme-mir-969 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:18018375-18018498 + TTCGG---------------TGAATCC--CCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA--TGGAC----TACTGC-----AATTCGAAA--T
droSim1 chrU:15519348-15519471 + TTCGG---------------GGAATCC--CCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA--TGGAC----TACTGC-----AATTCAAAA--T
droSec1 super_8:326574-326685 + TTCGA---------------GGAATCC--CCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA--TGGAC----TACT-------------------
droYak2 chrX:16642309-16642432 + TTCGG---------------GGTATCC--CCAAACCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGGGA--TGGTC----TACCGC-----AATTCGAAA--G
droEre2 scaffold_4690:8346009-8346128 + TTTGG---------------GAAGTTC--CCAAATCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA--TGGAT----TACTGC---------CGAAA--G
droAna3 scaffold_13335:1607974-1608101 - TGTGT--TTATTTTTTTT--GGAA-------AATATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAATTT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGG--CAGAT----AATGTC-----AG--CAGTA--T
dp4 chrXL_group3a:1977519-1977620 - TTCCT---------------GGAAGCCATCTAGGAGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAGC--GTATATGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGG------------------------------------
droPer1 super_11:2701270-2701398 + TTCCT---------------GGAAGCCATCTAGGAGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAGC--GTATATGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGGTG--CAGCCAAATCATCGC-----AGCGCATCC--A
droWil1 scaffold_181096:12029390-12029503 + TTTAT-----------------------------ATCCTGTCCTACGCATGAGTTCCACTAAGCAAGTTTTGGGCATAT-TTCAAAAACAAAAACTTGACACGTTGAGCTCGTCTGTGTGA--CAGAA----C-GAACAAC--AAATGAAGA--A
droVir3 scaffold_12928:1264092-1264205 - TTCAA---------------GAGCAGC--TCGCGCTTCTGCCCTACGCACGAGTTCCACTAATCAAGTTTTGAGCGGAT-TCGAAAGTCGAAAACTTGACACGTTGAGCTCGTCCGTGGGG--CGGCA----TTC---------------AA--G
droMoj3 scaffold_6473:13724290-13724417 + TCCTTATCCATAC-------CATATCC--ACATTTGGCTGTCCTACGAGCGAGTTCCACTAATCAAGTTTTGAGT--GT-TCGAAAATCAAAAACTTGACACGTTGAGCTCGTCTGTGTGG--CA--C----AAGTTC-----AA--CAAAAGCA
droGri2 scaffold_15203:8445730-8445869 + TTCGGT-TTGTTCTTTTACAGCAGTGCATCCGGGTGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAGC--GTATTTGAAATCAAAAACTTGACACGTTGAGCTCGTGTGTGCGTTGCGG------AAA-TCAACTTA---CTCAA--A

dme-mir-970 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:12530354-12530478 + AAAGTGCCCAT-------------------AA------TCGAAAGGCATCTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGTAATG--A-TTTG---AATCTATCATAAGACACACGCGGCTATAACCGTT--GTCT--AAGAGCTTCAAA---A-------------------TC------GAT
droSim1 chrX_random:3444234-3444357 + AAAGTGAACGT-------------------AA------TCGAAAGGCATCTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGAATTG--A-TTTG---AATCTATCATAAGACACACGCGGCTATAACCGAT--GTCT--AAATGCTTCAAA-----------------------TC------GAC
droSec1 super_21:285079-285202 + AAAGTGAACGT-------------------AA------TCGAAAGGCATCTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGAATTG--A-TTTG---AATCTATCATAAGACACACGCGGCTATAACCGAT--GTCT--AAATGCTTCAAA---A--------------------T------GAT
droYak2 chrX:6807144-6807273 + ATAGTGCATTT-------------------AA------TCGAAAGGCATCTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGTAATG--A-TTTG---AATCTATCATAAGACACACGCGGCTATAACCGAT--GTCA--C---------ACATGCGACACA--------------CACATTAGAT
droEre2 scaffold_4690:14328958-14329082 - AAAGTGC-CTT-------------------AA------TCGAAAGGCATCCGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGTAATG--A-TTTG---AATCTATCATAAGACACACGCGGCTATAACCGAT--GTCT--AAACGCTTCAAA---G----TG--------------C------AAT
droAna3 scaffold_13117:3438231-3438350 + TTAGTGGA-------------------------------AGAAAGGCATTTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGATATC--G-AAAG---AATCTATCATAAGACACACGCGGCTATAATCGAT--GTCCTTAGAGTCTACAAG---C--------------------T------AAA
dp4 chrXL_group1a:3316403-3316556 + ATCACCC---CAAAAAGTGAGCAGACA-----TCGCG-A--CATGGCATCTGTTGCAGCTAGCGGGTGTTTTATCTGGTAGCTGTACCC--T-TTTG---AATCTATCATAAGACACACGCGGCTATGACCGAT--GCCC--AAACCATCCAAG---A----TTCAATAATTAGTAATC------AAT
droPer1 super_77:191839-191992 - ATCACCC---CAAAAAGTGAGCAGACA-----TCGCG-A--CATGGCATCTGTTGCAGCTAGCGGGTGTTTTATCTGGTAGCTGTACCC--T-TTTG---AATCTATCATAAGACACACGCGGCTATGACCGAT--GCCC--AAACCATCCAAG---A----TTCAATAATTAGTAATC------AAT
droWil1 scaffold_181096:1892772-1892900 + AGAGTGTAC---------------------AATCGTATT--CAGGGCATTTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGCACTA-AAATTTCAATAATCTATCATAAGACACACGCGGCTATGACCGAT--GTCTTT-----CT----------------------TAGCCAAC------AAT
droVir3 scaffold_13042:2658865-2658967 + --------------------------------------------GACGTCTGTTGTAGCCAGCGGATGTTTTATTTGGTAGTTGCGCTT--T-ATTA---AATCTATCATAAGACACACGCGGCTATAACAGTGCCG--TTCA---------ACAAGCAA------------------C------GTC
droMoj3 scaffold_6328:939989-940116 - TAAACCC---CA----GTGATCGACTATGAAA------ACAATTGACGTCTGTTGTAGCCAGCGGATGTTTTATTTGGTAGTTGTATTT--T-ATAA---AGTCTATCATAAGACACACGCGGCTATAACAGAACTG--TTCA---------ATA------------------------------AGC
droGri2 scaffold_15203:5475247-5475378 + AAAGTCTGCCC-------------------AA------AAAATTGACGTCTGTTGTAGCCTGCGTATGTTTTATTTGGTAGTTGTAACTAAA-ATCG---AATCTATCATAAGACACACGCGGCTATCACAGTTCCG--TTCA---------ACAATCAACGTA--------------C-CATT-ACA

dme-mir-971 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:12956090-12956215 + TGCATGTGAGAGAA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--------------------------GTACACAGAAAGAAAACC---
droSim1 zec46h04.g1:44-170 + TGCATGTGAGAGAA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--------------------------GTACACAGAAAGAAAACC---
droSec1 super_21:701218-701343 + TGCATGTGAGAGAA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--------------------------GTACACAGAAAGAAAACC---
droYak2 chrX:7229770-7229895 + TGCATGTGAGAGAA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--------------------------GTACACAGAAAGAAAAAC---
droEre2 scaffold_4690:13914734-13914859 - TGCATGTGAGAGAA--------TTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT-TT------CTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--------------------------GTACACAGAAAGAAAACC---
droAna3 scaffold_13117:3891784-3891909 + TGCATGTGAGAAAA--------TTCCGTGGCTGGCAT--CGTTCACTGTAAATTGTAACCATCAAAGCGTT-TTTT----ATCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCTG--------------------------GAGCACATATTAAAAA-----
dp4 chrXL_group3a:1391638-1391748 - AGCATGTGAGAGAGCGGCTCCTTTCCCTGGACCCCAT--CGCTCGCTGTAAATTGTAATGGCCAAAGCTTT-TTTG----TTGGTAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTG------------------------------------------------------
droPer1 super_52:413307-413417 + AGCATGTGAGAGAGCGGCTCCTTTCCCTGGACCCCAT--CGCTCGCTGTAAATTGTAATGGCCAAAGCTTT-TTTG----TTGGTAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTG------------------------------------------------------
droWil1 scaffold_181096:6691507-6691601 - AC-----------A--------TTAAACGGCCCAATA--CGCTCGCTGTAAATTGTAGCAATCAAAGCGTTGCCTTTTGCCTC---ACAGCTTGGTGTTACTTCTTACAGTGAGTGTG------------------------------------------------------
droVir3 scaffold_12928:4279754-4279849 - ------------------------------------------CCGCTGTAAAATGTAATCATCAGAGCGTC-CT------CTC--AACCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCCC--------------------------AAGGTCCGACCGTAAATCATA
droMoj3 scaffold_6328:350121-350240 + ---------------------------------------CGACCGCTGTAAATTGTAATCATCAAAGCGTC-TG------CTA--AATCGCTTGGTGTTACTTCTTACAGTGAGCGCGGCGCTCGAAACTACAGTGAAACTAGCATAAAGTGAACAAGGAAAGGAAA-----
droGri2 scaffold_14853:994421-994540 - CACG--------AA--------CT---TGAATGACGTCACGCCCGCTGTAATATGTAATCATCAAAGCGTG-TATT----TT---ACTCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCCACAC-----------------------GTCCAGCGGAGGAGAGTG---

dme-mir-972 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:19445170-19445290 + TGCAAATAGCTAAAGAGAATGATAGGGAA----ATTGCT--AAATATTTTTTTTGTATAAATAACTTTT---AACTTTTGTACAATA------CG-AATATTTAGGCATTTCTCAAATCA------------------------------AA------------------------GATTTGCAAGCC-----------------AAA
droSim1 chrX:15010925-15011057 + ATAAAAAAGCTGAAGAGAATGATAGTG-----AATTGCT--AAATATTTTCTTTGTATAAATGACTTTT---AACATTTGTACAATA------TT-AATATTTAAACATTTCTCGAATCA------------------------------AAGTA-----------TGCCACATCAGCTTTGCAAGCC-----------------AAA
droSec1 super_8:1727594-1727726 + ATAAAAAAGCTGAAAAGAATGATAGTG-----AATTGCT--AAATATTTTCTTTGTATAAATAACTTTT---AATATTTGTACAATA------TT-AATATTTAAACATTTCTCGAATCA------------------------------AAGTA-----------TGCGACATCAGCTTTGCAAGCC-----------------AAA
droYak2 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:9681872-9682038 + -TGAAATAGCTGAATATAATGCTAGTGAA----ATTGTT--AAATATTTACTTTGTATAAATGACCTTCATAAACATTTATACAATT------TCAAATATTTTGCCATTTCTCAATCCAATTCAATTTTGCCACACAGAAGTGTCCAAAAAGTA-----------TGCTACATCATATTTGCAATCC-----------------AGA
droAna3 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp4 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 scaffold_181096:7946002-7946145 + CTTAAATATTCGAAACGTGTACTAAGA-----TTCTACT--TCTTGCT------------------------AGCTTATTTTG--TAAACTAATG-AATAATTAAATGACAATGAAAACG------------------------------AAGTAAATTAGTTAATTAAGACAGCTGCTTAACATATAAAATAATTGAAAATATTCAA
droVir3 scaffold_13042:918660-918775 - CTGAAAGAACTATAGATATTATTAATAATAGGAACTGCTTCAGATATTTTGTTTGCAGT-----GTCTT---AGCTTTTGTTT--TA------TG-ATGTTTTATATATTCCGAATATTA------------------------------AA------------------------GCTTCAAA---------------------AAA
droMoj3 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

dme-mir-973 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:19445546-19445676 + AATATACTTC----ACTTTA-CCGTCGTCGACTTTTCGTGGTTGGTGGTTGAACTTCGATTTTAAG-TA--TTT--------AAATAAAATGAAATCTGTTCATTCTCCGACACAAGAAGTTCACGCAAAGGA------------------------GCTGCAGCTGCGAA
droSim1 chrX:15011303-15011407 + CG-------------------------TATACTTTTCCGGGTTGGTGGTTGAACTTCGATTTTAAG-CA--TTT--------AAATAAGA-TAAATCTGTTCATTCTTCGACCCAAAAAGTTCACGTGAAGAA------------------------GCAGCG------AA
droSec1 super_8:1727974-1728085 + AC------------------TTCAACGTATACTTTTCGGGGTTGGTGGTTGAACTTCGATTTTAGG-TA--TTT--------AAATAAGA-TAAATCTGTTCATTCTTCGACCCAAAAAGTTCACGTGAAGAA------------------------GCAGCG------AG
droYak2 Unknown GTTATAA--G----AT----TTTAACGTCGACTTTTCGTGGTTGGTGGCTGAACTTAGATTTTGAG-TA--TAC--------AAATAGAA-CAAATCTGTTCATTCCTCGACACAACAAGTTGACGTAAAGGA------------------------GCAGCA------AA
droEre2 scaffold_4690:9682299-9682417 + ACTATAC--C----AT----TTTAACGTCGACTTTTCGTGGTTGGTGGCTGAACTTAGATTTTGAG-TA--TTC--------AAATAAAA-TAAATCTGTTCATTCCTCGACACAAGAAGTTGACGTGCAGGA------------------------GCGGCA------AA
droAna3 scaffold_13417:2478622-2478750 - -----------------------GACACCGACTCCTCGTGTTTGGCGATTGAACCTGGATTTTTAA-TT--TTC--------GAGTACGA-GAAATCTGTTCATTCCTCGACACTAGTAGTTGGCGCGACA-C------TCAGCGCACCAAACATGAACCGCGGCTCAAAT
dp4 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 scaffold_181096:7946449-7946592 + AAAATATATCGGGAATATTG-TCGACATGGCCTTTTCGTGTTTGGTGATTGAACTTGGATTTTGTTCTATATACATATATAAAAAT-ATG-TAAATCTGTTCATTCCTCGACACTAGAAGTTCATGTCAATAACTTCATTT----------------CCTGCA--------
droVir3 scaffold_13042:918337-918453 - AGAACAGTTA----AAATCATCGGACATTCACTTTTCGTGTTCGATGTTTGAACTTGGATTTTTTT-TA--TAT--------A-----CA-CAAATCTGTTCATTCCTCGACACTAGAAGTTTGCGTCAATAA------------------------GCTGC---------
droMoj3 scaffold_6328:2909116-2909204 - ----------------------CGGCTTTCACTTTTCGTGTTCGATGTTTGAACTTGGATTTTTAA-AA--TAT--------GAA---AA-GAAATCTGTTCATTCCTCGACACTAAGAGTTTAGG---------------------------------------------
droGri2 scaffold_15081:2051526-2051596 - -----------------------GACATTTACTTTTTGTGTTGGGTGATTC---------------------------------------------TGATTCACTTTTCGACACATCAAGTTCACCTCAATAA------------------------ACTGCA--------

dme-mir-974 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:19445696-19445826 + AG----GTCC-AGGTAAGCTCAA-TTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTG--TTTCCAA-GAGCAAATATAACTTCATTGGAA-GCTAAGTGGATTTGCCCA-AAT-------CAGCTTGGTATTTAT
droSim1 chrX:15011423-15011546 + GT----A---------AACTCAA-TTGTCACTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTGGTATTTGCG--TTTCCAA-GAACAAATATAACTTCTTTGAAA-GCTAGGTGGATTTGCCCA-AGT-------CACCTTGGTATTTAT
droSec1 super_8:1728102-1728227 + AG----G-------TAAACTCGA-TTGTCACTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGCG--TTTCCAA-GAACAAATATAACTTCTTTGAAA-GCTAGGTGGATTTGCCCA-AGT-------CTCCTTGGTATTTAT
droYak2 Unknown GA----AAAC-AGAACCACTGAC-TTAGCACTGGTCATGGCCTCCAAGCGAGCAAAGAAGTAGTATTTGTG--TTCCAAA-AGTCAAATATAACTTTTTTGGAA-GCTACGGGGACTTGTCCA-AGA-------CAGC-----------
droEre2 scaffold_4690:9682437-9682562 + GA----AAAC-AGAACCACTAAC-TCAGCACTGGGCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTG--TTCCAAA-AGTCAAATATAACTTTTTTGGAA-GCTACGGGGATTTGCCCA-AGC-------CAACTTGCTG-----
droAna3 scaffold_13417:2478487-2478598 - GG----TTGC-A---ATCCTGGC-TTGGGGTAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTGCTTTTAATGGTCAAATATAACTTTTTTGGAA-GCTACGAGGAGTTGTCC---------------------------
dp4 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------
droPer1 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 scaffold_181096:7946609-7946719 + AT-----------------TCATTTTTCCAATGGCCATATCCTCTAAGCGAGCAAGAAAGTGGTATTTGTC--TTTGGAA-ATTCAAATATAACTTTTTTGGAA-GCTACAAGGCAATGTCCACAAT-------CAAC-----------
droVir3 scaffold_13042:917533-917679 - ATCCGAATATGAGATTTACCA-ATTATTAACTGGGCATTCCCTCTGAGCGAGCAGAGAAGTATTATTTGCGTGAATCTGA-TATCAAATAAGACTTTTTTGGTTCGCTATGAGGTATTGTTCA-TAAATAAACACGTCTGCCTATATAC
droMoj3 scaffold_6328:2908489-2908614 - TC----A---------------ATCAGACGCTGGGCATTCCCTCTGAGCGAGCAGAGAAGTATTTT-TGCGTGCATCTGA-TATCAAATAAAACTTTTTTGGTT-GCTGCGAGGTATTGTTGA-AATGTAAACGTTGCTCGCTCTCTAC
droGri2 scaffold_15081:2051206-2051247 - CA----------------------------AAGGACATCTTCTGTAAGCGAGCAAAAATATAATATTTGT-------------------------------------------------------------------------------

dme-mir-975 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:19452771-19452891 + ATCCAA--------------TTGGCAATATTGAATTTTTGATTTTAAACACTTCCTACATCCTGTATGTGT-TTTG----------------------------CATCCGGTACAGATGTGGGAGTCGTTTGCACTCAGAGATTTCACAGAATTCGAGGATC-GA
droSim1 chrX:15018379-15018489 + -------------------------AATATTGAGTTTTTGATTTTAAACACTGCCTACATCCTGTATGTGT-TTTG----------------------------CATCCGATACAGTTGTAGGAGTCGTTTGCAGTCAGAGATTTCACAGACTGCGAGGATC-GA
droSec1 super_8:1735110-1735229 + A-AAA--------------TTAATTAATATTGAGTTTTTGATTTTAAACACTCCCTACATCCTGTATGTGT-TTTG----------------------------CATCCGATACAGTTGTAGGAGTCGTTTGCAGTCAGAGATTTCACAGACTGCGAGGATC-GC
droYak2 chrX:11885955-11886071 - ATCCA------------------GCAATATTGAATTCTTGACTTTAAACACTGCCTACATACTGTATGTGT-TTTG----------------------------CACCCGATACAGATGTGGGGGTCGTTTGCAATCAGAGATTCCGCAGGCTACGAGGATC-GG
droEre2 scaffold_4690:9688756-9688876 + -TCCA--------------ACCATCAACATTGAATTCTTGACTTTAAACACTTCCTACATCCTGTATGTGT-TTTG----------------------------CGCCCTATACAGATGTGGGGGTCGTTTGCACTCAGGGATTCCACAGGCTGCAAGGATC-GG
droAna3 scaffold_13417:2467701-2467813 - GTCCAAG------------CCAGTCGACAATGAATATTTGATTTTAAACACTACCTACATCCAGTATGTTACTTGA----------------------------CTCCCAATACGGATGTGGAGGGCGTTTACACTCAGAGATTCTGGAG-----------C-CA
dp4 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 scaffold_181096:7956608-7956722 + GTTTTGTAGATGTGTTGGAATC-ACGACATTCAACTGTTATGTTTACATATGTCTAACATTCTGT-----------------TATAGTATAACAGTGTGTCTTGCG----------------------TTCCTACTCAACAC-TCAACAT-TCGC--------AA
droVir3 scaffold_13042:906902-907003 - ----------------------------------TCTTTGATTTTAGATACTCCCTATATCCAGTATGTGT-GCCACTT-ATTGAAATACA-----------------------AGATGTATGGGGTGTCTGCAATCACAAACCACGTAG-CCGCAA---TCAGC
droMoj3 scaffold_6328:2901122-2901224 - ----------------------------------TCTTTGATTGTAGATACTCCCTATATCCCGTATGTGC-GATACTTTGATAAAATACA-----------------------AGATGTATGGGGTGTCTGCAATCACAAACCACATAG-CCGCAA---TCAAA
droGri2 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------

dme-mir-976 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:19452913-19453039 + AAC------------------G-----GCGGTG-GTGGGCAT--------------------------CG-----CCATGCAGTGCCGCGGCATTGGTGAGGC-CATCTCCAATGG-ATTAGTTCT---CA------ACATTGGATTAGTTATCATCAATGCCGGTGCACTGCACC--TAACAACATC---------------GCGCCGG
droSim1 chrX:15018511-15018617 + -----------------------------------------------------------------------------ATGCAGTGTCGTGGCATTGGTGAGGA-CATCTCCAATGG-ATTGGTTCT---CA------TCATTGGATTAGTTATCATCAATGCCGGTGCACTGCACTGCTGTCAACTTC---------------GCGCAAT
droSec1 super_8:1735239-1735349 + TCC------------------G------------------------------------------------------CATGCAGTGCCGTGGCATTGGTGAGGA-CATCTCCAATGG-CTTAGTTCT---CA------TCATTGGATTAGTTATCATCAATGCCGGTGCACTGCAGC--TGTCAACTTC---------------GCGCAAT
droYak2 chrX:11885798-11885920 - AGA------------------G--------GTGAGTGAGAAT--------------------------CG------CATGCAGTGCCACGACATTGGTGAGGG-CATCTCCAATGG-----GGACCCGGCA------TCATTGGATTAGTTCTCATTAATGCCGGAGCACTGCACC--TACCAACTTC---------------GCACGGT
droEre2 scaffold_4690:9688892-9689017 + TCC------------------A-----GAGGTGTGCCAGAAT--------------------------CG------CATGCAGTGCCTCGACATTGGTGAGGG-CATCTCCAATGG--GGAGCCAG---CA------TCATTGGATTAGTTCTCATTAATGCCGGAGCATGGCACC--TACGAACTGA---------------GCATTTG
droAna3 scaffold_13417:2467561-2467679 - GCT------------------A-----CCGATG-------------------------------------CTCCCCGAAGGAGCGCCTCGACATTGGTGAGTT-CATCTCCAATGG--TCAGTAGC---CC------GCATTGGATTAGTTCTCATTGATGGCGAAGCGAGT--CC--TACCCCCACA---------------CCAGCGA
dp4 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 scaffold_181096:7956743-7956912 + CTCTCCCCTTCCTTCTTACACA-----GGATTATG-TAGGAT--------------------------TA------T-GGCAACACCTCGATATTGGTGAGTTCCAGCTCCAATGTTATTGGAGCCCAACATTGAACACATTGGATTAGTTCTCATCGATGGCGAAGTGTTT-GTGAGCAATATCGTATATTGTGCGTGCAGTGTATTGT
droVir3 scaffold_13042:906708-906880 - ATC------------------GTTATCGTTATC-GTTATCGTTATCAGAATTAATTATCGTTGAAGTGCGTTCTTTGGTGCAGCCCCTCGCGATTGATGATAG-CATCTCCAATGA-----GCATA---TC------ACATTGGATTAGTTCTCATCGATGCCGATGCGCTGTACCAGCAACAACAAC---AGGAATAGCAACGGAAACA
droMoj3 scaffold_6328:2900970-2901098 - TAT------------------C-----GTTATC-GCTAGCGA--------------------------CGCTTC-GGGTGCAGCCCCTCGCGATTGATGAAAG-CATCTCCAATGA-----GTATT---TC------GCATTGGATTAGTTCTCATCGATGTCGATGCGCTGTATCAGCAACAACAAC---------------AACATGA
droGri2 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

dme-mir-977 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:19453040-19453168 + GGA-------AT--------------------------------------CCCAACACAACGA-ATCAACAA-----------------------A-----------------CAAGGTATGCTTTAGATAACTCGAATATCACATCTTC---------A--GTGTTCGAAATCTGATGAGATA-TTCACGTTGTCTAAATCATGTTTTGTACGAAAC--------------------TACAACTAA
droSim1 chrX:15018618-15018753 + GGA-------AT--------------------------------------ACCAACTCCGGAGTGCC-------------------------GAAAATGCA----TCC-----CAAGGTATGGTTTAGATAACTCGAATATCACATTTTC---------A--GTGTTCGATATCTGATGAGATA-TTCACGTTGTCTAAACCATGGTTTGTTTTTGAA--------------------AACTACTCA
droSec1 super_8:1735350-1735483 + GGA-------AT--------------------------------------ACCAACTCCGGAGTGCC-------------------------GAAAATTCA----TCC-----CAAGGTATGGTTTAGATAACTCGAATATCACATCTTC---------A--GTGTTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGGTTTGTTTGAAA----------------------ACTACTCA
droYak2 chrX:11885613-11885797 - TCCTATTCCTATTCC----------------GATTCC-GATTCGGAATCAACCAAGTGCGGACAGCT-------------------------CAGAGTTCA----CCC-----CAAGGTATGGCCTAGATAACACGGGTATCACATCTTT---------AT-GCATTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGTTTTGTAAGGAAATGCACTCTGCTCATCAGTTAAACTACTAA
droEre2 scaffold_4690:9689018-9689184 + GGG-------ATCGG----------------GATCCCGGATTCGG-----------------A-GTCAACAAACTCTTGTCAAACAAACGAGCAGAATTCA----ACC-----CAAGGTATGGCCTAGATAACTCGGGTATCACATCTTT---------AT-GCATTCGATATCTGGTGAGATAATTCACGTTGTCTAAACCATGTTTTGTAAGAAAT--------------------AACGCCTTA
droAna3 scaffold_13417:2467442-2467560 - GGC-------ACACG----------------CGTACC---------------------------------------------------------------------GC-----CGAGGTTCGGCCTCGATCACGAGAACGTCGCATCTTA---------GT-TACATTTCCATATGATGAGATA-TTCACGTCGTCGAAACCGTGTCTCGGCTTGGCC--------------------ACCAATCGC
dp4 Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1 Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 scaffold_181096:7956913-7957043 + GAT-------GT--------------------------------------GACACCGTGGACG-ATCAACAA-----------------------AATTCA---------------TATACAATTTCAATAACGTAGATATCGCATCGTTTTTTTTTACC--ATATTTGATAAGAGATGAGATA-TTCACGTTGTTGAAGTTGTGAAGGAATTAA-----------------------------AAA
droVir3 scaffold_13042:906546-906707 - GGA-------AC--------------------------------------CGGAACAGAAACA-GGAAAAAG-----------------------AAATTGTGTTCCCCCTGGCCCAGCCCAGTTGCGATTGCGCGGACATCTCATCGTA---------TAAACATTCGATAACCAACGAGATA-TTCACGTTATCGAGACTGAGACGTCGGCAAAG------ACTGCAAGATTGTGCGACAAGTGA
droMoj3 scaffold_6328:2900856-2900969 - GTT-------AAACGAAATGAACCAGTTCGTTGTTC--------------------------------------------------------------------------TGGCCCAGCCCGGTTCCGATTGCGCGGACATCTCATCGTC---------TGACCATTCGATAACCGATGAGATA-TTCACGTTATCGAGACTGCG------------------------------------------
droGri2 Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

dme-mir-978 antisense_to_intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:19455254-19455375 + AAGTACAATA---TCTTGGT--------TGGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTTGC-------AA-TCGAAAATCGTGTCCAGTGCCGTAAATTGCAGTTGTGTGAA--CGCAAACGGCAGCAG--------------------CGAAGG
droSim1 chrX_random:5079001-5079113 + AAGTA------------GAT--------TGGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTTGT-------GG-TCGAGAATCGTGTCCAGTGCCGTATATTGCAGTTGTGTGGA--CGCAAACGGCAGCAG--------------------CGAAGG
droSec1 super_8:1737859-1737971 + AAGTA------------GAT--------TGGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTTGT-------AG-TCGAGAATCGTGTCCAGTCCCGTAAATTGCAGTTGTGTGGA--CGCAAACGGCAGCAG--------------------CGAAGG
droYak2 chrX:11883747-11883862 - AAGTGCATCC------AGGT--------GGGCGGCACAGCCAGCACTCTACGCCGCTGGCTTACGTTGT-------AC-TCGGAAATCGTGTCCAGTGCCGTTGATTGCAGTTGTGTGGA--CGCAAAGGGCAGCG-----------------------GAGA
droEre2 scaffold_4690:9691187-9691301 + AAGTGCATCC-------AGT--------GGGCGGCACAACCAGCATTCTACGCCGCTGGCTTACGTTGT-------AC-TCGAAAATCGTGTCCAGTGCCGTTGATTGCAATTGTGTGGA--CGCAAAGGGCAGCG-----------------------GAGG
droAna3 scaffold_13417:2460507-2460635 - GAGTGCGGACAGGGCAAGCT--------CGGCGGCACAGACAGCATTCGACGCTGCTGGCTTACGTGGT-------GG-TTGATATCCGTGTCCAGTGACGTTGATTGCAGTTGTGTAGA--CGCGAATTACAGCGACCG------A----------TAGTTG
dp4 Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1 super_14:1991206-1991216 - AACAAC--------------------------------------------------------------------------------------------------------------------------------------------------------AACTA
droWil1 scaffold_181096:7961115-7961220 + -------------------T--------TGGCAACACAGGCAGCATTCGACGACGCTGGCTTACGTTAAAAAC---AA-ACGATATCCGTGTCCAGTGACGTTGATTGCAGTTGTGTA------CAATGATTAGCGG--------------------CGATTT
droVir3 scaffold_13042:902659-902773 - ACA-----------------------------GGCACA-GCCGTACTCTACGCTTTTGGGA-ACGAG--CTCTTTGAC----GCACTCGGTTCCATTGCCGTTGAGTAGAGCTGTCCTGA--TGCATATCTCAACG---T------ATTGATTCAAACAAGAA
droMoj3 scaffold_6328:2897048-2897148 - CG------------------------------GGTACA-GCCGTACTCTACGCTTTTGGGA-ACGAG--CAATCATACAAAGCCACTCGGTTCCATAGCCGTTGAGTAGAGCTGCCCCCGTTTGCACATCACAAC----------------------------
droGri2 scaffold_15081:2040911-2041055 - AAGTACGGCA---GTTCGATAACCAACAC--AGGTCCA-GCCGTATTCAGCGCTTTTGGAA-GTAAG--GAACATGAT----TCTCCTAGTTTCAATGCCGCTGAGTAAAGCTGTCCCAA--TGCAAATCGCAACG---TAACTGAATCGAATCAATCAATAA

dme-mir-979 antisense_to_3pUTR Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:19455855-19455979 + TTAATCAC---TGGAA-----------------------CATACATGTGAG-----------GATGTCACAAATACA--------------CTGA---ATTTGGGGGGAATTCT--------TATGTATATAC-AAATTCTTCCCGAACTCAGGCTAATTTTGTG---------------GCA---------------------------TCCGTATACACAAAA----------------------------------GT------ATA
droSim1 chrX_random:5079602-5079664 + TTAATATA---C--------------------------------------------------------------------------------------------------------------------------AAATTCTTCACGAATTCAGGCTAATTTTGTA---------------GGA---------------------------GCCGTATATACAAAA----------------------------------GT------ATA
droSec1 super_8:1738459-1738521 + TTAATATA---C--------------------------------------------------------------------------------------------------------------------------AAAATCTTCACGAATTCAGGCTACTTTTGTA---------------GGA---------------------------ACCGTATATACAAAA----------------------------------GT------ATA
droYak2 chrX:11883259-11883281 - TTAATGGC---TGGGA-----------------------AATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT------AAA
droEre2 scaffold_4690:9691773-9691867 + TTAATCGT---TGGCA-----------------------AATACGTATGG------------GGTGCCACA------CAAATCGATTAGCTCTGA---ATTCGGGCGGAATTCTGAAGCACGCAT-----------------------------CCACTTTTGTA---------------GCA---------------------------TCC---------------------------------------------------------
droAna3 scaffold_13417:2459297-2459411 - TAAGTTAC---TTATA-----------------------ATTAAATTTAAA-----------TATTTCGAAATAAAA--------------CTATAAAATAATTGTCTTATTTCAG------------------AAAATATGTACATATTTATACCAATCTT--------------------------------------------------------------------------------TACATATTTCAATAAAAAT------ATA
dp4 chrXL_group1e:12509670-12509797 - TTAAGCAT---TTTAATTTTTGTATTTTTCAAGATCGAAAATATTTATGC-GCGTAAATTTAAGAGTAAGTCCTTA-GTAAGTAAGGAAG-------------------AAC------------------------------------TACGCTCTGGATTTGAT---------------ATA---------------------------CTCGTGAAGTTAAAA----------------------------------CA------ATA
droPer1 super_14:1989251-1989367 - CTAAGTCA---TCGTG-----------------------CGCATCTGTTGG-----------GGAGTAAAAACTAAA--------------A-------TTAGAGTGGAAACTC--------TATTTTGAGTTGAATTTTTCCATGAAAATCTGCTACATTTTGG---------------G-T-----------------------------------------------------------------TTTAAATTTGTAT------TTT
droWil1 scaffold_181096:7961895-7962008 + TAGATTATGATTAGAATAAGCACACACAACACACGCACA-----------------------------------------------------------------------CACACACACACACATCTATATAT-AAATCAACCAAGAAAACA---CAATATCGAA---------------GAAA--------------------------TTAGAAAGTATATAT----------------------------------AT------ATA
droVir3 scaffold_13042:902091-902097 - TCAATCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6328:2896306-2896380 - ATGAGAAA---GGG----------------------------------------------------CTATA------GAAATTGATGACG---------------------------------------------ATATAATCCAAAACTAAGATTACAATAATA---------------ATA---------------------------ATaataaac-----------------------------------------a------aaa
droGri2 scaffold_15081:2040284-2040418 - TTGTAATT---TAAGA--------------------------------------------------------------------------------------------------------------------------TGAAGATGAAGACA----------ATAATAATAATAGTGATAGGAGTTGAAGAGCTTAAATGTAAACTGATAATTGTATATACAAAGTTGAAAATGTCATTCTCTGGTTATTGGATTAAAATGAGGACACTT

dme-mir-980 antisense_to_intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:174190-174317 - GCGTG-------------------TGAAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCCTGGCTAGCTTACTCCT--TTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCGAC-----------TCCCGAATA---ATA
droSim1 chrX:118257-118384 - GCGTG-------------------TGAAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTCACTACT--TTTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAAC-----------TGCCAAATA---ATA
droSec1 super_10:47183-47310 - GCGTG-------------------TGAAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTCACTACT--TTTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAAC-----------TGCCAAATA---ATA
droYak2 chrX:117050-117182 - GCGTG-------------------TGAGATGTGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTTAGCTTT--TTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCGACTCGA------CTGCCAAATG---ATA
droEre2 scaffold_4644:121637-121764 - GCGTG-------------------TGAAATGTGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTTACCTCT--TTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGTAGTTCGAC-----------TGCAAAATT---ATA
droAna3 scaffold_13117:4815182-4815314 - AAGTGATAAGAAATGTCC-----------TAGGAAGTAATTTGTATGTCAGCCTCTCATTTGGCCTGCCTAGCTGACTTT---AAATTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGATTCAAC-----------TTGC--AGA---ATA
dp4 chrXL_group1e:4097625-4097758 - CCGCC-------------------ACAAAAGAGAAACAAATTGAATGTGAGTCTCTCACATGGCTGGTCTAGCTGACTTG---TTTCTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTTTTTGTAGCCCAACGTAA-------AGCCGAAAATCGTAA
droPer1 super_17:1039174-1039307 - CCGCC-------------------ACAAAAGAGAAACAAATTGTATGTGAGTCTCTCACATGGCTGGTCTAGCTGACTTG---TTTCTAATACTGCTAGCTGCCTTGTGAAGGGCTTACGTGTTTTTGTAGCCCAACGTAA-------AGCCGAAAATCGTAA
droWil1 scaffold_181096:8731771-8731891 + ---------------------------------------ATTGTGTGTGAGTCTTTCACTGGGCGTGCTTAGCTAGAAATTTATTTACCATATTGCTAGCTGCCTTGTGAAGTGCTTACGTGTAATTGTTGAACAACAAAAAAAAATCAGAAAAAGC---ATA
droVir3 scaffold_10277:1011-1148 - GGGCTATAAAATTTGGACCAAATGTGA------GAGCGCATTGCATGTGAGTCCCTCATTTGGCAGGTTTAGCTGCTTTT---AATACGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGTTAAACAAC-----------T--TAAACA---ACA
droMoj3 scaffold_6473:11075547-11075659 + TTATT-------------------T---ATATGAACCGCATTGCATGTGAGTCCCTCATTTGGTGCGCTTAGCTGTTTTTC--AATTTGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGTTTGTAATACAAC--------------------------
droGri2 scaffold_14853:6339037-6339158 + GATTA-------------------TGAG------AGCGCATTACATGTGAGTCCCTCATTTGGCGGACTTAGCTGCTTTTC--AATTTGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGTAAATCAAC-----------TGAGGAAAA---ATA

dme-mir-981 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:1682879-1683005 - A-CTGCAACTTAGGAG-------------------AAACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAAA--------TTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCAAGGCCG
droSim1 chrX_random:1085378-1085505 - AACTGCAACTTAGGAT-------------------AAACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAAA--------TTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCAAGGCCA
droSec1 super_10:1477754-1477881 - AACTCCAACTTAGGAT-------------------AAACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAAA--------TTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCAAGGCCA
droYak2 chrX:1528063-1528198 - A------ACTTAAGAGAGAGACCAA-----GTGCAAAGCATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAAAAAA--------TTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCAAGGCCG
droEre2 scaffold_4644:1660954-1661093 - A-CTGCAACTTAAGAGGG-CACCAA-----CTGCAAAGCATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAAA--------TTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCTAGGCCG
droAna3 scaffold_12929:1586917-1587049 + A-TTATAGTTTTA-----AGA---ACTGTGTTTCATAAAGTCCTCACTGAAGCCGGGTTTCGTTAACAGCGGGCTGTCATTTCGAA--------ATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAATAACAACGTTTAA-----
dp4 chrXL_group1a:4258914-4259036 - A-CGAATATCTA-------------------TGCGAAAAATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAATAA--------ATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAGAAACAAC----AAATGCA
droPer1 super_11:835055-835162 - T---------G-------------------ATGCGAAAAATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAATAA--------ATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAGAAACAAC-----------
droWil1 scaffold_181096:4683233-4683341 + ---------------------------------------ATCCACACTGAAATCGGGTTTCGCTAGCAGCGGACTGTCATGATAAATGTGAAAAACAAACAAGTTCGTTGTCGACGAAACCTGCATCATGTGTCGGACAAACAGCTCT--------
droVir3 scaffold_12942:51501-51599 + A-----------------------------------ACAATCTACATTGAACTCAGATTTCGTCAGCAGCGGGCTGTGATGATTA----------TGAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAGTGGCAAC-----------
droMoj3 scaffold_6328:4397474-4397588 + --CTGTGGATAAAAAT-------------------AGTAATCTACATTGAACTCAGGTTTCGTTAGCAACGGGCTGTGATGATTAA--------AAGAACAAGTTCGTTGTCGACGAAACCTGCATGCTATGT-GGAGAGGCAAC-----------
droGri2 scaffold_14853:795296-795391 + ----------------------------------------TCCACATTGAGCTCGGGTTTCGTCAGCAGCGGGCTGTGATGACTAA--------A-AAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAGAGTCAACG----------

dme-mir-982 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:4259824-4259946 - TATCAAGTTAAAAAA------CGAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTGTTTTTA----TGCAT--C-----------AA-TTACTTGATATT-CATCCTTG-AACTAAATG----------GTTT-TAGAGCTGCAAGA----AAAATTGT
droSim1 chrX:3274541-3274667 - TATCAAGTTAAAAAA------CGAAATCATGCTAGATCATTAACAAGTATCATGTAAATTGAATTTTTGTATATAT--C-----------AA-TTACATGTTATT-CGTTCTTG-AACTTAATG----------GTTT-TAGAGCTGCAAGA----AAAATTGT
droSec1 super_4:2464986-2465108 + TATGAAGTTAAAAAA------CGAAATCATGCTAGATCAAGAACAAATATCATGTAAATTGCTTTTT----TACAT--A-----------AA-ATACAGGATATT-CGTTCTTG-AGCTTAATG----------GTTA-TAGAGCTGCAAGA----AAAATTGT
droYak2 chrX:4178368-4178492 + TATCAAGTTCAGAAA----TATAAAATCATGCTAGATCTTGGAAAAATATCTAATAGATGGTTTTTA----TACAT--C-----------AA-TCAATTGATATT-TTTCCTTG-AACTAAATG----------GGTT-TAGTGCTGCAGCA----AAAATGGT
droEre2 scaffold_4690:1630508-1630651 - TATCAAGTTAAAAAA----TATAAAAGCAGTCCAGATCATGGAAAAATATCAAATAGATTGTTTTAT----TTCAGTCCAAACAATACATAA-TCACGCGAGTCA-TAGTATCGAAATTTAGCA----------ATTTATGAAGTTAAAAAAATATAAAGCCAT
droAna3 scaffold_13335:212413-212477 + TTTGTGGATC--------------------------------------------------------------------------------GA-TTTCCAGTAATT-CTGCATCA-AAATCCGG-ACAAAAAATATTTT-T----------TG----AAAATTTT
dp4 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:5428540-5428655 - TTG-TTGTTGGCTGTTAACAACTTGTTCGATTTGGCCTCTGGGTAGACTCTATATA-----------------TGT--A-----------AATATATAT-ATATCTAATCTCTA-ATATCTCAC----------GTTT-TACACCTGCAAAA----AAAACTTC
droGri2 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------

dme-mir-983-1 antisense_to_intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:4262327-4262447 - ATATGCATATGCTATTATATTGCAATAATTAAATAAT-ACGTTTCGAACTAATGATTTTCAGTTCATTCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACTCGCTGGC-GTA
droSim1 chrX:3277334-3277447 - ---TGCAT---ATGATATCTTGCAGTAATTTAGTAAT-ACCTTTCGAACACATGATTTTCAG-TCATTCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGC-GGA
droSec1 super_4:2462215-2462328 + ---TGCAT---ATGATATGTTGCAGTAATTTAGTAAT-ACCTTTCGAACATATGATTTTCAG-TCATTCATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGC-GGA
droYak2 Unknown ---------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:1633112-1633231 - GGAATTGTGTGATATTATGTTACAGTGATTTAATAAT-TCGATTCGAAGTTATGTGCTTTAA-TCATTCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAACTCGTTGGC-GTG
droAna3 Unknown ---------------------------------------------------------------------------------------------------------------------------
dp4 Unknown ---------------------------------------------------------------------------------------------------------------------------
droPer1 Unknown ---------------------------------------------------------------------------------------------------------------------------
droWil1 Unknown ---------------------------------------------------------------------------------------------------------------------------
droVir3 Unknown ---------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:31109889-31110001 - AACAACGTATGTTACTATATTAAAATAACTAAATAATTAAAACCAAAACCTATCAATTTAAT-CAATAAACG------AAATTTGTTATCTAGCT---TTAAGTACTTGAAAAGCTCATGATA
droGri2 Unknown ---------------------------------------------------------------------------------------------------------------------------

dme-mir-983-2 antisense_to_intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:4262501-4262629 - ATTATATGCATATGCTATTATATTGCAATAATTAAATAATACGTTTCGAACTAATGATTTTCAGTTCATTCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACTCGATGGCGGATGAGA
droSim1 Unknown ---------------------------------------------------------------------------------------------------------------------------------
droSec1 Unknown ---------------------------------------------------------------------------------------------------------------------------------
droYak2 Unknown ---------------------------------------------------------------------------------------------------------------------------------
droEre2 Unknown ---------------------------------------------------------------------------------------------------------------------------------
droAna3 Unknown ---------------------------------------------------------------------------------------------------------------------------------
dp4 Unknown ---------------------------------------------------------------------------------------------------------------------------------
droPer1 Unknown ---------------------------------------------------------------------------------------------------------------------------------
droWil1 Unknown ---------------------------------------------------------------------------------------------------------------------------------
droVir3 Unknown ---------------------------------------------------------------------------------------------------------------------------------
droMoj3 Unknown ---------------------------------------------------------------------------------------------------------------------------------
droGri2 Unknown ---------------------------------------------------------------------------------------------------------------------------------

dme-mir-984 antisense_to_intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:4262664-4262783 - TGGCTTCTATTGCGTAGAAACAAATTTCATTGAGGTAAATACGGTTGGAATTTTGTCTTTTAACTATAAATCCAACCGAATTTGGCTCGGCGAAATTTTTCAGTTTACTGGCGTCGAAAA
droSim1 chrX:3277428-3277474 - TGGCTTCTACTCTCT--------ACTTCATTGCTTTGCATATGAT---------------------------ATCTTGCAGT--------------------------------------
droSec1 super_4:2462188-2462234 + TGGCTTCTACTATCT--------ACTTCATTGCTTTGCATATGAT---------------------------ATGTTGCAGT--------------------------------------
droYak2 Unknown ------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:1633226-1633277 - C---TTGTAA-ATGTACAAACAAATCTCAGTGTATAGCTTAAATC---------------------------CACCGGAATT--------------------------------------
droAna3 Unknown ------------------------------------------------------------------------------------------------------------------------
dp4 Unknown ------------------------------------------------------------------------------------------------------------------------
droPer1 Unknown ------------------------------------------------------------------------------------------------------------------------
droWil1 Unknown ------------------------------------------------------------------------------------------------------------------------
droVir3 Unknown ------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6359:3791288-3791288 - T-----------------------------------------------------------------------------------------------------------------------
droGri2 Unknown ------------------------------------------------------------------------------------------------------------------------

dme-mir-985 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:16085272-16085387 - TTTATAATTATATTATATATAATAGCACTGCTGGCTCATTGGTACATTTCATAAGTACCTTATCAAATGTTCCAATGGTCGGGCAGAGCTATTATTTGTCCATGTTTTGGACTAGA
droSim1 chrX:12424811-12424913 - TTGATAATTA------------TAGCACTGCTGGCTCATTGGTACATTTCATAAGTACCTTATGAAATGTTCCAATGGTCGGGCAAAGCTATTACTGGTCCATGTTTTGGA-TAGA
droSec1 super_47:142584-142687 - TTGATAATTT------------TTGCACTGCTGGCACATTGGTACATTTCATAAGTACCTTATGAAATGTTCCAATGGTCGGGCAGAGCTATTACTTGTCCATGTCTTGGAATAGA
droYak2 chrX:10233193-10233294 - TTGATTACTG------------CAGCACTGCGGGCTCATTGGTACCTTTCATAAGTGCCTTATCCA-GGTTCCAATGGTCCGGCAGAGCTGTC-TTAGTCCTTGTTTTGGAATAGG
droEre2 scaffold_4690:10993681-10993783 + TCGACTACTG------------TAGCACTGCGGGCCCATTGGTACCTTTCATAAGTACCTTATCAAAGGTTCCAATGGTCTGGCAGAGCTGCT-TTAGTTCATGTTCTGGAGATGG
droAna3 Unknown --------------------------------------------------------------------------------------------------------------------
dp4 Unknown --------------------------------------------------------------------------------------------------------------------
droPer1 Unknown --------------------------------------------------------------------------------------------------------------------
droWil1 Unknown --------------------------------------------------------------------------------------------------------------------
droVir3 Unknown --------------------------------------------------------------------------------------------------------------------
droMoj3 Unknown --------------------------------------------------------------------------------------------------------------------
droGri2 Unknown --------------------------------------------------------------------------------------------------------------------

dme-mir-986 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:4332472-4332601 + TAGCCACGCAG--AGGA---------CACACCTG-------AAATTACCCATCTCGAATAGCGTTGTGACTGA-GGTAACTGCGCATCGAATCTACTCAGCGGCGAGGCTATTCAAGTAAGGTTATTTTGGGC----CAGCGACTTTA--CGACC
droSim1 chr2R:2956848-2956977 + TAGCCACGCAG--AGGA---------CACACCTG-------AAATTACCCATCTCGAATAGCGTTGTGACTGA-GGTAACTGCGCATCGAATCTACTCAGCGGCGAGGCTATTCCAGTAAGGTTGTTTTGGGC----CAGCGACTTTA--TGACC
droSec1 super_1:1974074-1974203 + TAGCCACGCAG--AGGA---------CACACCTG-------AAATTACCCATCTCGAATAGCGTTGTGACTGA-GGTAACTGCGCATCGAATCTACTCAGCGGCGAGGCTATTCCAGTAAGGTTGTTTTGGGC----CAGCGACTTTA--TGACC
droYak2 chr2L:16988548-16988677 + TAGAAACGCAG--AGGA---------CACACCTA-------AAATTACCCATCTCGAATAGCGTTGTGACTGA-GGTAACTGCGCATCGTATCTACTCAGCGGCGAAGCTATTCCAGTAAGGTTATTTTGGGC----CAGCGACTTTA--CGACC
droEre2 scaffold_4929:18305702-18305825 - TAGATACG--------A---------GATACCTA-------AGATTACCCATCTCGAATAGCGTTGTGACTGA-GGTAACTGCGCATCGAATCTACTCAGCGGCAAGGCTATTCCAGTAAGGTTATTTTGGGC----CAGCGACTCAA--CGACC
droAna3 scaffold_13266:1670175-1670300 - TGGTTTC-CTG--AGGA---------TACGTCCA-------AAATGACTCATCTCGAATAGCGTTGTGACTGATGGTATTTAAATAT------AAATCCGAGACAATGCTATTCTTGTAAAGTCATCTTGACC----AAGCAACTTTTTCTAATC
dp4 chr3:2308599-2308727 + TATCTCCTGAATCGGAG---------TACGACTG-------AAACAACCCGTCTCGAATAGCGTTGTGACTGAT-GA--CTGCATTTGTAATTTTCTCAGCGGCAGTGCTATTCCAGTTGGGTTGTTTGCGGCCAAACAACAACTATA-------
droPer1 super_2:2480065-2480185 + GAATCG--------GAG---------TACGACTG-------AAACAACCCGTCTCGAATAGCGTTGTGACTGAT-GA--CTGCATTTGTAATTTTCTCAGCGGCAGTGCTATTCCAGTTGGGTTGTTTGCGGCCAAACAACAACTATA-------
droWil1 scaffold_180700:3161017-3161152 - TTACTACACAA--AGTGAACAGTTC-GATGACTT-------AAATGCCCAATCTCGAATAGCGTTGTAACTGAT-GA--TTGT-GATATGAGAGAGTCAGCCACTATGCTATACGAGGTGGGGCATTTGTGGGT---AAACAACCAAA--TTACG
droVir3 scaffold_12875:9403376-9403510 + AAACTATAAAG--TG--TTTTAATGGTTCACTTAAATGGCTAATTGTCTTCTCTCGAATAGCATTATGGCTGAT-GACAAT---TCTGGAATAACATCAGTTGAAATGCCATTCGGGTTAAGGCACTTGAGAAATGGCAGCGA------------
droMoj3 scaffold_6496:17707880-17708014 - TGTTGGCGAAC------TTTCAATGGCTCATTTAACTGGCTAATTGCCTTCTCTCGAATTGCATTATGGCCGAT-GACACAATTC-TGCAAAATCATCAGTTGGAATGCCATTCGGGTCAAGGCATTTACGAATCGCCAACGA------------
droGri2 scaffold_15245:2671305-2671410 + TTGAATGGCT-------------------------------TATTGCCTTTTCTCGAATTGCATTGTGACTGAT-GAAAAT----TTAGAAATTCATCAGTTAAAATGCCATTCGAGTTAAGGCACTTATGCA-----------TTAA--CAACC

dme-mir-987 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:5200513-5200636 - GCG-GAAG--ACGA--AC------------AATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACAGGAAAA
droSim1 chr2R:3860388-3860511 - GCG-GAAG--ACGA--AC------------AATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACAGGAAAA
droSec1 super_1:2832514-2832637 - GCG-GAAG--ACGA--AC------------AATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACAGGAAAA
droYak2 chr2L:17856053-17856176 - GCG-GAAG--ACGA--AC------------AATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACAGGAAAG
droEre2 scaffold_4929:17456334-17456457 + GCG-GAAG--ACGA--AC------------AATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACAGGAAAA
droAna3 scaffold_12430:12714-12838 + ACG-GAAAA-ATGT--AC------------AATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAATTCAACAGGATAA
dp4 chr3:9267901-9268036 - ATG-CAAC--ACGA--ACACACACAGAAATAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGATATGCAACTGGATAA
droPer1 super_4:4590324-4590459 - ATG-CAAC--ACGA--ACACACACAGAAATAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGATATGCAACTGGATAA
droWil1 scaffold_180697:853193-853321 + GAGAGAAGGAGAGATCAT------------AATGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACAAAAATG
droVir3 scaffold_12875:1241652-1241774 - GCG-TC----GCTC--AC------A-----AATGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TTTATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACAGAAGAA
droMoj3 scaffold_6496:4307034-4307162 - ACG-GATATCGCGAATAA------------ACTGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGTTTATATCTAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACAGAAGCA
droGri2 scaffold_15245:9744744-9744853 + C-------------------------------TGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TTTATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACAAAAGA-

dme-mir-988 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:8046362-8046490 - CAAAAGAA---CAT------AGTT-G-----------------------------ACGGCGGTA--------------------CCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATT-TGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGA-TCTG-CGA---------A----------------ATACA-CAGTGGTAT
droSim1 chr2R_random:2089209-2089337 - CTAGAGAA---CAT------TTTT-G-----------------------------ATGGCGGTA--------------------CCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATT-TGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGA-TCTG-AGA---------A----------------ATACA-CAGTGATAT
droSec1 super_1:5591420-5591548 - CTAGAGAA---CAT------TTTT-G-----------------------------ATGGCGGTA--------------------CCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATT-TGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGATGA-TCTG-CGA---------A----------------ATACA-CAGTGTTTT
droYak2 chr2R:8904838-8904966 + CTAAATAA---CAT------TTTT-C-----------------------------ATGGCGTTA--------------------CTGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATT-TGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGGTGA-CCTG-CGA---------A----------------ATACA-CAGGGATAT
droEre2 scaffold_4845:17747735-17747863 + CAGAAAAA---CAT------ATTT-G-----------------------------ATGACGGTA--------------------CCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATT-TGAT--CATCCCCTTGTTGCAAACCTCACGCC--GAAGGTGA-CCTG-CGA---------A----------------ATACA-CAGTGTTAT
droAna3 scaffold_13266:2579688-2579821 + TAATGGAA---TCA---GTAAGTG-G-----------------------------AAAGGTGTA--------------------CTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATAGGTATT-TGAT--CATCCCCTTGTTGCAAACCTCACGCC--CAAGGTGC-TTTC-CAACGG-----CA------------------ACA-TATCAGCAA
dp4 chr3:405625-405769 - CCGGATAA---C---------T-----------------GGGTATCCAGGAATCCAGACT------------------------GTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGCATT-TGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGTTGAAT--CCC-ACACCTA-----CACTCTCAT------ATAAT----GATCAT
droPer1 super_2:590063-590227 - AAGAAAAA---AGT------TGTTATATCCCGGATAACTGGGTATCCAGGAATCCAGACT------------------------GTGGACATTTTGGGTGTGTGATTTGTGGCAAAGTGATATGCATT-TGAT--CATCCCCTTGTTGCAAACCTCACGCC--AAAGTTGAAT--CCC-ACACCTA-----CACTCTCAG------ATAAT----GATCAT
droWil1 scaffold_181141:3254354-3254482 + AAGT---A---CATTTGTTTAGTT-A-----------------------------AAACGAATT--------------------GTGGGCATTTCGGGCGTGTGATTTGTAGCAAAGTGATATGTACT-TGAT--AATCCCCTTGTTGCAAACCTCACGCCGGAAAGATGT-C-TC--CA---------A----------------ATACATCAG-----T
droVir3 scaffold_12875:19840344-19840491 + TATGCACAGATCAT------GT-------------------------------CCAGAGTGT--GTAATA-----------TATCTGCGCATTTTGGGCGTGTGATTTGTGGCAAAGTGATGAGC--TTGGATTCCATCCCCTTGTTGCAAACCTCACGCC--AAAGGTGG-C------GCATTTAACCAGCA-----AT------ATAAA-GATTCATGT
droMoj3 scaffold_6496:6364073-6364233 - TGGATAAA---GAC------TATT-C-----------------------------GGAGTGTTA----TATCTATCATGTGTATTTGCGCATTTTGGTCGTGTGATTTGTGGCAAAGTGATGAGC-TA-TGATTCCATCCCCTTGTTGCAAACCTCACGCT--GAAGGTGA-C------GCATAGCAGCAACA-----ATTGAAAGATATT-CGATTAAAC
droGri2 scaffold_15245:18189031-18189168 + TAAA---G---CAT------ATTA-A----------------ATTC---------CGAGTGT--G--GTA-----------TTTCTGTGCATTTTGGGCGTGTGATTTGTGGCAAAGTGATGAGC--T-TGATTCCATCCCCTTGTTGCAAACCTCACGCC--GAAGGTGG-C------GCATCTAAGCA----------------ACA-A-TATTAATAT

dme-mir-989 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:10032841-10033044 - ATT-TTATTTAAGTACAA-------AGATTTTGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACAGGTGACACTGATC---CGGATTTGGTAGTTG-ACAAATCCTCCATG-----------------------------CCGAGATTAGTTTCATTTTGCGTCTTTTGAA------TTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTACAAG-CAACA------CGAA-GT---GA
droSim1 chr2R:8799008-8799211 - ATT-TTATTTAAGTACAT-------AAATTCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACTGGTGACACTGATC---CGGATTTGGTAGTTG-ACAAATCCTCCATG-----------------------------CCGAGATTAGTTTCATTTTGCGTCTTTTGAA------TTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTGCAAG-CAACA------CGAA-GT---GA
droSec1 super_1:7540579-7540782 - ATT-TTATTTAAGTACAG-------AAATTCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACTGGTGACACTGATC---CGGATTTGGTAGTTG-ACAAATCCTCCTTG-----------------------------CCGAGATTAGTTTCATTTTGCGTCTTTTGAA------TTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCCGAAATTGCAAG-CAGCA------CGAA-GT---GA
droYak2 chr2R:9968911-9969114 - TTTTTTATTTAATTACAA-------AGATGCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACACAGGTGACACTGATC---CGGATTTGGTGGTGG-ACCCATTCTC-ATT-----------------------------CCGAGATTAGTTTTATTTTGCGTCTTTTGAA------TTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGCAAG-CAACA------TGGA-GT---AA
droEre2 scaffold_4845:15804995-15805201 + ATT-TTATTTAATTACAA-------AGATGCCGGGAATCGGCCACTACCTTGCAGTCACGTGATGAA---AAGACCCAGGTGACACTGATC---CGGATTTGGTAGTCGTACAAATCCTCCATT-----------------------------CCGAGTTAAGTTTCATTCTGCGTCTTTTGAA------TTCGAACAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGCAAG-CAACA------TGTA-GGCA-TA
droAna3 scaffold_13266:5886554-5886734 + A--------------CCA-------ACGTTTCGGGAAGTGGCCACTACCTCGCAGTCACGTGATGCC---AAAATGCAACTGACACTGATC---CGGAGATGGT------------CCTCCATC---------C-------------------TTGGGATTAGTGTTAATTTGTGTTTTTTTTA------TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTCCTAA-CAACA------AAAA-GT---GA
dp4 chr3:2729279-2729420 - A-------------------------CGTTGCGGGAATGGGCCACTACCTCGCAGTCACGTGATATC---GGAATGCAA------------------------------------T-----------------------------------------GATCTACGTTAAATTGTGTTTCTT---------TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAG-CAACA------GAAATGT---AC
droPer1 super_2:2918784-2918948 - TTG-TAAACCAAGAAGAACCAAACAACGTTGCGGGAATGGGCCACTACCTCGCAGTCACGTGATATC---GGAATGCAA------------------------------------T-----------------------------------------GATCTACGTTAAATTGTGTTTCTT---------TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAG-CAACA------GAAATGT---AC
droWil1 scaffold_180745:1541090-1541255 + TAC-GAGTTCGAGTACAA----TAAATGTTTTGGGAATTGGCCACTACCTCGCAGTCACGTGATGAG---AGA---------------------------------------------------GATGCAAGA------------------------GGACTTTG------TATGCCATTTGCATTTAATATTTCATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGAGCTTTAAAGTCATCA------AGAA-GG---AA
droVir3 scaffold_12875:1889282-1889470 + A---------------------AAAACGATTCGGGAATTGGCCACTACCTCGCAGTCACGTGATCCA---CAAACGCAGC--------------CGGCTCTGGTGCTTG-GGAAA---------AATACAATTTTCTTTTGTTTTCCTGGGCGCCGCA-------ACGTTTTGCGT----TCA--------TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTGCAG-CCACA------GCGC-GAAGTG-
droMoj3 scaffold_6496:23382296-23382464 - A---------------------AAAACGATTCGGGAATTGGCCACTACCTCGCACTCACGTGATGCACTCAAAACGCCGACGAGGACGT---------------------CCAAATT--CCAT---------TTTCT--CGTTTTCCTC--------------TGTCGTTTTGCGT----TGA--------TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGCC-----CCAGCAATCCG----------
droGri2 scaffold_15112:3992495-3992691 + ATG-TAAT-----GAA------AAAGCGTTCCGGGAATTGGCCACTACCTCGCAGTCACGTGATGCC---ACAAGGCGGGC-ACGCCGTGCAACATCCTCTCTTCGTTT-ACACATCTCCTCTT-----------------------------GAGAGGATTGCGTCGTTCCGCCT----TGAA-------TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTCCCA-CAACA------AGAA-CA---AC

dme-mir-990 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:12782713-12782828 - TGGGAAAC-----------TGGCGA----ATCTG------------CTCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGGCCAG--------------CTTTCAGCTTCGGTGCC-ATTT-----------------------------------------CACCC------------CGAGCACCAAGAGCATCAGACT
droSim1 chr2R:11518341-11518456 - TGGGAAAC-----------TGGCGA----ATCTG------------CTCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGGCCAG--------------CTTTCAGCTTCGGTGCC-ATTT-----------------------------------------CACCC------------CGAGCACCAAGAGCATCAGACT
droSec1 super_1:10286785-10286900 - TGGGAAAC-----------TGGCGA----ATCTG------------CTCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGGCCAG--------------CTTTCAGCTTCGGTGCC-ATTT-----------------------------------------CACCC------------CGAGCACCAAGAGTATCAGACT
droYak2 chr2R:16191830-16191945 + TGGGAAAC-----------TGGCGA----ATCTG------------CTCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGGCCAG--------------CTTTCAGTTTCGGTGCC-ATTT-----------------------------------------CACCC------------CGAACAGCAAGACCATCAGACT
droEre2 scaffold_4845:13064860-13064974 + TGGGTAAC-----------TGGCGA----GTCTG------------CTCTGC-GACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGGCCAG--------------CTTTCAGTTTCGGTGCC-ATTT-----------------------------------------CACCC------------CCAGCACCAAGAGCACC-GACT
droAna3 scaffold_13266:13815719-13815830 + TGGGAAAT-----------TGTCGA----AGCCA------------CTTTGC-GACATTCCCCGTTCTGCGTTGGCCCAAGGTGCACGTGGGGCCGACGA----------CTCTCCGCTTCCGGACCCATTG--------------------------------------------------------------CCGAAAATACATTCTTCA
dp4 chr3:6727705-6727891 - TGGGAAAC-----------TGGCGA----GGCG-AGGCGAGGACTCCTCTGC-GACATTCACCGTTCAGCGTTCGGCCAGCGAGCACGTGGGTTAC--GCCTGAAGCTCCAATTCGGTTACGGT------TTCGGCTACGGCTACGGCTACGGGTACGGCTACGGCTACGGTACATCCTCCACACTAGACGGCGGGTTGAGGGGGTCGGACA
droPer1 super_2:6950668-6950854 - TGGGAAAC-----------TGGCGA----GGCG-AGGCGAGGACTCCTCTGC-GACATTCACCGTTCAGCGTTCGGCCAGCGAGCACGTGGGTTAC--GCCTGAAGCTCCAATTCGGTTACGGT------TTCGGCTACGGCTACGGCTACGGGTACGGCTACGGCTACGGTACATCCTCCACACTAGACGGCGGGTTGAGGGGGTCGGACA
droWil1 scaffold_180700:6478759-6478837 - TGGGAAATACATCTTCGTTTGGCTTTAGTTTCTC------------TTCTGCGGACATTCAATGTTCTGCGTTTGCCCCAAGCGCACGTGG-------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:2573949-2574010 + TGGGAAAC-----------TG-CGA----AGCTG------------CTTTGC-GACATTCGACTTGCTGCGTTCGTCGCCGACGCACGTGG-------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:22657688-22657749 - TGGGAAAC------------GGCGA----AGCTT------------CTGTGC-GACATTCAACGTTCTGCGTTCGTCGCCGACGCACGTGG-------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15112:4702153-4702224 + TGGGAATT-----------TTGCGA----AGCTGCTGCTGTGGCT--GCTGC-GACATTCAACGTTCTGCGTTGGCCGCCGACGCACGTG--------------------------------------------------------------------------------------------------------------------------

dme-mir-991 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:16472690-16472815 - GTAGGATATCAAAACTATCA-------CTGCAGTTTCAGG-----CTTTTCCCAACTACACCTATTAAT----ACATATTTTA------------------ACGTCCTATTAAAGTTGTAGTTTGGAAAGTTTTGGTTTTGCATTAGAAATC-GCCACTCA
droSim1 chr2R:15134383-15134509 - GGGGTATATCAAAAATATCA-------CTGCAGTTTCAGG-----CTTTTCCCAACTACATCTATTAAT----ATTTATTTTA------------------ACGTCGTATTAAAGTTGAAGTTTGGAAAATTTTGGTTTTGCATTTGAAATCCGCCACTCA
droSec1 super_1:14027408-14027534 - GGGGTATATCAAAAATATCA-------GTGCAGTTTCAGT-----CTTTTCCCAACTACATCTATTAAT----ACTTATTTTA------------------ACGTCGTATTAAAGTTGAAGTTTGGAAAATTTTGGTTTTGCATTTGAAATCCGCCACTCA
droYak2 chr2R:12723766-12723891 + GGAGGATACAAAAAAATCGC-------CTGCAGTTTCAAG-----CTTTTCCCCACTCCTTGCTTTAAT----ACTTATTTTA------------------ACGTCGTATTAAAGCCAGAGTTTGGAAAGTTTTGATTCTGCATTAGAAATC-GCCACCCA
droEre2 scaffold_4845:10619033-10619157 - GGAGAATACCAAA-CTAGCA-------CTGCAGCTTCAAG-----CTTTTCCCCACTCCTTGCTTTAGT----ACTTATTTTA------------------ATGTCGTATTAAAGCCAGAGTTTGGAAAGTTTTGATTCTGCTTTTTAAATC-GCCACCCA
droAna3 scaffold_13266:4131534-4131677 + TATTACTATTACAAACATTGTGCAACACTGCCGAATTGGAGACAACTTGGCTGGAATCAATCCATTCATTCTTTTCAATTTTGGCAGCCGACGGGGTAAGACCTCCCTATT-------TAAGTGGTAAAGTGATTTCTTGGAATTAAAGAA----------
dp4 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------

dme-mir-992 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:16472804-16472925 - ACAAAT--------CT-----AGACATGATTTTCCCAAGTGCCTGGTATCAGCAAAGTGT-----TATTTTTTATGTTT-------------------------------------------------ATGTAAAGTACACGTTTCTGGTACTAAGTACTTCGAGAAAGTT---------------ACCTGCGTAGGATATCAA
droSim1 chr2R:15134498-15134613 - AGGAAT--------CT-----AGACATGATTTTCGCAAGTGCCTGGTTTCAGAGAGGTGT-----AATTTTT---G----------------------------------------------------TTGTATAGTACCCTTTTTTGGAACCAAGCCCTTTGAGAAACTT---------------ACCTGCGGGGTATATCAA
droSec1 super_1:14027523-14027641 - AGGAAT--------CT-----AGACATGATTTTCGGAAGTGCCTGGTATCAGATAGGTGT-----AATTTTT---GTGT-------------------------------------------------TTGTATAGTACACGTTTCTGGAACCAAGCCCTTTGAGAAACTT---------------ACCTGCGGGGTATATCAA
droYak2 chr2R:12723658-12723777 + AGGACT--------CT--T--GGATCTGATTTTCCCAAGTGCTTAGTATCAGCAAGGTGT-----AATTTTT---GTTT-------------------------------------------------GGTTAAAGTACACGTTACTGGTACTACGTACTTCGAGAAACCT---------------AACTACGGAGGATACAAA
droEre2 scaffold_4845:10619147-10619257 - AGAAC--------------------CTGATTTTCCCAAGTGCATAGTATCAGCAAGGTGT-----AATTTTT---ATTT-------------------------------------------------GGGTAAAGTACACGTTACTGGTACTAGGTACTTTGAGAAACAT---------------GACTACGGAGAATACCA-
droAna3 scaffold_13266:4131420-4131545 + TAAAAT--------TCATTGTAAACCATACTTTTTAAG--GAGCAGTATCCACAATTTAA---------------GTTT-------------------------------------------------TTTCGTGGT----ATTTGCGGCATTGCCAACTTTAAGAAAAGTTCAAAGGGCGCTGTTACAAGCTATTACTATTAC
dp4 chr3:8679002-8679138 + GTCGTT--------CT-----CCATCTCTTTCTCGCGTC-GCGTCGCTTAAACTATGTATGTATGCATTTTGTACATACGGTTAAATTCAAATGTA-------------ATCGGTTCCCAAACGCTCGTTTCATGTTTTCATTTTCTCGAATTTTCACG----------------------------------------TTTAG
droPer1 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 scaffold_181096:3840730-3840836 + GCATT---------AT-----AGAAAACA--------AACGATTGTT----------------------------------------TACTGGCCATTTTGCTAATCTTTT-----------------TGGTAATCTAATC-TTTACGGTATCAAAATTAGTTAGAAAA-T---------------ACTTAATAATTATATTA-
droVir3 scaffold_13042:3503607-3503688 - ATAAAAGGCAATTCCT--T--AGAATT--TTTCTTCAATTAATTAATTCT--------GT-----TATGTTTTATATT-------------------------------------------------------------TAATTTCCAATAATAAGTTCTTC------------------------------------------
droMoj3 scaffold_6680:4944926-4945004 - GTTTAT--------AT---------ATG-------AAAATATTTGATATATGCAA------------TTTAT--------------ACAAAGAACTTTTTGCTA-------------------------------------------------------TTCTAAAAAATA---------------AA------CGAACATCCA
droGri2 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

dme-mir-993 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:2602040-2602188 + GG-GATCTC---------------------------CAATTGT--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-CGG-CA-CATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACC--TCAA--------TATG
droSim1 chr3R:2632916-2633065 + GG-GATCTC---------------------------CAATTGT--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-CGG-CG-CATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACC--TCAAT-------GAAA
droSec1 super_6:2693177-2693327 + GG-GATCTC---------------------------CAATTGT--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTTTCGG-CG-CATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACC--TCAAT-------GAAA
droYak2 chr3R:7811352-7811500 - GG-GATCTC---------------------------CAATTGT--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-CGA-CG-CATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAATAAACC--TCAA--------GACA
droEre2 scaffold_4770:2845885-2846032 + GG-GATCTT---------------------------CAATTGT--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-CGA-CG-C-TTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAATAAACC--TCAA--------GCCA
droAna3 scaffold_13340:5446725-5446870 - AC-GATCTT---------------------------CAATTGA--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGTT-CGA-TG-CATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--AT-----------T
dp4 chr2:19773774-19773922 - CG-GATCTT---------------------------TGATTGC--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGCC-CGA-TG-TATTTTCGAGTGTTTGTGTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--TC--------TGAA
droPer1 super_3:2522178-2522326 - CG-GATCTT---------------------------TGATTGC--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGCT-CGA-TG-TATTTTCGAGTGTTTGTGTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--TC--------TGAA
droWil1 scaffold_181089:11961167-11961347 + GATAATTTT---------------------------CATTTGTTTTTATTCAAGTTACACCGAAACAAAAAAGAAAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTTTAAAGTGCATTTCCGATGCCATTG-------------TCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--AATGACGACATAAA
droVir3 scaffold_13047:6141838-6142002 - GT-GGTCTCGTACTGGGTGAAGTGGGGGTCAGTGAATAACAGA--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATAGTGCATT-CAAATGCCATT-------------CTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCA----------AAA
droMoj3 scaffold_6540:16546170-16546300 - -------------------------------------AACAGA--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATAGTGCATA-CGAATGCCATTG-------------TCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCAA--------ACTC
droGri2 scaffold_14906:11483329-11483464 - GT-GATATT---------------------------CA---GA--------------------------------AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TTAGTGCATT-CAAATGCCATTG-------------TCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACG-AA--------TAAA

dme-mir-994 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:6233844-6233964 + C--------------GC------GTCCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCAAG--AATTTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAACAGC-----CTAGATCC
droSim1 chr3R:15159284-15159404 - C--------------GC------GTCCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCATG--AATTTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CTAGATCC
droSec1 super_0:15709450-15709570 - C--------------GC------GTCCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCATG--ATTTTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CTAGATCC
droYak2 chr3R:10262359-10262479 + C--------------GC------GTCCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCAAG--AATTTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CTAGTTCC
droEre2 scaffold_4770:15384035-15384155 - C--------------GC------GTCCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCATG--AATTGTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CTAGTTCC
droAna3 scaffold_13340:867356-867469 - -----------------------------GATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCTCG-AAGTCATTCCCATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CTAGATTT
dp4 chr2:7233487-7233613 - T--------------GTCGCGTTGTCCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTAACATACA--AATCCTTTACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CTAGATCG
droPer1 super_0:1094175-1094302 - T--------------GTCGCGTTGTCCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTAACATAAC-AAATCCTTTACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CTAGATCG
droWil1 scaffold_181108:495-611 + C--------------G--------ACATGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTAATTATTCAAATCTTTGACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CTA-----
droVir3 scaffold_13047:1194160-1194276 + C------------CAGC------GATTTTGATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACATTAG--AAGCTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CT------
droMoj3 scaffold_6540:5225156-5225284 + AGGTCTAACGTTGAAGC------GATATCAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACATTTC--AACCTATTACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAGC-----CT------
droGri2 scaffold_14906:5077444-5077577 - G--------------ATGACAATGATTTACATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACATTTGAAACTCTCTTACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAGCAACAAACCCTAACTCC

dme-mir-995 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:16561630-16561749 + TTGACG---------------AATGTCA-------------------------TCCAC--------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCG----CCGTTTCC-----------GTA----ATCCGTAGCACCACATGATTCGGCTTCGTGGTACA-----------------GGATATCATCGGT-TTTTGCTA
droSim1 chr3R:4901723-4901838 - -----A---------------AATGTCG-------------------------TTCAC--------------------------CTGTACCCCGCAGCCCGAATTATGTGGGAGCTGCG----CCGTTTCC-----------AAA----GTCCGTAGCACCACATGATTCGGCTTCGTGGTGCA-----------------GGATATCATCGGT-TTTTGCTA
droSec1 super_27:174263-174377 - ---------------------AATGTCG-------------------------TTCAC--------------------------CTGTACCCCGCAGCCCGAATTATGTGGGAGCTGCG----CCGTTTCC-----------GAA----GTCCGTAGCACCACATGATTCGGCTTCGTGGTGCA-----------------GGATATCATCGGT-TTTTGCTA
droYak2 chr3R:5351033-5351167 + TGGACGTTGCCATCCTGGATTAAACTCA-------------------------TTCAC--------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCG----CCGTTTCT-----------AAA----ATCCGTAGCACCACATGATTCGGCTTCGTGGTGCA-----------------GGACATCAGCAAT-TTTTGGTA
droEre2 scaffold_4770:5101897-5102016 - CTGACG---------------AATGTCA-------------------------TTCAC--------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCG----CTGTTTTC-----------AGG----ATCCGTAGCACCACATGATTCGGCTTCGTGGTGCA-----------------GGACATCAGCGGT-TTTTGCTA
droAna3 scaffold_13340:13021664-13021782 - TTGACA---------------AATGTCA-------------------------TTCGC--------------------------CTGTCCTACGCAGCCCGGATTCTGTGGGAGCTGCG----CCGTTCTT-----------TCT----ATCCGTAGCACCACATGATTCGGCTTCGTGGTGCA-----------------GGGCATCATCC-T-GTTGGCTG
dp4 chr2:5900237-5900376 + TTGACG---------------AATGTCA-------------------------AACACCTC-GCAGGCTCTGCAGCAGACCCTGCTGCACAACGCAGCCCGGATTCTGTGTGTGCTGCG----CTGTGTTC---------TTAAA----AGCCGTAGCACCACATGATTCGGCTGCGTGGTCAG-----------------CCACACCTTCAG--------TA
droPer1 super_19:1637056-1637197 + TTGACG---------------AATGTCA-------------------------AACACCTC-GCAGGCTCTGCAGCAGACCCTGCTGCACAACGCAGCCCGGATTCTGTGTGTGCTGCG----CTGTGTTC---------TTAAA----AGCCGTAGCACCACATGATTCGGCTGCGTGGTCAG-----------------CCACACCTTCAGT-ATC-----
droWil1 scaffold_181108:2305175-2305323 - TTGACG---------------AATGTCAAATTTTCTGACTCCTGCAACTCATGTAAGG--------------------------CTTCACCAAGCAGCCCGGATTCTGCGAGTGCTGCG----CTACAACA-----------AGAACTAAGACGTAGCACCACATGATTCGGCTTCATGGTGAA-----------------GTACATCGCAACG-TCATCGTG
droVir3 scaffold_13047:12148438-12148588 - TTGACG---------------AATGTCA-------------------------AACGGCTTGGCCGGCTCAACA---------GCTGTACAACGAAGCCCGGATACTGTGTGTGTTGCG----CTGTTTA------------GAG----GTACGTAGCACCACATGATTCGGCTTCGTGGTGCACGCAACTGCAACAGA--GGGCGTCAACGGT-ATTTATTA
droMoj3 scaffold_6540:29636954-29637102 + TTGACG---------------AATGTCA-------------------------AACAGCTTGGCTGGCTTGGTA---------GCTGAACTACGAAGCCCGGGTTTTGTGTGTGCCGCG----CTGTTTTG-------------A----GTACGTAGCACCACATGATTCGGCTTGGTAGTACAGGCTCATTCAACAAATTAGG---CATCAAT-TTTATAGA
droGri2 scaffold_14830:1051305-1051441 + TTGACG---------------AATGTCA-------------------------AAT---------------------------GCTGTACAGTGAAGCCCGGATTCTGTGTGTGCTGCGTTTGCTGATTTGCCATACACATAAAT----ATACGTAGCACCACATGATTCGGCTTCGTGGTGCTAG---------------CAACTCCATCGCCAGTTAGATA

dme-mir-996 five_prime_UTR Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:25042891-25043017 + GGAAGG---------------------------------------------------------------------------------------------------ATGCTCTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-GGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACAA-CGAA----G----A------GAGC
droSim1 chr3R:24713787-24713913 + GGAAGG---------------------------------------------------------------------------------------------------ATGCTCTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-GGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACAA-CGAA----G----A------GAGC
droSec1 super_4:3905684-3905810 + GGAAGG---------------------------------------------------------------------------------------------------ATGCTCTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-GGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACAA-CGAA----G----A------GAGC
droYak2 chr3R:21454418-21454540 - GGAAGG---------------------------------------------------------------------------------------------------ATGCTCTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-GGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACTA-CGAA----G----A----------
droEre2 scaffold_4820:2987415-2987537 - GGAAGG---------------------------------------------------------------------------------------------------ATGCTCTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-GGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACTA-CGAA----G----A----------
droAna3 scaffold_13340:14198945-14199070 - GGTCT----------------------------------------------------------------------------------------------------------TTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-GTTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACAC-CAAA----G----AGTCGGATAGT
dp4 chr2:1883607-1883737 + CAGCGT---------------------------------------------------------------------------------------------------TTGCTCTTCTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-TGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAACACAA-CGAACCGAA----A------GAGC
droPer1 super_7:2047020-2047150 + CAGCGT---------------------------------------------------------------------------------------------------TTGCTCTTCTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-TGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAACACAA-CGAACCGAA----A------GAGC
droWil1 scaffold_181108:1735977-1736125 + GGATGGATGGAGTCCTTTCTATGTGGCAGCG----------------------------------------------------------------------------TCTCT----TGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGTTTGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAGCACAA-C-AA----G----A---GCGCAGC
droVir3 scaffold_12822:2333349-2333515 + GAGAGG-----------------CTGCAGCTGCTGCCTGATTTTTGATTTTTTTTT-TTTTTTTGTTTC--GCT----------------------------CTTTTGCTCTTCTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-TGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAACACA--------------------------
droMoj3 scaffold_6540:26449231-26449397 + GAGAGG---GAGGT----CTCTACTGCAGCTGCTGCCTGAT-----ATTTCTTTTT------------------------------------------------TTTGCTCTTCTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-TGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAATACACACAGC----G----A------AAAC
droGri2 scaffold_14624:3251484-3251700 + AGAGAGAGAGAGA---------------G--------AAATGTTTGCTTGCTCTCTATCTCTCTGTCTCTCGCCCACTTTCTAGCTTCAACTGCAACTGCAACTGCTGCTCTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGT-TGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTCAACACAC-AACACAAAAAAAAAAGAGGAGAGC

dme-mir-997-1 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:15152661-15152905 - CAATTAA-TATGTAGTTTA---------------TGGAT-----CCTCTTTCAATGAATTTAGT----ATGCCCAAACTCGAAGGAGTTTCACC------------------------------------------------TCCATAAGAGCGACAGTC-CTGGAGAAGTTATCAGAGCCAAAAAAATTCATA-TGATGATGCATTTTCC--------GTCTCTGAAAACGTCTTCAG-CAGAAGTTGTTTTTAGCGAAGTGAAACTCATT-CGATTTTGATCATACTA-ACGA---CATTGGAT------G-CTTG-----GATCGGCA----GTTTGGTGGAATATA
droSim1 chr3R:6329088-6329350 + CAATAAA-TATGTAGTTTTGGATACTCGCCAGTCAGGAT-----GCTCTGTCAATGAATTTAGT----ATGCCCAAACTCGAAGGAGTTTCACC------------------------------------------------TCCATAGGAGCGGCAGAC-CTGGAGAAGTTTTCAGAGCCAAAAAAATTCATA-TGATGATGCATTTTCA--------GTCTCTGAAAACTTCTTCAG-CAGAAGTTGATTTTAGCGAAGTGAAGCTCATT-CGATTTTGATCATACTA-ACGACATTTGTGGAT------G-CTTG-----GATCGGCA----GTTTGGTGGAATATT
droSec1 super_25:615309-615568 + CAATAAA-TATGTAGTTTTAGATACTCGCCAGTCAGGAT-----GCTCTGTCAATGAATTTAGT----ATGCCCAAACTCGAAGGAGTTTCACC------------------------------------------------TCCATAGGAGCGGCAGAC-CTGGAGAAGTTTTCAGAGCCAACAAAATTCATA-TGATGATGCATTTTCA--------GTCTCTGAAAATTTCTTCAG-CAGAAGTTGATTTTAGCGAAGTGAAGCTCATT-CGATTTTGATCATACTA-A---CATTTGTGGAT------G-CTTG-----GATCGTCA----GTTTGGTGGAATATT
droYak2 chrU:8935876-8936155 - AAAATAAAAGTTGAATTTTGAAAAATAAA--ATTTCCAA-----TTTTTGACCATGATTTTTGAACGTTTGCCGAAAATCGT----GTTTCTGCGACTATAAATATCCGTATTTTGATCATAACTTTCGAAATATTGGTCCAATCA-TGGAATGCCACAC-CTCGTTGAGTTC-----------------------GTAATTAAATTTCCAATCGAACTGTGTTTA---------AAAA-TAAAAGTTGAATTTTGAAAAATAAAATTT--CCAATTTTTGACCATG---------ATTTTTGAAC------G-TTTGCCGAAAATCG--T----GTTTCTGCGACTATA
droEre2 scaffold_4784:21223629-21223900 - CAAGACG--------CCTTAAA-----GCGAGTTCAGCTTTACTGTTCTA-GAATGCAGTTTAT----ATACCCAAACTCGAAGGAGTTCCACA------------------------------------------------TTAAGAAGAGCAGCAGAAGCAGAAAAAAATGTCTGGACCCTTGAAATTCATTTTGCAAATGCATTTCCATT------GGCTCGGAAATCTTTCTCTGTCAGGTGTTGATTTTTTAAAAGTGGAGCTCATT-CGATTTTGAATATATAAAATAACAGTTCTTGATATGTATGAGTTG-----GATTTGCACCTTGTCTGACAGAAAAAC
droAna3 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp4 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

dme-mir-998 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:17447586-17447758 - CT-------------------------------------------------------CGTCAGCAAT---------------------CGT-C----CTCGT------------------GTCAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCACTGACAACACTG--ACC-GC--------------TC---------CAG---GGCAAAT--TGTTCATTTTGAAATTGAAATTCTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCAC-AA---CATCTCTCG
droSim1 chr3R:4023089-4023261 + CT-------------------------------------------------------CGTCAGCAAT---------------------CGT-C----CTCGT------------------GTCAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCACTGACAACACTG--ACC-GC--------------TC---------CAG---GGCCAAT--TGTTCATTTTGAAATTGAAATTCTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCAC-AA---CATCTCTCG
droSec1 super_6:4044375-4044547 + CT-------------------------------------------------------CGTCAGCAAT---------------------CGT-C----CTCGT------------------GTCAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCACTGACAACACTG--ACC-GC--------------TC---------CAG---GGCCAAT--TGTTCATTTTGAAATTGAAATTCTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCAC-AA---CATCTCTCG
droYak2 chr3R:6285151-6285323 - CT-------------------------------------------------------CGTCAGCAAT---------------------CGT-C----CTCGT------------------GTCAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCACTGACAACACTG--ACC-GC--------------TC---------CAG---GGCCAAT--TGTTCATTTTGAAATTGAAATTCTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCAC-AA---CATATCTCG
droEre2 scaffold_4770:4217706-4217878 + CT-------------------------------------------------------CGTCAGCAAT---------------------CGT-C----CTCGT------------------GTCAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCACTGACAACACTG--ACC-GC--------------TC---------CAG---GGCCAAT--TGTTCATTTTGAAATTGAAATTCTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCAC-AA---CATCTCTCG
droAna3 scaffold_13340:5676182-5676384 + CT-------------------------------------------------------CGTCAGCAAT-------------------CTCGT-CTCCTCTCGT------------------GTCAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCACTGACAACACTG--ACCTGCTGCTGCTGCTGCTCTC---------CAGTTTGGCCAATTTTGTTAATTTTGAAATTGAAATTTTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCACCAAAAACATCTCTCG
dp4 chr2:23856839-23857018 - CT-------------------------------------------------------CGTCTGAAATA---------------TATATCGT-C----CTCGT------------------GTCAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCACTGACAACACTG--ACC-AT-------------TTC---------CAG---GGCCAAT--TGTTAATTTTGCGATTGAAATTTTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCAC-AA---CATCTCTCG
droPer1 super_3:6633404-6633583 - CT-------------------------------------------------------CGTCTGAAATA---------------TATATCGT-C----CTCGT------------------GTCAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCACTGACAACACTG--ACC-AT-------------TTC---------CAG---GGCCAAT--TGTTAATTTTGCGATTGAAATTTTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCAC-AA---CATCTCTCG
droWil1 scaffold_181089:8480191-8480341 + ---------------------------------------------------------------------------------------------------------------------------AAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCACTGACAACACTG--ACC-GC--------------TGCTTTAAACCTGG---GGCCAAT--TGTTCATTTTGAAATTGAAATTTTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCAT-CA---CA-------
droVir3 scaffold_13047:6339512-6339744 + CTTTATGTCGATGTTTTTTCGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAT-------AAAT-----------------GGAAA----CCATTTGCTCGCAACGCGCAAGCG-CAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCAGTG----CACTG--ACC-GT--------------TG---------CAG--AGGGCAAT--TGTTCAAATTGAAATTGAAATTTTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCACTAA-----------G
droMoj3 scaffold_6540:1739242-1739414 - CA-------------------------------------------------------AAT-ATCAAT---------------------GGATA----CCATT------------------AAAAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCAGTG----CACTGTAACC-GT--------------TG---------CAG--AGGGCAAT--TGTTCAAATTGAAATTGAAATTTTGTAGCACCATGAGATTCAGCTCTGGCGTGAGTTTCAAACATGCATTCACCAA---AAAATGAAA
droGri2 scaffold_14906:11660076-11660280 + CTTTATGTTGCTC------------------------------------------------------AAATGGGACCATTCTGTATATC-AAT----CCAAT------CAACGCGCAAGCG-CAAATTCATTTTGGAACTGAATTCTCGTGGGTCTGCAGTG----CACTG--ACC-GT--------------TG---------CAG--AGGGCAAT--TGTTCATTTTGAAATTGAAATTTTGTAGCACCATGAGATTCAGCTCTGGCGTGAATTTCAAACATGCATCCACCAAAT-CAAATCA-A

dme-mir-999 intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:17623934-17624068 - GATG--AAC---GGAG-AAG--------AA--------AGGAT-G-CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACA-CAGCCCAGTATCAA
droSim1 chr3R:17429586-17429720 - GATG--AAC---GGAG-AAG--------AA--------AGGAT-G-CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACA-CAGCCCAGTATCAA
droSec1 super_0:17996302-17996436 - GATG--AAC---GGAG-AAG--------AA--------AGGAT-G-CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACA-CAGCCCAGTATCAA
droYak2 chr3R:18443923-18444058 - AA-----AT---CGAG-AAG--------AA--------AGGAT-G-CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCACACCAGCCACATCAGCC--ACATCGG
droEre2 scaffold_4820:10463202-10463335 + GATG--AAC---GAAG-AAG--------AA--------AGGAT-G-CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACACCAGCC--ACACCAG
droAna3 scaffold_13340:8622498-8622632 - GTTGCCAAA---GGACCAAA--------AA--------AGGAT-G-CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAAAGCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCT-----AGCCTAC-CATCTCACTATC--
dp4 chr2:6480711-6480794 - ---------------------------------------------------------------CATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCC----AAGCAGCA--AGCC---------
droPer1 super_0:306015-306135 - GATG----TGAAGGAG-CCC--------AA--------AGGAT-GCCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCC----AAGCAGCA---------------
droWil1 scaffold_181130:11672712-11672848 - GACG--A-C---GA-CGACGACGCCAACGACAGCAGCAAAGATGTCCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----AAACAACA---------------
droVir3 scaffold_12822:3936742-3936840 - G---------------------------------------------CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTGTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTTAGCT----AATCAACA---------------
droMoj3 scaffold_6540:17209641-17209764 - ATTA--AAA---GG-G-CAG--------TG--------A-GTC-G-CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTG-CAGCC----AAACAACA-GCGACC--------
droGri2 scaffold_8129:786-906 - GATA----A---GGACAAGA--------GAC-------A-GCA-G-TCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGT-TTGGAGTCCAATGTTAACTGTAAGACTGTGTCTTGGTGGTTGCCAGCC----AAGCAACA-AA------------

dme-mir-9a intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:19558216-19558323 + CTCT------ATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGCCCAGCGAGA
droSim1 chr3L:18890412-18890519 + CTCT------ATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCAGCGAAA
droSec1 super_29:261369-261476 + CTCT------ATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCAGCGAAA
droYak2 chr3L:20989402-20989507 - CTCT--------ATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCAGCGAAA
droEre2 scaffold_4784:19355664-19355769 + CTCT--------ATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCAGCGAAA
droAna3 scaffold_13337:17332424-17332537 - ATCTTATATAACACTATGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCAGCGAAA
dp4 chrXR_group8:7634812-7634919 + TTCT------TCAATCAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCAGCGAAA
droPer1 super_48:412952-413059 + TTCT------TCAATCAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTCCAGCGAAA
droWil1 scaffold_180727:842215-842322 + CCCTCGC---ATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATACATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTTCATC---A
droVir3 scaffold_13049:13137002-13137114 + CGACCAGCCAGGATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGTGTCTGCTCAACGTA-
droMoj3 scaffold_6680:14226499-14226603 - A---------ATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGTGTCTGCTCAGCGTAA
droGri2 scaffold_15110:23882734-23882841 + TGCC------GCATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGTGTCTCTTCAACGTAA

dme-mir-9b intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:16698729-16698849 + TGTTGCTCTT------------T-TGTTTGCATATTATTTGCTCTTTGGTGATTTTAGCTGTATGGTGTTTATGTATATTCCATAGAGCTTTATTACCAAAAACCAAATGGTTTCTGCATTAT---GTTTGAGTTGA
droSim1 vom21g07.g1:730-849 + TGTTGCTCTT------------T-TGTTTGCATATTATTTGCTCTTTGGTGATTTTAGCTGTATGGTGTATA--AGTATTCCATAGAGCTTTATTACCAAAAACCAAATGGTTTCTGCATTAT---GCTTGAGTTGA
droSec1 super_7:345741-345859 + TGTTGCTCTT------------T-TGTTTGCATATTATTTGGTCTTTGGTGATTTTAGCTGTATGGTGTATA--AGTATTCCATAGAGCTTTATTACCAAAAACCAAATGGTTTCTGCATTAT---GCTTGAGTTGA
droYak2 chr2R:4404225-4404345 - GGTTGCTCTT------------T-TGTTTGCATATTATTTGCTCTTTGGTGATTTTAGCTGTATGGTGTGTTTATGTGTTCCATAGAGCTTTATTACCAAAAACCAAATGGTTTCTGCATTAT---GCTTGAGTTGA
droEre2 scaffold_4845:19768375-19768493 + AGTTGCTCTT------------T-TGTTTGCATATTATTTGCTCTTTGGTGATTTTAGCTGTATGGTGTGTA--TGTGTTCCATAGAGCTTTATTACCAAAAACCAAATGGTTTTTGCATTAT---GCTTGAGTTGA
droAna3 scaffold_12916:15864526-15864643 - AGTTGCTCTT------------T-TGTTTGCACATTATTTGTTCTTTGGTGATTTTAGCTGTATGGTGTCT---CATATTCCATAGAGCTTTATTACCAAAAACCAAATGGTTTTTGCATTTT---TTCTGAGTTGC
dp4 chr4_group3:8444179-8444302 + AGTTGATCTT------------T-TGTTTGCACATTATTTGATCTTTGGTGATTTTAGCTGTATGGTGTATATCAAAGATCCATAGAGCTTTATCACCAAAACCCAAATGGTTTTTGCATTTTTTCGCTTGAGTTGC
droPer1 super_1:9895298-9895421 + AGTTGATCTT------------T-TGTTTGCACATTATTTGATCTTTGGTGATTTTAGCTGTATGGTGTATATCAAAGATCCATAGAGCTTTATCACCAAAACCCAAATGGTTTTTGCATTTTTTCGCTTGAGTTGC
droWil1 scaffold_181132:873333-873452 - ATTGATTTTG------------A-TTTTCGCATATTATTTGGTCTTTGGTGATTTTAGCTGTATGGTGTATGAGCATAATCCATAGAGCTTTATTACCAAAAACCAAATGGTTTTTGCATTTT---GCTTGAGTTG-
droVir3 scaffold_12963:12862857-12862965 - TGTTGCCTTT------------TTATTTTGCATATTATTTGCTCTTTGGTGATTTTAGCTGTATGGTGTGCG--CGTATTCCATAGAGCTTTATTACCAAAAACCAAATGGTTTTTGCATT--------------GC
droMoj3 scaffold_6500:7202293-7202399 + TG--GCTTTT------------T-ATTTTGCATATTATTTGTTCTTTGGTGATTTTAGCTGTATGGTGTGCG--CGTATTCCATAGAGCTTTATTACCAAAAACCAAATGGTCTTTGCATT--------------GC
droGri2 scaffold_14978:831270-831399 + TGCTGCCCTTTGTTTGCCCTTTTGAGTTTGCATATTATTTGCTCTTTGGTGATTTTAGCTCTATGGTGTGCG--CATAATCCACAGAGCTTTATTACCAAAAACCAAATGGTTTTTGCATT-T---GCTTTCTTTT-

dme-mir-9c intron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:16697909-16698030 + CT----------------------------TGC-ACTA---TTTA--------------TCA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTCACGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACA------------------------------------------TGATAT----
droSim1 zdv96e12.b1:15-131 + CT----------------------------TGC-ACTA---TTTA--------------TCA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTCACGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACA----------------------------------------------------
droSec1 super_7:344892-345054 + CT----------------------------TGC-ACTA---TTTA--------------TCA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTCACGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAACCCA-AAACAGCCACAAATACAGGAATGATTAATGATAT----
droYak2 chr2R:4405017-4405183 - CT----------------------------TGC-ACTA---TTTA--------------TCA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTCGCGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAGCGCACCAACCAA-AAACAGCCACAAATACAGGAATGATTAAAAATATCTTT
droEre2 scaffold_4845:19767520-19767683 + AT----------------------------TGC-ACCT---TTTA--------------TCA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTCGCGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAACCAAAAAACAGCCACAAATACAGGAATGATTTCTAATAT----
droAna3 scaffold_12916:15865465-15865583 - CA----------------------------CGC-ACTCCCTTTCA--------------TTA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTCACGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACA----------------------------------------------------
dp4 chr4_group3:8443145-8443295 + CT-CTCCCATTCGCTGTCTGTCGACTTCCATGC-ACTT---TTTGTTCTCCTT------TAA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTTTTGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACA----------------------------------------------------
droPer1 super_1:9894267-9894417 + CT-CTCCCATTCGCTGTCTGCCGCCTTCCATGC-ACTT---TTTGTTCTCCTT------TAA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTTTTGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACA----------------------------------------------------
droWil1 scaffold_181061:30518-30658 - CCTCCCCTCTTCACCATC-------------------T---TTTCCTCTCCCTCCATCATCATTTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTTTTGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGCCA----------------------------------------------------
droVir3 scaffold_12963:12863840-12863951 - CA----------------------------CAC-ACAA---TTT---------------TCA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTTT---ACAGTTTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGCCA----------------------------------------------------
droMoj3 scaffold_6500:7201331-7201445 + AT----------------------------TGCCACTC---TT----------------TCA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTT-C--ACATATTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGACACCG-------------------------------------------------
droGri2 scaffold_14978:830199-830317 + AT----------------------------TGC-AATT---TCTT--------------TCA-TTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTCT---ATATCTTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGCCACCGCCT----------------------------------------------

dme-mir-iab-4 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:12681982-12682079 + CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACAAC
droSim1 chr3R:8791202-8791299 - CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGATAGCACGAGCAAC
droSec1 super_12:1472230-1472327 - CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGATAGCACGAGCAAC
droYak2 chr3R:11708953-11709050 - CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAAAGCACGAGCAAC
droEre2 scaffold_4770:8952402-8952499 - CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAAAGCACGAGCAAC
droAna3 scaffold_13340:7215188-7215285 - TGATTTTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGTAACACCTTCAAC
dp4 chr2:17671752-17671849 + -GAACCTGTGCGACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC
droPer1 super_0:11526558-11526655 + -GAACCTGTGCGACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC
droWil1 scaffold_181130:4905585-4905682 - TGAATCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATGCTATCCGGTATACCTTCAGTATACGTAACACGATGAAACACCAACAAC
droVir3 scaffold_12855:414691-414788 - AGAGCCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCGAC
droMoj3 scaffold_6540:1943729-1943826 + TGAGCCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC
droGri2 scaffold_14906:12815108-12815201 + -----CTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC

dme-mir-iab-8 intergenic Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:12681982-12682079 - GTTGTTAGTGCTCTCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCG
droSim1 chr3R:8791202-8791299 + GTTGCTCGTGCTATCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCG
droSec1 super_12:1472230-1472327 + GTTGCTCGTGCTATCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCG
droYak2 chr3R:11708953-11709050 + GTTGCTCGTGCTTTCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCG
droEre2 scaffold_4770:8952402-8952499 + GTTGCTCGTGCTTTCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCG
droAna3 scaffold_13340:7215188-7215285 + GTTGAAGGTGTTACCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAAAATCA
dp4 chr2:17671753-17671849 - GTTGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTCGCACAGGTTC-
droPer1 super_0:11526559-11526655 - GTTGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTCGCACAGGTTC-
droWil1 scaffold_181130:4905585-4905682 + GTTGTTGGTGTTTCATCGTGTTACGTATACTGAAGGTATACCGGATAGCATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAGATTCA
droVir3 scaffold_12855:414691-414788 + GTCGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAGGCTCT
droMoj3 scaffold_6540:1943729-1943826 - GTTGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAGGCTCA
droGri2 scaffold_14906:12815109-12815201 - GTTGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAG-----

Mirtrons

dme-mir-1003 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:20484312-20484397 + CAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT--------------GGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG
droSim1 chr3R:20323145-20323230 + GAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT--------------GGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG
droSec1 super_0:20818704-20818789 + GAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT--------------GGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG
droYak2 chr3R:26013202-26013287 - GAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT--------------GGCGGTCCTCTCACATTTACATATTCACAGGCGTCGTGAGCTGCG
droEre2 scaffold_4820:7574099-7574184 - GAAACTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT--------------GGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG
droAna3 scaffold_13340:4690326-4690418 - CAAGCTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCTTATTTG--------GCCGGTCCTCTCACATCTCCATATTCACAGGCGTCGAGAGCTGCG
dp4 chr2:1751559-1751647 - GAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCTT----G--------GTCAGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCG
droPer1 super_7:1904970-1905058 - GAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCTT----G--------GTCAGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCG
droWil1 scaffold_181089:9616822-9616911 - AAAGTTGCGCCGTAGGTGAGTATC-GGGTTGTGATTGGCTCCT----T------GTGGTAGTCCTCTCACATCTCTATATTCACAGGCGTCGCGAGCTGCG
droVir3 scaffold_13047:780932-781019 + AAAGCTGCGTCGTAGGTGAGTAAT-CAGTTGTGGGTGGCTTTT----T--------GAAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGTGAGTTGCG
droMoj3 scaffold_6540:4775668-4775755 + CAAGCTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTCTA----G--------TGAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGAGAGTTGCG
droGri2 scaffold_14906:5529285-5529380 - GAAATTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTTTT----GTTCTTAGGGAAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGCGAATTGCG

dme-mir-1004 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:3767606-3767703 + GTGGCTGGACAAAAGGT-TGGGGG--ACATTGATCTCGGAGACG-------------G-------------------------CGGTTTAACT--------------------GATCCATTCTCTCACATCACTT---CCCTCACAGTGCACGGTGCTTGTA
droSim1 chr2L:3722744-3722841 + GTGGCTGGACAAGAGGT-TGGGGG--ACATTGATCTCGGAGACG-------------G-------------------------CGGTTTAACT--------------------GATCCATTCTCTCACATCACTT---CCCTCACAGTGCGCGGTGCTTGTA
droSec1 super_5:1870685-1870782 + GTGGCTGGACAAGAGGT-TGGGGG--ACATTGATCTCTGAGACG-------------G-------------------------CGGTTTAACT--------------------GATCCATTCTCTCACATCACTT---CCCTCACAGTGCGCGGTGCTTGTA
droYak2 chr2L:3769291-3769388 + GTGGCTGGACAAGAGGT-TGGGGG--ACATTGATCTCGGAGACG-------------G-------------------------CGGTTTAACT--------------------GATCCATTCTCTCACATCACTT---CCCTCACAGTGCGCGATGTTTGTA
droEre2 scaffold_4929:3814030-3814127 + GTGGCTGGACAAGAGGT-TGGGGG--ACATTGATCTCGGAGACG-------------G-------------------------CGGTTTAACT--------------------GATCCAATCTCTCACATCACTT---CCCTCACAGTGCGCGGTGCTTGTA
droAna3 scaffold_12916:5837615-5837739 + GTGGCTGGACAAGAGGT-GAGATAACACGTT-----CTAACCAACTGATATGAAACTA------CGAATGTTTTTATCGCTGTCGATTCGAAC--------------------GA-----TCTCTCATATAACCGTACCTATTACAGTGCGCGGTGTCTGTA
dp4 chr4_group3:4962038-4962146 - GTGGCTGGACAAGAGGTGTGTGGG--ATACTGATTTTAGAGAAAAAAAAA----------A----------------------CCAT-T--AACGTGAGG--------------CTTCG-TTTCTCACATCATTT-TCCCCTCACAGTGCCCGGTGCCTGTA
droPer1 super_1:6454682-6454788 - GTGGCTGGACAAGAGGTGTGTGGG--ATACTGATTTTAGAGAAAA------------ATAA----------------------CCAT-T--AACGTGAGG--------------CTTCG-TTTCTCACATCATTT-TCCCCTCACAGTGCCCGGTGCCTGTA
droWil1 scaffold_180708:9298763-9298869 - ATGGTTGGATAAAAGGT--GGGGT--ACAACAACAACAAAAAT--------------A-------------------------CGAATATAATGGT-AAACTCTC-------TCTCTCAT---CTCTTATCATTT-TCTCCTCACAGTGCGCGTTCACTTTA
droVir3 scaffold_12963:14941260-14941364 - GTGGCTGGACAAAAGGT-TGGGGC--ACATTGATCTTCAAGAAACTCACAGCCA---G-------------------------CTCATT------------------------TACTCACTCTCTCTC-TCTTCT-CTCCCTCACAGTGCCCGCTGTCTGTA
droMoj3 scaffold_6500:17898451-17898546 - GTGGCTGGACAAGAGGT-AATTGATCACTCCTATCTCTGTCT-----------------------------------------CTCTTTCTCT--------------------TTCTGACTCTCTCCCA-CTCTT---TATTTGTAGTGCTCGCTGCCTGTA
droGri2 scaffold_15126:4437367-4437497 + GTGGCTGGACAAAAGGT-AGGAGAGCACATTGATCTTGAAGAAACTTGCAGAAA---A--CTCTCTAATACTCTCAC---------TCCATTT------------CTCTAACTCTCCCTCTCTCTTATTTAACTT---C-ATTTTAGTGCGCGCTGTTTATA

dme-mir-1005 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:4343681-4343771 + CCACCATTCTGACCTGTGAGTTGAT-CGA----TTTCGAGGTTTTG--------------------------------GCACAC------GAATA-------------TAATCTGGAATC-TTTAATTCGCAGTTCCCACCGAAATGT
droSim1 chr2L:4265544-4265633 + CTACCATTCTGACCTGTGAGTTGAT-CGA----TTTCGAGTTTTTG--------------------------------GC-CAC------AAATA-------------TAATCTGGAATC-TTTAATTCGCAGTTCCCACCGAAATGT
droSec1 super_5:2441095-2441185 + CCACCATTCTGACCTGTGAGTTGAT-CGA----TTTCGAGGTTTTG--------------------------------GCACAC------AAATG-------------TAATCTGGAATC-TTTAATTCGCAGTTCCCACCGAAATGT
droYak2 chr2L:4375638-4375728 + CCACCATTCTGACCTGTGAGTTGAT-CGA----TTTCGAGGTTTTG--------------------------------GCAGCC------AAAAA-------------TAATCTGGAATC-TTTAATTCGCAGTTCCCACCGAAATGT
droEre2 scaffold_4929:4420541-4420630 + CCACCATTCTGACCTGTGAGTTCAT-CGA----TTTCGAGGTTT-G--------------------------------CCAGCC------AAAAA-------------TAATCTGGAATC-TTTAATTCGCAGTTCCCACCGAAATGT
droAna3 scaffold_12916:13781299-13781395 - TAACGGTTTTGACTTGTAAGAACCA-AAACTACTTTCT--GTAT-C--------------------------------AAAGCC------AGAAA---CTAATCG---TAA--TTGAAAT-TATCTTAACCAGTCCCCATTGAGCTGT
dp4 chr4_group2:339129-339252 + CCACCATTTTGACATGTAAGTGTCC-ATA---TCCTCGAGGCTCCTGCAATGCACTGCAATGCACTGCAATGACCGCAATGCTG------ACGTA-------------TTATTTATGTTC-TCCGATCCCCAGTTCCCACTGAAATGT
droPer1 super_8:3550415-3550538 - CCACCATTTTGACATGTAAGTGTCC-ATA---TCCTCGAGGCTCCTGCAATGCACTGCAATGCACTGCAATGACCGCAATGCTG------ACGTA-------------TTATTTATGTTC-TCCGATCCCCAGTTCCCACTGAAATGT
droWil1 scaffold_180772:1844874-1844969 - TTACAATTCTATCATGTAAGTTAAAACGA----TTAAGTAATTTC---------------------------------ACACTT------ACATATATT---------TATTTAACTTTCTCTTGTCTCCTAGTCCCACTTGAAATGC
droVir3 Unknown CAGTGGTATTGACCTGTAAGTATG-----------------------------------------------------------------------------------------TTGAATT-TTCTTACTGCAGTTCCGCTGGAGATCG
droMoj3 scaffold_6500:22625692-22625724 + CCTCCATATTGCTCTGCGTGCAAGA-TGC----GCCCG--------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:16827853-16827948 - CCACCATTCTGACATGTAACC--AC-TGA----TCCTGATCCTT-G--------------------------------ATTG-CACTGCCCATTT---TGAATGCGTTTTC-------TT-TCTGCTTTGCAGTTCCCACGGAAATGG

dme-mir-1006 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:16724780-16724873 - CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droSim1 chr2L:16422879-16422972 - CGGGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droSec1 super_7:371570-371663 - CGGGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droYak2 chr2R:4378132-4378225 + CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droEre2 scaffold_4845:19796345-19796438 - CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droAna3 scaffold_12943:3938325-3938418 + CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGCGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTCCAATACCAGCTG
dp4 chr4_group3:3057660-3057753 + CGCGTCAACTTTCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--TGCCAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG
droPer1 super_1:4544383-4544476 + CGCGTCAACTTTCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--TGCCAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG
droWil1 scaffold_180708:1783971-1784066 + CGTGTTAATTTCCAGGTGAGTTTGAAATTGAAATGCCTAAATTGTTTTGTGTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATATCAATTA
droVir3 scaffold_12963:6536524-6536617 - CGTGTCAACTTTCAGGTGAGTTTGAAATTGAAATATGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droMoj3 scaffold_6500:25691037-25691130 - CGTGTCAACTTCCAGGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTACAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGTTG
droGri2 scaffold_15252:9753534-9753627 - CGCGTCAATTTCCAAGTGAGTTTGAAATTGAAATGTGTAAATTGTTTG--GTCCAATTTAAATTCGATTTCTTATTCATAGGTGCAATACCAGCTG

dme-mir-1007 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:21167397-21167491 - ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGTTC--TTGGA------C--TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGGATCTTCT
droSim1 chrX:12920203-12920297 + ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGTTC--TTGGA------C--TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT
droSec1 super_8:3474404-3474498 - ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--T-TGGTTC--TTGGA------C--TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT
droYak2 chrX:20343121-20343215 - ACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--T-AGGATC--TTGGA------C--TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT
droEre2 scaffold_4690:17696754-17696848 - ACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--T-GGGATC--TTGGA------C--TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT
droAna3 scaffold_13334:1054378-1054469 + ACGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--T----------TGGAA--TAGC--TCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCT
dp4 chrXL_group1a:9060607-9060705 + ACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAAT-TGAATCGAATCGA------ATCGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCT
droPer1 super_15:1454063-1454161 + ACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAAT-TGAATCGAATCGA------ATCGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCT
droWil1 scaffold_180702:162895-162984 - ATGAATCCATGCAATGTGAGTT--TTTTGATTTT---C--T-----TG--TTTAA------T--TTCGAAAAACTTTAATCGACTGTATTCTATCAGCTGATGGCATCTTCT
droVir3 scaffold_12970:7925725-7925826 - ACGAATCAATGAAATGTAAGCAGTGCTTGAGCTTATTC--TCTGGCTTCATTTGAC--CA--TTTTCTGATAAGCTCAATTAACTGTTT----GCAGCGGATGCCGCCCTCT
droMoj3 scaffold_6482:1600635-1600734 + ATGAGTCCATGAAATGTAAGCAGTGTTTGAACTAAATC--TCTGGCTA--CTTGGC--CG--TATATTGATAAGCTCAACTAACTGTTT----GCAGCGGACACCTATTTGG
droGri2 scaffold_15203:11134564-11134665 + GCGAATCAATACAATGTAAGCAGTGTTTGAACTGAATA--TCTGGTTA--TCCGACTTCA--TATACTGATAAGCTCAATTCACTGTTT----GCAGCGGATGGCGTCTTCT

dme-mir-1008 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:6773023-6773109 + AAGTTCCTCATCTATGTAAATA-TCTAAA-------------------GTTGAACTTGGCCAATG-------------------------------GCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAGTACTTC
droSim1 chr2R:5362602-5362688 + AAGTTCCTCATCTATGTAAATA-TCTAAA-------------------GTTGAACTTGGCCAACG-------------------------------GCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAGTACTTC
droSec1 super_1:4360092-4360178 + AAGTTCCTCATCTATGTAAATA-TCTAAA-------------------GTTGAACTTGGCCAACG-------------------------------GCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAGTACTTC
droYak2 chr2R:2355901-2355987 - AAGTTCCTGATATACGTAAATA-TCTAAA-------------------GTTGAACTTGGCCAACG-------------------------------GCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAATACTTC
droEre2 scaffold_4845:19001852-19001938 - AAGTTCCTCATATACGTAAATA-TCTAAA-------------------GTTGAACTTGGCCAACG-------------------------------GCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAGTACTTC
droAna3 scaffold_13266:18269903-18269989 + AAGTTTCTTATCTACGTAAGGA-ACTCAA-------------------TTTT------------------------------TACATTAAACCGAAGCAATTTAACACGTTTCTTATT-TCAGGAGAACGAGTACTTC
dp4 chr3:12187375-12187468 + AAGTTTCTCATTTATGTAAGGG-ATCGGC-------------------G-AGAGTTTTTCCCACG-GA----ATA---TCATTATATT---------------ATATTGTTATGTGCCTGCAGGAAAACGAGTACTTT
droPer1 super_44:370822-370915 + AAGTTTCTCATTTATGTAAGGG-ATCGGC-------------------G-AGAGTTTTTCCCACG-GA----ATA---TCATTATATT---------------ATATTGTTATGTGCCTGCAGGAAAACGAGTACTTT
droWil1 scaffold_180697:3635906-3636001 - AAGTTTCTTATCTATGTAAGACAATCCAC-------------------G-AGGTGGTT------GGGAAGACAAATTTTGAATA-ATT---------------GGATTTTGATTTTTCTACAGGAAAACGAATATTTT
droVir3 scaffold_12875:11727599-11727677 + AAATTTCTCATCTATGTAAGTG-ATGA---------------------------TGCGTCCATTGGGA----ATA---TCATTT------------------------AATTTGTGTTGGTAGGAAAACGAATATTTT
droMoj3 scaffold_6496:15129877-15129967 - AAGTTTCTCATCTATGTAAGTA-GTAATA-------------------GGTGTTTGTAGACAT-----------AT--TCAG--------------TTAATTTTCGCATTTGTGTATTGGCAGGAAAACGAATATTTT
droGri2 scaffold_15245:6497403-6497490 - AAATTTCTCATCTATGTAAGTG-ATGCAAATGAATAAATATTAATCATATTGCCTTTAATCAATG-------------------------------GT------------------CTTGCAGGAGAATGAGTATTTC

dme-mir-1009 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:19880562-19880652 - CTGTCCATTCAAGACGTAAGTGTAAGACTTTCTTGAGTTA---------CCCGCGATGAGTATCTCAAAA--ATTG-----TTACATTTCAGAGCGATAGCTATCCA
droSim1 chr2R:18425639-18425729 - CTGTCCATTCAAGACGTAAGTGTAAGACTTTCTTGAGTTA---------CCCGCGATGAGTATCTCAAAA--ATTG-----TTACATTTCAGAGCGATAGCTATCCA
droSec1 super_9:3164536-3164626 - CTCTCCATTCAAGACGTAAGTGTAAGACTTTCTTGAGTTA---------CCCGCGATGAGTATCTCAAAA--ATTG-----TTACATTTCAGAGCGATAGCTATCCA
droYak2 chr2R:19858946-19859036 - CTGTCCATTCAAGACGTAAGTGTAAGACTTTCTTGAGTTA---------CCCGCGAGGAGTATCTCAAAA--ATTA-----TTACATTTCAGGGCGATAGTTACCCG
droEre2 scaffold_4845:21253645-21253735 - CTGTCCATTCAAGACGTAAGTGTAAGACTTTGTTGAGTTA---------CCCACGTAGAGTATCTCAAAA--TTTG-----TTACATTTCAGAGCGATAGCTACCCA
droAna3 scaffold_13266:5750531-5750620 - CTATCGATTCAAGATGTAAGTTTTGAATACTTCTACTCTA---------TCTTGGA-ATGTCTCTCATAA--TTGT-----CCATCTTCTAGAACGATAGCTATCCA
dp4 chr3:7562600-7562686 - ATGTCCATACAAGATGTAAGTTCGAGAATC--------------CCAAACACATAAGTTCTTTTTTAACA------TCCAAATATTTTGTAGAGCGACAACATTCCA
droPer1 super_2:7758003-7758089 - ATGTCCATACAAGATGTAAGTTCGAGAATC--------------CCAAAAACATAAGTTCTTTTTTAACA------TCCAAATATTTTGTAGAGCGACAACATTCCA
droWil1 scaffold_180700:5103983-5104075 + TTATCTATCCAGGATGTAAGTATTTAAA--------GTTATTTTCAT----AATGACGGGAAATCAATGATTTGCATTC--ACTCATTGCAGAGTGATAACCTCCCA
droVir3 Unknown -----------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:14788216-14788309 + TTATCTCTACAGGAGGTAAGGACCAATTGGTA--AAGT------GAGAAATTGGAAGAAATTTATTGAAA--TTTA---TACTCGTGTTTAGGACAAGGAGTTCACA
droGri2 Unknown -----------------------------------------------------------------------------------------------------------

dme-mir-1010 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:18118586-18118686 + CTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAA----TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGA
droSim1 chr3R:17925969-17926072 + ATTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATA-TTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGA
droSec1 super_0:18476145-18476248 + ATTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATA-TTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGA
droYak2 chr3R:18962287-18962391 + GTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATATTTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGA
droEre2 scaffold_4820:9960766-9960869 - CTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATA-TTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTCGA
droAna3 scaffold_13340:9102978-9103081 + GTTCGTGCTTAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATA-TTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTATGAGGACCTGGA
dp4 chr2:12275938-12276041 + GTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTAACCAACCTTT-ATTGTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGGTACGAGGATCTCGA
droPer1 super_0:8195066-8195169 - GTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTAACCAACCTTT-ATTGTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGGTACGAGGATCTCGA
droWil1 scaffold_181130:12259759-12259863 + ATTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATATTTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGATACGAGGATCTCGA
droVir3 scaffold_13047:8363181-8363284 - GTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTCACAACAAAT-TTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGATCTGGA
droMoj3 scaffold_6540:27812506-27812608 + CTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTCACAACAAT--TTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGGTACGAGGATTTGGA
droGri2 scaffold_15074:1256125-1256227 + GTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAAACTCTCAACAAT--TTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGATCTGGA

dme-mir-1011 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:16679012-16679095 - ATTCTGACCGTGCACGTGAGTTTTTGAGCCAGGAATAT--------AGTTC----T-------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAA
droSim1 chr3R:4780974-4781057 + ATTCTGACCGTGCACGTGAGTTTTTGAGCCAGGAATAT--------AGTTC----T-------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAA
droSec1 super_27:54817-54900 + ATTCTGACCGTGCACGTGAGTTTTTGAGCCAGGAATAT--------AGTTC----T-------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAA
droYak2 chr3R:5477803-5477886 - ATTCTGACCGTGCATGTGAGTTTTTGAGCCAGGAATAT--------AATTC----T-------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAA
droEre2 scaffold_4770:4975828-4975911 + ATTCTGACCGTCCACGTGAGTTTTTGAGCCATGAATAT--------AATTC----T-------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAA
droAna3 scaffold_13340:7952070-7952154 - GTGGTGACGGTGCATGTGAGTCTTTGAACCAGGAATAT--------AATTT----G-------TATATATTGGTTCAAATCGCTCGTAGAATCCTCCCTGGCAA
dp4 chr2:12756663-12756757 + ATTGTGACGATGCATGTGAGATTTTGAATCTAATATAT--------AATATAATCCGTACGTGTAT-ATATGGTTCAAATTACTCGTAGAACCCTCCCTGGCAA
droPer1 super_0:7702112-7702205 - ATTGTGACGATGCATGTGAGATTTTGAATCTAATATAT--------AATATAATCT-TACATGTAT-ATATGGTTCAAATAACTCGTAGAATCCTCCCTGGCAA
droWil1 scaffold_181108:2184466-2184552 + ATTCTGACCGTACATGTGAGTCTTTGAATCAGGAATAT--------ATTATCA--T-------TATATATTGGTTCGAAATGCTCGTAGAATCCACCTTGGCAA
droVir3 scaffold_13047:12031331-12031423 + ATTGTCACGGTGCATGTGAGTCATTGAACCAGGAATATATGTATGTAATTC----T-------TATATATTGGTTCAAATTTCTCGCAGAATCCGCCCTGGCAA
droMoj3 scaffold_6540:29750589-29750676 - ATTGTGACAGTGCATGTGAGTCTTTGAGCCAGGAATAT--------ATGTTCATCT-------TAT-TATTGGTTCAAATCTCTCGTAGAATCCTCCCTGGCAA
droGri2 scaffold_14830:1201859-1201943 + ATTGTCACTGAGCATGTGAGTCTTTGAGCCAGGAATAT--------AATTG----T-------TATATATTGGTTCAAACAACTCGTAGAATCCGCCCTGGCAA

dme-mir-1012 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:22687056-22687144 - A--AATCCAAAAGAACGGTGGGTAGAACTTT-GATTAATATTGCTTGAAAA-ATATTAGTC-----------AAAGA----------------------------------------TTT-------------TCCCCATAGATTTATCAATTTCGG
droSim1 chr3R:22517515-22517602 - T--AATCCAAAAGAACGGTGGGTAGAACTTT-GATTAATATTGCTTGA-GA-ATATTAGTC-----------AAAGA----------------------------------------TTT-------------TCCCCATAGATTTATCAATTTCGG
droSec1 super_13:1460550-1460637 - T--AATCCAAAGGAACGGTGGGTAGAACTTT-GATTAATATTGCTTGA-GA-ATATTAGTC-----------AAAGA----------------------------------------TTT-------------TCCCCATAGATTTATCAATTTCGG
droYak2 chr3R:23804845-23804934 + C--AATCCAAAAGAACGGTGGGTAGAACTTT-GATTAATATTGCTTGCAAG-ATATTAGTC-----------AAAGG----------------------------------------T------------TTTTCCCCATAGATTTATCAATTTCGG
droEre2 scaffold_4820:5353889-5353978 + A--AATCCAAAAGAACGGTGGGTAAATCTTT-GATTAGTATTGGTTTCAAT-ATATTAGTC-----------AAATG----------------------------------------T------------TTTTCCCACTAGATTTATCAATCTTGG
droAna3 scaffold_13340:16646757-16646843 + C--GATATAAAAAAGCGGTAGGT-----TTC-AACCAA-ATTTCCTTTGAGAGT-TCAGTT-----------AA------CTTTATATA------------------------------T-------------TCTTTTTAGCTTCACTAACTTCGG
dp4 chr2:4781321-4781418 + A--AATAATTCAGAGCGGTGGGTAGTCTCTC-ATATATAGTTATAAAA-GA-AC-----------GAACACCAGTGGTTAAGCAATGCA------------------------------T-------------TTCTTGTAGATTCATCAATTTCGG
droPer1 super_19:478308-478405 + A--AATAATTCAGAGCGGTGGGTAGTCTCTC-ATATATAGTTATAAAA-GA-AC-----------GAACACCAGTGGTAAAGCAATGCA------------------------------T-------------TTCTTGTAGATTCATCAATTTCGG
droWil1 scaffold_181130:2629008-2629094 + C--AATTTGTCAGAACGGTATGG---------------TAGTGCAAGAAAG-CCGAAATTC-----------AAAA-----------------------------------------ACACCCTAATTGTAACAATTTGCAGATTTGTCAACTTTGG
droVir3 scaffold_13047:12018101-12018191 - C--GATCTAAAGAAACGGTACGGATT--GTT-TATTTAAA-TGCTTTA-------------------------------------TATA----------------TTTATCTATAA-GCTATCT------TTTTGTTTGCAGTTTCATTAACTTTGG
droMoj3 scaffold_6540:29763927-29764041 + C--GATTTAAAAAAACGGTGTGTAAATATGG-ATTATTATTTATAAAT-TA-TC-----------GAAAACTTAACTTCTAA---TGTT----------------TTTATATTTAT-ATTTTCA------ACATACTCTCAGTTTCATCAACTTCGG
droGri2 scaffold_14624:2192647-2192787 - ATTGATATCAAGAAGCGGTACGTTCTACATTTGGT-TGAACTATTCTT-GA-ACTTGAGCCGAAAAAACTTTAGCTGTA-TTTTAAACATTCTTTTTCAATCTCTTTTGTGTGTGTGT------------TTTTATTTGCAGTTTCATTAACTTTGG

dme-mir-1013 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:26617343-26617433 - CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAAT------------AAAAGTA-----T-GCCGAACTCGC-------AGGCGACGGATGCGCGA
droSim1 chr3R:26257486-26257576 - CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAAT------------AAAAGTA-----T-GCCGAACTCGC-------AGGCGACGGATGCGCGA
droSec1 super_4:5435200-5435290 - CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAAT------------AAAAGTT-----T-GCCGAACTCGC-------AGGCGACGGATGCGCGA
droYak2 chr3R:27538983-27539073 - CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATTGGGACGGCCGTTAAT------------AAAAGTA-----T-GCCGAACTCGC-------AGGCGACGGATGCGCGA
droEre2 scaffold_4820:1381504-1381594 + CACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATTGGAGCGGCCGTTAAT------------AAAAGTA-----T-GCCGAACTCGC-------AGGCGACGGATGCGCGA
droAna3 scaffold_12911:4366271-4366356 + CACTGTGCTGGAGAGGTAATCTTTGAATAATTATCTGTGAGTTGTGGCATCTAAT------------GATTGT-----------TATCTTCC-------AGACGTCGCATGCGTGA
dp4 chr2:577090-577184 + CACTGTGCTGGAGCGGTAAGT----------CCATGAATTGCATCCCCCTTTGATTATTCTTTAATCTGG---AAATCCC-TGTGATCCCAT-------AGACGACGGATGCGCGA
droPer1 super_7:3361274-3361368 + CACTGTGCTGGAGCGGTAAGT----------CCATGAATTGCATCCCCCTTTGATTATTCTTTAATCTGG---AAATCCC-TGTGATCCCAT-------AGACGACGGATGCGCGA
droWil1 scaffold_181130:10168431-10168520 - AACTGTATTAGAAAGGTATAATGAATAAACCAATTTGAATAG-CAAACCATTAAA------------TCAATTT-----C-CTTTTTTGTCT-------AGACGACGTATGCGTGA
droVir3 scaffold_13047:11434928-11435028 - CACAGTGCTGGAGAGGTGGGT-GCATCCAC---------ATCAGCTGCT--TGATAACCATTTGT--AAATGTAAATCCTCCTTTAACTCG-TTTGAACAGGCGACGCATGCGCGA
droMoj3 scaffold_6540:30312688-30312787 + CACAGTGCTGGAGAGGTGGGA----------GCATTGATTTCACCACCCATAAG--ACACATTCT--CACAGTTTTTCTTGCT-TAATTCC-TTTGTACAGGCGGCGCATGCGCGA
droGri2 scaffold_14624:1473562-1473665 - CACAGTGCTGGAAAGGTGATTCAAAT-----CCATAAGCCACAATCTTCTT-AAATATTATTTTCGCTAA---TGCT--A-TTTGTACTCGCTTTGATTAGGCGTCGCATGCGGGA

dme-mir-1014 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:27579231-27579328 - TGGCCTTTTCTCAAGGTATAATGGAAATAGATTTTAAT------CGCAGGC--------------GCGTCAGTGGT---------------TGA--ATTAAAATTCATTTTCATTTGCAGTTACTGGATACAACA
droSim1 chr3R:27196220-27196317 - TGGCCTTCTCCCAAGGTATAATGGAAATAGATTTTAAT------CGCTGGC--------------GCGTCAGTGGT---------------TGA--ATTAAAATTCATTTTCATTTGCAGTTACCGGATACAACA
droSec1 super_31:233822-233919 - TGGCCTTCTCCCAAGGTATAATGGAAATAGATTTTAAT------CGCTGGC--------------GCGTCAGTGGT---------------TGA--ATTAAAATTCATTTTCATTTGCAGTTACCGGATACAACA
droYak2 chr3R:28513868-28513965 - TGGCCTTTTCCCAAGGTATAATGGAAATAGATTTTAAT------CGCAGGC--------------GCGTCAGTGGT---------------TGA--ATTAAAATTCATTTTCATTTGCAGTCACCGGATACAACA
droEre2 scaffold_4820:396401-396498 + TGGCCTTTTCGCAAGGTATAATGGAAATAGATTTTAAT------CGCAGGC--------------GCGTCAGTGGT---------------TGA--ATTAAAATTCATTTTCATTTGCAGTCACCGGATACAACA
droAna3 scaffold_12911:3510618-3510715 + TGGCATTCTCCCAAGGTATAATGAAAATTGATTTTAAT------CACACGG--------------ATCGGAGTGGC---------------AAA--ATTAAAATTCATTTTCATTTGCAGTCACGGGATACAATG
dp4 chr2:14711225-14711322 + TGGCCTTCTCCCAAGGTACAATGGAAATAGATTTTAAT------CGGGTTT--------------CGTTTGGCGGT---------------GAA--ATTAAAATTCATTTTCATTTACAGTGACCGGCATCAACA
droPer1 super_0:5703122-5703219 - TGGCCTTCTCCCAAGGTACAATGGAAATAGATTTTAAT------CGTGTTT--------------CGTTTGGCGGT---------------GAA--ATTAAAATTCATTTTCATTTACAGTGACCGGCATCAACA
droWil1 scaffold_181130:8196915-8197021 + TGGCATTTTCTCAAGGTGAAATGAAAATAAATTTTAATTCGGATAGAAAGCTAAT--CTAAT--------TGT-AT---------------TGC--ATTAAAATTCGTTTTCATTTGCAGTATCTGGTCTAAATA
droVir3 Unknown TGGCATTCTCTCAAGGTAT---GTACATATTTTTAAAT-----------------------------------------------------TTA--ACCAGTATTTACTTTTGTTCACAGTGACCGGCATAAATA
droMoj3 scaffold_6540:30646887-30646982 + TTGCCTTCTCTCAAGGTAAG---TGC------TTTGACTTAGCA--AAAGTTATTTACTAGAAGTGTTTCTCTGC----------------------------TTTCGTTTCATCCACAGTGACCGGTGTAAATA
droGri2 scaffold_14624:997050-997159 - TGGCCTTTTCACAGGGTATGCAGAGCTTG-ATTAT--T------TGATTGC--------------TCATTT--TACACATTATAAATAAATTATATATATATATACATATGTTATTGCAGTGACTGGCGTAAATA

dme-mir-1015 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:20164939-20165032 + TCATGGGCTACGACGGTGAGTG-----ATGCTCCAGTTAGCTTGGCTGAGTG-------AGGATTTA------------AGTCCTGGGAC-----ATCTCTCTTGCAGTCAAGATCCTGAAAG
droSim1 chr3R:19998542-19998635 + TCATGGGCTACGACGGTGAGTG-----ATGCTCCAGTTAGCTTGGCTGAGTG-------AGGATTTA------------AGTCCTGGGAC-----ATCTCTCTTGCAGTCAAGATCCTAAAAG
droSec1 super_0:20503496-20503589 + TCATGGGCTACGACGGTGAGTG-----ATGCTCCAGTTAGCTTGTCTGAGTG-------AGACTTTA------------AGTCCTGGGAC-----ATCTCTCTTGCAGTCAAGATCCTAAAAG
droYak2 chr3R:26340571-26340664 - TCATGGGCTACGACGGTGAGTG-----ATGCTCCAGATAGCTTGACTGGGTG-------AGGATTTA------------AGTCCTGGGAC-----ATCTCTCTTGCAGTCAAGATCCTGAAAC
droEre2 scaffold_4820:7895693-7895786 - TCATGGGCTACGACGGTGAGTG-----ATGCTCCAGATAGCTTGGCTGAGTG-------AGGACTTA------------AGTCCTGGGAC-----ATCTCTCTTGCAGTCAAAATCCTAAAAC
droAna3 scaffold_13088:204245-204339 + TCATGGGCTACGACAGTGAGTG-----ATGCTCCAGATAGGTTGGCTTAGGAAGTC------ATTAA------------AGCCCTGGGAT-----GTCTCTCTTGCAGTTAAGATCCTGAAAC
dp4 chr2:18646206-18646298 - TGATGGGCTACGATGGTAAGAG--C---TAGC---------C-----ACACAAATTATTAGTATT----------TCTATTTCTCAAAATATTT-CTTTCTTTTGCAGTCAAGATACTAAAGC
droPer1 super_3:1376406-1376498 - TGATGGGCTACGATGGTAAGAG--C---TAGC---------C-----ACACAAATTATTAGTATT----------TCTATTTCTCAAAATATTC-CTTTCTTTTGCAGTCAAGATCCTAAAGC
droWil1 scaffold_181108:4541725-4541808 - TAATGGGTTATGACAGTAAGTTAGC---TGGTAAAGTTGATTTCT------------------TTTA------------ACTAATGT-GT-----ATATTTACTGTAGTAAGAATTTTAAAGC
droVir3 scaffold_13047:3497490-3497590 + TTGTGGGCTACGAAAGTAAGTA------TTTACTTGATAACTCG------TT-------AAACCTAAAG--TCTGTTAACCACTCTTATAACTATG-CATCTAAACAGTTAAGGTACTAAAGA
droMoj3 scaffold_6540:20508341-20508431 + TAATGGGCTACGATGGTAAATG--CTGATGTTCATGAATATTTATCCAAGTA-------ATTT------------------CTTTACGTT-----GTCTTCTTAACAGTTAAGGTTTTGAAAA
droGri2 scaffold_14906:156637-156731 + TGGTGGGCTATGATAGTGAGTT--G--ATTCTATT---------------GTAATAATCA------AATCGTTTTTGTTATTTTATAAACA---TGCCATTTTAACAGTCAAGATACTCAAGA

dme-mir-1016 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:10120620-10120707 - CTCCAAGCTTTTCCAGTAAGTATAGAGAGGATGTGATTGGTAAAT------TCCAAA----------GTT-----------------CACCTCTCTCCATAC-TTAGTCGTCGAGGGGTTAT
droSim1 chr2R:8883298-8883385 - CTCCAAGCTTTTCCAGTAAGTACAGAGATGATGTAATGCGTAAAT------TCCAAA----------GTT-----------------CACCTCTCTCCATAC-TTAGTCGTCGAGGGGTTAT
droSec1 super_1:7628246-7628333 - CTCCAAGCTTTTCCAGTAAGTATAGAGAGGATGTAATGCGTATAT------TCCAAT----------GTT-----------------CACCTCTCTCCATAC-TTAGTCGTCGAGGGGTTAT
droYak2 chr2R:10057668-10057755 - CTCCAAGCTGTTCCAGTAAGTATAGAGGGGATGTGATGGGTAAAT------TCCAAA----------GTT-----------------CACCTCTCTCCATAC-TTAGTCGTCGAGGGGTTAT
droEre2 scaffold_4845:15723071-15723158 + CTCCAAGCTGTTTCAGTAAGTATAGAGAGGATGTGATGGGCAAAA------TCCAAA----------GTT-----------------CACCTCTCTCCATAC-TTAGTCGTCGAGGGGTTAT
droAna3 scaffold_13266:5804278-5804360 + CTCTAAACTTTTTCAGTGAGTACTTGTAATATA-AATCCATAAA--------TCAAA----------ACT-----------------CACTT-TTTCCA-AC-TTAGTCGCCGTGGTGTGAT
dp4 chr3:17369366-17369470 - CTCAAAGCTCTTCCAGTGAGTACACAATTCAATTCCTCGGCAAGGCTATCGTCTGAAACTAATTTCCCTT-----------------CACTTATCCCTGCCCTGCAGTCGTCGCGGCGTCAT
droPer1 super_31:422912-423016 + TTCAAAGCTCTTCCAGTGAGTACACAATTCAATTCCTCGGCAAGGCTATTGTCTGAAACTAATGTCCCTT-----------------CACTTATCCCTGCCCTGCAGTCGGCGCGGCGTCAT
droWil1 scaffold_180700:1839743-1839828 + TTCCAAATTGTTCCAGTAAGTTAAAA-----TGATCTAAAATCAT------TTCAAA----------T-T----------GATT---CAATAATCTCTTCCA-TTAGTCGACGCGGTGTCAT
droVir3 scaffold_12875:17586457-17586541 + TTCCAAACTATTTCAGTAAGTAGCA------GGTGCTGAGTGCAT------G----A----TTGTCTCTA----TATCTT--------GATT-----ATCTTTGCAGTCGACGCGGGGTTAT
droMoj3 scaffold_6496:11208550-11208642 + TTCCAAGCTGTTTCAGTAAGTAGAGCACGCATTTCCAGTACCCAACTA----------------TTCGTTACTATATCTG--------TACA-----ATTTTTGTAGTCGACGCGGGGTTAT
droGri2 scaffold_15245:14096515-14096602 - TTCCAAACTGTTTCAGTAAGTGGTAACACA-ACTACTATGTTTGT------GC-AAC----------ATT----------TAATGGACAG-T-----ATCTTTGCAGTCGACGGGGAGTTAT

dme-mir-1017 tailed_mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:20314319-20314517 + CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCCGAAAA-TGA--------------------------------------T----CCCTTTC-TCCCCTTTTCCCAACACA--T------------TTGT----------------------------------ATCCC-----ACTTCCTGCGCGTCTTCGTGGATTT-----------------------GTAA------CTGCTTC-AATGG------C--TGGACGGTT-TAGATATCTTCTTCAACA
droSim1 chr3R:20155121-20155319 + CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA-ATA--------------------------------------T----CCCTCTC-TCCCCTTTTCCCGACACT--T------------TTGT----------------------------------AACCC-----ACTTCCTGCACGACTTCATGGATTT-----------------------GTAA------CTGCTTC-AATGG------C--TGGACGGTT-TAGATATCTTCTTCAATA
droSec1 super_0:20650438-20650636 + CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA-ATA--------------------------------------T----CCCTCTC-TCCCCTTTTCCTCACACA--C------------TTGT----------------------------------ATCCC-----ACTTCCTGCGCGACTTCATGGATTT-----------------------GTAA------CTGCTTC-AATGG------C--TGGACGGTT-TAGATATCTTCTTCAACA
droYak2 chr3R:26186848-26187051 - CCGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAAAATA--------------------------------------T----CCCTTTC-CCTCTTTTTTCCAACACATTC------------TTGT----------------------------------ATCCC-----ACTTTTTTTGCGCCTTCTTGGATGT-----------------------GTGA------CTGCTGC-AATGG------CCATGGACTGTT-TAGATATCTTCTTCAATA
droEre2 scaffold_4820:7744417-7744612 - CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA-ATA--------------------------------------T----CCCTTTC---CCCCTTTCCCAACACA--C------------TTGT----------------------------------ATCCC-----ACTTCTCGCGCGAC-TCTTGGACTT-----------------------GTGG------CTGCTTC-ACTGG------C--TGGACTATT-TAGATATCTTCTTCAACA
droAna3 scaffold_13088:356279-356461 + CCGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCTC-------ATCGCCGGCCC-----------TTTCGCGAAAGCTCTACCCAAACTCATCCCCTGAAAACC-------------------------------------------TTTTTTC-C------------CCCCATT--T------------TCTT----------------------------------CCCTT-----ACTGTTTTTGCAC---TTTGGATTT--------------------TATGTGGC-----CTGC------TGG------A--TGGCTTCTT-CAGATATATTTTTCAACA
dp4 chr2:18479367-18479560 - CCGAACCGTATCCGGGTGAGTTTTGTGGAGTT-TAAAGTTAACA-------ATCGCCGACAATC----A--AATTACGCGAAAGCTCTACCCAAACTCATCCCTCACAA-------------------------------------------TTGTTTTCCT-CC---------CCCACCAAA--AATCTCCCTCACCCTGT----------------------------------AAATC-----ACT-------------------------------------------ATGCGGCT---GCTGC------TGGTATTCGGCTTGGACTGTTCCAGATATCTTCTTCAATA
droPer1 super_3:1203012-1203205 - CCGAACCGTATCCGGGTGAGTTTTGTGGAGTT-TAAAGTTTACA-------ATCGCCGACAATC----A--AATTACGCGAAAGCTCTACCCAAACTCATCCCTCACAA-------------------------------------------TTGTTTTCCT-CC---------CCCACCAAA--AATCTCCCTCTCCCTGT----------------------------------AAATC-----ACT-------------------------------------------ATGCGGCT---GCTGC------TGGTATTCGGCTTGGACTGTTCCAGATATCTTCTTCAATA
droWil1 scaffold_181108:4383442-4383643 - CTGAACCATATCCAGGTGAGTTTTGTAGAGTTTTAAAGCTATAA-------ATCGCCGGTAAATAGACGTTAAAGACGCGAAAGCTCTACCCAAACTCAC-CCCGG-AAA------------------------------------------TTTTTTTATT-C-T-CTTTTTTCCCAACAAA--A------------ATAA----------------------------------TGACA-----ATTT-------A---TCTTGGAAAT--------------------TTGGTAA------ACACTTTAAATAA------T--TGTATATAT-TAGATATATTTTTCAATA
droVir3 scaffold_13047:3684405-3684633 + CCGAGCCGTATCCGGGTGAGTTTCGTAGAGTT-TAAAGCTCTTA--CTTTGCTCGCTGGCAC----GC-----CCACGCGAAAGCTCTACCCAAACTCAC--TATGCAAACCCCCAACCCATACCCAAATCCA--------------------------------------------------------------------------------TGCTCCTTGTCTCTCTCTCTCTCTCTTTCTCTC-----TCTCTCT-------------CTCTCTCTCCACTTTTGTTTCATGCTGCAC---TCGC------TGGCTCTTG---TTGAATGTT-CAGACATATTCTTTAATA
droMoj3 scaffold_6540:20694202-20694463 + CCGAGCCCTATCCCGGTGAGTTTCGTAGAGTT-TAAAGCTCACA--CTTTGCTCGCCAACAA----GC-----GCACGCGAAAGCTCTACCCAAACTCAC--TATGAAAATCTATACTCCAAACCCGAATCCAATCTTCGTGGATTCCATCATCGTGTCTCT-CT---------CTCTCTCTC--TCTCTCTC-----------------------------------------------------TCTCTCTGTTTGTCTTTCTGGATCTCTTTCTTTCTTTTGGTATTTCATGCTGCTC---TCGC------TGGCCTTG-A--TCAAATGTT-CAGACATCTTCTTCAACA
droGri2 scaffold_14906:340737-340980 + CGGAACCGTATCCGGGTGAGTTTCGTAGGGTT-TAAAGCAACAAAACTTTGCTCGCCGACAC----GC-----GTACGCGAAAGCTCTACCCAAACTCAC--TATGGAAACC-----------------------------------------CGTATCCCA-AC---------CCCCCAAAT--AATCC-----AACCAATATCCCAATCCTGGCCTGTTCGTTCTCGTGTTCTTTGCTTTTCTC-----TTCTGCTCTTTCTTG-------------------------CCTGCTGCGATTGCTGCTT------GTTTTG-C--TAAAATGTT-TAGACATATTCTTCAATA

dme-mir-2489 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:13609973-13610070 + AGCAATAAGTTAGACGTGAGTATG------GCTATACAAAT---------CATCT-------GGAACGT-------AAGTTCTAATG-----TATGTATTG---TATG-----TTGTATTTGCAGTTTTATGATAGCAAA
droSim1 chr2L:13379253-13379350 + AGCAATAAGTTAGACGTGAGTATG------GCTATACAAAT---------CATCT-------GGAACAT-------ACGTTCTAATG-----CATGTATTG---TATG-----TTGTATTTGCAGTTTTATGATAGCAAA
droSec1 super_16:1746050-1746147 + AGCAATAAGTTAGACGTGAGTATG------GCTATACAAAT---------CATCT-------GGAACAT-------ACGTTCTAATG-----CATGTATTG---TATG-----TTGTATTTGCAGTTTTATGATAGCAAA
droYak2 chr2L:10029706-10029801 + AGCAATAAGTTAGATGTGAGTATG------GCTATTTAAAT---------CAACC-GAAC--GT-ATGT-------ATGTTATATAG-----T-----TTG---CATT-----TTGTATTTGCAGTTTTATGATAGCAAA
droEre2 scaffold_4929:11847836-11847927 - AGCAATAAGTTAGACGTGAGTATG------GCTATCTAAAT---------CAGCC--------GAACGT-------GTATTCTAATG-----TTTG--------CACT-----TTGTATTTGCAGTTTTATGATAGCAAA
droAna3 scaffold_12943:1669999-1670103 + AGCGATAAGTTAGACGTGAGTATT-----GTCTCTGTCAAG---------TGTAT-------GGTACTAATATTTA----ACTAATT-----CTTGTATTAACTTGTT-----TTTAATTTCCAGTTTTATGATAGCAAT
dp4 chr4_group1:1879331-1879430 - AGCGATAAGTTAGACGTGAGTATA------TCTTTGCCATC---------TCTTT-----TTAAAACAA-------TCATTTTCATA-----TACATATAT---ATTT-----TTGTGTGTTTAGTTTTATGATAGCAAC
droPer1 super_5:3326174-3326277 + AGCGATAAGTTAGACGTGAGTATA------TCTTTGCCATC---------TCTTT-----TTAAAATAT----TTTATATTTTTATATATTACATATATTT------------TTTGGTGTTTAGTTTTATGATAGCAAC
droWil1 scaffold_180772:852551-852648 - AGCGATAAGTTAGATGTGAGTATA------T-TATATCTTTTGTCCCATT----------TTGGAATAT-------GTTTTTGAATA-----CCTT--------TTCT-----TTGGGATTTCAGTTTTATGATAGCAAC
droVir3 scaffold_12723:5236355-5236448 - AGTGATAAGTTAGACGTGAGTATT------ATCAACATATATGAATTATT----------T-TAAAATA-------ATAATC-------------GAAT-T---TAAT-----TTGTTATCCCAGTTTTATGATAGCAAC
droMoj3 scaffold_6500:16444108-16444197 + AGTGATAAGTTAGACGTGAGTATTACAGAGGCCCTATCAA------------------------AAT-A-------TC------ATT-----CGTGTATCT---AATATAATAT----TTTTCAGTTTTATGATAACAAC
droGri2 scaffold_15126:8263493-8263587 - AGTGATAAGTTAGACGTGAGTATTT-----ATTAAC--------------TTCATTCAAC--GTAATAT-------ACATACTAAAA-----TATGAA--------TACATCAT----TTTGCAGTCTTATGATAGCAAC

dme-mir-2494 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:12444473-12444619 + GGC--AACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATT------------G-GGAAT-----------------AACCTTCAAAAGCTGCAACTT-AAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAA--CCTATTCGGACC
droSim1 chr3R:9022585-9022731 - GGC--AACCTGCCATTGTGCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATT------------G-GGAAT-----------------AACCTTCAAAAGCTGCAACTT-AAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAA--CCTATTCGGACC
droSec1 super_12:1702814-1702963 - GGC--ATCCTGCCATTGTGCATCTTCCGACCGGCGATCAGTAAGTGCACCATAGT-----A---A--ATGGAAT-----------------AACCTTCAAAATCTGCAACTT-AAATATTCCCAGTAATGTCCGCTTACAAGGAGCCCCTGGTTGGATGGGTGGACAA--CCTATTCGGACC
droYak2 chr3R:11948210-11948356 - GGC--GACCTGCCACTGTGCATCTTCCGCCCGGCGATCAGTAAGTGCACCAGATT------------G-GGATT-----------------AACCTTCAAAAGCTGCAGCTT-AACTATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGATGGCTGGGTGGACAA--CCTATTCGGACC
droEre2 scaffold_4770:9192977-9193123 - GGC--AACCTGCCCCTGTGCATCTTCCGCCCGGCGATCAGTAAGTGCAACAGATT------------G-GGAGT-----------------AACCGTCAAAAGCTACAACTT-CAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGCTGGATAGACAA--CCTATTCGGACC
droAna3 scaffold_13340:7435217-7435360 - GGC--AGCCTGCCAGTCAGCATTTATCGGCCTTCCATAAGTAAGTACTATATACG------------T-CCTGC-----------------TGTCTTATAAAATTGTTATTT----TTTTTCTAGTAATTGCCACATATAAGGAGCCATTAGTTGGATGGGTGGATAA--CCTTTATGGACC
dp4 chr2:5294042-5294203 - GGC--GACCTGCCCGTGTGCATTTTTCGGCCGGCCATTAGTAAGTTTTTCC----TTAGAT---G--AT-GCAAGGCCTTGGATGGAACTG-----AAACATTGTGTAACAT-GACTCTCCACAGTCGTGCCCACCTACCAGGAGCCCGTCGTTGGTTGGACTGACAA--TCTGTACGGGCC
droPer1 super_19:1006170-1006331 - GGC--GACCTGCCCGTGTGCATTTTTCGGCCGGCCATTAGTAAGTTTTTCC----TTAGAT---G--AT-GCAAGGCCTTGGATGGAACTG-----AAACATTGTGTAACAT-GACTCTCCACAGTCGTGCCCACCTACAAGGAGCCCGTCGTTGGTTGGACTGACAA--TCTGTACGGGCC
droWil1 scaffold_181108:4575766-4575914 - GGC--AATCTACCAATCTGTATTTTTCGCCCTGGTGTCAGTAAGTCCTCAAAATT------------C------------AACTTGTAACT-----ATAGCTGTTAAATTTTCTCCTTATTATAGTTATTGCCACCGCCAAGGAGCCAGTTTCGGGTTGGATTGACAA--TTTATATGGACC
droVir3 scaffold_13047:18500357-18500519 - ACAAAAAGCTGCCCATTATCGTCACAAGGCCTTCCATCGGTATGTAGGTCC----CGCT-A---A--CT-GGTTGGGCTTGACAAGTAACC-----ATATTTATTTTTTTTT-TTGTTCGCCCAGTGACGGCGGCCATACACGAGCCCATGCCCGGATGGATTGAGGG--CGTGAACGGACC
droMoj3 scaffold_6496:22335084-22335230 - GCC--GGTCTGCCGGCAGCCATAGTTAGGCCATCCATAGGTGAGTC----GAAGTATAAATCTAATTG-AG-AA-----------------GGCCCTAACTGACTGCTATT----------ACAGTATACGGTACACTGGAGCACCCCATGAAGGGCTGGGTGGGCAATGCCAACTCGGGTC
droGri2 scaffold_15074:333824-333971 - AGC--GGTTTGCCCATAAGCATCTTTCGCCCGGGTGTCAGTAAGTTCGTCGAATCATTAAGATCA----------------GTAAGAA---GATGTTCTCAGTCT-----------CCATTTCAGTTATTGGCAGCTACAAGGACCCCCTCCCGGGCTGGGTTGACAA--TCTATATGGTCC

dme-mir-2497 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:16678235-16678332 + GATAAGCACGTCATCGTAAGCATTGCAAAATG--TAGTTGTTAAA-------TTCGC--------------TCTTCAATCATTA-ACAACATTT-----ACAATGTTTGCAGGCTGTCAACGTTGAT
droSim1 chr2L:16366233-16366322 + GATAAGCACGTCATCGTAAGCATTGCAAAATA--TAGTTGTTAAA-------TTCGC--------------TCTTCAATTATTT---------A-----CTATTGATTGCAGGCTGTCAACGTTGAT
droSec1 super_7:325110-325199 + GATAAGCATGTTATCGTAAGCATTGCAAAATA--TAGTTCTTAAA-------TTCGC--------------TCTTCAATTATTT---------A-----CTATTGATTGCAGGCTGTCAACGTTGAT
droYak2 chr2R:4424626-4424717 - GATAAGCACGTCATCGTAAGCTTTGCTATATATGTAGATGTGAAT-------TTCGA--------------GCTTCAATTCTTT---------T-----CTATTCTCTTCAGGCTGTCAATGTTAAT
droEre2 scaffold_4845:19748460-19748547 + GATAAGCACGTTATTGTAAGCTGCGCC--ATA--TAGTTCGTAAA-------TTCGA--------------GCTTCAATTATGT---------T-----CTATTCTCTCCAGGCTGTCAATGTTAAT
droAna3 scaffold_12916:15881689-15881781 - GAAAAGCAAGTGATTGTAAGA--TGTAAAC---------------TCTTAGACCCTCCTAACTGCTACAA---GCTAATACTTT---------T-----GCTTTGAATCCAGGCTGTTAACGTGAAC
dp4 chr4_group3:8422191-8422279 + CAAAAGCAGCTGATAGTGAGTACTGGAAGC---------------ATTTATAT---------CTCTGGAAAGCACTAATTCTTT---------T-----TTTAATCTTCTAGGCTGTCGAATTAAAT
droPer1 super_1:9873274-9873362 + CAAAAGCAGCTGATAGTGAGTACTGGAAGC---------------ATTTATAT---------CTCTGGAAAGCACTAATTCTTT---------T-----TTGAATCTTCTAGGCTGTCGAATTAAAT
droWil1 scaffold_181132:892502-892596 - GACAAAGAAGTGATTGTAGGTGTCAATGA---------------T-------TTCA----------AACTAACATCAATTTTTTATTAACGTCTTTATTTTTTCCTATTCAGGCTATCAATGTCAAT
droVir3 Unknown -------------------------------------------------------------------------------------------------------------------------------
droMoj3 Unknown -------------------------------------------------------------------------------------------------------------------------------
droGri2 Unknown -------------------------------------------------------------------------------------------------------------------------------

dme-mir-2500 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:16991543-16991639 - AAGAACTTTCTGCAGGTAAGGA----------------ACACACATATACAATACCG-------TTTGA-------------ATTTCAAATAATCAGGA------TTTTGTGTGTGGACCTCAGATCATGTTCCAGGCC
droSim1 chr3L:16333274-16333368 - AAGAACTTTCTGCAGGTAAGGA----------------ACACACAT--ACAGTCCCT-------GTTGA-------------ATTTCAAATAATCAGGA------TTTTGTGTGTGGACCTCAGATCATGTTCCAGGCC
droSec1 super_0:9052557-9052651 - AAGAACTTTCTGCAGGTAAGGA----------------ACACACAT--ACAATCCCT-------GTTGA-------------ATATTAAATAATCAGGA------TTTTGTGTGTGGACCTCAGATCATGTTCCAGGCC
droYak2 chr3L:17082640-17082734 + AAGAACTTTCTACAGGTCAGGA----------------TCACACAT--ACATTCCCT-------GTAGA-------------ATTTAATTTAATCAGGA------ATTTATGTGTGAACTTTAGATCATGTTCCAGGCC
droEre2 scaffold_4784:16851458-16851552 + AAGAATTTTCTGCAGGTAAGGA----------------TCGCACAT--ACAATCCCT-------GTCGC-------------ATTTTATGTAATCAGGA------TTTTGCGTGTGAACTTTAGATCATGTTCCAGGCC
droAna3 scaffold_13337:13625775-13625865 + AAAAACTTTCTGCAGGTGAGCA----------------GTTCA----------------AGCTTAGCGAGGTCTGTTCCAGTT-TCCTAACATTC----------TTCCGCTC-----CTTTAGATCATGTTCCAGGCC
dp4 chrXR_group8:4827167-4827262 - AAGAACTTTTTGCAGGTAAGCC----ATCACC------------AGCA-------TTGAAAGCCATTGA-------------AATGCGTCTAAATAGCAGTCT--CTCTCCTC-----CCACAGATCATGTTCCAGGCC
droPer1 gnl|ti|780630171:515-611 - AAGAACTTTTTGCAGGTAAGCC----ATCACC------------AGCA-------TTGAAAGCCATTGA-------------AATGCGTCTAAATAGCAGTCT--CTCTCCTC-----CCACAGATCATGTTCCAGGCC
droWil1 scaffold_180955:197087-197182 - AAAAACTTTTTACAGGTAAGCC----------------ACAACGAT--GAATGGCTCGAGGGAGATTGA-------------ACTCTATGTAATC-------TCTTCACTTTC-----TTGCAGATAATGTTTCAGGCT
droVir3 scaffold_13049:10166522-10166615 + AAGAACTTTCTGCAGGTGCGTT----CCCCCTGGCTGATCACATAT--GTCGTTT---------------------------ATACTATATTTT-CGCC------TTTTGCTC-----CTGCAGATCATGTTCCAGGCC
droMoj3 scaffold_6680:10629193-10629280 - AAGAACTTTCTCCAGGTGAGTT----ACGG-------TTCAC------ATAATTC----------TCGT-------------ATTCCAAATAACGAAAT------CTTTGTCC-----TTGCAGATCATGTTCCAGGCC
droGri2 scaffold_15110:9071735-9071831 - AAGAACTTGCTGCAGGTGAGATTTTGATCG-------ATTAA------TTAAGTC----------TGG--------CTCTCTTTGCTAAATATGCC--A--CT--TTTTGTGT-----TGGCAGATCATGTTCCAGGCC

dme-mir-2501 tailed_mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:8104192-8104292 + GGTGGTAAAAGTGGAGTAAGTTTGGAGTG----CCTGGGCTAAGAACTTCCATT---------------------------------------------------------CTGAAACTTAACTCTTGCAATCAAACTTTC------------------------------------------------------------------TTTCAGAACCAAGCGTGGCAG
droSim1 chr3L:7572156-7572239 + GGTGGTAAAAGTGGAGTAAGTTTGGAGTC----CCTGGGCTAAGAACTTCCATT--------------------------------------------------------------------------CAATCAAACTTTC------------------------------------------------------------------TTTCAGAACCAAGCGTGGCAG
droSec1 super_0:391632-391715 + GGTGGTAAAAGTGGAGTAAGTTTGGAGTC----CCTGGGCTAAGAACTTCCATT--------------------------------------------------------------------------GAAGCAAACTTTC------------------------------------------------------------------TTTTAGAACCAAGCGTGGTAG
droYak2 chr3L:8691884-8691979 + CGTTGTAAAAGTGGAGTAAGTTTGCGA----------------------------------------------------------------CTTACGTTC-CTTTTATATACCG-ACATACCGTCTTACAACCAAACTTTC------------------------------------------------------------------TTTCAGAACTAAGCGCGGCAG
droEre2 scaffold_4784:3260723-3260819 - GGTGGTAAAAGTGGAGTAAGCTTGCAA----------------------------------------------------------------CTTGAGTTATATCTTTTATCCCG-CTATACTTACTTACAATCAAACTTTC------------------------------------------------------------------TCGCAGAACCAAGCGCGGCAG
droAna3 scaffold_13337:13543116-13543232 - AGTGGTTAAAGTGGAGTAAGTGGCGT----------------------TTAAGGG------AGTGATG----------G---ATAGATGGACCTGAGTCT-TTTTTAGT---TGTTCTCTTTCTCTAACATTCATAATCCG------------------------------------------------------------------TTTCAGAAACAAACGTGGCCG
dp4 chrXR_group3a:1131777-1131868 + GGTGGTCAAAGTAGAGTAAGTGATCC----------------------CCACCGA------ACTATTGTGACTTTACGC------T-------------C-TAATTGGG----------------------TACATTTTTT------------------------------------------------------------------GTGCAGAACCAAGCGTGGCCG
droPer1 super_23:1158678-1158769 + GGTGGTCAAAGTAGAGTAAGTGATCC----------------------CCACCGA------ACTATTGTGGCTTTACGC------T-------------C-TAATTGGG----------------------TACATTTTTT------------------------------------------------------------------GTGCAGAACCAAGCGTGGCCG
droWil1 scaffold_180727:72451-72556 + AGTGGTCAAAGTACAGTAAGTACATGG-----------AATGACCAATCCAATTAACTATA--TA-TGTACATATATGT------T-------------A-AATCCAAC----------------------CATCTCTTTT------------------------------------------------------------------ATCCAGAAATAGACGTGGCCG
droVir3 scaffold_13049:9356761-9356852 - GGTTGTCAAAGTTGAGTAAGTTTCTA----------------------TCAAC----AATAACTA-AGCTTGGTTATGG------TA------------A-TAATTTG------------------------ACACTTTTC------------------------------------------------------------------TGTTAGAAATAAGCGCGGTCG
droMoj3 scaffold_6680:11400964-11401055 + CGTTGTCAAGGTTGAGTAAGTTTGTAGGC----TCTTAACT-----------------------GGCGAAACCAGATGA------T-------------C-TAATTAC-----------------------ACAATTTTCC------------------------------------------------------------------CATTAGAAACAAACGTGGTCG
droGri2 scaffold_15110:6804388-6804550 + CGTTGTCAAAGTCGAGTGAGTAATTTGGCAAAAACTGGCTT-------TTAATG-------------------AGATTACTCC--T-------------C-TTATCAG-----------------------ACAGTTCTCCAAACTCCTCATTTATCTTAGAGCAAATATCAGATTTAAAAATAAAATTATTTTTTCTTCTTTTGATCTTCAGAAATAAGCGCGGTCG

dme-mir-2535b mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:21169287-21169387 - ACGTACATCACTAAGGTAAGTGACTATGCCG-----GGATTGTGGTTAT---TGAACTTAGCG----TCTCCACT--CACGGC-ATTT--CAT------------TCACTTGCAGTACATCACCGCCGAG
droSim1 chrX:12918307-12918407 + ACGTACATCACCAAGGTAAGTGACTATGCCG-----GGATTGTGGTTAT---TATACTTAGCG----TCTCCACT--CACGGC-ATTT--CAT------------TCACTTGCAGTACATCACCGCCGAG
droSec1 super_8:3476294-3476394 - ACGTACATCACCAAGGTAAGTGACTATGCCG-----GGATTGTGGTTAT---TATACTTAGAG----TCTCCACT--CACGGC-ATTT--CAT------------TCACTTGCAGTACATCACCGCCGAG
droYak2 chrX:20345010-20345110 - ACGTACATCACCAAGGTAAGTGACAATGCCG-----GGATTGTGGTTAT---TGAAAATACCT----TCTCCACT--CACGGC-ATTA--TAT------------TCACTTGCAGTACATCACCGCCGAG
droEre2 scaffold_4690:17698644-17698744 - ACGTACATCACCAAGGTAAGTGACAGTGCCG-----GGATTGTGGTTAT---TAAAAATACCT----TCTCCACT--CACGGC-ATTT--CAT------------TCACTTGCAGTACATCACCGCCGAG
droAna3 scaffold_13334:1053972-1054064 + TCTGGCTACCGATTGGTGAGTTATCG----A-----CATTATCGATTTCTATCGATTT----------------------------CTATCGAGTTAAAAAAATCCCCTTTCCAGATCTGTGTCAAACGC
dp4 chrXL_group1a:9058690-9058790 + ACGTACATCACAAAGGTAAGTGGCTATGCCGCGACGGGATTG------------AACCTCTCATCTCTCACCTCT--CACGGC-ATAT--CAA------------TCACTTGCAGTACATCACCGCCGAG
droPer1 super_15:1452144-1452244 + ACGTACATCACAAAGGTAAGTGGCTATGCCGCGACGGGATTG------------AACCTCTCATCTCTCACCTCT--CACGGC-ATAT--CAA------------TCACTTGCAGTACATCACCGCCGAG
droWil1 Unknown ACTTACATTACCAAGGTGAGT----------------------------------------------------------------TTT--GTT------------TTTCTTACAGTACATTACATCGGAG
droVir3 Unknown ACGTGCATTACCAAGGTAAGC-----------------------------------------------CTCTTCT--CACGAC-ATCCCTTAA------------TCCCTTGCAGTACGTTGCCAACGAA
droMoj3 Unknown ACATGCATAACCAGGGTAAGTGCTCA-GCTG-----CTtTTtTttTttT---tgttTTTTttT-------------------T-tTTT--CGT------------CGCCTTACAGTACATCTCCAAGGAG
droGri2 scaffold_15203:11132616-11132716 + ACCTACATTACTAAGGTATGT------TCGA-----TGATTTTGGTTTTTTTTGGCTTTACTT----TCACCGTTTACACGACAATTT--CAT------------CCTTTTGCAGTACGTGACCAGTGAG

dme-mir-3641 tailed_mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:2065104-2065202 + GGCGAACTTTTTAATGTGAGTGTCCTGTTT------------ACAGCTGGTATATTTT---------TCGAAA---AGCC----------CTCTAAAC---------TGG------------T---CACTTCCAC-TCTACAGATCTATAACTACATA
droSim1 chrX:1441441-1441539 + GGCGAACTGTTCAATGTGAGTTTCCTACTT------------ACAGCTGGTATATTTC---------TCGAAC---AGTC----------CTCTAAAC---------TGG------------T---CCCTTCCGC-TCCGCAGATCTACAACTACATA
droSec1 super_10:1848730-1848828 + GGCGAACTGTTCAATGTGAGTTTCCTACTT------------ACAGCTGGTATATTTC---------GCGAAC---AGTC----------CTCTAAAC---------TGG------------T---CCCTTCCGC-TCCGCAGATCTACAACTACATA
droYak2 chrX:6259202-6259289 - GGCGAACTCTTCAATGTGAGTTTCCTATGT------------TTCGCATGTACATAT---------------------------------ATCTAAAT---------TGG------------T---TCCTTCTCC-TCTGCAGATCTACAACTACATA
droEre2 scaffold_4644:2028284-2028382 + GGCGAACTGTTCAATGTGAGTATCCTGTGA------------TCCGCTTGTACTTATC---------TCGAGC---AGTT----------CTCTAAAC---------TGG------------T---CCCTGATCC-TCTGCAGATCTACAACTACATA
droAna3 scaffold_13117:1070684-1070773 - GGCGAGCTCTTCAACGTAAGTTTCCCCGCT------------TAAAC------------GCCTAAGA-----T----TTT----------CCCTAAAC---------CGT------------T---GCTGTTCTG-TCTCTAGATCTACAACTATATC
dp4 chrXL_group1e:3790116-3790235 - GGCGAGTTGTTCAACGTAAGTTCCAGCATT------------TCAGCCT---------CGAATTCGG-----C---AGTCACTTGATAC---------TCTCCCACCTCCCTCTCCCTCTGCCTCTCCATCATCCTCTTCCAGATCTACAACTACATC
droPer1 super_17:723995-724114 - GGCGAGTTGTTCAACGTAAGTTCCAGCATT------------TCAGCCT---------CGAATTCGG-----C---AGTCACTTAATAC---------TCTCCCACCTCCCTCTCCCTCTGCCTCTCCATCATCCTCTTCCAGATCTACAACTACATC
droWil1 scaffold_181096:7421152-7421244 - GGCGAGCTTTTCAACGTGAGTTACTCAGTC------------CA----A---------AGAAACTGG-----TTTTAGTTA--TGAT-----------TAACTC-----A------------C----TTTTTTTT-GTTATAGATTTACAACTATATA
droVir3 scaffold_12928:7113520-7113613 + GGCGAGTTGTTCAACGTAAGTCGATGACCTCGCG--------T------------------ATGTGGGCGTAC---TTTC----------A------CTGACGC---CTG------------C---CTCTTTGTC-TATTCAGATTTACAACTACATT
droMoj3 scaffold_6328:2787435-2787524 + GGGGAGTTGTTCAACGTAAATTCT--ATTC------------TCACTTAACACA----AGAATCAAA-----T----CTC---------------ATC---------TAA------------T---T-TTTCGCT-CGTTTAGATTTACAACTACATT
droGri2 scaffold_14853:3491672-3491772 - GGAGAGTTGTTTAATGTAAGCTAA--ACTTCGCCCATCCTCTCCAGCTG-----------------------------TT---TGGTTAACTTTCAAC---------TGT------------TTGTC-CTCCATC-TCCTCAGATTTACAACTACATT

dme-mir-3642 tailed_mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:11622590-11622695 + ATGGATGACGTCAAGGTGAGTG--------------GGTCGCACGGAGCGTCATT-------------------------TGGAAT-------------------TC------------CCATGGC-------TG------ACGAA-------------------ACGTTCACTCTGCTCTTCTCGATTACAGGACATCATCAGTAAA
droSim1 chr3L:10995092-10995212 + ATGGATGACGTCAAGGTGAGTG--------------AGGCGCACGGAGCGCCATT-------------------------TGGAAT-------------------TC------------CCCTGGC-------TG------AGAAAACGCTA--AGAACTTCATTACGCTCACTCTGTTATTCTCGATTACAGGACATCATCAGTAAA
droSec1 super_0:3809862-3809984 + ATGGATGACGTCAAGGTGAGTG--------------AGGCGCACGGAGCGTCATT-------------------------TGGAAT-------------------TC------------CCCTGGC-------TG------AGAAAACGCTA--AGAACTTCATTACGCTCACTCTGTTCTTCTCGATTACAGGACATCATCAGTAAA
droYak2 chr3L:11651195-11651318 + ATGGATGACGTCAAGGTGAGTG--------------CGGCGCACGAACCGCCATT-------------------------TGGAAT-------------------TC------------CCCTGGC-------TG------ACGAAACGCTAA-AGAACTTCATTACGCTCACTCTGCTCTTTTCAATTACAGGACATAATCAGTAAA
droEre2 scaffold_4784:11607138-11607238 + ATGGATGACGTCAAGGTGAGTG--------------AGGCGCACGGACCGCCATT-------------------------TCGAAT-------------------TC------------CCCTGTC-------TG------------------------------ACGCTCACTCTGCTCTTTTCAATTACAGGACATAATCAGTAAA
droAna3 scaffold_13337:5894397-5894534 + ATGGACGACGTCAAGGTGAGTAAGAAGTGGTGGAGGGGGTGT------------------TGCAG------CAAAGTGC-TGGAAC-------------------TT------------AATAAGC-------TA------ATGAAACGCTAA-AGAACTTCATTACCCTTTCTTTGCTCTTTTCAATTACAGGACATAATCAGTAAA
dp4 chrXR_group6:10064193-10064317 - ATGGACGACGTGAAGGTGAGTG--------------GGGCGC------------------TGCAC------GTGCCCGCTTGAGAC-------------------TT------------GCTTGGC-------AA------TATCAACGCTAA-AGAACTTCATTACGCTCATTATGCTCTTCTCCATTGCAGGACATAATCAGTAAA
droPer1 super_61:344655-344779 - ATGGACGACGTGAAGGTGAGTG--------------GGGCGC------------------TGCAC------GTGTCCGCTTGAGAC-------------------TT------------GCTTGGC-------AA------TATCAACGCTAA-AGAACTTCATTACGCTCATTATGCTCTTCTCCGTTGCAGGACATAATCAGTAAA
droWil1 scaffold_180698:2114822-2114981 + ATGGACGACGTAAAGGTGAGTG--------------TAACA--------------------GCACTAGTGTGTGTACGCCTGTGC-GTGTGTGTGTGTGTGTGTGCGTATATTT-----TCATGTA-------ATTATCCAACG-ACCGCTAATAGAATTTCCTTACACTTACTTTGCTCTTCTCACTTGCAGGACATAATCAGTAAA
droVir3 scaffold_13049:23825799-23825928 + ATGAATGATGTCAAGGTGAGTG--------------CGCGGCGCGGCGGCTGCTT-----------------------CTTAATAA-------------------TT--------GATG-------AATTGACAA------TCTTATCGTTAA-AGAATTTCCTTACTCTCTGTCTGCTCTTATCTCTTACAGGACATAATCAGTAAA
droMoj3 scaffold_6680:18448682-18448807 + ATGAACGACGTGAAGGTGAGTG--------------AGCGGAATG-----C---------TGAAC----------------------------------------TGAATTTATTGATG-------AATTGACAA------TCTTATCGTTAA-AGAATTTCATTACACTCTCCTTGCTCTTCTCTCTTGCAGGACATAATCAGTAAA
droGri2 scaffold_15110:13832957-13833097 - ATGAGCGATGTAAAGGTGAGTT--------------CGGA-------GCGTTATTCTAGTTGATT------GTGTTTAATTTTTAT-------------------AT------------ATTTGGCAATTGTTAA------TCAATTCGTTAA-AGAATTTCCT--CACTCACTCTGCTCTTATCTCTTCCAGGACATAATCAGTAAA

dme-mir-3643 tailed_mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:13653883-13653980 - GAATCCAAGCTGAACGTGAGTTT-A--TCTAAATATG-CCCATTTATCAATAG-TCATAC----------TTATTTA-----T-------GC-TCCTTTA--ACTCCTTGCAGAGCTTCGAAAAAGAC
droSim1 chr2R:12393703-12393800 - GAGTCCAAGCTGAACGTGGGTTT-A--TCTAGATACG-CCCATTTATCATTGG-TCATAC----------TTATTTA-----T-------GT-TCCTTTA--ACTCCTTGCAGAGCTTCGAAAAAGAC
droSec1 super_1:11152590-11152687 - GAGTCCAAGCTGAACGTGGGTTT-A--TCTATTTACG-CCCATTTATCATTGG-TCATAC----------TTATTTA-----T-------GT-TCCTTTA--ACGCCTTGCAGAGCTTCGAAAAAGAC
droYak2 chr2R:15527673-15527770 + GAATCCAAGCTGAACGTGGGTTC-A--TCTAGATACT-TCCATATATCAAAAG-CCGTAC----------TTATTTA-----T-------GT-TATTTAA--ACTGCTTGCAGAGCTTCGAAAAAGAC
droEre2 scaffold_4845:7883019-7883116 - GAATCCAAGCTGAACGTGGGTTT-T--TCTAGATACG-CCCATTTATCAATGG-CCCTAC----------TTATTTA-----T-------GC-ATTTTAA--ACTCCTTGCAGAGCTTCGAAAAAGAC
droAna3 scaffold_13266:10531972-10532067 + GAATCCAAGCTGAACGTTAGTTACT--TGTGCA-A---CTCGT------------CCAATCGGTTC-AATAACTAGA-----T-------CC-TCCTTTACATCTCCTTGTAGGGCTTCGAGAAGGAC
dp4 chr3:16466931-16467019 - GAATCCAAGCTGAACGTAAGTGC-TTAGCAA---ATG-TTCACTGAACCTTGAAT----------------CATTGCCTTTG------------------TTCTCGGTTCCAGAGCTTCGAAAAGGAC
droPer1 super_4:295271-295359 + GAATCCAAGCTGAACGTAAGTGC-TTAGCAA---ATG-TTCACTGAACCTTGAAT----------------CATTGCCTTTG------------------TTCTCGGTTCCAGAGCTTCGAAAAGGAC
droWil1 scaffold_181141:4609865-4609965 + GAATCAAAATTGAATGTAAGCTG---------A-AAA------------TTTAATTT---ATATTTTGTTTTCTCCTATTTACATACCACGTGTCCTTCA--CTCAATTACAGAGCTTCGAAAAGGAT
droVir3 scaffold_12875:16919908-16919994 - GAATCCAAACTAAATGTGAGTAT-C--TCCTAA-TCGCCTCAT------------CCAAT----------TCATTTT-----T-------GA-CCCTTTG--CCTACTTTTAGAACTTTGAAAAAGAC
droMoj3 scaffold_6496:11084070-11084155 + GAATCTAAACTAAATGTAGGTAT-A--GTAA---TAG-ATGAGTTTTTCTTTTAT----------------TTTAACC-----------------TTTGG--CCCGCTTGCAGAACTTTGAGAAGGAC
droGri2 scaffold_15245:16459236-16459327 - GAATCCAAACTAAATGTGAGATACC--TCTAAA-ACAAATCAT------------AA---AGATTTTGATGTATTGAGATTA------------------TGTACATTTGCAGAACTTTGAGAAAGAC

dme-mir-3644 tailed_mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:11018004-11018094 - TTATTGCTGCAGGAGGTGAGTGATTAT----G-GTTTA----AGT-------AATACGAATTACATAAACTATATTTA-------ACCACTATTCTTAGATACAAAACACTGCT
droSim1 chr3R:10448012-10448102 + TTACTGCTGCAGGAGGTGAGTGTTTAT----G-GTTTA----AAT-------TATACGATTTACATAAACTATATTTA-------ACCACTACTCTTAGATCCAAAACACCGCT
droSec1 super_0:10933739-10933828 + TTACTGCTGCAGGAGGTGAGGTTTTAT----G-GT-TA----AGT-------TATACGATTTGCATAAACTATATTTA-------ACCACTACTCTTAGATCCAAAACACCGCT
droYak2 chr3R:15416636-15416724 + TTACTGCTTCAGGAGGTAAGTTTTT------G-GTTCA----GGT-------TTCATGAATTACATAAACTATATTTA-------ACCACATTCCTTAGATCCAAAATACCGCT
droEre2 scaffold_4770:10539530-10539618 - TTACTGCTTCAGGAGGTCAGTTTTT------G-GTTCG----ATT-------TCAACGATTTACATAAACTGTATTTA-------ACCATATTTCGTAGATCCAAAACACCGCT
droAna3 scaffold_13340:6107797-6107878 - TTGTTGCTGCAGGAGGTGGGTAGTG---------------AA---C------TTTTCAAATTACTATACC--------TTCATGAATGTTCTTTTGTAGATTCAAAATACTGCG
dp4 chr2:21002920-21003004 - CTGTTGCTGCAGGAGGTAGGCTACA------GAG------AA---C----ATTTAG---------TAAATAATAGTCGCTCATTC-TTTTCCCTAATAGATCCAAAACACTGCC
droPer1 super_3:3754054-3754138 - CTGTTGCTGCAGGAGGTAGGCTACA------GAG------AA---C----TTTAAG---------TAAATAATAGTCGCTCATTC-TCTTCCCTAATAGATCCAAAACACTGCC
droWil1 scaffold_181130:7245340-7245433 + TTGCTATTGCAAGAGGTCAGTTAGAAT----A-GCAAA----AGACACTCTTGGGATGGTTAATAATA----------TTCATAT-TTGGTTTTTGCAGATTCAAAATACTGCC
droVir3 scaffold_13047:7744104-7744193 - CTGCTGCTTCAAGAGGTGAGCAACTGCTTTTG-GCTTA----TGT----------TCGATTTTCAATGAT--------CTCTCG-AATACTTTTTATAGATACAAAACACAGCG
droMoj3 scaffold_6540:3682572-3682661 - TTGCTGCTGCAAGAGGTAAAATGTT------GAGCTCATAAAAGT----------TTCCTTT---TCAATTACA----TTCACAT-TCATTCGTTTTAGATACAAAATACGGCC
droGri2 scaffold_14830:3558248-3558343 - CTGCTGCTGCAGGAGGTGAGTTGCACCAACTG-ACACA----G-----TGTTTCCATAATTTACATTTTCTCTTTAT--------ATCTTTGTTCTCAGATACAAAACACGGCT

dme-mir-4908 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:26332536-26332624 + TTCAAGA--------TGAACTTG-GTAGGATTT--------TA-AGCA-TTAAGCATGTAT-ATAGTT-------------------TTTGCTGTGCTCATAAAGTTCTATAGGTTCTCGAT------------------------ACTTGG
droSim1 chr3R:25978440-25978522 + TCCAAGA--------TAACCTAG-GTAGGATTT--------TA-AGCA-TTA-G-----CT-ATAGTT-------------------TTTGCTGTGACCATAAAGTTCTACAGGCCTTCGAT------------------------TTTTAG
droSec1 super_4:5152157-5152239 + TCCAAGA--------TAACCTAG-GTAGGATTT--------TA-AGCA-TTA-G-----CT-ATAGTT-------------------TTTGCTGTGACCATAAAGTTCTACAGGCCTTCGAT------------------------TTTTGG
droYak2 chr3R:27249454-27249531 + TCCATGA--------TGAACTAG-GTAGGACTA--------TG-AGCA-T------------ATTGGA-------------------TGTACCATACTCATAAGGTTCCACAGGTACTAGGT------------------------ATTTGG
droEre2 scaffold_4820:1676549-1676626 - TCCTCGA--------TGAACTAG-GTAGGATAA--------TG-AGTA-CAA------------GGCA-------------------TTGGCCGTTCTTATAGAGCTACACAGGTACTCGAT------------------------TTTTGG
droAna3 scaffold_12911:4648843-4648934 + CTAAAGTTTT-----GGGACTTA-TTAGGATAA--------AACGGCG-TGA-G-----TAAAAGAGT-------------------TTAAACCAACTAAGAAAACT-CATTATTATTTAAA-------------------CATGTAGTCGA
dp4 chr3:12022571-12022657 + AACCTTT--------TGAACATGAGTAAGGAAT--------CG-GGAT-CGA-C-----GT-GTAGATCCATCCGTCCACTGACAACGT----------------CTTTGCAGACAAGAAGG------------------------AGCTCG
droPer1 super_20:1381640-1381720 + TACGCGG--------TGAGTGTT-GAAGGGAAG--------CA-AGCT-TTGAG-----CC-AAAGAT-------------------CT--GCAGGTTTTCAT---TTGACAGGCCTTGGTT---------------------T-GTCGGAT
droWil1 scaffold_181130:9833040-9833125 - TCCAACAC-------TGAATCAG-GTGGG-TAA--------TA-AGAAATTG-G-----C---------------------------------CTACAGGCTAA---------ATACTGAAATTCTGGAGAAAGATCCAAATCACGAAACGG
droVir3 scaffold_13049:21775409-21775494 + TTTGCCAGAGCGCGTCTATTGCAAGGTAGGTGG--------TG-GAAC-GCA-T-----CT-ATT-------------------------GATATGCCCGTACCTGATCAACTGTTGGCTAG------------------------GTATGC
droMoj3 scaffold_6540:13565415-13565500 - TGTAAGAAT------TAAGTTCA-AAACGATCGACTAACGCTT-AAAC-GCA-T-----AT-ACA----------TATATAAATATATTCCCTGTGTATACAA----------------TGT------------------------GCCTTG
droGri2 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------

dme-mir-4909 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:3598907-3598996 + GGCCATTAGGACAGGGTAGGTTGAA-----ATCGGATACAA---CTAAAAG-----TT-ATTTTTAATTGT-------------------AT--------CCG-GTCTT-C-ATTTTAGGTCTTCGATTGTTCC
droSim1 chr2R:2322894-2322983 + GGCCATTAGAACAGGGTAGGTAGAA-----ATCGGATTAAA---CTAAAAC-----TT-ATTTTTGATTGT-------------------CT--------CTT-GTTTT-C-ATTTGAGGTCTTCGATTGTGCC
droSec1 super_1:1254446-1254535 + GGCCATTAGAACAGGGTAGGTAGAA-----ATCGGATTAAA---CTAAAAC-----TT-ATTTTTGATTGT-------------------CT--------CTT-GTCTT-C-ATTTGAGGTCTTCGATTGTGCC
droYak2 chr2L:16271881-16271969 + GGCCATTAGGACAGGGTAGGTAGAT------TCGGGTTTAA---CTAAAAG-----TA-AGATTTAATAGT-------------------TT--------TCT-TTCCA-C-ACTTTAGGTCTTCAATTGTGCC
droEre2 scaffold_4929:19008519-19008607 - GGCCATTAGAACAGGGTAGGTAGGT------TCGGATATAA---CTAAAAG-----TA-AGATTTAATAGT-------------------TT--------TCT-TGCAT-C-ACTTTAGGTCTTCGATTGTGCC
droAna3 scaffold_13266:10106458-10106549 + GGCTATTCGAACGGGGTGAGTGAAAATTATTATGGA---AA---TTGATGG-----CA-------GAATCT-------------------CTCTAAAAAACT---CTTT-T-ATTGCAGTTCCTCAATTGTACC
dp4 chr3:6515146-6515237 - GGCCATAAGAACAGGGTGAGTGTAT-----AATGGAAGTAG---CACATTG--T--TT-AAATACGAAAGT-------------------AA--------CCTTGTTCC-T-GATGCAGTTCATCGATTGTGCC
droPer1 super_2:6735406-6735497 - GGCCATAAGAACAGGGTGAGTGTAT-----AAAGAAAGTAG---CATATTG--T--TT-AAATACGACAGT-------------------AA--------CCTTGTTCC-T-GATGCAGTTCATCGATTGTGCC
droWil1 scaffold_180700:1009012-1009118 + GGCTATACGTACGGGGTAAGTGAGG--------GGGTATGAAAAATAAGTTTATAG------AATGGCAGTTAATATTTGTTTT-----TCTTTT---TTCT---TTT--TATGTATAGTTCCTCTATAGTCCC
droVir3 scaffold_12875:823172-823263 + GGCCATACGCACGGGGTGAGTACGGCTG---ACTGCGATAA---CTGCACG-----CACATTCACGGCATT-------------------CA--------CTC--TCC--CATGAGCAGTTCGTCGATTGTGCC
droMoj3 scaffold_6496:3846141-3846250 + GGCCGTGCGAACAGGGTGAGTAGAC-----AGGAGA-AAAA---CTAACTGTATAACGCTTCCATTACATT-------CAACTATCCTCTCT--------CTTTGTCTCTTGTGAACAGTTCTGCTATTGTTCC
droGri2 scaffold_15245:10130930-10131015 - GGCCATACGCACGGGGTAAGTGTATCTGATACTGGGCATCG--------AA-----TA-AAATCTGACACT-------------------AA--------T-----CCA-T-GGCTCAGTTCGTCCATTGTGCC

dme-mir-4910 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:4817801-4817896 - GGGTGAAACAGGCAGGTTTGTATGGAAT---TCCATGAGCTT--------------------------CAAAGTAATGCTTCTAACTCTGTGGTTTTTC-ATA-----TTTCCCAGTGGCAAGAGCACCCA
droSim1 chr2L:4687585-4687681 - GGGTGAAACAGGCAGGTTTGTATGGAAT---TCCAGAAGCTC--------------------------CAAAGTAATCTTTCTAACTCTGCGGGTTTTCTATC-----TTTCCCAGTGGCAAGAGCACCCA
droSec1 super_5:2913658-2913754 - GGGTGAAACAGGCAGGTTTGTATGGAAT---TCCAGGTGTTC--------------------------CAAAGTAATCTTTCTAGCTCTGTGGTTTTTTCATA-----TTTCCCAGTGGCAAGAGCACCCA
droYak2 chr2L:4827662-4827759 - GGGTGAAACAGGCAGGTTTGTTTGGAAC---TCCACAAGAT-------------------------TTCAAGGTATTCCTTCTAACTCTGTGGTTTTTCCACA-----TTTTCCAGTGGGAAAAGCACCCA
droEre2 scaffold_4929:4898740-4898837 - GGGTGAAACAGGCAGGTGTGTATGCAAT---TCCAAAAGGT-------------------------CTCAATGTATTCCTTCTAACTCTGTGGTTTTTCTATA-----TTTCCCAGTGGCAAGAGCACCCA
droAna3 scaffold_12916:9386286-9386375 - GGGCGAGACCGGCAGGTGAGAATACAAT---TCTACAACCCA--------------------------TACCCTTGTTTTCA------TATCATTTTTT-CAA-----TTTTTCAGTGGCAAGAGCACCCA
dp4 chr4_group3:3567830-3567920 - GGGCGAAACAGGAAGGTGAGTGAGAAGCAAAT----------------ATGTATGCCCCAAGAAATCCTAACGA----------------TC--------ATATTTTCCCCTTCAGCGGCAAGAGCACACA
droPer1 super_1:5048029-5048119 - GGGCGAAACAGGAAGGTGAGTGAGAAGCAAAT----------------ATGTATGCCCCAAGAAATCCTAACGA----------------TC--------ATATTTTCCCCTTCAGCGGCAAGAGCACACA
droWil1 scaffold_180772:7924021-7924113 + CGGAGAGACGGGCAGGTAATT----AAA---ACCATAAGGTTACCTTAATGTATATTTAAAGTATTTAT-----------------------G---TACGATA-----TTTTGCAGTGGAAAGAGCACTCA
droVir3 scaffold_13246:521378-521407 + GGGCGAGACGGGC-----------------------------------------------------------------------------------------------------AGCGGGAAGAGCACGCA
droMoj3 scaffold_6500:7585086-7585115 - GGGCGAGACGGGG-----------------------------------------------------------------------------------------------------TCTGGCAAAACGACGCA
droGri2 scaffold_15252:16729554-16729583 - GGGTGAAACTGGC-----------------------------------------------------------------------------------------------------AGTGGGAAGAGCACACA

dme-mir-4911 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:11661994-11662091 - TGCGGATTCTGTCAGGTGAGGA---GGA-GCAAAGTGGCGCCACAA---------------------T-----------TTACTAGAAACTAATTGCA-----------TCTTTTTGTC------CCCCCGCGTAGGAAGCCTGTCCCGTG
droSim1 chr3R:9814135-9814231 + TGCGGATTCTGTCAGGTGAGGA---GGA-GCGCAGTGGCGCCACTA---------------------T-----------TTACTAGAAACTAATTGGA-----------TATTCTTGTC------CACCC-CGCAGGAAGCCTGTCCCGTG
droSec1 super_0:10292637-10292733 + TGCGGATTCTGTCAGGTGAGGA---GGA-GCGCAGTGGCGCCACTA---------------------T-----------TTACTAGATACTAATTGGA-----------TATTCTTGTC------CACCC-CGCAGGAAGCCTGTCCCGTG
droYak2 chr3R:14775389-14775483 + TGCGGATTCTGTCAGGTGAGGA---GGA-GCACACTCTTGCCACTG---------------------T-----------TTACGGGAAAATAATTGCA-----------TTTCCTTA--------CCCCC-TTCAGGAAGCCTGTCCCGTG
droEre2 scaffold_4770:11186817-11186911 - TGCGGATTCTGTCAGGTGAGGA---GAA-GCACAGTGGTGCCACTG---------------------T-----------GAAATGGAATCTTATAGCA-----------AATCCTT-T-------CCGCC-TTCAGGAAGCCTGTCCCGTG
droAna3 scaffold_13340:16266860-16266959 - TGCGGTTTCTGTCAGGTGAGGA---ACC-TTTCA---------------ATTTAAATTTATAAGAAGC-----------AAGTTC---------TAAA-----------TATTCTTGTATCATCAATTTA-CACAGGAGGCTTGCCCAGTT
dp4 chr2:20340730-20340823 - TGTGGCTTCTGTCAGGTAAGGAATGGGAGTCGAAATTTTTACATAA---------------------T-----------TTCAAGTCGATTCATTGAC-----------TT------T-------TTGCT-CGTAGGAGGCCTGCCCTGTG
droPer1 super_3:3092221-3092314 - TGTGGCTTCTGTCAGGTAAGGAATGGGAGTCGAAATTTTTACATCA---------------------T-----------TTCAAGTCGATTCATTGAC-----------TT------T-------TTGCT-CGCAGGAGGCCTGCCCTGTG
droWil1 scaffold_181130:15806459-15806551 + TGCGGATTCTGTCAGGTGAGTG---TGA-CTGAAATTCCAATTCAG---------------------C-----------ATATTTGAACTATATTA-------------T--------ATTTTCTGCCCC-TGCAGGAAGCTTGTCCCGTG
droVir3 scaffold_12855:5731320-5731404 + TGCGGTTTTTGTCAGGTAATTA---T------------------TA---------------------C-----------CCATAAGTATCCCATATAAAACTCATGGTGT------GTT------TCCTT-TGCAGGAGGCCTGTCCAGTC
droMoj3 scaffold_6540:6055055-6055141 + TGCGGTTTTTGTCAGGTAATT-----------------------TATCCATATGGATA-----------------TAATTTTGAGTGGGGT----T------CA-----TGATT--CTT------CCATT-AATAGGAGGCTTGCCCAGTC
droGri2 scaffold_14906:8272376-8272477 - TGCGGTTTTTGTCAGGTAATCT-----------------------ATTATTCTATATGTCCAGCAAGAAATTTAACAATTTTAATTATGTT----C-------------C--------ACATTTAAATGT-TGCAGGAGGCCTGTCCCGTC

dme-mir-4912 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:4829965-4830054 - CATTCGCAGCTTTAAGTGAGTAGTC---G--------------------TATGTTTATTA---------------------AGATT-TACT----TTCTATA--AATTAATGTCCA-----------------------CTACTTTTAGTCTCTATGACGATGA
droSim1 chr2L:4699797-4699886 - CATTCGCAGCTTTAAGTGAGTAATC---G--------------------TATGTTTATTA---------------------AGATT-CACT----TTCTATA--AACTAATTTGCA-----------------------CTACTTGTAGTCTCTATGACGACGA
droSec1 super_5:2925673-2925762 - CATTCGCAGCTTTAAGTGAGTAATC---G--------------------TATGTTTATTA---------------------AGATT-CACT----TTCTATA--AACTAATTTGCA-----------------------CTACTTGTAGTCTCTATGACGACGA
droYak2 chr2L:4839794-4839887 - CATTCGCAGCTTTAAGTGAGTAAAA---C--------------------TATGTCTATTA----------GGTG-------AAATT-AACT----TTCTATA--AATTACTTTTCT-----------------------TTATTTTTAGTCTATATGACGACGA
droEre2 scaffold_4929:4910720-4910828 - CATTCGCAGTTTTAAGTGAGTAAAA---T--------------------TAGGTTTAATTTGGTTTATTAGGAGAATTTTAAAAT--TAC-----TTTTTTA--AATTGCTTTTCA-----------------------TTATTTGCAGTCTCTATGACGACGA
droAna3 scaffold_12916:9399289-9399374 - CATTCGAAGCTTCAAGTATGTTAAGA---------AATCCACGATT-----------------------------------TTT--T-TATATTTTCATACA--AAAT-----TC------------------------ATTTTTTCAGCTTGTACGACGACGA
dp4 chr4_group3:3587822-3587933 - CATACGCACATTTAAGTGAGTAGGAA---------AAATCGTTGTTTAAGCTGTTTACTG---------------------CGATTGTA--------------------CTTTACTGTATTTACTGTATTTGGTA--CATGCCTTGCAGCCTCTATGATTCCGA
droPer1 super_1:5067398-5067508 - CATACGCACATTTAAGTGAGTAGGA----------AAATCGCTGTTTAAGCTGTTTACTG---------------------CGATTGTA--------------------CTTTACTGTATTTACTGTATTTGGTA--CATGCCTTGCAGCCTCTATGATTCCGA
droWil1 scaffold_180772:1562219-1562313 - CATTAAAACGTTTAAGTGAGTAGTAAATCTTGGTTAAC----------------CCAATA---------------------CGATTT-CATTGGCGTTTATA--AATT-----CC------------------------TCCACCTTAGCCTTTACGACGACGA
droVir3 scaffold_12963:8507047-8507138 + CATACGCACATTCAAGTATGTCA---------------------------------ACTA---------------------TGAT----------------A--AAATGCTTTGCAGTACTCTTTAAATATTGTATTCTCATTCGATAGCCTCTATGACGACGA
droMoj3 scaffold_6500:1118880-1118971 + CATACGTACATTCAAGTAAGCCCAA---T-TCGCC-------GACG-----------------------------------TTA--T-GGTATTCATATACAAATGCTAATCATTT-----------------------ATCCCTTTAGCCTCTATGACGACGA
droGri2 scaffold_15252:11699277-11699378 + CATACGCACCTTCAAGTATGTGCAA---T-GGGTAAACCATATGTGAGAGATTTAAACCT---------------------TAATTTTA--------------------CTTTCCTATATCT-----------------GCCCAAACAGTCTGTACGATGACGA

dme-mir-4913 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3L:8347269-8347356 - TGTTCAACTACTTGAGTGAGTTCGATT---GGAA-------------------------------AAT---------TTAAATTTAA----TGT---TTAATTAACCAATTCGAATTGCTTAGATTGCTATATTGGCT
droSim1 chr3L:7807265-7807357 - TATTCAACTATTTGAGTGAGTTCGATT---GAAA---------------------AT--TTGGAAAAT---------TTAA-------ATATGT---TTAATTAACCAATTCAATTTGCATAGATTGCTACATTGGCT
droSec1 super_0:643746-643838 - TATTCAACTATTTGAGTGAGTTCAATT---GGAT---------------------AT--TTAGAAAAT---------TTAA-------ATATGT---TTAATTAACGAATTCAATTTGCATAGATTGCTACATTGGCT
droYak2 chr3L:3551197-3551288 + TATTCAACTACTTGAGTGAGTTCGATT---GGAC---------------------AT--TCGGAATAT---------TTCA-------ATATGT---ATAATCT-CCAATTCCAATGGTTTAGATTGCTACATTGGCT
droEre2 scaffold_4784:5683607-5683696 + TATTCAACTATTTGAGTGAGTTCGATT---GAA----------------------GT--TCGGAATAT---------ATTA-------ATA-GT---TTAATTGT-CAATTCCAATGGCTTAGATTGCTACATTGGCT
droAna3 scaffold_13337:7445991-7446073 + TGTTCAACTATTTGAGTGAGTATCTTC---CTA------------------AGAAGGAAGT-------GTC--AT--T---TATTTA----TGAT---------------A-TTACTGCATAGATTGCTACATCGGCT
dp4 chrXR_group6:12821045-12821128 - TTTTCAACTATTTGAGTGAGTACCACG---AGAGAT-----------------------CC-------CTC--CTTCTGATTGTTAA----TGTT---------------TTTTGTGCCGCAGATTGCTATATCGGCT
droPer1 super_33:845496-845579 - TTTTCAACTATTTGAGTGAGTACCACG---AGAGAA-----------------------CC-------CTC--CTTCTGATTGTTAA----TGTT---------------TTTTGTGCCGCAGATTGCTATATCGGCT
droWil1 scaffold_181009:3090042-3090138 + TCTTCAATTATTTGAGTGAGCGAGGCTACGA-AT--------ATTCTCTAGAGGAAT--TTGGAATG----------------CTAAGATTCGT---TT-----------TTCTTTTCCGTAGATTGCTACATTGGCT
droVir3 scaffold_13049:4752940-4753026 - TCTTCAACTACTTGAGTGAGTGAGGCTT--AGAGG------------------------CTG-------TCGACTACTTTC-GCTTA----TGCCTG-------------AATCTCTCTGCAGATTGCTATATCGGCT
droMoj3 scaffold_6680:3143577-3143662 - TCTTCAATTATTTGAGTGGGTAGAGTG---AAGTAT-----------------------TT-------CTT--ATACTCCAGCCTAA----TGTTGG-------------TCTCTCCTTATAGATTGCTATATTGGCT
droGri2 scaffold_15110:10166029-10166124 + TCTTCAACTATTTGAGTGAGTACTTTG---AGT-TTGTCTTAATCCCCTGGATAGGTGAG--------------TGCTGAGTGGTGA----TC--------------------TCTTTCACAGATTGCTATATCGGTT

dme-mir-4914 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2L:2737553-2737676 + AGACGAGCCCACAACGTGAGTGA-GAGCGAGT------TCCAAT-----------------------GTGGTCC----------------------TCGAAACCAGTTGTGCTTCGATCAGATTCCAAAATTGACACATT--CCG---------------------------------ACCTTGAATCA-CCCACAGCGGATTGGACAGCTC
droSim1 chr2L:2697912-2698035 + AGACGAGCCCACAACGTGAGTGA-GAGCGAGT------TTCATT-----------------------GTGGTCC----------------------TCGAAACCAGTTGCGCTCCGATCAGATTCCAAAATTGACACATT--CCG---------------------------------ACCTTGAATCA-CCCACAGCGGCTTGGACAGCTC
droSec1 super_5:903635-903758 + AGACGAGCCCACAACGTGAGTGA-GAGCGAGT------TCCATT-----------------------GTGGTCC----------------------TCGAAACCAGTTGCGCTCCGATCAGATTCCAAAATTGACACATT--CCG---------------------------------ACCTTGAATCA-CCCACAGCGGCTTGGACAGCTC
droYak2 chr2L:2732711-2732833 + AGACGAGCCCACAACGTGAGTGA-GA----------GGTCCATT-----G-----------T-----GTGATCC----------------------CCAAAACCAGTTCTACTCAGATCTGATTCC-AAATTGACACATTCTCTG---------------------------------ACCTTGAATCA-CCCACAGCGGATTGGATAGCTC
droEre2 scaffold_4929:2790150-2790269 + AGACGAGCCCACAACGTGAGTGA-GA----------GGTCCATT-----------------------GTGGTCC----------------------TTGAAACCAGTTCCGCTCGGTTCATGATGCCAGATTGACACATT--CCG---------------------------------ACCTTTAATCA-CCCACAGCGGATTGGACAGCTC
droAna3 scaffold_12916:13439490-13439581 + GGACGAGCCAACAACGTAAGT--------------------------------------------------TCT----------------------CTGAAACCATTC----------CAATTTTCAAACTTATCAAGTT--G-----------------------------------TTAATGTCTTT-CACACAGGGGCTTGGATAGTTC
dp4 chr4_group4:2073904-2074060 + AGACGAGCCCACAACGTAAGTATCGAACGAGTGAGAGGACCA-GACCAG--AGGCAGCATCTGCGATGCGGTCGAAAAGAGAAGAGAAACCAGAGAGCTAAACCAGTTGCTGACT-----------------GACATTCC--ACA---------------------------------ACCTTGAACCATCCCACAGAGGCCTGGATAGTTC
droPer1 super_10:1078988-1079144 + AGACGAGCCCACAACGTAAGTATCGAACGAGTGAGAGGACCA-GACCAG--AGGCAGCATCTGCGATGCGGTCGAAAAGAGAAGAGAAACCAGAGAGCTAAACCAGTTGCTGACT-----------------GACATTCC--ACA---------------------------------ACCTTGAACCATCCCACAGAGGCCTGGATAGTTC
droWil1 scaffold_180772:1508923-1509021 + AGACGAGCCCACAACGTAAGTAA-TAACAAA------------------------------------------------------------------AAAGACCGGTTATTTCCT-----------------G---------TTAGCCTTGAACTTAACCAACATCTC-------------------AA-CCAACAGAGGCCTGGACAGCTC
droVir3 scaffold_12963:11356884-11356997 + AGACGAGCCCACAACGTAAGCAA-GAATAGAG------A------ATGCAATCAAT-----------G----------------------------CGGAAACCAGTTGCTGACT-----------------AACATGTG--CTTACCTTGAAATTG-----T---------------------AACCA-TTCGCAGGGGCCTGGATAGTTC
droMoj3 scaffold_6308:1548466-1548588 - CGACGAGCCCACGTCGGGCCTGG-------A-----C-TCCTTTACCGC--CCACAGC---------------------------------------GTC---------------GTCCAGGTGCTGAAGAAGCTA----------TCGCAAAAGGG-----CAAGACCGTCATACTGACCATACATCA-GCCATCG----TCGGAGCTCTT
droGri2 scaffold_15252:5474360-5474483 + GGACGAGCCCACAACGTAAGTGA-AA----------CA-CCGAAACACCA-----------C-----ACAATC------------------------GAGAACCAGTTACTGACT----AA------GCATTATTATTTT--TTAACCTTGAAATTG-----CATCGC------------------ATC-CATACAGGGGCCTGGACAGTTC

dme-mir-4915 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:29757-29904 + GAAAATGCCACCCAGGTGAG-------AAAAAGTA----------GTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTA------AGC-------------------------------------------------------------------------------------------------------------------------------------AT---ATC----------------------ACGC--------AAGGAC------AAACATTAAGTTAAGGCCTAGTTCCTATTATACTAGGAATACTCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTACTTATG--------CC---------------------------------TC----T-TATTCTTC-TTTT--CTCAGACCTCCGCCAAAGAA
droSim1 chrX:14351-14498 + GAAAATGCCACCCAGGTGAG-------AAAAAGTA----------GAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTA------AGC-------------------------------------------------------------------------------------------------------------------------------------AT---ATC----------------------GCGC--------AAGGAC------AAGTATTAAGTAAAGTTATAGTTCCTATTATACTAGGAATACTGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTACTTATG--------CC---------------------------------TC----T-TATTCTTT-TTTT--CCCAGACCTCCGCCAAAGAA
droSec1 super_108:19641-19788 + GAAAATGCCACCCAGGTGAG-------AAAAAGTA----------GAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTA------AGC-------------------------------------------------------------------------------------------------------------------------------------AT---ATC----------------------ACGC--------AAGGAC------AAGTATTAAGTAAAGTTATAGTTCCTATTATACTAGGAATACTGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCCTTATG--------CC---------------------------------TC----T-TATTCTTT-TTTT--CCCAGACCTCCGCCAAAGAA
droYak2 chrX:20604-20735 + GAAAATGCCACCCAGGTGAG-------AGAACTAA----------GTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATA------AAA-------------------------------------------------------------------------------------------------------------------------------------AT---ATC----------------------CTGC--------CAAGTTA-AA----------AGTGAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATAATTGCATAG----------------------------------------------------------------------------------------------TTTTCCTACTAATG--------TC---------------------------------CC----TTTCTTCTTC-TTTT--CCCAGACCTCCGCCGAAGAA
droEre2 scaffold_4644:14892-15014 + GAAAATGCCGCCCAGGTGAG-------AAAATTTA----------GTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATA------AGC-------------------------------------------------------------------------------------------------------------------------------------ATCTTATC----------------------CTGC--------AAAGAA---A----------AGTTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATA-------AG----------------------------------------------------------------------------------------------TTTCCCTACTAATG--------CC---------------------------------CC----T-TTTTCTTC-TTTT--CCCAGACCTCCGCCAAAGAA
droAna3 scaffold_12929:1781922-1782010 - AGAAATGCCACCCAGGTGAGTCTGTCTAGAGTTTG----------ATGGGATTGGAGTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----------ATT-------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-G----GA----TTGT-GATT--TTCAGACCTCCGCCAAAGAA
dp4 chrXL_group1a:594378-594471 + GAAAATGCCACCCAGGTGAGT-------GTCCGAG----------GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTTC--------------------------------------------------------------AATGGACTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGACCAATA--------TC-------------------GTC-----------TT----T-GA-TCCTT-TCCC--GGCAGACCTCCTCCAAAGAA
droPer1 super_157:12433-12452 + GAAAAAGCCACCCAGGTGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1 scaffold_181150:2495748-2495847 + GAAAATGCCACCAAGGTGAGT-------GAGATAA----------GTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--TTCCTTTTTTTCTC-----ACAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTAATTA-----------C---------------------------------CG----TTTCCACTTCTTATT--TTCAGGCCACCGCCTAAGGC
droVir3 scaffold_12928:440188-440807 + GAAAATGCCACCCAGGTAAATGCGCGTATGTT--GATTAACCAGACTTGCAATGGAATCAGGGAAAGGGGTCGTCTATCAGTGAGGCGAAATTAACAGAGCTA---------------------GGAAAATTTTGGAAGTTGCATAAATT-------------------------------------------------------------------------------CAAAAAGAATCCAAAGTGGAGAAGGATATTCACCTGAAGAGCCAGAAATTGTTGGGTTATTTAAACACTTGGGTTAAAATGGAGTTAA---------GAACAA--------------------------------------------------------------------GCGAAAAATATCAATTGGAAAATGGGCTTAAGACAATGCGCGACTACGAAATACCCTGGACAAAGCGC-GACTACGAAATACCCTG--------------------------------------------------------------GACAAAGCGCTGAGCTGTCCTTAAAAACATTCTAGCTTCCTTCTGTAAT------------ACACACACACACACACACACACATACATGCAGATTCTGTGCTTCAGTCACATAAATC------------------------------------------------------------------------------------------------------------------------------------------------------------ATGATAA----CATCGTAATACCCTCTACAAAGGGTATACGAATGATGTAATCTAGGATTGAAGCAAACCA---------TCTGAAAGG---TCTTTGGGCTTGACAAACAAATAGTTGGGCGAAACAGA-GAACAGTTTAGCTCCGCT------------------------------GTCGAGTTGTG--------ATTCCTGAGTGTTTTTTCTCT---TATTAATAGA-TC----AAT--TTGCT-TGCT--TGCAGACCGCCGCCAAAGAA
droMoj3 scaffold_6328:1398030-1398785 + GAAAATGCCACCCAGGTGAGT-------ATG-----------------GGATTAGCATTAGGGAAGGAATTTAAATTTGAATAGGAAAAAATTTGTAGACTCTATATA----------------------------------------CCCTATAGTAAATATTCTTAAGGGTCTAAACCAAACTCTTGTCGAATTCAATTTTTGATTTTCTTGTCTTTAATTTCTTGACTAAAATTACCCCAAGTCTATTAGTATCTGGAGTTTTAGGACTTGCATCTTGTATGTTAA-------------TAAAAATCGGACTAA---------AAATATCTTGAATGTCTGTCTCTTAACTTGGTCAAATCTAATCTGACTAAATCGTTAGATTATTTCCGTGTATTGGAACATACAACTATTGTATAATACGTCTATAAATACCCTTTACTTCGTTACATCAAGATGAAAGCTGATTTTAAGAAATAATTTGATTGATTCCACATTAAAA----------ATT---------------------------------------GCCGAGTTGTGACTCCAAACTAAATTG-----TT--------------------------------------------------------------------------------AGATAAGGTAGATAGATAAATGGA-----------------------------------------AAGGCCTATAGGTCTATCGTAAAT--GCCCCACCCATGCTGATCAGAA------------------ATGTGTATTTGTATAAACAATATGATAAATGTTTTCATAATATAA--TTCGAGTGCTAGACAAATGATAAGTCAAAGGAA--GGGCAAATGATA-------AGTGAAAGGAAACCTTGGGGCTTTACTAAT-----------CGATATAGTTGACTGGTTTAGTTCAGCTATGGAGTATATAGTAGTATAGTTACTG----CTGGCCACACACTATGGC---------------------GTC-----------TCACTCA-CA-TCCCA-TCCCATTGCAGACCGCCGCCAAAGAA
droGri2 scaffold_15203:6868729-6869248 + GAAAATGCCACCCAGGTGAGT-------GGC-------------------ATTGTAGTTG-----------------------------------------CGACACAGTTGCCAGTAGCGCTAACTTATTTT-----------------------------------------------------TATTC-------------GACT-------------------------------------------TCTTTGTCCGCTTGAAGAGTAAC-----------------------------TCTAACAAATTTAAAAACCCATTTATCAA--------------------------------------------------------------------ACGCGACGCGACGAATCAGAAACAGGCTTCAATTTATGCAGAGCTCTGCAGCATCTCTTC----------------------TAGA--------AGAGAA---GAGATACAGAGAGAAAAGGCGTGGT-----------------------------------CGATCTTTAAAAGAGGTTCCCTTCCTTCAATCTCTCAAATTGTAGCAGATATGCAGTTTTATTGATTTACACTTTCAGA--------------AATATCGCTTTTGGCGATTAGGGCGGTGGGTGTGTGGGCGTTGCCGTTGCCAGTTACCGTTTATATACCTTGCAACTCAAAAGCTTTTATGGGCGGCGGAGATGGGCATCGCTGATGCCGATCTTTGAAAGACATCGCGAAATATTTGTGTTCAT------------------------------------------------------------------------------TTAACAACTGCATTA----------------------------------------------------------------------------------------------TTTTTG----------------T-----------------------TTTTTTTTGAT-T----TG----TTGT-TATC--TGCAGACCGCCGCCAAAGAA

dme-mir-4916 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:9130478-9130566 - AAGTACTCAAGATAAG--TGGGT-GTTCTTG--GAAATTCGCC-TCGATCGGTAGCTAAA---------------------------------TTTCTGATTACTCCTAAAAGCCT-TTTGGATTGAGC
droSim1 chrX:7292594-7292672 - A---------GATAAG--TGGGT-GTTCTTG--GAAATTCGCC-TCGATCGGTA-CTAAA---------------------------------TTTCTGATTACTCCTAAAAGCCT-TTTGGATTGAGC
droSec1 super_68:18213-18301 - AAGTACTCAAGATAAG--TGGGT-GTTCTTG--GAAATTCGCC-TCGATCGGTAGCTAAA---------------------------------TTTCTGATTACTCCTAAAAGCCT-TTTGGATTGAGC
droYak2 chrX:17726636-17726725 - AAGTTCTCAAGATAAG--TGGGT-GTTCTTG--GAAATTCGCCTTCGATCGGTTGCTAAA---------------------------------TTTCTGATTACCCCTAAAAGCCT-TTTGGATTGAGC
droEre2 scaffold_4690:5984818-5984906 + AAGTTCTCAAGATAAG--TGGGT-GTTCTTG--GAAATTCGCC-TCGTTCGGTAGCTAAA---------------------------------TTTCTAATTACTCCCAAAAGCCT-TTTGGATTGAGC
droAna3 scaffold_13047:993021-993104 - AAAACCTGAGAATAAG--TGGGTAGTTCCGAGCGAAAGACTCC-TCCATCTTAA---------------------------------------CATCCATTT--CCCGTTCAGCCT-TTTGGATTGAGC
dp4 chrXL_group1e:1170761-1170857 + AGCTGCTCAAGATAAG--TGGGT----TCCG--CAGATACGTTTTTCCTCTGCAG-----------------------ACTCGAGAGTCTCTTTTTTTGGCTTTCGCCCACAGCCT-TTTGGATAGAGC
droPer1 super_30:24276-24372 - AGCTGCTCAAGATAAG--TGGGT----TCCG--CAGATTCGTGTTTCCCCTACAG-----------------------ACTCGTGAGTCTCTTTTTTTGGCTTTCGCCCACAGCCT-TTTGGATAGAGC
droWil1 scaffold_181096:7487008-7487059 + TTGATTACTACAT--------------------------------------------TGATTTCAACTTTCA---------------------T-----------TTGATAAGCCT-TTTGGATTGAGC
droVir3 scaffold_13052:1731753-1731829 + AAAATTTAAATAAATA--TATGT-GTAATTT--GAATACTGCC-TCGATGGTTAGCTACG---------------------------------TTTTTTA------------TTCT-TATGTACCTCTT
droMoj3 scaffold_6498:2397368-2397459 + TAATATTTGAAATTAGGCTTATT-GTTATTAA-TAAAGCCTCA-TTTTTCTGCA-CTTGG---------------------------------CTTTAAATTATTTTTCAAAATTTGGAGATATTGAGC
droGri2 scaffold_15203:7061820-7061918 + AAGAGCTTAAGATAAG--TATGT-GTTCCGT--GTGATAAAAG--GAATCTTCAG----A------------CAGCGAACT-GA---TCGCC-TTACTGAATCCG-CTTGCAGTCT-TTTGGATTGAGC

dme-mir-4917 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chrX:14093563-14093669 + GAGAGCCCCAGCAGAGTGAGTA-------GCGA---------------------------------------------------------------------------------TGGGG-GTCAGATGG-----------------------------------------------------------CCGTGGAA----GATATGTGACGATTGCC--------------------------------------------------------------------------------------------------CCCTTAC----------T---------------------ACTATCGTC---TGCTCAACAGGAAAGCAAACTACAT
droSim1 chrX_random:3764305-3764407 + GAGAGCCCC---AGAGTGAGTA-------GCGA---------------------------------------------------------------------------------TGGGG-GTCAGATG-------------------------------------------------------GATGGCCGTGGAT----GATATGTGACGATTGCC----------------------------------------------------------------------------------------------------CTTAC----------T------------------------ACGCTC---TGCCCAACAGGAAAGCAAGCTACAT
droSec1 super_20:697977-698075 + GAGAGCCCC---AGAGTGAGTA-------GCGA---------------------------------------------------------------------------------TGGGG-GTCAGATGG-----------------------------------------------------------CCGTGGAT----GATATGTGACGATTGCC----------------------------------------------------------------------------------------------------CTTAC----------T------------------------ACGCTC---TGCCCAACAGGAAAGCAAGCTACAT
droYak2 chrX:8347469-8347564 + GAGAGCCCC---AGAGTAAGTA-------GCCA---------------------------------------------------------------------------------GGGGG-ATCAGGAGG-----------------------------------------------------------CCGCGGAA----GGTATGTGATGATTCCC-----------------------------------------------------------------------------------------------------------------------------------------ATTACCCTC---CGATCCACAGGAAAGCAACCTACAT
droEre2 scaffold_4690:12836867-12836962 - GAGAGCCCC---AGAGTGAGTA-------CGCA---------------------------------------------------------------------------------GTCGG-GTCAGAAGG-----------------------------------------------------------CCGCGGAA----GATATGTGATGATTCCC-----------------------------------------------------------------------------------------------------------------------------------------ATTCCCCTC---CGATCAACAGGAAAGCAACCTACAC
droAna3 scaffold_13047:1616598-1616749 + GATACCCCG---AGAGTGAGTTAAATA-----GGTAGACTGGGTTTTACGGGTTTTGGGGATTAGGGTTAAGGGGTTTAAGGATCAGGGACTTGGCTA----------------GAAGG-ACCAA------------------------------------------------------------------AGGA-CTTA-----------------AGAA------------------------------------------------------------------------------------------------CTAAC----------A---------------------AAAATTCAC---CATTCCACAGGCAAGCACGGTACAC
dp4 chrXL_group1e:6144259-6144391 - GAAAACTCC---AGAGTGAGTTGAGTGAGGTT-----------------------------------------------------------------------------------GAGAGCCGGGGTG-------------------------------------------------------------CTCGGAA----GA----------CCATCCTC-------------------------------------------------------------------------ACTGATCCTATTCTAATCTT-------CCCCTCTTTCGTCTATATCTCTC--------------TCTCTC---TCGTCCGCAGGCAAGCGAACTATAC
droPer1 super_21:1109353-1109492 - GAAAACTCC---AGAGTGAGTG-------GTTG-----------------------------------------------------------------------------------AGAGCCGGGGTGC-----------------------------------------------------------TCGCAA------GA----------CCTTCCTC-------------------------------------------------------------------------ACTGATCCTATTCTAATCTT-------CCCCTCTTTCGTCTATATCTCTCTCTCTCTCTCTCTCTCGCTC---TCGTCCGCAGGCAAGCGAACTATAC
droWil1 scaffold_180702:2428501-2428590 + GAGAACACA---AGGGTGAGTG-------GGAG---------------------------------------------------------------------------------GAGAG-ATGAGAGGA-----------------------------------------------------------GAATGGA------------------------------------------------------------------------------------------------------------------------CTTTAAC-CGCCATTATT------------------------T--CTT---TCTTCCACAGGGAAGTGAACTACAA
droVir3 scaffold_12970:1543996-1544230 - GAAAACACA---CGAGTAAGTG-------GACAACTATC---------------------------ACTATACCCC-----------------------------------------------AG-TAACCCTGGAGACACCTTCGACCC-ATGCTAACTTGCTGATTTTCGAGGGCTATGTTTGTAG-----CC-ATAT-----------------GCTATGTTACGGCAGTTTTAAGCTAGGTTCAGG------GTA-TCCTCCCAGCCGGGCCCTCTCGACCAGCGCAATCCTGCTCTAATAAATTTC------TTCAA----------C------------------------ATTTTCTATCCAACAGCAGTCAAGCGAAATACAG
droMoj3 scaffold_6359:2739408-2739517 - GAAAACACA---AGAGTGAGTG-------ACAA---------------------------------------------------------------------------------GATTT-ATATATATT-----------------------------------------------------------TATAGGA-ATAT-----------------AATA------------------------------------------------------------------------------------------CTAATTCTTAT-CTACGTTATT------CCC------------GTCTCACTC---AATCAATTAGTCGAGCCGAATACAT
droGri2 scaffold_15081:1312788-1313066 - GAAAACAGA---GGAGTAAGTACGATC-----AGCTCGC---------------------------ATTATACCCCGTAAGAGAAGGTTCCCTAATGAAATGGACAAACAGAAATAGAA-ATCAATTT-----GAAAATCGGTGCAAGGTAAAATTAACTTGAT---CTCTCCAGCATAAATATATAT-----AT-ATAC-----------------GCTG------GACAG-ATTAAGTTCATTTTAGATGGTCGATAACACTTTCAACA--CCTTTTTAAATCAATTTCAAACTGCTTTTATTCAATTATT-------AACGTTTATCGTT------------------------T--TAT---CTGTCAACAGTCGAGCGAAATACAG

dme-mir-4918 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr3R:4134138-4134222 - TCGCACATGTCTAAGGTGAG------CAC----GATGGCCACATTTA-----TTGGGCAA----------CCAATGAA-------TT--CCCGCCTGCC---CACAGGTTCACTCG--GTCTGC
droSim1 chr3R:17124439-17124521 + TCGCACATGTCCAAGGTGAG------CAC----GATGGCCACATTTA-----TTGGGCAA----------CCCATGAA-------TC--C--TCCTGCC---CACAGGTTCACTCG--GTCTGC
droSec1 super_0:17695137-17695219 + TCGCACATGTCCAAGGTGAG------CAC----GATGGCCACATTTA-----TTGGGCAA----------CCCATGAA-------TC--C--TCCTGCC---CACAGGTTCACTCG--GTCTGC
droYak2 chr3R:8209596-8209678 - GCGCACATGTCCAAGGTGAG------CAC----GGCGGCCCCA------AA--------ATCAAAGTTCTCTGACCAA-------A-----ATCCCGCC---CACAGGTTCACTCC--GTCTGC
droEre2 scaffold_4770:17439359-17439448 + GCGCACATGTCCAAGGTGAG------CAC----GATGGCCCCG------AC--------ATCGAAATT--C---TAAATCCCCAATCCAAAATCCCGCC---CACAGGTTCACTCA--GTCTGC
droAna3 scaffold_13340:13231716-13231803 - GCCCATCTGAACAAGGTAAT------TTG-AAT--TTGTGTTTT-TG-GCC-AGGAGCAA----------TTGATGTA-------TT--TGTTTATGTT---CGAAGGTACACTCT--GTTTGC
dp4 chr2:14657774-14657858 - GCCCACACGTCCAAGGTAAG------AA-----GCTAGTCGAA------AA--------ATTGAGGCATTTTCACGAA-------AC--A---ATTGTCTGAGGCAGGTTCACTCC--GTCTGC
droPer1 super_0:5758126-5758210 + GCCCACACGTCCAAGGTAAG------AA-----GCTGGTCGAA------AA--------ATTGAGGCATTTTCACGAA-------AC--A---AATGTCTGAGGCAGGTTCACTCC--GTCTGC
droWil1 scaffold_181089:2794443-2794538 + GCACATATGTCCAAGGTAAT------CAA-ATT--TAATGTAATTTA-----CCAGACAAGCGTTCCCTTTTTACAAA-------TT--TTCTTTCCCT---GGCAGGTTCACTCG--GTTTGC
droVir3 scaffold_12822:435887-435972 + CCACACATGTCAAAGGTGGG------TATAAAA--CCATTTAGT-CT-GTC-----------GGTGGCATTTAATTGG-------TT-----TTCTTTT---CGTAGGTGCATTCG--GTGTGC
droMoj3 scaffold_6540:27855886-27855971 - CAGCAA-TAGCAACAGCAAC------AGC----AATAGCAACAGCAACAGC----AGCAA----------CACCTGCAA------GC--CGCGGCAGCC---CAAAGTCTCGTTCG--CACCGC
droGri2 scaffold_15245:11304334-11304423 - ATGCACAGCTCCTTAAGCAATATGAACAG----CAGAGCCTGG------GTAGTGATGTA----------CC--TGGAT------CC--C-GGCCCATC---TACACGTTCAGTGGACATCAGC

dme-mir-4919 mirtron Pileup and folds Correction UCSC

Species Coordinate Alignment
dm3 chr2R:11833377-11833466 + TGGACATACTAAATGGTGAGTCTC-----T--------------------AGGGGATTAGCAAGCTATAATT---------------------------------TCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG
droSim1 chr2R:10571957-10572046 + TGGACATACTAAATGGTGAGTCTC-----T--------------------AGGGGATTAGCAAGCTATAATT---------------------------------CCTCAATTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG
droSec1 super_1:9333409-9333498 + TGGACATACTAAATGGTGAGTCTT-----T--------------------AGGGGATTAGCAAGCCATAATT---------------------------------CCTCACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG
droYak2 chr2R:17148711-17148800 - TGGACATACTGAATGGTGAGTCTC-----T--------------------AGGGGATTAGCAAGCCATGATT---------------------------------CCTCCCTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGTG
droEre2 scaffold_4845:14024563-14024652 - TGGACATACTAAATGGTGAGTCTC-----T--------------------AGGGGATTAGCAAGCCATATTT---------------------------------CCACACTTAATCCCTGAACGACTTGCAGAGGCCGTTTTGGGAG
droAna3 scaffold_13266:11891001-11891093 - TGGACATACTGAATGGTGAGTTTACAAGTCG-------------------------GCACTAAT--------TTTTGAAGCGGGAATGTGAATATGA----------------------GCCGTAAATTGCAGAAGCGGTGCTGGGCG
dp4 chr3:18992460-18992549 - TGGACATCTTAAATGGTGAGTCTTCCATTCCAGTTCCTTTGCGTTTTGTC----------------------------------------------------------CACTGATTCACTCAAACTTATACAGAGGCCGTTTTGGGTG
droPer1 super_242:24174-24263 - TGGACATCTTAAATGGTGAGTCTTCCATTCCAGTTCCTTTGCGTTTTGTC----------------------------------------------------------CACTGATTCACTCAAACTTATACAGAGGCCGTTTTGGGTG
droWil1 scaffold_181150:1332685-1332769 - TGGACATAATAGCGGGTGAGTGAA---------------------------AGAGAT-ACGAGATTACAATT---------------------------------TG-GATTACATTTT-TGGTTGGTCGCAGAAACGTCAATGGGTA
droVir3 scaffold_12875:17265801-17265883 + TCGATGTGCTGAATGGTGAGCTTT--GCCTG-------------------AGTGGGTC--------------CACACC-----------AAATCCTAATC-----C--------------CATTTATTTGCAGAGGCTGTGCTGGGCG
droMoj3 scaffold_6496:10745157-10745258 - TCGATGTGCTAAATGGTAAGTCCC--ACTTC--------------------AGGCACTTCTAATCT-----------------------GAATATTAATACTCTTTCTTTCTCTCTCTC-TCCTGTCTTGCAGAGGCTGTACTTGGCG
droGri2 scaffold_15245:16779329-16779419 + TCGATGTTTTAAATGGTGCGTGCTTAACTTG-------------------------AAAGAGAT--------CTCACAAAT------------------------CCAATCTTAATTAAGTGATTCATTGCAGAGGCTGTTCTGGGTG